Psyllid ID: psy208
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | 2.2.26 [Sep-21-2011] | |||||||
| Q9NUQ8 | 709 | ATP-binding cassette sub- | yes | N/A | 0.918 | 0.574 | 0.599 | 1e-157 | |
| Q8K268 | 709 | ATP-binding cassette sub- | yes | N/A | 0.918 | 0.574 | 0.601 | 1e-156 | |
| Q66H39 | 709 | ATP-binding cassette sub- | yes | N/A | 0.918 | 0.574 | 0.601 | 1e-156 | |
| Q5R9Z5 | 709 | ATP-binding cassette sub- | yes | N/A | 0.918 | 0.574 | 0.592 | 1e-155 | |
| O59672 | 736 | Uncharacterized ABC trans | yes | N/A | 0.909 | 0.547 | 0.472 | 1e-112 | |
| P43535 | 752 | Protein GCN20 OS=Saccharo | yes | N/A | 0.909 | 0.535 | 0.428 | 1e-104 | |
| Q8H0V6 | 715 | ABC transporter F family | yes | N/A | 0.884 | 0.548 | 0.434 | 7e-98 | |
| Q8T6B4 | 1142 | ABC transporter F family | no | N/A | 0.907 | 0.352 | 0.375 | 3e-78 | |
| Q9FJH6 | 595 | ABC transporter F family | no | N/A | 0.896 | 0.667 | 0.339 | 5e-74 | |
| Q9M1H3 | 723 | ABC transporter F family | no | N/A | 0.907 | 0.556 | 0.374 | 6e-74 |
| >sp|Q9NUQ8|ABCF3_HUMAN ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 556 bits (1432), Expect = e-157, Method: Compositional matrix adjust.
Identities = 260/434 (59%), Positives = 333/434 (76%), Gaps = 27/434 (6%)
Query: 35 MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADA 94
+ + LR+P+HIS+LHVEQEV GDDTPA+ SVLE D+ R++LL RE+ +T I G A+
Sbjct: 223 LATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDSVREDLLRRERELTAQIAAGRAEG 282
Query: 95 NMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------- 146
+ + EL +++A+LE IEADKAPARASVILAGLGFTP+MQ++ T+ FSGGWR
Sbjct: 283 SEAAELAEIYAKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARAL 342
Query: 147 ------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+
Sbjct: 343 FARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRL 402
Query: 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLE 248
D YRG++E F K K E+L NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE
Sbjct: 403 DGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLE 462
Query: 249 RLPELKPIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
+LPELKP++KE EVV+KFPD E SPPILQL EV+F Y P I + + + A LESRIC
Sbjct: 463 KLPELKPVDKESEVVMKFPDGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRIC 522
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG+NGAGK+T+LK+++G ++P G R HRNLK GYFSQHHV+QLD+N+ V+LL F
Sbjct: 523 VVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKF 582
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PG+P+EEYR QLG +G+SG+LA++ + SLSGGQKSRVAFA+M M PNF +LDEPTNHLD
Sbjct: 583 PGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLD 642
Query: 428 IETIEALGKAINKY 441
+ETIEALG+A+N +
Sbjct: 643 METIEALGRALNNF 656
|
Homo sapiens (taxid: 9606) |
| >sp|Q8K268|ABCF3_MOUSE ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1424), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/434 (60%), Positives = 331/434 (76%), Gaps = 27/434 (6%)
Query: 35 MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADA 94
+ + LR+P+HIS+LHVEQEV GDDTPA+ SVLE DT R++LL +E+ ++ I G A+
Sbjct: 223 LATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDTVREDLLRQERELSLRIAAGRAEG 282
Query: 95 NMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------- 146
+ + +L +++ +LE IEADKAPARASVILAGLGFTP+MQ++ T+ FSGGWR
Sbjct: 283 SEAAQLAEIYGKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARAL 342
Query: 147 ------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+
Sbjct: 343 FARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRL 402
Query: 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLE 248
D YRG++E F K K E+L NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE
Sbjct: 403 DGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLE 462
Query: 249 RLPELKPIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
+LPELKP++KE EVVLKFPD E SPPILQL EV+F Y P I + + + A LESRIC
Sbjct: 463 KLPELKPVDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHSIFSRLSVSADLESRIC 522
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG+NGAGK+T+LK++MG +SP G R HRNLK GYFSQHHV+QLD+N+ V+LL F
Sbjct: 523 VVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKF 582
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PG P+EEYR QLG +G+SG+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD
Sbjct: 583 PGLPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLD 642
Query: 428 IETIEALGKAINKY 441
+ETIEALG+A+N +
Sbjct: 643 METIEALGQALNNF 656
|
Mus musculus (taxid: 10090) |
| >sp|Q66H39|ABCF3_RAT ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 261/434 (60%), Positives = 330/434 (76%), Gaps = 27/434 (6%)
Query: 35 MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADA 94
+ + LR+P+HIS+LHVEQEV GDDTPA+ SVLE DT R++LL +E+ ++ I G A+
Sbjct: 223 LATRSLRVPAHISLLHVEQEVAGDDTPALQSVLESDTIREDLLRQERGLSLKIAAGRAEG 282
Query: 95 NMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------- 146
+ + L +V+ +LE IEADKAPARASVILAGLGFTP+MQ++ T+ FSGGWR
Sbjct: 283 SEAALLAEVYTKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARAL 342
Query: 147 ------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+
Sbjct: 343 FARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRL 402
Query: 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLE 248
D YRG++E F K K E+L NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE
Sbjct: 403 DGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLE 462
Query: 249 RLPELKPIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
+LPELKP++KE EVVLKFPD E SPPILQL EV+F Y P I + + + A LESRIC
Sbjct: 463 KLPELKPVDKESEVVLKFPDGFEKFSPPILQLDEVDFYYDPKHIIFSRLSVSADLESRIC 522
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG+NGAGK+T+LK++MG ++P G R HRNLK GYFSQHHV+QLD+N+ V+LL F
Sbjct: 523 VVGENGAGKSTMLKLLMGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKF 582
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PG+P+EEYR QLG +G+SG+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD
Sbjct: 583 PGRPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLD 642
Query: 428 IETIEALGKAINKY 441
+ETIEALG A+N +
Sbjct: 643 METIEALGHALNNF 656
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q5R9Z5|ABCF3_PONAB ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 257/434 (59%), Positives = 330/434 (76%), Gaps = 27/434 (6%)
Query: 35 MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADA 94
+ + LR+P+HIS+LHVEQEV DDTPA+ SVLE D+ R++LL RE+ ++ I G +
Sbjct: 223 LATRSLRVPAHISLLHVEQEVAEDDTPALQSVLESDSVREDLLRRERELSAHIAAGRVEG 282
Query: 95 NMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------- 146
+ + EL +++A+LE IEADKAPARASVILAGLGFTP+MQ++ T+ FSGGWR
Sbjct: 283 SEAAELAEIYAKLEEIEADKAPARASVILAGLGFTPKMQQQPTREFSGGWRMRLALARAL 342
Query: 147 ------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188
AI+WLENYLQ WP+T+LVVSHDR+FL+++ DI HLHSQR+
Sbjct: 343 FARPDLLLLDEPTNMLDVRAILWLENYLQTWPSTILVVSHDRNFLNAIAADIIHLHSQRL 402
Query: 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLE 248
D YRG++E F K K E+L NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE
Sbjct: 403 DGYRGDFETFIKSKQERLLNQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLE 462
Query: 249 RLPELKPIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
+LPELKP++KE EVV+KFPD E SPPILQL EV+F Y P I + + + A LESRIC
Sbjct: 463 KLPELKPVDKESEVVMKFPDGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRIC 522
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG+NGAGK+T+LK+++G ++P G R HRNLK GYFSQHHV+QLD+N+ V+LL F
Sbjct: 523 VVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKF 582
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PG+P+EEYR QLG +G+SG+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD
Sbjct: 583 PGRPEEEYRHQLGRYGISGELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLD 642
Query: 428 IETIEALGKAINKY 441
+ETIEALG+A+N +
Sbjct: 643 METIEALGRALNNF 656
|
Pongo abelii (taxid: 9601) |
| >sp|O59672|YB89_SCHPO Uncharacterized ABC transporter ATP-binding protein C29A3.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC29A3.09c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/451 (47%), Positives = 294/451 (65%), Gaps = 48/451 (10%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAIN---------- 88
++ IP+HI++LHVEQE+ GDDTPA+ SVL+ D R+ L+ ++ IT ++
Sbjct: 232 EIAIPTHITILHVEQEMTGDDTPALQSVLDADVWRKYLIQDQEKITNRLSTIEKELEELS 291
Query: 89 -NGTADANMSTELTQVFAELE-----------AIEADKAPARASVILAGLGFTPEMQKRA 136
+ TAD +S L + EL+ +++D+A +RA+ ILAGLGFT EMQ A
Sbjct: 292 KDQTADQAISRRLERERDELDLRLLDIQNKLSEMDSDRAESRAATILAGLGFTQEMQSHA 351
Query: 137 TKHFSGGWRKM--------------------------AIIWLENYLQNWPTTLLVVSHDR 170
TK FSGGWR +I +L YLQ + +LVVSHDR
Sbjct: 352 TKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAFLSEYLQTYKNIVLVVSHDR 411
Query: 171 HFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTF 230
FL+ V TDI H HS+R+D Y+GN+ F + E+ KNQ RE E Q +R+H+Q FID F
Sbjct: 412 SFLNEVATDIIHQHSERLDYYKGNFSQFYATREERCKNQLREYEKQMEYRKHLQSFIDKF 471
Query: 231 RYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGK 290
RYNA ++S QS+IK+LE+LP L+ + E EV +FP E +SPPILQ+S+VNFEYVPG
Sbjct: 472 RYNAAKSSEAQSRIKKLEKLPILEKPQTEEEVEFEFPPVEKISPPILQMSDVNFEYVPGH 531
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
PIL +V + ++SRI +VG NGAGK+T+LK+++ + PT+G + H L+ YF+QHHV
Sbjct: 532 PILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHV 591
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
D LD+NL + L FPGK +EEYRR LG FGVSG LALQ + +LSGGQKSRVAFA +
Sbjct: 592 DTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGPLALQKMITLSGGQKSRVAFACLG 651
Query: 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ P+ L+LDEPTNHLD+E+++AL +A+ ++
Sbjct: 652 LQNPHILILDEPTNHLDMESMDALTRAVKRF 682
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P43535|GCN20_YEAST Protein GCN20 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCN20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/448 (42%), Positives = 275/448 (61%), Gaps = 45/448 (10%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINN--------- 89
+L +P H+S+LHVEQE+ GDDT A+ SVL+ D R+ LL+ E I + +
Sbjct: 249 ELNVPKHVSILHVEQELRGDDTKALQSVLDADVWRKQLLSEEAKINERLKEMDVLRQEFE 308
Query: 90 ---------GTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHF 140
++ L Q+ +L +E+DKA ARA+ IL GLGF+ E Q++ T F
Sbjct: 309 EDSLEVKKLDNEREDLDNHLIQISDKLVDMESDKAEARAASILYGLGFSTEAQQQPTNSF 368
Query: 141 SGGWRKM--------------------------AIIWLENYLQNWPTTLLVVSHDRHFLD 174
SGGWR +I +L YL+ +P T+L VSHDR FL+
Sbjct: 369 SGGWRMRLSLARALFCQPDLLLLDEPSNMLDVPSIAYLAEYLKTYPNTVLTVSHDRAFLN 428
Query: 175 SVPTDIFHLHSQRIDTYRG-NYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYN 233
V TDI + H++R+D YRG +++ F K E+ KN QRE + Q ++R+H+Q+FID +RYN
Sbjct: 429 EVATDIIYQHNERLDYYRGQDFDTFYTTKEERRKNAQREYDNQMVYRKHLQEFIDKYRYN 488
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPIL 293
A ++ QS+IK+LE+LP L+P E++ + KFP+ + LSPPI+QL +V+F Y +L
Sbjct: 489 AAKSQEAQSRIKKLEKLPVLEPPEQDKTIDFKFPECDKLSPPIIQLQDVSFGYDENNLLL 548
Query: 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353
+V L ++SRI +VG NG GKTTLLKI+M + P G + + L+ GYF+QHHVD +
Sbjct: 549 KDVNLDVQMDSRIALVGANGCGKTTLLKIMMEQLRPLKGFVSRNPRLRIGYFTQHHVDSM 608
Query: 354 DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413
D+ V + +FPGK EEYRR LG FG++G L LQ + LSGGQKSRVAFA +C+
Sbjct: 609 DLTTSAVDWMSKSFPGKTDEEYRRHLGSFGITGTLGLQKMQLLSGGQKSRVAFAALCLNN 668
Query: 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441
P+ LVLDEP+NHLD ++AL +A+ +
Sbjct: 669 PHILVLDEPSNHLDTTGLDALVEALKNF 696
|
Positive effector of the eIF-2-alpha kinase activity of GCN2. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q8H0V6|AB3F_ARATH ABC transporter F family member 3 OS=Arabidopsis thaliana GN=ABCF3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 357 bits (917), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 189/435 (43%), Positives = 265/435 (60%), Gaps = 43/435 (9%)
Query: 42 IPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNRE--------KTITQAINNGTAD 93
IP++ +LHVEQEVVGD T A+ VL D +R LL E +T +G
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287
Query: 94 AN------MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRKM 147
+ MS L +++ L+AI+A A ARA+ ILAGL FTPEMQ +AT FSGGWR
Sbjct: 288 KDTVEGDLMSQRLEEIYKRLDAIDAYTAEARAASILAGLSFTPEMQLKATNTFSGGWRMR 347
Query: 148 --------------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIF 181
A++WLE YL WP T +VVSH R FL++V TDI
Sbjct: 348 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLTKWPKTFIVVSHAREFLNTVVTDII 407
Query: 182 HLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQ 241
HL +Q++ TY+GNY+ F++ + E++KNQQ+ E+ R H+Q FID FRYNA RAS VQ
Sbjct: 408 HLQNQKLSTYKGNYDIFERTREEQVKNQQKAFESSERSRSHMQAFIDKFRYNAKRASLVQ 467
Query: 242 SKIKQLERLPELKPIEKEVEVVLKFPD-TELLSPPILQLSEVNFEYVPGKPIL-TNVCLG 299
S+IK L+RL + + + + +FP + PPI+ S+ +F Y PG P+L N+ G
Sbjct: 468 SRIKALDRLAHVDQVINDPDYKFEFPTPDDKPGPPIISFSDASFGY-PGGPLLFRNLNFG 526
Query: 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC 359
L+SRI +VG NG GK+T+LK+I G + P++GT ++ FSQHHVD LD++
Sbjct: 527 IDLDSRIAMVGPNGIGKSTILKLISGDLQPSSGTVFRSAKVRVAVFSQHHVDGLDLSSNP 586
Query: 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
+ + +PG P+++ R LG GV+G+LALQ + +LSGGQKSRVAFA++ P+ L+L
Sbjct: 587 LLYMMRCYPGVPEQKLRSHLGSLGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHLLLL 646
Query: 420 DEPTNHLDIETIEAL 434
DEP+NHLD++ +EAL
Sbjct: 647 DEPSNHLDLDAVEAL 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8T6B4|ABCF4_DICDI ABC transporter F family member 4 OS=Dictyostelium discoideum GN=abcF4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 164/437 (37%), Positives = 251/437 (57%), Gaps = 35/437 (8%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQ--AINNG---TAD 93
++ I H+ VL+VEQEV GDDT +D VL D +R+ LL+ EK +T+ +N
Sbjct: 654 EITIAPHLRVLYVEQEVTGDDTTPLDCVLAADEERKWLLDEEKVLTELEKVNPSWQFDPR 713
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFT-PEMQKRATKHFSGGWRKM----- 147
+ L ++ L+ I+ADKA RA+ IL GLGFT E+ + ++ +SGGWR
Sbjct: 714 QKRNYSLRDIYDRLKEIDADKASIRAANILIGLGFTFEEISVKKSRDYSGGWRMRIALAR 773
Query: 148 ---------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
A +WLE YL W TLLVVSH+ FL+ V +I ++H Q
Sbjct: 774 ALFCKPEVLLLDEPSNHLDLHACVWLEKYLNQWDRTLLVVSHEASFLNEVVDNIIYIHDQ 833
Query: 187 RIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246
++D YRGNY+AF K K+ L+++++E + Q + + +FI T N +A S+ K+
Sbjct: 834 KLDQYRGNYDAFMKQKSVNLRSKEKEKDKQDRKLKKMNEFI-TKNKNNTQAKQAASRAKK 892
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKP-ILTNVCLGATLESR 305
+E++ ++ ++ +V+ FP E L+PP+L +V F Y G+P + + +G ++S+
Sbjct: 893 MEKIETIELEREDASLVVDFPQPEHLTPPLLVFKDVCFGYE-GRPTMFKKLDIGIDMDSK 951
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I +VG NG GK+TL+K++ G + T G R ++ FSQH VDQLD + ++ ++
Sbjct: 952 IALVGMNGVGKSTLMKLMNGDLHETTGYIERSRKMRVARFSQHFVDQLDTTMTPIEYFQS 1011
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
F P ++ R LG FG+ L L + +LSGGQKSRV A + A P+ L+LDEPTNH
Sbjct: 1012 KFNNPPVQQIRNHLGRFGICNSLPLHKITTLSGGQKSRVILAELAWAEPHILLLDEPTNH 1071
Query: 426 LDIETIEALGKAINKYT 442
LDI+ IEAL + IN +T
Sbjct: 1072 LDIDAIEALAEGINAFT 1088
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9FJH6|AB1F_ARATH ABC transporter F family member 1 OS=Arabidopsis thaliana GN=ABCF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 147/433 (33%), Positives = 242/433 (55%), Gaps = 36/433 (8%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98
++ IP + + H+ E+ D ++++V+ CD +R L + + Q + G
Sbjct: 118 EIPIPDQMDIYHLSHEIEATDMSSLEAVVSCDEERLRLEKEVEILVQQDDGG------GE 171
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRKM----------- 147
L ++ L+A++A+ A RA+ IL GLGF EMQ + TK FSGGWR
Sbjct: 172 RLQSIYERLDAMDAETAEKRAAEILFGLGFDKEMQAKKTKDFSGGWRMRIALARALFIMP 231
Query: 148 ---------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYR 192
A +WLE L+N+ L+VVSH + FL+ V T+I H+ S+++ Y
Sbjct: 232 TILLLDEPTNHLDLEACVWLEESLKNFDRILVVVSHSQDFLNGVCTNIIHMQSKQLKYYT 291
Query: 193 GNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYN----ANRASSVQSKIKQLE 248
GN++ + + ++E +NQ ++ ++ H++++I F + A +A S + + ++E
Sbjct: 292 GNFDQYCQTRSELEENQMKQYRWEQEQISHMKEYIARFGHGSAKLARQAQSKEKTLAKME 351
Query: 249 RLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICI 308
R + + ++ +V +F D L PP+LQ EV+F Y P I N+ G L+SR+ +
Sbjct: 352 RGGLTEKVARDSVLVFRFADVGKLPPPVLQFVEVSFGYTPDYLIYKNIDFGVDLDSRVAL 411
Query: 309 VGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368
VG NGAGK+TLLK++ G + PT G H +LK + QH ++LD+ L + + FP
Sbjct: 412 VGPNGAGKSTLLKLMTGELHPTEGMVRRHNHLKIAQYHQHLAEKLDLELPALLYMMREFP 471
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G +E+ R +G FG++G + + +LS GQ+SRV FA + PN L+LDEPTNHLDI
Sbjct: 472 GTEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQRSRVIFAWLAYKQPNMLLLDEPTNHLDI 531
Query: 429 ETIEALGKAINKY 441
ETI++L +A+N++
Sbjct: 532 ETIDSLAEALNEW 544
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1H3|AB4F_ARATH ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (711), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 171/457 (37%), Positives = 255/457 (55%), Gaps = 55/457 (12%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98
++ +P +I VL VEQEVVGD+ A+++V+ + + L E Q ++G N+
Sbjct: 212 KIPVPKNIDVLLVEQEVVGDEKSALNAVVSANEELVKL-REEAEALQKSSSGADGENVDG 270
Query: 99 --------ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRKM--- 147
+L +++ L+ + +D A A+AS ILAGLGFT +MQ RAT+ FSGGWR
Sbjct: 271 EDDDDTGEKLAELYDRLQILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISL 330
Query: 148 -----------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLH 184
A++WLE YL W TL+VVSHDR FL++V T+I HLH
Sbjct: 331 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH 390
Query: 185 SQRIDTYRGNYEAFDKIKTEKLKNQQREIE--------AQRM-HREHVQKFIDTFRYNAN 235
Q + YRGN++ F+ ++ K ++ + A+R +R +K D ++ A
Sbjct: 391 DQNLHFYRGNFDGFESGYEQRRKEMNKKFDVYDKQMKAAKRTGNRGQQEKVKDRAKFTAA 450
Query: 236 R-ASSVQSKIKQLER---LPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKP 291
+ AS +SK K ++ PE ++ VV FP+ L+PP+LQL EV+F Y P +P
Sbjct: 451 KEASKSKSKGKTVDEEGPAPEAPRKWRDYSVVFHFPEPTELTPPLLQLIEVSFSY-PNRP 509
Query: 292 I--LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHH 349
L+NV +G + +R+ IVG NGAGK+TLL ++ G + PT G + L+ G +SQH
Sbjct: 510 DFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHF 569
Query: 350 VDQLDMNLRCVQLLEAAFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
VD L M VQ L P + QE R +LG FG+ L + LSGGQK+RV
Sbjct: 570 VDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSGGQKARVV 629
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
F + M+ P+ L+LDEPTNHLD+++I+AL A++++T
Sbjct: 630 FTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT 666
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| 328713638 | 715 | PREDICTED: ATP-binding cassette sub-fami | 0.920 | 0.570 | 0.743 | 0.0 | |
| 91090594 | 706 | PREDICTED: similar to ATP-dependent tran | 0.920 | 0.577 | 0.731 | 0.0 | |
| 242003265 | 694 | protein GCN20, putative [Pediculus human | 0.916 | 0.585 | 0.706 | 1e-178 | |
| 158300669 | 735 | AGAP012005-PA [Anopheles gambiae str. PE | 0.920 | 0.555 | 0.678 | 1e-172 | |
| 312377643 | 728 | hypothetical protein AND_10992 [Anophele | 0.920 | 0.560 | 0.680 | 1e-172 | |
| 269115420 | 709 | putative ATP-dependent transporter [Maye | 0.920 | 0.575 | 0.666 | 1e-169 | |
| 157125966 | 712 | ATP-dependent transporter [Aedes aegypti | 0.920 | 0.573 | 0.668 | 1e-169 | |
| 194874179 | 708 | GG16045 [Drosophila erecta] gi|190655137 | 0.909 | 0.569 | 0.658 | 1e-164 | |
| 194751487 | 708 | GF23707 [Drosophila ananassae] gi|190625 | 0.909 | 0.569 | 0.658 | 1e-164 | |
| 195591557 | 708 | GD14814 [Drosophila simulans] gi|1941975 | 0.909 | 0.569 | 0.656 | 1e-163 |
| >gi|328713638|ref|XP_001946527.2| PREDICTED: ATP-binding cassette sub-family F member 3-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/436 (74%), Positives = 359/436 (82%), Gaps = 28/436 (6%)
Query: 35 MVSG-QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNG-TA 92
M+SG QLRIPSHIS+LHVEQEVVGDDTPA++SVLECD R LL REK I I +G TA
Sbjct: 229 MISGGQLRIPSHISILHVEQEVVGDDTPALESVLECDFVRHGLLTREKEINTLIADGSTA 288
Query: 93 DANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR------- 145
A +S+EL++++ +L AIEADKAPARASVIL GLGF P+MQK+ATKHFSGGWR
Sbjct: 289 SAELSSELSEIYMQLSAIEADKAPARASVILDGLGFNPDMQKKATKHFSGGWRMRLALAR 348
Query: 146 -------------------KMAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
AIIWLENYLQ W +TLLVVSHDRHFLD+VPTDI HLHSQ
Sbjct: 349 ALFSKPDLLLLDEPTNMLDMKAIIWLENYLQTWQSTLLVVSHDRHFLDTVPTDILHLHSQ 408
Query: 187 RIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246
RIDTYRGNYE F+K K EKLKNQQREIEAQ HR HVQ+FID FRYNANRASSVQSKIK
Sbjct: 409 RIDTYRGNYEIFEKTKNEKLKNQQREIEAQMAHRAHVQEFIDRFRYNANRASSVQSKIKM 468
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRI 306
LE+LPELKPIEKEVEVVL+FP+TE LSPPILQL +++F Y +L NV LGATLESRI
Sbjct: 469 LEKLPELKPIEKEVEVVLRFPETEGLSPPILQLDDISFAYPGCNNVLQNVNLGATLESRI 528
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
CIVGDNGAGKTTLLKIIMGI++ TAG R VHR+LKFGYFSQHHVDQL+MNL V+LL+++
Sbjct: 529 CIVGDNGAGKTTLLKIIMGILNTTAGVRNVHRSLKFGYFSQHHVDQLEMNLSSVELLQSS 588
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
FPGK EEYRRQLGGFG+SGDLALQ VGSLSGGQKSRVAFARMCM+ PNFLVLDEPTNHL
Sbjct: 589 FPGKTVEEYRRQLGGFGISGDLALQSVGSLSGGQKSRVAFARMCMSNPNFLVLDEPTNHL 648
Query: 427 DIETIEALGKAINKYT 442
DIETIEALGKAI KYT
Sbjct: 649 DIETIEALGKAIQKYT 664
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090594|ref|XP_972814.1| PREDICTED: similar to ATP-dependent transporter [Tribolium castaneum] gi|270013337|gb|EFA09785.1| hypothetical protein TcasGA2_TC011927 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/435 (73%), Positives = 358/435 (82%), Gaps = 27/435 (6%)
Query: 35 MVS-GQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTAD 93
M+S GQLRIPSHIS+LHVEQEV+GDDT AI SVLECDT R++LL REK I+ A+N+G +D
Sbjct: 222 MISNGQLRIPSHISILHVEQEVIGDDTLAIQSVLECDTVRESLLKREKEISAAVNSGNSD 281
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------- 146
+S +LT+++A+L+ IEADKAPA+AS+IL GLGFTPEMQ+R TK FSGGWR
Sbjct: 282 PELSNQLTEIYAQLQNIEADKAPAKASIILNGLGFTPEMQQRETKTFSGGWRMRLALARA 341
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
AIIWLENYLQNWPTTLLVVSHDR+FLD+VPTDI HLHSQR
Sbjct: 342 LFSRPDLLLLDEPTNMLDIKAIIWLENYLQNWPTTLLVVSHDRNFLDTVPTDILHLHSQR 401
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
ID YRGNYE F+K KTEKLKNQQRE EAQ HR+HVQ FID FRYNANRA+SVQSKIK L
Sbjct: 402 IDAYRGNYEQFEKTKTEKLKNQQREYEAQMQHRQHVQVFIDKFRYNANRAASVQSKIKLL 461
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
++LPELKPIEKE VVLKFPDTE LSPPILQL+EV+F Y + I TNV LGAT++SRIC
Sbjct: 462 DKLPELKPIEKETAVVLKFPDTEPLSPPILQLNEVSFGYNKDRLIFTNVNLGATMDSRIC 521
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
IVGDNGAGKTTLLKIIMG++SP+AG VHRNLKFGYFSQHHVDQLDMN+ V+LL++ +
Sbjct: 522 IVGDNGAGKTTLLKIIMGLLSPSAGMLHVHRNLKFGYFSQHHVDQLDMNVNSVELLQSTY 581
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PGKP EEYRRQLG FGVSGDLALQ V SLSGGQKSRVAFARMCM PNFLVLDEPTNHLD
Sbjct: 582 PGKPIEEYRRQLGSFGVSGDLALQTVASLSGGQKSRVAFARMCMGNPNFLVLDEPTNHLD 641
Query: 428 IETIEALGKAINKYT 442
IETIEALG AI K+T
Sbjct: 642 IETIEALGNAIVKFT 656
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242003265|ref|XP_002422673.1| protein GCN20, putative [Pediculus humanus corporis] gi|212505484|gb|EEB09935.1| protein GCN20, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 305/432 (70%), Positives = 347/432 (80%), Gaps = 26/432 (6%)
Query: 37 SGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANM 96
S QL IPSHISVLHVEQEV GDDT A++SVLE DT R LL EK +T +N GT+D+ +
Sbjct: 224 SKQLAIPSHISVLHVEQEVTGDDTTALESVLESDTVRTQLLKEEKELTTLLNAGTSDSQV 283
Query: 97 STELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------- 146
ST L++V+++L+ IEA+KAPARAS+IL GLGFT EMQ+RATK FSGGWR
Sbjct: 284 STRLSEVYSKLQHIEAEKAPARASIILNGLGFTKEMQERATKTFSGGWRMRLALARALFS 343
Query: 147 ----------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDT 190
AIIWLENYLQNWPTTLLVVSHDR+FL++VPTDI HLHSQRI++
Sbjct: 344 KPDLLLLDEPTNMLDIKAIIWLENYLQNWPTTLLVVSHDRNFLETVPTDILHLHSQRIES 403
Query: 191 YRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERL 250
YRGNY F+K KT+KLKNQQRE EAQ+ HR HVQ+FID FRYNANRASSVQSKIK LE+L
Sbjct: 404 YRGNYGTFEKTKTDKLKNQQREFEAQQQHRAHVQEFIDRFRYNANRASSVQSKIKMLEKL 463
Query: 251 PELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVG 310
PELKP+EKE EVVLKFP+T+ LSPPILQL+EV+F Y P I NV L ATLESRICIVG
Sbjct: 464 PELKPVEKETEVVLKFPETDALSPPILQLNEVSFYYTPNNVIFNNVNLSATLESRICIVG 523
Query: 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370
+NGAGKTTLLKI+MGI++PT G R VHRNLKFGYFSQHHVDQLDM V+LL++ PGK
Sbjct: 524 ENGAGKTTLLKIVMGILNPTKGLRHVHRNLKFGYFSQHHVDQLDMTQNSVELLQSTAPGK 583
Query: 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
EEYRRQLG FG+SGDLALQ + SLSGGQKSRVAFARMC+ PNFLVLDEPTNHLDIE+
Sbjct: 584 RIEEYRRQLGSFGISGDLALQQIASLSGGQKSRVAFARMCLGNPNFLVLDEPTNHLDIES 643
Query: 431 IEALGKAINKYT 442
IEALGKAI KYT
Sbjct: 644 IEALGKAIQKYT 655
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158300669|ref|XP_320530.4| AGAP012005-PA [Anopheles gambiae str. PEST] gi|157013272|gb|EAA00437.5| AGAP012005-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 295/435 (67%), Positives = 343/435 (78%), Gaps = 27/435 (6%)
Query: 35 MVSG-QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTAD 93
M+SG QL+IPSHISVLHVEQEVVGDDT A+DSVLE DT R LL RE+ + I G+ D
Sbjct: 250 MISGKQLQIPSHISVLHVEQEVVGDDTTALDSVLEVDTVRTELLQRERDLNAQIAAGSTD 309
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------- 146
AN+ EL++V+ +L+ IEADKAPARAS+IL GLGFT EMQ RAT+ FSGGWR
Sbjct: 310 ANLGNELSEVYNQLQTIEADKAPARASIILNGLGFTKEMQARATRTFSGGWRMRLALARA 369
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
AIIWLENYLQNWPTTLLVVSHDR+FLD+VPTDI +LHS R
Sbjct: 370 LFSKPELLLLDEPTNMLDIKAIIWLENYLQNWPTTLLVVSHDRNFLDTVPTDILYLHSMR 429
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
I+T++GNYE FDK +TE+ K Q+RE EAQ HR HVQ+FID FRYNANRA+SVQSKIK L
Sbjct: 430 IETFKGNYEQFDKTRTERHKAQRREYEAQLAHRNHVQEFIDRFRYNANRAASVQSKIKML 489
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
E+LPELKP+EKE+EV LKFP+ E L+PP++ L+EV F+Y K I T+V LGA L+SRIC
Sbjct: 490 EKLPELKPVEKEIEVTLKFPEVEPLNPPVMTLNEVQFKYSADKVIFTSVNLGANLDSRIC 549
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
IVG+NGAGKTTLLKI++G++ PT G +HR L+ GYFSQHHVDQLDM + V+LL+ A+
Sbjct: 550 IVGENGAGKTTLLKIVVGLLQPTGGLVQMHRGLRLGYFSQHHVDQLDMTVNSVELLQNAY 609
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PGKP EEYRR LG FGVSGDLALQ V SLSGGQKSRVAFA+MCM PNFLVLDEPTNHLD
Sbjct: 610 PGKPIEEYRRVLGSFGVSGDLALQVVASLSGGQKSRVAFAKMCMGRPNFLVLDEPTNHLD 669
Query: 428 IETIEALGKAINKYT 442
IETIEALGKAINKYT
Sbjct: 670 IETIEALGKAINKYT 684
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312377643|gb|EFR24426.1| hypothetical protein AND_10992 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/435 (68%), Positives = 343/435 (78%), Gaps = 27/435 (6%)
Query: 35 MVSG-QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTAD 93
M+SG QL+IPSHI+VLHVEQEVVGDDT A+DSVLE DT R LL RE+ + + I G+AD
Sbjct: 243 MISGKQLQIPSHITVLHVEQEVVGDDTTALDSVLEVDTVRTELLERERELNRLIAAGSAD 302
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------- 146
AN STEL++V+ L IEADKAPARAS+IL GLGFT EMQ RAT+ FSGGWR
Sbjct: 303 ANHSTELSEVYNHLLMIEADKAPARASIILNGLGFTKEMQARATRTFSGGWRMRLALARA 362
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
AIIWLENYLQNWPTTLLVVSHDR+FLD+VPTDI +LHS R
Sbjct: 363 LFSKPDLLLLDEPTNMLDIKAIIWLENYLQNWPTTLLVVSHDRNFLDTVPTDILYLHSLR 422
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
I+T++GNYE FDK +TE+ K Q+RE EAQ HR HVQ+FID FRYNANRA+SVQSKIK L
Sbjct: 423 IETFKGNYEQFDKTRTERHKAQRREYEAQLAHRNHVQEFIDRFRYNANRAASVQSKIKML 482
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
E+LPELKP+EKE+EV LKFP+ E L+PP+L L++V F Y GK I T V L A L+SRIC
Sbjct: 483 EKLPELKPVEKEIEVTLKFPEVEPLNPPVLTLTDVQFRYSDGKVIFTTVNLSANLDSRIC 542
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
IVG+NGAGKTTLLKI++G++ PT G +HR ++ GYFSQHHVDQLDM++ CV+LL+ A+
Sbjct: 543 IVGENGAGKTTLLKIVVGLLEPTGGLLHMHRGVRLGYFSQHHVDQLDMSVNCVELLQNAY 602
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PGKP EEYRR LG FGVSGDLALQ V SLSGGQKSRVA A+MCM PNFLVLDEPTNHLD
Sbjct: 603 PGKPIEEYRRVLGSFGVSGDLALQVVASLSGGQKSRVALAKMCMGRPNFLVLDEPTNHLD 662
Query: 428 IETIEALGKAINKYT 442
IETIEALGKAINKYT
Sbjct: 663 IETIEALGKAINKYT 677
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|269115420|gb|ACZ26286.1| putative ATP-dependent transporter [Mayetiola destructor] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/435 (66%), Positives = 338/435 (77%), Gaps = 27/435 (6%)
Query: 35 MVSG-QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTAD 93
M+SG QL+IP++IS+LHVEQEV+GDDT A++SVLECD +R LL EK I IN G+ D
Sbjct: 224 MISGKQLKIPAYISILHVEQEVIGDDTTALNSVLECDFERARLLAEEKEINSQINAGSTD 283
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------- 146
++ LT V+A LE IE+DKAPARASVIL GLGF +MQ RATK FSGGWR
Sbjct: 284 ITLNKRLTDVYAALENIESDKAPARASVILNGLGFLGDMQSRATKTFSGGWRMRLALARA 343
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
AIIWLENYLQNWPTTLLVVSHDR+FLD+VPTDI HLHSQR
Sbjct: 344 LFSKPDLLLLDEPTNMLDIKAIIWLENYLQNWPTTLLVVSHDRNFLDTVPTDILHLHSQR 403
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
ID YRGNY+ FDK +TEK+K Q+RE EAQ HR+HVQ+FID FRYNANRA+SVQSKIK L
Sbjct: 404 IDVYRGNYDQFDKTRTEKMKAQRREYEAQLAHRQHVQEFIDRFRYNANRAASVQSKIKML 463
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
E+LPELKP+EKE+EVVLKFP+ E L+PP+L L+E+ F+Y P K I T V L A L+SRIC
Sbjct: 464 EKLPELKPVEKEIEVVLKFPEVEPLNPPVLTLNEIAFKYSPEKVIFTCVNLCANLDSRIC 523
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
IVG+NGAGKTTLLKIIMG +PT G T+HR LKFGYF+QHHVDQL+MN CV LL+ AF
Sbjct: 524 IVGENGAGKTTLLKIIMGFNTPTGGDMTMHRGLKFGYFAQHHVDQLNMNTTCVGLLQEAF 583
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PG+P EEYRR LG FG+SGDLALQ V SLSGGQKSRV A+MCM+ PNFLVLDEPTNHLD
Sbjct: 584 PGRPIEEYRRHLGSFGISGDLALQLVASLSGGQKSRVTLAKMCMSRPNFLVLDEPTNHLD 643
Query: 428 IETIEALGKAINKYT 442
++ + ALGKAI +T
Sbjct: 644 LDHVGALGKAIQTFT 658
|
Source: Mayetiola destructor Species: Mayetiola destructor Genus: Mayetiola Family: Cecidomyiidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157125966|ref|XP_001654470.1| ATP-dependent transporter [Aedes aegypti] gi|108873444|gb|EAT37669.1| AAEL010359-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/435 (66%), Positives = 339/435 (77%), Gaps = 27/435 (6%)
Query: 35 MVSG-QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTAD 93
M+SG QL+IPSHI++LHVEQEVVGDDT AIDSVLE D R LL +EK + IN G++D
Sbjct: 227 MISGKQLQIPSHITILHVEQEVVGDDTLAIDSVLEVDEVRTELLRKEKELNAQINAGSSD 286
Query: 94 ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------- 146
++S EL++++ +L+ IEADKAPARAS+IL GLGFT EMQ RAT+ FSGGWR
Sbjct: 287 PDLSHELSEIYVQLQNIEADKAPARASIILNGLGFTKEMQARATRTFSGGWRMRLALARA 346
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
AIIWLENYLQ WPTTLLVVSHDR+FLD+VPTDI +LHSQR
Sbjct: 347 LFSKPDLLLLDEPTNMLDIKAIIWLENYLQTWPTTLLVVSHDRNFLDTVPTDILYLHSQR 406
Query: 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247
ID Y+GNYE FDK +TEK K Q+RE EAQ HR HVQ+FID FRYNANRA+SVQSKIK L
Sbjct: 407 IDVYKGNYEQFDKTRTEKHKAQRREYEAQLAHRNHVQEFIDRFRYNANRAASVQSKIKML 466
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
E+LPELKP+EKE+EV +KFP+ E L+PP+LQL+EV F+Y K I V L A L+SRIC
Sbjct: 467 EKLPELKPVEKEIEVTIKFPEVEPLNPPVLQLNEVQFKYSNDKVIFNLVNLSANLDSRIC 526
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
IVG+NGAGKTTLLKII G + PT G HR L+ GYF+QHHVDQLDM++ CV+LL+ A+
Sbjct: 527 IVGENGAGKTTLLKIITGHLQPTGGLIHPHRGLRLGYFAQHHVDQLDMSVNCVELLQNAY 586
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
PGKP EEYRR LG FGVSGDLA+Q V SLSGGQKSRVA A+MCM PNFLVLDEPTNHLD
Sbjct: 587 PGKPIEEYRRVLGSFGVSGDLAMQVVASLSGGQKSRVALAKMCMGRPNFLVLDEPTNHLD 646
Query: 428 IETIEALGKAINKYT 442
IETIEALGKAINKY+
Sbjct: 647 IETIEALGKAINKYS 661
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194874179|ref|XP_001973354.1| GG16045 [Drosophila erecta] gi|190655137|gb|EDV52380.1| GG16045 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/431 (65%), Positives = 328/431 (76%), Gaps = 28/431 (6%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98
QL+IPSHISVLHVEQEVVGDDTPA++SVLECDT+R LLNREK I A+NNG DA +S
Sbjct: 227 QLQIPSHISVLHVEQEVVGDDTPAVESVLECDTERTRLLNREKEILAALNNGVQDAALSN 286
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------ 146
EL++ +A L+ IEADKA ARASVIL GLGF +MQ R TK FSGGWR
Sbjct: 287 ELSETYASLQNIEADKAVARASVILKGLGFDADMQLRPTKSFSGGWRMRLALARALFSKP 346
Query: 147 --------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYR 192
AIIWLENYLQ W TT+LVVSHDR+FLD+VPTDI HLHSQ ++ Y+
Sbjct: 347 DLLLLDEPTNMLDIKAIIWLENYLQTWATTILVVSHDRNFLDTVPTDIIHLHSQELEAYK 406
Query: 193 GNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPE 252
GNYE F+K KTEKLK+Q+RE EAQ HR HVQ FID FRYNANRASSVQSKIK LE+LPE
Sbjct: 407 GNYEQFEKTKTEKLKSQRREYEAQMAHRAHVQDFIDRFRYNANRASSVQSKIKMLEKLPE 466
Query: 253 LKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGK--PILTNVCLGATLESRICIVG 310
LKP+EKE V LKFP+ E L+PP+L +SEV F Y P PI V L AT +SRICIVG
Sbjct: 467 LKPVEKETVVTLKFPEVEPLNPPVLAISEVTFRYNPEDPLPIFKGVNLSATSDSRICIVG 526
Query: 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370
+NGAGK+TLLKII+G +S G +HR L+ GYF+QHHVD L+MN+ CV +L FPG+
Sbjct: 527 ENGAGKSTLLKIIVGQLSTIYGNIVLHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGR 586
Query: 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
P EEYRRQLG FG+SG LALQ + SLSGGQKSRVA A+MCMA PNFLVLDEPTNHLDIET
Sbjct: 587 PDEEYRRQLGSFGISGPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIET 646
Query: 431 IEALGKAINKY 441
I+ALG+AIN +
Sbjct: 647 IDALGRAINAF 657
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194751487|ref|XP_001958058.1| GF23707 [Drosophila ananassae] gi|190625340|gb|EDV40864.1| GF23707 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/431 (65%), Positives = 329/431 (76%), Gaps = 28/431 (6%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98
QL+IPSHISVLHVEQEVVGDDT A+DSVLECDT+R LL+REK I A+NNG DA +S+
Sbjct: 227 QLQIPSHISVLHVEQEVVGDDTAAVDSVLECDTERTRLLDREKEILAALNNGVQDAALSS 286
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------ 146
EL++ +A L+ IEADKA ARASVIL GLGF +MQ R TK FSGGWR
Sbjct: 287 ELSETYAALQNIEADKAVARASVILKGLGFDADMQLRPTKSFSGGWRMRLALARALFSKP 346
Query: 147 --------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYR 192
AIIWLENYLQ WPTT+LVVSHDR+FLD+VPTDI HLHSQ ++ Y+
Sbjct: 347 DLLLLDEPTNMLDIKAIIWLENYLQTWPTTILVVSHDRNFLDTVPTDIIHLHSQELEAYK 406
Query: 193 GNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPE 252
GNYE F+K KTEKLK Q+RE EAQ HR HVQ+FID FRYNANRASSVQSKIK LE+LPE
Sbjct: 407 GNYEQFEKTKTEKLKAQRREYEAQMAHRAHVQEFIDRFRYNANRASSVQSKIKMLEKLPE 466
Query: 253 LKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGK--PILTNVCLGATLESRICIVG 310
LKP+EKE V LKFPD E L+PP++ +SEV+F Y PI V L AT +SRICIVG
Sbjct: 467 LKPVEKETVVTLKFPDVEPLNPPVMAISEVSFRYNQEDPLPIFKGVNLSATSDSRICIVG 526
Query: 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370
+NGAGK+TLLKII+G +S G +HR L+ GYF+QHHVD L+MN+ CV +L FPG+
Sbjct: 527 ENGAGKSTLLKIIVGQLSTIHGNIVMHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGR 586
Query: 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
P EEYRRQLG FG+SG LALQ + SLSGGQKSRVA A+MCMA PNFLVLDEPTNHLDIET
Sbjct: 587 PDEEYRRQLGSFGISGPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIET 646
Query: 431 IEALGKAINKY 441
I+ALGKAIN +
Sbjct: 647 IDALGKAINAF 657
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195591557|ref|XP_002085506.1| GD14814 [Drosophila simulans] gi|194197515|gb|EDX11091.1| GD14814 [Drosophila simulans] | Back alignment and taxonomy information |
|---|
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/431 (65%), Positives = 328/431 (76%), Gaps = 28/431 (6%)
Query: 39 QLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98
QL+IPSHISVLHVEQEVVGDDTPA++SVLECDT+R LL REK I A+NNG DA++S
Sbjct: 227 QLQIPSHISVLHVEQEVVGDDTPAVESVLECDTERMRLLTREKEILAALNNGVQDASLSN 286
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------ 146
EL++ +A L+ IEADKA ARASVIL GLGF +MQ R TK FSGGWR
Sbjct: 287 ELSETYASLQNIEADKAVARASVILKGLGFDADMQLRPTKSFSGGWRMRLALARALFSKP 346
Query: 147 --------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYR 192
AIIWLENYLQ W TT+LVVSHDR+FLD+VPTDI HLHSQ ++ Y+
Sbjct: 347 DLLLLDEPTNMLDIKAIIWLENYLQTWATTILVVSHDRNFLDTVPTDIIHLHSQELEAYK 406
Query: 193 GNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPE 252
GNYE F+K KTEKLK+Q+RE EAQ HR HVQ FID FRYNANRASSVQSKIK LE+LPE
Sbjct: 407 GNYEQFEKTKTEKLKSQRREYEAQMAHRAHVQDFIDRFRYNANRASSVQSKIKMLEKLPE 466
Query: 253 LKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGK--PILTNVCLGATLESRICIVG 310
LKP+EKE V LKFP+ E L+PP+L +SEV F Y P PI V L AT +SRICIVG
Sbjct: 467 LKPVEKETVVTLKFPEVEPLNPPVLAISEVTFRYNPEDPLPIFKGVNLSATSDSRICIVG 526
Query: 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370
+NGAGK+TLLKII+G +S G +HR L+ GYF+QHHVD L+MN+ CV +L FPG+
Sbjct: 527 ENGAGKSTLLKIIVGQLSTIHGNIVLHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGR 586
Query: 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
P EEYRRQLG FG+SG LALQ + SLSGGQKSRVA A+MCMA PNFLVLDEPTNHLDIET
Sbjct: 587 PDEEYRRQLGSFGISGPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIET 646
Query: 431 IEALGKAINKY 441
I+ALG+AIN +
Sbjct: 647 IDALGRAINAF 657
|
Source: Drosophila simulans Species: Drosophila simulans Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| UNIPROTKB|A4FUE2 | 709 | ABCF3 "Uncharacterized protein | 0.663 | 0.414 | 0.657 | 7e-143 | |
| UNIPROTKB|E2RS26 | 709 | ABCF3 "Uncharacterized protein | 0.663 | 0.414 | 0.657 | 7e-143 | |
| UNIPROTKB|I3LB03 | 712 | ABCF3 "Uncharacterized protein | 0.663 | 0.412 | 0.657 | 7e-143 | |
| UNIPROTKB|Q9NUQ8 | 709 | ABCF3 "ATP-binding cassette su | 0.663 | 0.414 | 0.650 | 3.8e-142 | |
| MGI|MGI:1351656 | 709 | Abcf3 "ATP-binding cassette, s | 0.663 | 0.414 | 0.664 | 1.3e-141 | |
| RGD|1310468 | 709 | Abcf3 "ATP-binding cassette, s | 0.663 | 0.414 | 0.661 | 1.2e-140 | |
| FB|FBgn0036888 | 708 | CG9330 [Drosophila melanogaste | 0.663 | 0.415 | 0.699 | 3.8e-110 | |
| UNIPROTKB|F1P0V5 | 714 | ABCF3 "Uncharacterized protein | 0.663 | 0.411 | 0.677 | 1.3e-109 | |
| POMBASE|SPBC29A3.09c | 736 | SPBC29A3.09c "AAA family ATPas | 0.663 | 0.399 | 0.537 | 3e-95 | |
| UNIPROTKB|G4NB88 | 750 | MGG_11547 "Uncharacterized pro | 0.663 | 0.392 | 0.532 | 8.9e-94 |
| UNIPROTKB|A4FUE2 ABCF3 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 7.0e-143, Sum P(2) = 7.0e-143
Identities = 194/295 (65%), Positives = 244/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 362 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE+EVV+KFP
Sbjct: 422 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKELEVVMKFP 481
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK++MG
Sbjct: 482 DGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGD 541
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG+P+EEYR QLG +G+SG
Sbjct: 542 LTPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISG 601
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG+A+N +
Sbjct: 602 ELAVRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNF 656
|
|
| UNIPROTKB|E2RS26 ABCF3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 7.0e-143, Sum P(2) = 7.0e-143
Identities = 194/295 (65%), Positives = 244/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 362 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE+EVV+KFP
Sbjct: 422 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKEMEVVMKFP 481
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK++MG
Sbjct: 482 DGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGD 541
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG+P+EEYR QLG +G+SG
Sbjct: 542 LAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISG 601
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG+A+N +
Sbjct: 602 ELAVRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNF 656
|
|
| UNIPROTKB|I3LB03 ABCF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1056 (376.8 bits), Expect = 7.0e-143, Sum P(2) = 7.0e-143
Identities = 194/295 (65%), Positives = 244/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 365 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 424
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE+EVV+KFP
Sbjct: 425 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKELEVVMKFP 484
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK++MG
Sbjct: 485 DGFEKFSPPILQLDEVDFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGD 544
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG+P+EEYR QLG +G+SG
Sbjct: 545 LAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISG 604
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG+A+N +
Sbjct: 605 ELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNF 659
|
|
| UNIPROTKB|Q9NUQ8 ABCF3 "ATP-binding cassette sub-family F member 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1048 (374.0 bits), Expect = 3.8e-142, Sum P(2) = 3.8e-142
Identities = 192/295 (65%), Positives = 243/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 362 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE EVV+KFP
Sbjct: 422 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVMKFP 481
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK+++G
Sbjct: 482 DGFEKFSPPILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGD 541
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG+P+EEYR QLG +G+SG
Sbjct: 542 LAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISG 601
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ + SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG+A+N +
Sbjct: 602 ELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNF 656
|
|
| MGI|MGI:1351656 Abcf3 "ATP-binding cassette, sub-family F (GCN20), member 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1055 (376.4 bits), Expect = 1.3e-141, Sum P(2) = 1.3e-141
Identities = 196/295 (66%), Positives = 242/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 362 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE EVVLKFP
Sbjct: 422 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFP 481
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK++MG
Sbjct: 482 DGFEKFSPPILQLDEVDFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGD 541
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
+SP G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG P+EEYR QLG +G+SG
Sbjct: 542 LSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISG 601
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG+A+N +
Sbjct: 602 ELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGQALNNF 656
|
|
| RGD|1310468 Abcf3 "ATP-binding cassette, subfamily F (GCN20), member 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 1.2e-140, Sum P(2) = 1.2e-140
Identities = 195/295 (66%), Positives = 242/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ WP+T+LVVSHDR+FL+++ TDI HLHSQR+D YRG++E F K K E+L
Sbjct: 362 AILWLENYLQTWPSTILVVSHDRNFLNAIATDIIHLHSQRLDGYRGDFETFIKSKQERLL 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +R+H+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE EVVLKFP
Sbjct: 422 NQQREYEAQQQYRQHIQVFIDRFRYNANRASQVQSKLKMLEKLPELKPVDKESEVVLKFP 481
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I + + + A LESRIC+VG+NGAGK+T+LK++MG
Sbjct: 482 DGFEKFSPPILQLDEVDFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGD 541
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHV+QLD+N+ V+LL FPG+P+EEYR QLG +G+SG
Sbjct: 542 LAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISG 601
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M PNF +LDEPTNHLD+ETIEALG A+N +
Sbjct: 602 ELAMRPVASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGHALNNF 656
|
|
| FB|FBgn0036888 CG9330 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1088 (388.1 bits), Expect = 3.8e-110, P = 3.8e-110
Identities = 207/296 (69%), Positives = 240/296 (81%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AIIWLENYLQ W TT+LVVSHDR+FLD+VPTDI HLHSQ ++ Y+GNYE F+K KTEKLK
Sbjct: 362 AIIWLENYLQTWATTILVVSHDRNFLDTVPTDIIHLHSQELEAYKGNYEQFEKTKTEKLK 421
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
+Q+RE EAQ HR HVQ FID FRYNANRASSVQSKIK LE+LPELKP+EKE V LKFP
Sbjct: 422 SQRREYEAQMAHRAHVQDFIDRFRYNANRASSVQSKIKMLEKLPELKPVEKETVVTLKFP 481
Query: 268 DTELLSPPILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325
+ E L+PP+L +SEV F Y P P I V L AT +SRICIVG+NGAGK+TLLKII+G
Sbjct: 482 EVEPLNPPVLAISEVTFRYNPEDPLPIFKGVNLSATSDSRICIVGENGAGKSTLLKIIVG 541
Query: 326 IISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS 385
+S G +HR L+ GYF+QHHVD L+MN+ CV +L FPG+P EEYRRQLG FG+S
Sbjct: 542 QLSTIHGNIVLHRGLRIGYFAQHHVDHLNMNVTCVGVLAELFPGRPDEEYRRQLGSFGIS 601
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
G LALQ + SLSGGQKSRVA A+MCMA PNFLVLDEPTNHLDIETI+ALG+AIN +
Sbjct: 602 GPLALQSIASLSGGQKSRVALAKMCMAEPNFLVLDEPTNHLDIETIDALGRAINAF 657
|
|
| UNIPROTKB|F1P0V5 ABCF3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-109, Sum P(2) = 1.3e-109
Identities = 200/295 (67%), Positives = 244/295 (82%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
AI+WLENYLQ W +T+LVVSHDR+FL++V TDI HLHSQR+DTYRG++E F K K E+LK
Sbjct: 367 AILWLENYLQTWQSTILVVSHDRNFLNTVATDIIHLHSQRLDTYRGDFENFMKTKEERLK 426
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQQRE EAQ+ +REH+Q FID FRYNANRAS VQSK+K LE+LPELKP++KE EV++KFP
Sbjct: 427 NQQREYEAQQQYREHIQVFIDRFRYNANRASQVQSKLKLLEKLPELKPVDKESEVMMKFP 486
Query: 268 DT-ELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D E SPPILQL EV+F Y P I ++ + A LESRIC+VG+NGAGK+T+LKI+MG
Sbjct: 487 DGFEKFSPPILQLDEVDFCYDPSHYIFRSLSVSADLESRICVVGENGAGKSTMLKILMGE 546
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++P G R HRNLK GYFSQHHVDQLD+N+ V+LL FPGK +EEYR QLG +GVSG
Sbjct: 547 LAPVRGIRHAHRNLKIGYFSQHHVDQLDLNISAVELLARKFPGKTEEEYRHQLGSYGVSG 606
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+LA++ V SLSGGQKSRVAFA+M M+ PNF +LDEPTNHLD+ETIEAL KA+NK+
Sbjct: 607 ELAVRPVASLSGGQKSRVAFAQMTMSCPNFYILDEPTNHLDMETIEALAKALNKF 661
|
|
| POMBASE|SPBC29A3.09c SPBC29A3.09c "AAA family ATPase Gcn20 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 830 (297.2 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 158/294 (53%), Positives = 215/294 (73%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLK 207
+I +L YLQ + +LVVSHDR FL+ V TDI H HS+R+D Y+GN+ F + E+ K
Sbjct: 389 SIAFLSEYLQTYKNIVLVVSHDRSFLNEVATDIIHQHSERLDYYKGNFSQFYATREERCK 448
Query: 208 NQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267
NQ RE E Q +R+H+Q FID FRYNA ++S QS+IK+LE+LP L+ + E EV +FP
Sbjct: 449 NQLREYEKQMEYRKHLQSFIDKFRYNAAKSSEAQSRIKKLEKLPILEKPQTEEEVEFEFP 508
Query: 268 DTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327
E +SPPILQ+S+VNFEYVPG PIL +V + ++SRI +VG NGAGK+T+LK+++ +
Sbjct: 509 PVEKISPPILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQL 568
Query: 328 SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD 387
PT+G + H L+ YF+QHHVD LD+NL + L FPGK +EEYRR LG FGVSG
Sbjct: 569 HPTSGIVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTFPGKGEEEYRRHLGAFGVSGP 628
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
LALQ + +LSGGQKSRVAFA + + P+ L+LDEPTNHLD+E+++AL +A+ ++
Sbjct: 629 LALQKMITLSGGQKSRVAFACLGLQNPHILILDEPTNHLDMESMDALTRAVKRF 682
|
|
| UNIPROTKB|G4NB88 MGG_11547 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 814 (291.6 bits), Expect = 8.9e-94, Sum P(2) = 8.9e-94
Identities = 157/295 (53%), Positives = 210/295 (71%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRG-NYEAFDKIKTEKL 206
+I +L YLQ++P+T+LVVSHDR FL+ V TDI H HSQR+D YRG N++ F + E+
Sbjct: 400 SITFLSTYLQSYPSTVLVVSHDRAFLNEVATDIIHQHSQRLDYYRGANFDTFYATREERK 459
Query: 207 KNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKF 266
K +RE E Q R H+Q FID FRYNA ++S QS+IK+LER+P L+P E E V +F
Sbjct: 460 KTAKREYENQMAQRAHLQAFIDKFRYNAAKSSEAQSRIKKLERMPVLEPPEAEYSVHFRF 519
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
PD E LSPPI+Q+SEV F Y P +L NV L L+SRI IVG NGAGKTT+LK+++
Sbjct: 520 PDVEKLSPPIVQMSEVTFGYTPDNILLRNVDLDVQLDSRIGIVGPNGAGKTTVLKLLISK 579
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++PT+G + H L+ G+F+QHHVD LD+ + V + +PG+ EEYRRQLG FG++G
Sbjct: 580 LTPTSGIISQHPRLRIGFFAQHHVDALDLTVSAVSFMAKTYPGRTDEEYRRQLGAFGITG 639
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
LQ + LSGGQKSRVAFA + + P+ LVLDEP+NHLDIE ++AL A+N++
Sbjct: 640 TTGLQKMEVLSGGQKSRVAFACLALTNPHILVLDEPSNHLDIEAMDALADALNQF 694
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5R9Z5 | ABCF3_PONAB | No assigned EC number | 0.5921 | 0.9187 | 0.5740 | yes | N/A |
| Q66H39 | ABCF3_RAT | No assigned EC number | 0.6013 | 0.9187 | 0.5740 | yes | N/A |
| Q8K268 | ABCF3_MOUSE | No assigned EC number | 0.6013 | 0.9187 | 0.5740 | yes | N/A |
| Q9NUQ8 | ABCF3_HUMAN | No assigned EC number | 0.5990 | 0.9187 | 0.5740 | yes | N/A |
| P44808 | Y658_HAEIN | No assigned EC number | 0.3179 | 0.9345 | 0.6489 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 443 | |||
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-134 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-123 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-80 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-44 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-39 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-35 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-34 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-26 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-26 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-24 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-23 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-23 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-22 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-22 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 8e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-21 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-20 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-20 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-20 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-19 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 4e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 9e-19 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-18 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-18 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-18 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-18 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 5e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 5e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-16 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-16 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 8e-16 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-15 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 4e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-15 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-15 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-14 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-14 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-14 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-14 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-14 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 6e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 8e-14 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 9e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-14 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 1e-13 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-13 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-13 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-13 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-13 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 8e-13 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-12 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-12 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-12 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 4e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-12 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 7e-12 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 9e-12 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-11 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 3e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-11 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-11 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 9e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 9e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 9e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 9e-11 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-10 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-10 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-10 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-10 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-10 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-10 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 5e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-10 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-10 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-09 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 3e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-09 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 5e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-09 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 8e-09 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 9e-09 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-08 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-08 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-08 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-08 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-08 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-08 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 5e-08 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 5e-08 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 7e-08 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 9e-08 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-07 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-07 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 4e-07 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 4e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-07 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 6e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 9e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-06 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-06 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 5e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 5e-06 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 6e-06 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 7e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-06 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-05 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-05 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 4e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-04 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 1e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-04 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 3e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 3e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 4e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 5e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 0.001 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 0.001 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 0.001 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.001 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 0.002 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.002 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.002 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.002 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.003 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.003 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.003 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.004 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 401 bits (1033), Expect = e-134
Identities = 193/437 (44%), Positives = 265/437 (60%), Gaps = 45/437 (10%)
Query: 42 IPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQA--------------- 86
IP + +LHVEQEVVGDDT A+ VL D +R LL E +
Sbjct: 231 IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKG 290
Query: 87 INNGTADAN-MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR 145
N D + +S L +++ LE I+A A ARA+ ILAGL FTPEMQ +ATK FSGGWR
Sbjct: 291 ANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWR 350
Query: 146 KM--------------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTD 179
A++WLE YL WP T +VVSH R FL++V TD
Sbjct: 351 MRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410
Query: 180 IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239
I HLH Q++ TY+G+Y+ F++ + E+LKNQQ+ E+ R H+Q FID FRYNA RAS
Sbjct: 411 ILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASL 470
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTE-LLSPPILQLSEVNFEYVPGKPIL-TNVC 297
VQS+IK L+RL + + + + +FP + PPI+ S+ +F Y PG P+L N+
Sbjct: 471 VQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGY-PGGPLLFKNLN 529
Query: 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357
G L+SRI +VG NG GK+T+LK+I G + P++GT ++ FSQHHVD LD++
Sbjct: 530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSS 589
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
+ + FPG P+++ R LG FGV+G+LALQ + +LSGGQKSRVAFA++ P+ L
Sbjct: 590 NPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL 649
Query: 418 VLDEPTNHLDIETIEAL 434
+LDEP+NHLD++ +EAL
Sbjct: 650 LLDEPSNHLDLDAVEAL 666
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 368 bits (946), Expect = e-123
Identities = 150/451 (33%), Positives = 234/451 (51%), Gaps = 44/451 (9%)
Query: 26 TLHLHLEGGMV---SGQLRIPSHISVLHVEQEVVGDDT-PAIDSVLECDTKRQNLLNREK 81
TL L + G + SG++ P + V ++ QE D +D V+E + + LL +
Sbjct: 44 TL-LKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELE 102
Query: 82 TITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFS 141
D + EL + EL+ + ARA L GLGF E + S
Sbjct: 103 EAYAL--LADPDDELLAELEALLEELDGWTLE---ARAEEALLGLGFPDEDRP--VSSLS 155
Query: 142 GGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDS 175
GGWR+ +I WLE+YL+ +P T++VVSHDR+FLD+
Sbjct: 156 GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDN 215
Query: 176 VPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNAN 235
V T I L ++ Y+GNY ++ + K E+L+ + E Q+ Q++I + A+
Sbjct: 216 VATHILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAAS 275
Query: 236 RASSVQSKIKQLERL----PELKPIEKEVEVVLKFPDTELLSP-PILQLSEVNFEYVPGK 290
+A +S+IK+LE+L E +P+E+ + +FP +L+ V+ Y G+
Sbjct: 276 KAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
+L ++ RI IVG NGAGK+TLLK++ G + P +GT V +K GYF QH
Sbjct: 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHR- 394
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
D+LD + ++ L FP ++E R LG FG +G+ + VG LSGG+K+R+ A++
Sbjct: 395 DELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL 454
Query: 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ PN L+LDEPTNHLDIE++EAL +A+ +
Sbjct: 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF 485
|
Length = 530 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 6e-80
Identities = 143/429 (33%), Positives = 225/429 (52%), Gaps = 37/429 (8%)
Query: 37 SGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTK-RQNLLNREKTITQAINNGTADAN 95
G P + + V QE PA++ V++ D + RQ L + N+G A A
Sbjct: 55 GGSYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQ--LEAQLHDANERNDGHAIAT 112
Query: 96 MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRKM-------- 147
+ +L+AI+A +RA+ +L GLGF+ E +R FSGGWR
Sbjct: 113 -------IHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165
Query: 148 ------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRID 189
A+IWLE +L+++ TL+++SHDR FLD + I H+ Q +
Sbjct: 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225
Query: 190 TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLER 249
Y GNY +F+ + +L QQ E+Q+ H+Q +ID FR A +A QS+IK LER
Sbjct: 226 EYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLER 285
Query: 250 LPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIV 309
+ + P + F E L P+L++ +V+ Y + IL ++ L SRI ++
Sbjct: 286 MELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLL 344
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369
G NGAGK+TL+K++ G ++P +G + + +K GYF+QH ++ L + +Q L P
Sbjct: 345 GRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQ 404
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ +++ R LGGFG GD + SGG+K+R+ A + PN L+LDEPTNHLD++
Sbjct: 405 ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD 464
Query: 430 TIEALGKAI 438
+AL +A+
Sbjct: 465 MRQALTEAL 473
|
Length = 638 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 3e-44
Identities = 119/397 (29%), Positives = 185/397 (46%), Gaps = 84/397 (21%)
Query: 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHF------SGGWRKM----- 147
+L FAE++ A+ ARA +L G+G PE Q H+ + GW K+
Sbjct: 118 DLEVKFAEMDGYTAE---ARAGELLLGVGI-PEEQ-----HYGLMSEVAPGW-KLRVLLA 167
Query: 148 ----------------------AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHS 185
I WLE+ L +T++++SHDRHFL+SV T + L
Sbjct: 168 QALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDY 227
Query: 186 QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREH---------VQKFIDTFRYNANR 236
+ Y GNY+ + T Q RE R+ ++ +Q F+ F NA++
Sbjct: 228 GELRVYPGNYDEYMTAAT-----QARE----RLLADNAKKKAQIAELQSFVSRFSANASK 278
Query: 237 ASSVQSKIKQLER--LPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILT 294
A S+ KQ+++ L E+KP + ++F + L L++ + + P+
Sbjct: 279 AKQATSRAKQIDKIKLEEVKPSSR-QNPFIRFEQDKKLHRNALEVENLTKGF-DNGPLFK 336
Query: 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL- 353
N+ L R+ I+G+NG GKTTLL+ ++G + P +GT N GY++Q H
Sbjct: 337 NLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFE 396
Query: 354 -DMNLRCVQLLEAAF--------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
D+ L F G ++ R LG S D + V LSGG+K R+
Sbjct: 397 NDLTL---------FDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRM 447
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
F ++ M PN LV+DEPTNH+D+E+IE+L A+ KY
Sbjct: 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY 484
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-39
Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 49/165 (29%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++L ++ Y GK +L ++ L RI +VG NGAGK+TLLK+I G + P G T
Sbjct: 1 IELENLSKTY-GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSL 396
+K GYF Q L
Sbjct: 60 GSTVKIGYFEQ------------------------------------------------L 71
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
SGG+K R+A A++ + PN L+LDEPTNHLD+E+IEAL +A+ +Y
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY 116
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 7e-35
Identities = 65/202 (32%), Positives = 90/202 (44%), Gaps = 37/202 (18%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++ L ++ Y +P+L NV L RI +VG NGAGK+TLLKI+ G + P +G
Sbjct: 1 MSMITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 334 RTVHRNLKFGYFSQHH------------------VDQLDMNLRCVQLLEAAFPGKPQEEY 375
T + L+ GY SQ + +L L L A + E
Sbjct: 60 VTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAEL 119
Query: 376 RRQ----------------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
L G G + V SLSGG + RVA AR + P+ L+L
Sbjct: 120 EALLEELDGWTLEARAEEALLGLGFPDEDRP--VSSLSGGWRRRVALARALLEEPDLLLL 177
Query: 420 DEPTNHLDIETIEALGKAINKY 441
DEPTNHLD+E+IE L + +Y
Sbjct: 178 DEPTNHLDLESIEWLEDYLKRY 199
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-34
Identities = 94/305 (30%), Positives = 155/305 (50%), Gaps = 34/305 (11%)
Query: 151 WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQ 210
WLE +LQ +P T++ V+HDR+FLD+V I L R + GNY ++ + K ++L+ ++
Sbjct: 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEE 258
Query: 211 REIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK-QLERLPELKPIEKEVEVVLKFPDT 269
+E E+ R +++ ++ R + + Q+K K +L R EL E + +
Sbjct: 259 KE-ESARQKA--LKRELEWVRSSP---KARQAKSKARLARYEELLSQEFQK----RNETA 308
Query: 270 ELLSPPILQLSE--VNFEYVP----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
E+ PP +L + + E + K ++ ++ + ++G NGAGK+TL ++I
Sbjct: 309 EIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMI 368
Query: 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN----------LRCVQLLEAAFPGKPQE 373
G P +GT + +K Y Q D LD N L +QL GK +
Sbjct: 369 TGQEQPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGLDIIQL------GKREV 421
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
R +G F G + VG LSGG+++RV A+ + N L+LDEPTN LD+ET+ A
Sbjct: 422 PSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRA 481
Query: 434 LGKAI 438
L +A+
Sbjct: 482 LEEAL 486
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 2e-26
Identities = 105/402 (26%), Positives = 180/402 (44%), Gaps = 82/402 (20%)
Query: 93 DANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW-RKMA--- 148
+ N++ EL ++ +L+ + R + +LA LG P+ + SGGW RK A
Sbjct: 114 EKNLN-ELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSS---LSGGWLRKAALGR 169
Query: 149 ----------------------IIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
I WLE +L+ + +++ +SHDR F+ ++ T I L
Sbjct: 170 ALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRG 229
Query: 187 RIDTYRGNYEAF-----DKIKTEKLKNQ-------QRE------IEAQRMHREHVQKFID 228
++ +Y GNY+ + + ++ E+L+N Q E I+A+R E + +
Sbjct: 230 KLVSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALK 289
Query: 229 TFRYNANRASSVQSKIK-QLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV 287
R + V K Q+E + + ++ VN++ +
Sbjct: 290 ALRRERSERREVMGTAKMQVE-------------------EASRSGKIVFEMENVNYQ-I 329
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ 347
GK ++ + +I ++G NG GKTTLLK+++G + +G L+ YF Q
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQ 389
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQE-----EYRRQLG---GFGVSGDLALQFVGSLSGG 399
H + LD + V ++ GK QE R LG F A+ V +LSGG
Sbjct: 390 HRAE-LDPE-KTV--MDNLAEGK-QEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGG 444
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+++R+ AR+ + N L+LDEPTN LD+ET+E L + ++ Y
Sbjct: 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486
|
Length = 635 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-26
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 38/163 (23%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++F Y G+ L NV L + +VG NG+GK+TLL+ I G++ PT+G
Sbjct: 1 EIENLSFRY-GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE---- 55
Query: 338 RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
+ + P EE RR++G +V LS
Sbjct: 56 ----------------------ILIDGKDIAKLPLEELRRRIG-----------YVPQLS 82
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GGQ+ RVA AR + P+ L+LDEPT+ LD + E L + + +
Sbjct: 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 2e-24
Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 50/181 (27%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++ Y G+ +L ++ L + I+G NGAGK+TLLK + G++ P++G +
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 338 -RNL----------KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
++L K Y Q L + L
Sbjct: 60 GKDLASLSPKELARKIAYVPQ--------ALELLGLA----------------------- 88
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI-------ETIEALGKAIN 439
LA + LSGG++ RV AR P L+LDEPT+HLDI E + L +
Sbjct: 89 HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERG 148
Query: 440 K 440
K
Sbjct: 149 K 149
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 5e-23
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 38/173 (21%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+++ ++ Y K L ++ L T+E ++G NGAGKTTL+KII+G++ P +G
Sbjct: 1 IEVRNLSKRY-GKKTALDDISL--TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG----GFGVSGDL-A 389
V G D K EE +R++G + +L
Sbjct: 58 KV-----LGK---------D-------------IKKEPEEVKRRIGYLPEEPSLYENLTV 90
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ + LSGG K R+A A+ + P L+LDEPT+ LD E+ + + +
Sbjct: 91 RENL-KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 95.3 bits (238), Expect = 9e-23
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 30/185 (16%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV- 336
++ ++ Y G P+L +V + IVG NGAGK+TLLK I+G++ PT+G+ V
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 337 -----HRNLKFGYFSQHHVDQLDMNLRCVQLL------EAAFPGKPQEEYRRQLGGFGVS 385
+ GY Q D + ++ + + + ++
Sbjct: 60 GKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKV------ 113
Query: 386 GDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
D AL+ VG LSGGQ+ RV AR + P+ L+LDEP +D +T E +
Sbjct: 114 -DEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIY 172
Query: 436 KAINK 440
+ + +
Sbjct: 173 ELLRE 177
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-22
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 37/196 (18%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
+++L V+ Y G L +V L +E+ + IVG +G+GK+TLL ++ G+ PT
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNL--EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT 58
Query: 331 AGTRTV---------------HRNLKFGYFSQHH--VDQLDM--NLRCVQLLEAAFPGKP 371
+G + R K G+ Q+ + L + N+ L GK
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV----ELPLLIAGKS 114
Query: 372 QEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+R L G+ L + LSGGQ+ RVA AR + P ++ DEPT +LD
Sbjct: 115 AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 428 IET---IEALGKAINK 440
+T + L + +NK
Sbjct: 175 SKTAKEVLELLRELNK 190
|
Length = 226 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 3e-22
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332
++++ + +Y K L V +E ++G NGAGKTTLLKI+ G++ PT+G
Sbjct: 3 EVIEVRNLTKKYGGDKTALDGVSF--EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG 60
Query: 333 TRTV--------HRNLK--FGYFSQHHVDQLDMNLRCVQLLE--AAF---PGKPQEEYRR 377
V ++ GY Q L L + LE A + EE
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIE 118
Query: 378 Q-LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
+ L FG+ D A + V +LSGG K R++ A + P L+LDEPT+ LD E+ + +
Sbjct: 119 ELLELFGLE-DKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 437 AINKY 441
+ +
Sbjct: 178 LLREL 182
|
Length = 293 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-22
Identities = 50/189 (26%), Positives = 90/189 (47%), Gaps = 38/189 (20%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
P++++ + Y +P+L ++ L ++E ++G NGAGK+TLLK I+G++ P+
Sbjct: 1 MMPMIEVENLTVSY-GNRPVLEDISL--SVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 331 AGT--------RTVHRNLKFGYFSQH-HVDQ------LDMNLRCVQLLEAAFPGKPQEEY 375
+G R + L+ GY Q VD+ D+ + + + + + ++
Sbjct: 58 SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDV-VLLGRYGKKGWFRRLNKKD 116
Query: 376 RRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
+ ++ D AL+ VG LSGGQK RV AR P+ L+LDEP
Sbjct: 117 KEKV-------DEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169
Query: 426 LDIETIEAL 434
+D+ + +
Sbjct: 170 VDVAGQKEI 178
|
Length = 254 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 8e-22
Identities = 26/86 (30%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 181 FHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240
L + ++ TY+GNY + + K E+L+ Q++ E Q+ + +++FID FR A++A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 241 QSKIKQLERLPELKPIEKEVEVVLKF 266
QS+IK LE++ ++ ++ + ++F
Sbjct: 61 QSRIKALEKMERIEKPVEK-KPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 5e-21
Identities = 51/175 (29%), Positives = 79/175 (45%), Gaps = 25/175 (14%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+L++ ++F Y GKPIL ++ I+G NG+GK+TLLK + G++ P +G
Sbjct: 1 MMLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 335 TVH-RNL----------KFGYFSQHHVDQLDMNLRCVQLLE-------AAFPGKPQEEYR 376
+ +++ K Y Q L +L+ F +E+
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEE 117
Query: 377 ---RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G+ LA + V LSGG++ RV AR L+LDEPT+HLDI
Sbjct: 118 IVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDI 171
|
Length = 258 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 5e-21
Identities = 58/183 (31%), Positives = 84/183 (45%), Gaps = 24/183 (13%)
Query: 278 QLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+L ++F Y G +P L ++ L + IVG NG+GK+TLL+++ G++ PT+G V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 337 -----------HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQ--- 378
K G Q+ DQ E AF G P+EE +
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQF-FGPTV--EEEVAFGLENLGLPEEEIEERVEE 117
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
L G+ L + +LSGGQK RVA A + P+ L+LDEPT LD L +
Sbjct: 118 ALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176
Query: 438 INK 440
+ K
Sbjct: 177 LKK 179
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 61/216 (28%), Positives = 87/216 (40%), Gaps = 37/216 (17%)
Query: 247 LERLPELKPIEKEV-EVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESR 305
ER+ E+ V E L P L+L +++ Y P+L V L R
Sbjct: 304 AERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGER 363
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL--RCVQLL 363
+ I+G +G+GK+TLL + G++ P G T+ V LD + R V +
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTL---------DGVPVSSLDQDEVRRRVSVC 414
Query: 364 EA---------------AFPGKPQEEYRRQLGGFGVSGDLALQFVG----------SLSG 398
A P EE L G++ L G LSG
Sbjct: 415 AQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSG 474
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G++ R+A AR +A L+LDEPT HLD ET + L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 87.4 bits (218), Expect = 2e-20
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 47/178 (26%)
Query: 277 LQLSEVNFEYVPG-KPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++ V+F Y KP+L +V L T++ ++ IVG +G+GK+TLLK+++ + PT+G
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSL--TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGE 58
Query: 334 RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-- 391
+ LD E R+ + Q
Sbjct: 59 ---------ILIDGVDLRDLD-----------------LESLRKNIA-------YVPQDP 85
Query: 392 --FVGS-----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
F G+ LSGGQ+ R+A AR + P L+LDE T+ LD ET + +A+
Sbjct: 86 FLFSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 5e-20
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 17/141 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN----------L 357
I+G NGAGK+TL K+I G P +GT + +K Y Q D LD N L
Sbjct: 355 IIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSR-DALDPNKTVWEEISGGL 413
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
+++ G + R +G F G + VG LSGG+++R+ A+ N L
Sbjct: 414 DIIKV------GNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467
Query: 418 VLDEPTNHLDIETIEALGKAI 438
+LDEPTN LD+ET+ AL +A+
Sbjct: 468 LLDEPTNDLDVETLRALEEAL 488
|
Length = 556 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-19
Identities = 59/186 (31%), Positives = 85/186 (45%), Gaps = 54/186 (29%)
Query: 259 EVE-VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKT 317
EVE V ++P E PP+L+ V+F PG+ L I+G +G+GK+
Sbjct: 2 EVENVSFRYPGAE---PPVLR--NVSFSIEPGE------SLA--------IIGPSGSGKS 42
Query: 318 TLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
TL ++I+G++ PT+G + D D++ Q E
Sbjct: 43 TLARLILGLLRPTSGRVRL--------------DGADIS----QWDP--------NELGD 76
Query: 378 QLGGFGVSGDLALQFVGS-----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+G + D L F GS LSGGQ+ R+ AR P LVLDEP +HLD+E
Sbjct: 77 HVGY--LPQDDEL-FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGER 133
Query: 433 ALGKAI 438
AL +AI
Sbjct: 134 ALNQAI 139
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-19
Identities = 64/240 (26%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 234 ANRASSVQSKIKQ----LERLPELKPIEKEVEVVLKFPDTELLSPPILQ----LSEVNFE 285
R S + + +Q LERL ++ E E D L+ P LQ V+F
Sbjct: 426 ITRLSQLWTDFQQAKVALERLGDILDTPPEQE-----GDKTLIHLPKLQGEIEFENVSFR 480
Query: 286 YVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------- 333
Y P P+L ++ L ++ IVG +G+GK+TLLK+++G+ P G
Sbjct: 481 YGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540
Query: 334 --RTVHRNLKFGYFSQHHV-------DQLDM---NLRCVQLLEAAFPGKPQEEYRRQLGG 381
++ R + GY Q + + + +++EAA E G
Sbjct: 541 DLASLRRQV--GYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMG 598
Query: 382 FGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ D + G+ LSGGQ+ R+A AR ++ P L+LDE T+ LD ET + + + +
Sbjct: 599 Y----DTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654
|
Length = 709 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 85.2 bits (212), Expect = 4e-19
Identities = 53/179 (29%), Positives = 78/179 (43%), Gaps = 29/179 (16%)
Query: 277 LQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++L ++ Y G L V L + IVG +G+GK+TLL I+ G+ PT+G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 334 ---------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQ--LLEAAFPGKPQEEY 375
R G+ F + L +L ++ L G P++E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFN---LLPDLTALENVELPLLLAGVPKKER 117
Query: 376 RRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
R + L G+ GD + LSGGQ+ RVA AR P ++ DEPT +LD ET
Sbjct: 118 RERAEELLERVGL-GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSET 175
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 6e-19
Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 24/187 (12%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+++ ++F Y K L +V L R+ ++G NG+GK+TLLK++ G++ PT+G
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 335 TVHRNLKFGYFSQHHVDQLDMNL------RCVQLLEA------AFP----GKPQEEYRRQ 378
V S+ + +L + QL AF G P+EE +
Sbjct: 62 LVDG---LDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEER 118
Query: 379 ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G+ +L + +LSGGQK RVA A + P L+LDEPT LD + L
Sbjct: 119 VAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177
Query: 435 GKAINKY 441
+ + K
Sbjct: 178 LELLKKL 184
|
Length = 235 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 9e-19
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 25/173 (14%)
Query: 288 PGKPILTNVCLGATLESRI-CIVGDNGAGKTTLLKIIMGIISPTAGT------------R 334
KP + ++ L + I ++G NGAGKTT LK++ G + PT+GT +
Sbjct: 13 GTKPAVDDLSLNV-YKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK 71
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ----LGGFGVSGDL 388
++L GY Q D L L + L A G P+ E + + L G D
Sbjct: 72 AARQSL--GYCPQF--DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLG-LTDK 126
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
A + +LSGG K +++ A + P+ L+LDEPT+ LD + A+ I +
Sbjct: 127 ANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-18
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 49/200 (24%)
Query: 277 LQLSEVNFEYVPGKPI--LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
++ V+F Y P + I L NV L ++ I+G G+GK+TLLK++ G+ PT+G+
Sbjct: 3 IEFRNVSFSY-PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 334 ------------RTVHRNLKFGYFSQHHV-------DQLDMNLRCV---QLLEAA----- 366
+ RN+ GY Q D + + ++L AA
Sbjct: 62 LLDGTDIRQLDPADLRRNI--GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 367 --FPGKPQEEYRRQLG--GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
F K Q+G G G LSGGQ+ VA AR + P L+LDEP
Sbjct: 120 TDFVNKHPNGLDLQIGERGRG------------LSGGQRQAVALARALLNDPPILLLDEP 167
Query: 423 TNHLDIETIEALGKAINKYT 442
T+ +D+ + E L + + +
Sbjct: 168 TSAMDMNSEERLKERLRQLL 187
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-18
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 10/172 (5%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
++ ++F Y G IL ++ L I + G NGAGKTTL KI+ G+I ++G+ ++
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 338 --------RNLKFGYFSQHHVDQLDMN-LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL 388
R GY Q QL + +R LL E+ L + L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-AL 119
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ SLSGGQK R+A A ++ + L+ DEPT+ LD + +E +G+ I +
Sbjct: 120 KERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 2e-18
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 317 TTLLKIIMGIISPTAGTRTVH------------RNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+TLLK+I G++ PT+GT + + G Q ++ +R L
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVR-ENLFF 59
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
+ L G+ L + VG+LSGGQK RVA AR + P L+LDEPT
Sbjct: 60 GLRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 3e-18
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 21/171 (12%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT- 335
L+LS V++ G+ I+ V + A S ++G NG+GK+TLL+++ G + P AGT
Sbjct: 2 LRLSRVSWS-AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 336 ----VH------RNLKFGYFSQHHVDQLDMNLRCVQLL-----EAAFPGKPQEEY---RR 377
+H R + Q + + +R V L + + G + R
Sbjct: 61 AGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDR 120
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L +S LA + + +LSGG++ RV AR P L+LDEPTNHLD+
Sbjct: 121 ALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 5e-18
Identities = 54/197 (27%), Positives = 83/197 (42%), Gaps = 42/197 (21%)
Query: 286 YVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYF 345
P K IL ++ L ++I ++G NGAGK+TLL+I+ G+ G +K GY
Sbjct: 14 VPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYL 73
Query: 346 SQHHVDQLDMNLRCVQLLEAAFP----------------GKPQEEY----RRQ------- 378
Q QLD + +E +P + Q
Sbjct: 74 PQE--PQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEII 131
Query: 379 --LGGFGVSGDL-----AL------QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
+ + L AL V LSGG++ RVA R+ ++ P+ L+LDEPTNH
Sbjct: 132 DAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNH 191
Query: 426 LDIETIEALGKAINKYT 442
LD E++ L + + +Y
Sbjct: 192 LDAESVAWLEQHLQEYP 208
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-17
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 25/191 (13%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA- 331
+ P+++L V+ GK IL ++ IVG NGAGKTTLL ++ G P++
Sbjct: 28 NEPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG 86
Query: 332 ---------GTRTVHRNLK--FGYFS-QHHVDQLDMNLRCVQLLEAAF---PGKPQEEYR 376
G L+ G S + H ++ + F G QE+
Sbjct: 87 DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV-RETVRDVVLSGFFASIGIYQEDLT 145
Query: 377 RQ-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ L + LA + GSLS G++ RV AR + P L+LDEP LD+
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 430 TIEALGKAINK 440
E L + +
Sbjct: 206 AREQLLNRLEE 216
|
Length = 257 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 4e-17
Identities = 69/232 (29%), Positives = 103/232 (44%), Gaps = 65/232 (28%)
Query: 236 RASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQ----LSEVNFEYVPG-- 289
R ++ ++ L+ L +L P+E+ T L P LQ V+F Y PG
Sbjct: 427 RYQQAKTALQSLDELMQL-PVERP-------EGTRFLHRPRLQGEIEFRNVSFAY-PGQE 477
Query: 290 KPILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPTAGT--------RTVH-- 337
P L NV L T+ ++ I+G G+GK+TLLK+++G+ PT G+ R +
Sbjct: 478 TPALDNVSL--TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPA 535
Query: 338 ---RNLKFGYFSQHHV-------DQLDMNLRCV---QLLEAAFPGKPQEEYRRQLGGFG- 383
RN+ GY Q D + + ++L AA +L G
Sbjct: 536 DLRRNI--GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA-----------ELAGVTE 582
Query: 384 -VSGD---LALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
V L +Q +G SLSGGQ+ VA AR + P L+LDEPT+ +D
Sbjct: 583 FVRRHPDGLDMQ-IGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMD 633
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-17
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 34/149 (22%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTV-----HRNLK--------------FGYFSQ 347
+G NGAGKTT +KII+G+I P +G T +N++ + +
Sbjct: 30 GFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG--GFGVSGDLALQFVGSLSGGQKSRVA 405
NLR L A G ++ L G S + V S G K R+
Sbjct: 90 RE------NLR----LLARLLGIRKKRIDEVLDVVGLKDSAK---KKVKGFSLGMKQRLG 136
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEAL 434
A + P+ L+LDEPTN LD + I+ L
Sbjct: 137 IALALLGNPDLLILDEPTNGLDPDGIKEL 165
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 5e-17
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G+ + + + + + G NG+GKTTLL++I G++ P AGT + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGT--IKLDGGDIDDPDV 71
Query: 349 --------HVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398
H + + L + LE AAF G + + L G++ L F G LS
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPF-GYLSA 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
GQK RVA AR+ ++ +LDEPT LD + + I
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170
|
Length = 207 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 8e-17
Identities = 61/219 (27%), Positives = 97/219 (44%), Gaps = 31/219 (14%)
Query: 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATL 302
K+ L P P E V P E+ L ++F Y GKP L+++ L
Sbjct: 293 KLFTLLESPVATPGSGEKAEVANEPPIEI------SLENLSFRYPDGKPALSDLNLTIKA 346
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLK-------FGYFSQHHV- 350
+VG +GAGK+TLL +++G ++PT G V+ R+L + SQ+
Sbjct: 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL 406
Query: 351 --DQLDMNLRCV-------QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
+ N+ +++ A E + G V G+ LSGGQ
Sbjct: 407 FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGA----GLSGGQA 462
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
R+A AR ++ + L+LDEPT HLD ET + + +A+ +
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQE 501
|
Length = 559 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 9e-17
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 31/184 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
++++ ++ Y G L +V L + I+G +GAGK+TLL+ + G++ PT+G
Sbjct: 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-- 59
Query: 335 TVHRN----------------LKFGYFSQHH--VDQLDM--NLRCVQL-----LEAAFPG 369
+ N G Q V +L + N+ +L + F
Sbjct: 60 EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 370 KPQEEYRRQLGGF---GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+E+ + L G+ D A Q +LSGGQ+ RVA AR + P ++ DEP L
Sbjct: 120 FSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASL 178
Query: 427 DIET 430
D E+
Sbjct: 179 DPES 182
|
Length = 258 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 2e-16
Identities = 48/157 (30%), Positives = 64/157 (40%), Gaps = 22/157 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNL--------------KFGYFSQ 347
E I G +GAGK+TLL+ I G+ P GT + L K G Q
Sbjct: 23 EEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSR 403
+ L +L + L K E R L G+ L ++ LSGG+K R
Sbjct: 83 QY--ALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDH-LLNRYPAQLSGGEKQR 139
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VA AR A P L+LDEP + LD L + +
Sbjct: 140 VALARALAAQPELLLLDEPFSALDRALRLQLLPELKQ 176
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 2e-16
Identities = 51/183 (27%), Positives = 76/183 (41%), Gaps = 54/183 (29%)
Query: 275 PILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+L++ ++ Y GK L V L + ++G NGAGKTTLLK IMG++ P +G
Sbjct: 2 PMLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59
Query: 334 ---------------------------R------TVHRNLKFGYFSQHHVDQLDMNLRCV 360
R TV NL G ++ + R +
Sbjct: 60 IIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYA---RRDKEAQERDL 116
Query: 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+ + FP +E R Q G+LSGG++ +A AR M+ P L+LD
Sbjct: 117 EEVYELFP--RLKERRNQRA-------------GTLSGGEQQMLAIARALMSRPKLLLLD 161
Query: 421 EPT 423
EP+
Sbjct: 162 EPS 164
|
Length = 237 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-16
Identities = 51/206 (24%), Positives = 76/206 (36%), Gaps = 58/206 (28%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLES-RI-CIVGDNGAGKTTLLKIIMGIISPT 330
+PP+L+L ++ + G L V L T+ + ++G+NGAGK+TL+KI+ G+ P
Sbjct: 5 TPPLLELRGISKSF-GGVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPD 61
Query: 331 AGT---------------------RTVH------------RNLKFGYFSQHH---VDQLD 354
+G TVH N+ G +D+
Sbjct: 62 SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKA 121
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
M R L G+ D VG LS Q+ V AR
Sbjct: 122 MR----------------RRARELLARLGLDIDPD-TLVGDLSIAQRQMVEIARALSFDA 164
Query: 415 NFLVLDEPTNHLDIETIEALGKAINK 440
L+LDEPT L ++ E L I +
Sbjct: 165 RVLILDEPTAALTVKETERLFDLIRR 190
|
Length = 500 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 7e-16
Identities = 55/173 (31%), Positives = 76/173 (43%), Gaps = 51/173 (29%)
Query: 305 RICIVGDNGAGKTTLLKIIMG---------------IIS------PTAGTRTVHRNLKFG 343
R+C+VG NGAGK+TL+KI+ G I++ P TV +
Sbjct: 31 RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTV-----YD 85
Query: 344 YFSQ------------HHV------DQLDMNLRCVQLLEAAFP--GKPQEEYRRQ--LGG 381
+ ++ H + D + NL + L+ Q E R L
Sbjct: 86 FVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G+ D AL SLSGG + A R ++ P+ L+LDEPTNHLDIETIE L
Sbjct: 146 LGLDPDAALS---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195
|
Length = 635 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 8e-16
Identities = 55/172 (31%), Positives = 83/172 (48%), Gaps = 27/172 (15%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTAGT-- 333
LQL + Y K L V L TL + ++G NGAGKTTL++I+ + P++GT
Sbjct: 1 LQLENLTKRY-GKKRALDGVSL--TLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 334 ----------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ--- 378
+ + R + GY Q + N + L+ A G P +E + +
Sbjct: 58 IDGQDVLKQPQKLRRRI--GYLPQEF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDE 113
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
L + GD A + +GSLSGG + RV A+ + P+ L++DEPT LD E
Sbjct: 114 VLELVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-15
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 36/134 (26%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
++G+NGAGK+TL+KI+ G+ P +G V G E +
Sbjct: 30 ALLGENGAGKSTLMKILSGLYKPDSGEILVD-----GK-------------------EVS 65
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
F P++ R+ G + V LS G++ V AR L+LDEPT L
Sbjct: 66 FAS-PRD--ARRAG---------IAMVYQLSVGERQMVEIARALARNARLLILDEPTAAL 113
Query: 427 DIETIEALGKAINK 440
+E L K I +
Sbjct: 114 TPAEVERLFKVIRR 127
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 2e-15
Identities = 52/167 (31%), Positives = 75/167 (44%), Gaps = 27/167 (16%)
Query: 277 LQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
L++ +N Y GK IL V L + ++G NGAGKTTLLK IMG++ P +G+
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 334 --------RTVHRNLKFG--Y-------FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR 376
H + G Y F + V++ NL A K +
Sbjct: 59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEE---NLLLG--AYARRRAKRKARLE 113
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
R F + Q G+LSGG++ +A AR M+ P L+LDEP+
Sbjct: 114 RVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 3e-15
Identities = 53/175 (30%), Positives = 76/175 (43%), Gaps = 23/175 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+++ V+ Y G+ L +V + + G +GAGK+TLLK+I G PT G
Sbjct: 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 336 V-HRNLKFGYFSQHHVDQLDMNLRCV----QLLE-------AAFP----GKPQEEYRRQ- 378
V +L + L + V +LL A P GKP E RR+
Sbjct: 61 VNGHDL--SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRV 118
Query: 379 ---LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ A LSGG++ RVA AR + P L+ DEPT +LD +
Sbjct: 119 SEVLDLVGL-KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 52/209 (24%)
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
PD + ++ V+F Y KP+L ++ ++ IVG +G+GK+TL+K+++ +
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 327 ISPTAGT-------------------------------RTVHRNLKFG--YFSQHHVDQL 353
PT+G T+ N+ G + +++
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATD---EEI 435
Query: 354 DMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ L+ E A P Y +G GV+ LSGGQ+ R+A AR +
Sbjct: 436 EEALKLANAHEFIANLPDG----YDTIVGERGVN----------LSGGQRQRLAIARALL 481
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L+LDE T+ LD ET + A+ K
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK 510
|
Length = 567 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 5e-15
Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 46/196 (23%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ V F Y PG+P+L +V ++ IVG +G+GK+T+L+++ ++G+ +
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 337 H----RNL-------KFGYFSQHHV---DQLDMNLRC-------VQLLEAA--------- 366
R + G Q V D + N+R +++EAA
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 367 --FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
FP + Y +G G+ LSGG+K RVA AR + P L+LDE T+
Sbjct: 121 MRFP----DGYDTIVGERGLK----------LSGGEKQRVAIARAILKNPPILLLDEATS 166
Query: 425 HLDIETIEALGKAINK 440
LD T + A+
Sbjct: 167 ALDTHTEREIQAALRD 182
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 8e-15
Identities = 50/192 (26%), Positives = 79/192 (41%), Gaps = 40/192 (20%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG----- 332
+ VNF Y KP+L ++ + IVG GAGKTTL+ ++M P G
Sbjct: 4 EFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILID 63
Query: 333 -------TRTVHRNLKFGY-------FSQHHVDQLDMN---------LRCVQLLEAA-FP 368
+R R+ G FS ++ + + + + A F
Sbjct: 64 GIDIRDISRKSLRS-MIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
K Y LG G G+LS G++ +A AR + P L+LDE T+++D
Sbjct: 123 MKLPNGYDTVLGENG----------GNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 429 ETIEALGKAINK 440
ET + + +A+ K
Sbjct: 173 ETEKLIQEALEK 184
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-15
Identities = 57/194 (29%), Positives = 82/194 (42%), Gaps = 30/194 (15%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
P L+ S V+ Y +P L V R+ +VG +GAGK+TLL +++G + PT
Sbjct: 317 APAPSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTE 376
Query: 332 GTRTV------HRNLKF-----GYFSQHHV---DQLDMNLRCVQLLEAAFPGKPQEEYRR 377
G+ V + + QH + N+R A P E R
Sbjct: 377 GSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRL------ARPDASDAEIRE 430
Query: 378 QLGGFGVSGDLA-----LQF-VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ +A L +G LSGGQ R+A AR + L+LDEPT HLD
Sbjct: 431 ALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLD 490
Query: 428 IETIEALGKAINKY 441
ET + +A+
Sbjct: 491 AETEAEVLEALRAL 504
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 49/169 (28%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG----------TRTVHR 338
L ++ L + ++G +G GKTTLL++I G+ P +G R
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER 71
Query: 339 NLKFGYFSQH-----HVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQ----LGGFGVS 385
G Q H+ + N+ AF G P+ E R + L G+
Sbjct: 72 R-NIGMVFQDYALFPHLTVAE-NI--------AFGLKLRGVPKAEIRARVRELLELVGLE 121
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G L ++ LSGGQ+ RVA AR P+ L+LDEP + LD + E L
Sbjct: 122 GLLN-RYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 2e-14
Identities = 52/177 (29%), Positives = 76/177 (42%), Gaps = 24/177 (13%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+L++ V+ + G +L ++ L + I+G +G GK+TLL++I G+ PT+G
Sbjct: 1 MALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 334 RTVH------RNLKFGYFSQHH-------VDQLDMNLRCVQL-LEAAFPGKPQEEYR--R 377
+ GY Q V L V L LE K + R
Sbjct: 60 VLLDGRPVTGPGPDIGYVFQEDALLPWLTV------LDNVALGLELRGKSKAEARERAKE 113
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++G ++ LSGG + RVA AR P L+LDEP LD T E L
Sbjct: 114 LLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169
|
Length = 248 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 51/185 (27%), Positives = 81/185 (43%), Gaps = 30/185 (16%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--- 333
L++S +N Y IL V L C++G NG GKTTLLK +MG++ +G+
Sbjct: 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 334 -----------RTVHRNLKFGY-------FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEY 375
+ Y F + V++ NL AA P + ++
Sbjct: 60 DGEDITKLPPHERARAGI--AYVPQGREIFPRLTVEE---NL---LTGLAALPRRSRKIP 111
Query: 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
F V ++ + G LSGGQ+ ++A AR + P L+LDEPT + I+ +G
Sbjct: 112 DEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIG 171
Query: 436 KAINK 440
+ I +
Sbjct: 172 RVIRR 176
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-14
Identities = 50/145 (34%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV------HRNLKFGYFSQHHVDQLDMNLRC 359
+ ++G NGAGKTTLL+ I+G+I P GT V GY Q H D +
Sbjct: 9 LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISV 68
Query: 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGD---------LALQFVGSLSGGQKSRVAFARMC 410
+ + G R + F D LA + VG LSGGQ+ RV AR
Sbjct: 69 AHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARAL 128
Query: 411 MAAPNFLVLDEPTNHLDIETIEALG 435
P+ L+LDEP LD+ T E L
Sbjct: 129 ATRPSVLLLDEPFTGLDMPTQELLT 153
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-14
Identities = 55/189 (29%), Positives = 79/189 (41%), Gaps = 38/189 (20%)
Query: 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---- 336
V Y G L + + + + +VG +GAGK+TLLK+I PT+GT V
Sbjct: 5 NVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQD 64
Query: 337 ----HRNLKFGYFSQHHVDQLDMNLRCVQLL-------EAAFP----GKPQEEYRR---- 377
Y + + + + +LL AF G P E R+
Sbjct: 65 VSDLRGR-AIPYLRRK----IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPA 119
Query: 378 ---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---I 431
+G L + LSGG++ RVA AR + +P L+ DEPT +LD +T I
Sbjct: 120 ALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175
Query: 432 EALGKAINK 440
L K INK
Sbjct: 176 MNLLKKINK 184
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-14
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 42/177 (23%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
L+L V+ Y K +L +V L + ++G +G+GK+TLL+ I G+ P +G+
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGS--- 56
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG----------GFGVSG 386
+ L+ L RR++G V
Sbjct: 57 ------ILIDGEDLTDLEDELP---------------PLRRRIGMVFQDFALFPHLTVLE 95
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
++AL LSGGQ+ RVA AR P+ L+LDEPT+ LD T + AL K++
Sbjct: 96 NIAL----GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA 148
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-14
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 28/190 (14%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--- 332
+++ V+ Y G L +V L + + G +GAGKTTLLK++ G ++P+ G
Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 333 ------TRTVHRNL-----KFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRR 377
R R L + G Q D + A P GK + E +R
Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTV----YENVALPLEVRGKKEREIQR 116
Query: 378 QLGGFGVSGDL---ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---I 431
++G L A F LSGG++ RVA AR + +P L+ DEPT +LD + I
Sbjct: 117 RVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERI 176
Query: 432 EALGKAINKY 441
L K +NK
Sbjct: 177 LDLLKRLNKR 186
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 4e-14
Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 20/159 (12%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------- 333
IL V L + IVG +G+GK+TLL ++ G+ P++G
Sbjct: 24 SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARA 83
Query: 334 RTVHRNLKFGYFSQHHVDQLDM--NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
R++ F + S H + L N+ L + + L G+ L
Sbjct: 84 ALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT-H 142
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+ LSGG++ RVA AR P+ L DEPT +LD T
Sbjct: 143 YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRAT 181
|
Length = 228 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 4e-14
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 28/183 (15%)
Query: 286 YVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------- 336
Y GK L +V L + ++G +GAGK+TLL+ + G++ PT+G+ +
Sbjct: 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK 69
Query: 337 HRNL-----KFGYFSQHH--VDQLDM--NLRC-----VQLLEAAFPGKPQEEYRRQLGGF 382
+ L + G Q +++L + N+ + F P+EE +R L
Sbjct: 70 GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAAL 129
Query: 383 GVSG--DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG---KA 437
G D A Q LSGGQ+ RVA AR M P ++ DEP LD + + K
Sbjct: 130 ERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR 189
Query: 438 INK 440
IN+
Sbjct: 190 INR 192
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 5e-14
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
+VG++G GK+TL ++I+G+ PT+G F + +L R
Sbjct: 44 LVGESGCGKSTLGRLILGLEEPTSGEI---------LFEGKDITKLSKEER--------- 85
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+E L G+ + ++ LSGGQ+ R+ AR P +V DEP + LD
Sbjct: 86 ----RERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALD 141
Query: 428 I 428
+
Sbjct: 142 V 142
|
Length = 268 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 6e-14
Identities = 57/188 (30%), Positives = 77/188 (40%), Gaps = 54/188 (28%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIV--GDNGAGKTTLLKIIMGIISPTAGT 333
+LQ+S + +Y GKP L ++ L TLES +V G +G GKTTLL +I G + G+
Sbjct: 1 MLQISHLYADY-GGKPALEDINL--TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
R V N+ FG L+ A
Sbjct: 58 ITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDNVAFG-------------------LQLA 98
Query: 367 FPGKPQEEY--RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
K Q + L G+ G +++ LSGGQ+ RV AR A P L+LDEP
Sbjct: 99 GVEKMQRLEIAHQMLKKVGLEGAEK-RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157
Query: 425 HLDIETIE 432
LD T E
Sbjct: 158 ALDAFTRE 165
|
Length = 255 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 7e-14
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
RL E+ ++ E K + L+ I +++V++ Y G IL+++ L + S+
Sbjct: 446 NRLNEVYLVDSEFINKKKRTELNNLNGDI-VINDVSYSYGYGSNILSDISLTIKMNSKTT 504
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNLKFGYFSQHHVDQLDMNLRCVQ----- 361
IVG +G+GK+TL K+++G +G + +LK +H + Q +N +
Sbjct: 505 IVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK--DIDRHTLRQF-INYLPQEPYIFS 561
Query: 362 ------LLEAAFPGKPQEEYRRQLG-----------GFGVSGDLALQFVGSLSGGQKSRV 404
LL A Q+E G +L+ + S+SGGQK R+
Sbjct: 562 GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEE-GSSISGGQKQRI 620
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIET 430
A AR + L+LDE T++LD T
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTIT 646
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 7e-14
Identities = 49/141 (34%), Positives = 68/141 (48%), Gaps = 29/141 (20%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH------------RNLKFGYFSQH-----HVDQ 352
G +GAGK+TLL+II G+ +P AG ++ R+ K G+ QH H+
Sbjct: 35 GPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTV 94
Query: 353 LD-----MNLRCVQLLEAAFPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
D + +R + EA + +E R QL G LA ++ LSGGQ+ RVA
Sbjct: 95 ADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEG------LADRYPAQLSGGQRQRVAL 148
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP LD
Sbjct: 149 ARALAVEPKVLLLDEPFGALD 169
|
Length = 345 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 8e-14
Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
P++++ V + + IL V L + I+G +G+GK+TLL++I+G++ P G
Sbjct: 7 PLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 335 TVH-RNL-------------KFGYFSQHHVDQLDMNLRCVQLLE-AAFP-----GKPQEE 374
+ ++ + G Q + + E AFP P+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVF-----ENVAFPLREHTKLPESL 120
Query: 375 YRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
R L G+ G A + LSGG + RVA AR P L LDEPT+ LD
Sbjct: 121 IRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
|
Length = 263 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 9e-14
Identities = 46/159 (28%), Positives = 61/159 (38%), Gaps = 49/159 (30%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------------------RTVHR 338
+ +VG +G GK+TLL+II G+ PT+G TV
Sbjct: 33 VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLD 92
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ--EEYRRQLGGFGVSGDLALQFVGSL 396
N+ G LE K + E L G+SG + L
Sbjct: 93 NVALG-------------------LELQGVPKAEARERAEELLELVGLSG-FENAYPHQL 132
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
SGG + RVA AR P+ L+LDEP + LD T E L
Sbjct: 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 9e-14
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 24/142 (16%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------------RNLKFGYFSQHHVDQ 352
+VG++G+GK+TL +I+ G++ P++G+ R ++ + Q
Sbjct: 322 LVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVF--QDPYSS 379
Query: 353 LDMNLRCVQLLE---AAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVA 405
L+ + +L G E R ++ G+ + ++ LSGGQ+ RVA
Sbjct: 380 LNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVA 439
Query: 406 FARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP + LD
Sbjct: 440 IARALALEPKLLILDEPVSALD 461
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 1e-13
Identities = 64/204 (31%), Positives = 87/204 (42%), Gaps = 54/204 (26%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTA 331
+++L V+ + +LE I+G +GAGK+TLL++I + PT+
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 332 GTRTVH------------RNL--KFGYFSQHHVDQLDMNL---RCVQLLEA-AFP----G 369
G+ V R L K G QH NL R V E AFP G
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQH------FNLLSSRTVF--ENVAFPLELAG 112
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVL 419
P+ E +++ V+ L+ VG LSGGQK RVA AR P L+
Sbjct: 113 VPKAEIKQR-----VAE--LLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLC 165
Query: 420 DEPTNHLDIET---IEALGKAINK 440
DE T+ LD ET I L K IN+
Sbjct: 166 DEATSALDPETTQSILELLKDINR 189
|
Length = 339 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 20/164 (12%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338
LS+V+ E PGK ILT ++G NGAGK+TL+++++G+++P G +
Sbjct: 20 LSDVSLELKPGK-ILT-------------LLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG 65
Query: 339 NLKFGYFSQH-HVD-QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSL 396
L+ GY Q ++D L + + L PG +E+ L +G L + L
Sbjct: 66 KLRIGYVPQKLYLDTTLPLTVNRFLRLR---PGTKKEDILPALKRVQ-AGHLIDAPMQKL 121
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
SGG+ RV AR + P LVLDEPT +D+ AL I++
Sbjct: 122 SGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQ 165
|
Length = 251 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 2e-13
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 148 AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
+I LE L+ +P T+++VSHDR+FLD V T I L +
Sbjct: 105 SIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 2e-13
Identities = 41/182 (22%), Positives = 77/182 (42%), Gaps = 29/182 (15%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIISPT 330
+L++ ++ + G L +V +++ + +VG++G+GK+TL + I+G++ PT
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSF--SIKKGETLGLVGESGSGKSTLARAILGLLKPT 58
Query: 331 AGTRTVH--------------RNLKFGYFSQHHVDQLDMNLRC----VQLLEAAFPGKPQ 372
+G+ R + Q + L+ + + L +
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 373 EEYRRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
E + + V L + + LSGGQ+ RVA AR P L+ DEPT+ LD+
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 429 ET 430
Sbjct: 179 SV 180
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-13
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 104 FAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----MAIIW-------- 151
+ D+ RA L GFT E Q++ SGG + ++
Sbjct: 406 ELSEGFPDGDEQEVRA--YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLL 463
Query: 152 --------------LENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197
LE L ++ T+L+VSHDR+FLD V T I+ + +++ + G YE
Sbjct: 464 DEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYED 522
Query: 198 FDKIKTE 204
+ + K E
Sbjct: 523 YLEQKKE 529
|
Length = 530 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 3e-13
Identities = 49/168 (29%), Positives = 68/168 (40%), Gaps = 40/168 (23%)
Query: 289 GKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------- 333
G+ +L V L G L I+G +G+GK+TLL++I+G++ P +G
Sbjct: 12 GRTVLKGVDLDVRRGEIL----AIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL 67
Query: 334 ----RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE-AAFP-----GKPQEEYRRQ----L 379
R + G Q + + E AFP +EE R L
Sbjct: 68 SEAELYRLRR-RMGMLFQSGALFDSLTVF-----ENVAFPLREHTRLSEEEIREIVLEKL 121
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
G+ G + LSGG K RVA AR P L+ DEPT LD
Sbjct: 122 EAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLD 168
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 57/201 (28%), Positives = 84/201 (41%), Gaps = 44/201 (21%)
Query: 274 PPILQLSEVNFE-------YVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
P + L E VP KP L + + I+G +G+GK+TL ++I
Sbjct: 305 DPAMPLPEPEGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI 364
Query: 324 MGIISPTAGT--------RTVHRNLKFG----YFSQ----------HHVDQLDMNLRCVQ 361
+GI PT+G+ + R FG Y Q ++ + N +
Sbjct: 365 VGIWPPTSGSVRLDGADLKQWDRE-TFGKHIGYLPQDVELFPGTVAENIARFGENADPEK 423
Query: 362 LLEAAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
++EAA E R G+ G G +LSGGQ+ R+A AR P +
Sbjct: 424 IIEAAKLAGVHELILRLPDGYDTVIGPGG-------ATLSGGQRQRIALARALYGDPKLV 476
Query: 418 VLDEPTNHLDIETIEALGKAI 438
VLDEP ++LD E +AL AI
Sbjct: 477 VLDEPNSNLDEEGEQALANAI 497
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-13
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------RTVHRNLKFGYFSQHHVDQLDMNLRC 359
++G NGAGKTT +++I+GII P +G RN + GY + M +
Sbjct: 31 LLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN-RIGYLPEERGLYPKMKVID 89
Query: 360 VQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415
+ A G +EE RR+ L +S + A + V LS G + +V F + P
Sbjct: 90 QLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPE 148
Query: 416 FLVLDEPTNHLDIETIEALGKAINKY 441
L+LDEP + LD +E L I +
Sbjct: 149 LLILDEPFSGLDPVNVELLKDVIREL 174
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 48/167 (28%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH- 337
L+ V+ E G+ LG IVG++G+GK+TL +++ G+ P++G+ +
Sbjct: 23 LNNVSLEIERGE------TLG--------IVGESGSGKSTLARLLAGLEKPSSGSILLDG 68
Query: 338 ---RNLKFGYFSQHHVDQL-------DMN-LRCVQ--LLEAAFP---GKPQEEYRRQLGG 381
K V Q+ +N R V L E P K Q+ L
Sbjct: 69 KPLAPKKRAKAFYRPV-QMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQ 127
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G+ + LSGGQ+ R+A AR + P L+LDEPT+ LD+
Sbjct: 128 VGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-13
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 29/182 (15%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L++ ++ Y GK L N+ L + I+G +GAGK+TLL+ I ++ P++G+
Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 336 V-HRNL-------------KFGYFSQHH--VDQLDMNLRCV-----------QLLEAAFP 368
+ ++ + G QH+ +++L + L V + L F
Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV-LENVLHGRLGYKPTWRSLLGRFS 119
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ +E L G++ D A Q LSGGQ+ RVA AR P+ ++ DEP LD
Sbjct: 120 EEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDP 178
Query: 429 ET 430
+T
Sbjct: 179 KT 180
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 48/185 (25%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
P L++ V+ + + ++ L + ++G +G GKTTLL++I G P++G
Sbjct: 2 PKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 333 T------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362
TV N+ FG + + + ++ R +
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
LE L GF A + LSGGQ+ RVA AR + P L+LDEP
Sbjct: 121 LE-----------LVGLEGF------ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEP 163
Query: 423 TNHLD 427
+ LD
Sbjct: 164 LSALD 168
|
Length = 352 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 6e-13
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 27/134 (20%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAG----------TRTVHR--NLKFGYFSQHH-------V 350
G NGAGKTT +I+G++ P +G +H+ L GY Q V
Sbjct: 33 GPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV 92
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
++ N+ V LE K + E + + L F ++ L SLSGG++ RV AR
Sbjct: 93 EE---NILAV--LEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIAR 146
Query: 409 MCMAAPNFLVLDEP 422
P FL+LDEP
Sbjct: 147 ALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 8e-13
Identities = 48/179 (26%), Positives = 67/179 (37%), Gaps = 41/179 (22%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------------------- 333
L +V ++G NGAGKTTL +I G + PT+G+
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARL 75
Query: 334 ---R-----------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379
R TV N+ ++ L R + A +E L
Sbjct: 76 GIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLL--ARARREEREA-----RERAEELL 128
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G+ DLA + G LS GQ+ R+ AR P L+LDEP L+ E E L + I
Sbjct: 129 ERVGL-ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 52/184 (28%), Positives = 74/184 (40%), Gaps = 44/184 (23%)
Query: 288 PGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---------- 336
PG P +L + A + ++G NGAGK+TLL + G++ P +G +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 337 ----HRNLKFGYFSQHHVDQL------------DMNLRCVQLLEAAFPGKPQEEYRRQ-- 378
R + G Q DQL +NL G + E R+
Sbjct: 62 GLLERRQ-RVGLVFQDPDDQLFAADVDQDVAFGPLNL-----------GLSEAEVERRVR 109
Query: 379 --LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
L G SG L + LSGG+K RVA A P+ L+LDEPT LD E +
Sbjct: 110 EALTAVGASG-LRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 437 AINK 440
+ +
Sbjct: 169 ILRR 172
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 1e-12
Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 29/177 (16%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
P++ +S+++ E+ +L V L S + +VG NGAGKTTLL+ I G ++PTAGT
Sbjct: 2 PMIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 335 TVH----RNLKFGYFSQH--HVDQ---LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS 385
V L S+ V Q L Q++E + +R + + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMG-----RTPHRSRFDTWTET 115
Query: 386 GDLAL----------QF----VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
A+ QF V SLSGG++ RV AR A L+LDEPT LDI
Sbjct: 116 DRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDI 172
|
Length = 402 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-12
Identities = 52/171 (30%), Positives = 70/171 (40%), Gaps = 56/171 (32%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------RNL--KFGYFSQHHVDQL 353
I+G +GAGK+TL++ I G+ PT+G+ V R + G QH
Sbjct: 36 IIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQH----- 90
Query: 354 DMNLRCVQLLEA-------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG-------- 394
LL + A P G P+ E ++ L+ VG
Sbjct: 91 ------FNLLSSRTVFENVALPLEIAGVPKAEIEERV-------LELLELVGLEDKADAY 137
Query: 395 --SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
LSGGQK RV AR P L+ DE T+ LD ET I AL + IN+
Sbjct: 138 PAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR 188
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 61/232 (26%), Positives = 96/232 (41%), Gaps = 28/232 (12%)
Query: 234 ANRASSVQSKIKQL----ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPG 289
N +I+Q E++ +L +E EV P + + V+F Y P
Sbjct: 216 LNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR 275
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLKFGYF 345
+PIL + L + IVG++GAGK+T+L+++ +G+ T+ R++
Sbjct: 276 RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335
Query: 346 -------SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR-----QLGGFGVSGDLALQF- 392
Q V D ++ P EE Q+ F S
Sbjct: 336 RRAIGIVPQDTVLFNDTIA---YNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG 392
Query: 393 VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VG LSGG+K RVA AR + P L+LDE T+ LD T +A+ A+ +
Sbjct: 393 VGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE 444
|
Length = 497 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 2e-12
Identities = 59/200 (29%), Positives = 87/200 (43%), Gaps = 57/200 (28%)
Query: 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
I+++ ++F Y P L +V + IVG NG+GK+TL K++ G++ P AG
Sbjct: 4 EIIRVEHISFRY-PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 333 TRTV-HRNL----------KFGYFSQHHVDQL------DMNLRCVQLLEAAFP----GKP 371
T TV L + G Q+ +Q D + AF G P
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQD---------DVAFGLENIGVP 113
Query: 372 QEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDE 421
+EE ++ D AL+ VG LSGGQK RVA A + P+ ++LDE
Sbjct: 114 REEMVERV-------DQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDE 166
Query: 422 PTNHLD-------IETIEAL 434
T+ LD +ET+ L
Sbjct: 167 ATSMLDPRGRREVLETVRQL 186
|
Length = 279 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-12
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 53/187 (28%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+ P+LQL V + IL N+ I G +G GK+TLLKI+ +ISPT+G
Sbjct: 4 NSPLLQLQNVGYL-AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG 62
Query: 333 T-------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQ 361
T TV+ NL F + ++
Sbjct: 63 TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQ------------ 110
Query: 362 LLEAAFPGKPQEE-YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+P + L F + + + + LSGG+K R++ R P L+LD
Sbjct: 111 --------QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD 162
Query: 421 EPTNHLD 427
E T+ LD
Sbjct: 163 EITSALD 169
|
Length = 225 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGT----------RTVHR--NLKFGYFSQHH-------V 350
G NGAGKTT +I+G++ P +G +H+ L GY Q V
Sbjct: 37 GPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTV 96
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG----FGVSGDLALQFVGSLSGGQKSRVAF 406
+ N+ V LE + E + +L F ++ L SLSGG++ RV
Sbjct: 97 ED---NIMAV--LEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEI 150
Query: 407 ARMCMAAPNFLVLDEP 422
AR A P F++LDEP
Sbjct: 151 ARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-12
Identities = 47/191 (24%), Positives = 75/191 (39%), Gaps = 45/191 (23%)
Query: 282 VNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-------- 332
V F Y G P+L ++ L + +VG +G+GK+TL+ +I +G
Sbjct: 6 VTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHD 65
Query: 333 -----------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369
TV N+ +G ++++ R E F
Sbjct: 66 VRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR-EEVEEAARAANAHE--FIM 122
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ E Y +G GV LSGGQ+ R+A AR + P L+LDE T+ LD E
Sbjct: 123 ELPEGYDTVIGERGVK----------LSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 430 TIEALGKAINK 440
+ + A+ +
Sbjct: 173 SERLVQAALER 183
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 5e-12
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 51/198 (25%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
+L+L +V + IL N+ L I I G +G GK+TLLKI+ +ISPT+GT
Sbjct: 2 MLLELKQVGYL-AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 334 ------------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLL 363
TV NL F + Q + D + LL
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPW--QIRNRRPDRA-AALDLL 117
Query: 364 EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
R L ++ ++ LSGG+K R+A R P L+LDE T
Sbjct: 118 A-----------RFALPDSILTKNIT-----ELSGGEKQRIALIRNLQFMPKILLLDEIT 161
Query: 424 NHLDIETIEALGKAINKY 441
+ LD + + I++Y
Sbjct: 162 SALDESNKRNIEEMIHRY 179
|
Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-12
Identities = 45/140 (32%), Positives = 59/140 (42%), Gaps = 19/140 (13%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-TRTVHRNLKFGYFSQH-------HVDQLDMNLRC 359
+ G NG+GKTTLL+I+ G+ P AG L F S H + L
Sbjct: 31 VTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90
Query: 360 VQLLE--AAFPGKPQEEY---RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
++ L A Q E R L GF D V LS GQ+ RVA AR+ ++
Sbjct: 91 LENLRFWHADHSDEQVEEALARVGLNGFE---DRP---VAQLSAGQQRRVALARLLLSGR 144
Query: 415 NFLVLDEPTNHLDIETIEAL 434
+LDEPT LD +
Sbjct: 145 PLWILDEPTTALDKAGVARF 164
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 40/148 (27%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-----RTV------HRNLKFGYFSQH----HV 350
+ ++G +G GK+TLL++I G+ PT+G R V R + F + H
Sbjct: 32 VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM-VFQNYALYPH- 89
Query: 351 DQLDMNLRCVQLLEAAFP----GKPQEEYRRQ-------LGGFGVSGDLALQFVGSLSGG 399
M + + + AF G P+ E ++ LG L + LSGG
Sbjct: 90 ----MTVY--ENI--AFGLKLRGVPKAEIDKRVKEVAKLLG----LEHLLNRKPLQLSGG 137
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q+ RVA AR + P +LDEP ++LD
Sbjct: 138 QRQRVALARALVRKPKVFLLDEPLSNLD 165
|
Length = 338 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 6e-12
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 18/174 (10%)
Query: 275 PILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L +S ++ Y GKP L +V L + ++G +G GKTTLL +I G ++P+ G
Sbjct: 2 CMLNVSHLSLSY-EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60
Query: 333 TRTV-HRNLKFGYFSQHHVDQLD-----MNLRCVQLLEAAFPGKPQEEYRR------QLG 380
+ + R ++ + V Q + +N+ G + + R L
Sbjct: 61 SIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120
Query: 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G +++ LSGG + RV AR P L+LDEP LD T E +
Sbjct: 121 GLE---GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
|
Length = 259 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 7e-12
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 27/147 (18%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGY----------------FSQHHVD 351
+G NGAGKTT ++++ ++ PT+GT V GY VD
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPTSGTARV-----AGYDVVREPRKVRRSIGIVPQYASVD 78
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
+ D+ R + G P++E + L F + G+ A + VG+ SGG + R+ A
Sbjct: 79 E-DLTGRENLEMMGRLYGLPKDEAEERAEELLELFEL-GEAADRPVGTYSGGMRRRLDIA 136
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEAL 434
+ P+ L LDEPT LD T A+
Sbjct: 137 ASLIHQPDVLFLDEPTTGLDPRTRRAI 163
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 7e-12
Identities = 48/171 (28%), Positives = 69/171 (40%), Gaps = 44/171 (25%)
Query: 286 YVPGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341
V GK IL V L G ++G NG+GK+TL K IMG +
Sbjct: 9 SVGGKEILKGVNLTIKKGEV----HALMGPNGSGKSTLAKTIMGH----PKYEVTEGEIL 60
Query: 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF----------GVSGDLALQ 391
F D D+ P+E R +LG F GV L+
Sbjct: 61 FK-----GEDITDLP--------------PEE--RARLGIFLAFQYPPEIPGVKNADFLR 99
Query: 392 FVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+V SGG+K R ++ + P+ +LDEP + LDI+ + + + INK
Sbjct: 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL 150
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-12
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 11/160 (6%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---RTVHRNLKFGYF 345
+ + + + + G NG GKTTLL+I+ G++ P +G +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 346 SQH-----HVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398
++ H+ L L ++ L AA G Q L G++G LS
Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-FEDLPAAQLSA 130
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
GQ+ R+A AR+ ++ +LDEPT LD + L +
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 9e-12
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 31/217 (14%)
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPP-ILQLSEVNFEYVPGK--PILTNV 296
V + ++L + + KP EV FPD + + L+L V+F Y PG+ L N
Sbjct: 306 VIASARRLNDILDQKP---EVT----FPDEQTATTGQALELRNVSFTY-PGQQTKALKNF 357
Query: 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356
L ++ I+G +G+GK+TLL+++ G P G+ T++ Q + + +
Sbjct: 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417
Query: 357 LRCVQL--------LEAAFPGKPQEEYRRQLGGFGVSGDLALQ-------FVG----SLS 397
+ V L L A P EE L G+ L ++G LS
Sbjct: 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLE-KLLESAPDGLNTWLGEGGRRLS 476
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
GG++ R+A AR + +LDEPT LD T +
Sbjct: 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQV 513
|
Length = 573 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+++ ++ + Y K L N+ A SRI ++G NGAGK+TL + GI+ PT+G+
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 334 --------RTVHRNLKF-GYFSQHHVDQL-------DMNLRCVQL-LEAAFPGKPQEEYR 376
+ KF G Q+ DQ+ D+ + L L+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSAL 122
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
LG +L + LSGG+K RVA A + P LVLDEPT LD + ++ L
Sbjct: 123 HMLG----LEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELID 178
Query: 437 AIN 439
+N
Sbjct: 179 FLN 181
|
Length = 277 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGII---SPTAGTRTVH-RNLKFGYFSQH--HVDQLDMNLRC 359
+ I+G +G+GKTTLL I G + T+G + + K F + +V Q D+ L
Sbjct: 36 MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95
Query: 360 VQLLEA-------AFPGKPQEEYRRQLGGFGVSGDLALQFVG-----SLSGGQKSRVAFA 407
+ + E P K + R++ + DLAL +G +SGG++ RV+ A
Sbjct: 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIA 155
Query: 408 RMCMAAPNFLVLDEPTNHLD 427
+ P L+LDEPT+ LD
Sbjct: 156 VQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-11
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
L ++ V+F Y + +L N+ L +I ++G +G+GK+TLL+++ G + P G T
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS 395
V L+ L + Q Y L + +L +F
Sbjct: 61 ---------LDGVPVSDLEKALS------SLISVLNQRPY---LFDTTLRNNLGRRF--- 99
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
SGG++ R+A AR+ + ++LDEPT LD T
Sbjct: 100 -SGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 51/174 (29%), Positives = 79/174 (45%), Gaps = 42/174 (24%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346
+ G+ +L V L + I+G NGAGK+TLLK + G +SP +G T +
Sbjct: 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT---------LN 61
Query: 347 QHHVDQL---DM-NLRCV--QLLEAAFP-----------------GKPQEEYR---RQLG 380
++ ++ R V Q AFP +P+E+ R + L
Sbjct: 62 GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALA 121
Query: 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMC------MAAPNFLVLDEPTNHLDI 428
+SG LA + +LSGG++ RV AR+ + + +L LDEPT+ LDI
Sbjct: 122 ATDLSG-LAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 22/144 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDM 355
I G NGAGKTTLL+I+ G++ P AG + H+ L Y + ++
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALL--YLGHQPGIKTEL 90
Query: 356 ----NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
NL Q L G++G L G LS GQ+ RVA AR+ +
Sbjct: 91 TALENLHFWQRF---HGSGNAATIWEALAQVGLAGLEDLPV-GQLSAGQQRRVALARLWL 146
Query: 412 AAPNFLVLDEPTNHLDIETIEALG 435
+ +LDEP LD E + L
Sbjct: 147 SPAPLWILDEPFTALDKEGVALLT 170
|
Length = 209 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-11
Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 31/186 (16%)
Query: 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
+LQ + Y G +L NV + IVG +G+GK+TLL ++ G+ +PT+
Sbjct: 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTS 63
Query: 332 G---------------TRTVHRNLKFGYFSQHH--------VDQLDMNLRCVQLLEAAFP 368
G + RN K G+ Q H ++ + M L L+ P
Sbjct: 64 GDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL----LIGKKKP 119
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ L G+ A LSGG++ RVA AR + P ++ DEPT +LD
Sbjct: 120 AEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178
Query: 429 ETIEAL 434
+++
Sbjct: 179 RNADSI 184
|
Length = 233 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-11
Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 29/173 (16%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L L V+ +PG +L NV + ++G +G GK+TLL ++G + AG +
Sbjct: 2 MLCLKNVSLR-LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL---AGQFS 57
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV----------------QLLEAAFPGKPQEEYRRQ- 378
L + +D L R + Q L A P + RR
Sbjct: 58 CTGELWLN---EQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNA 114
Query: 379 ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ G Q +LSGGQ++RVA R +A P L+LDEP + LD
Sbjct: 115 ANAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I I+G NG GKTT +K++ G+I P G+ +LK Y Q+ D + LL +
Sbjct: 370 IGILGPNGIGKTTFVKLLAGVIKPDEGSEE---DLKVSYKPQYISPDYDGTVE--DLLRS 424
Query: 366 AFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP-NFLVLDEP 422
A Y + + + DL + V LSGG+ RVA A ++ + +LDEP
Sbjct: 425 AIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAIA-AALSREADLYLLDEP 482
Query: 423 TNHLDIETIEALGKAINKYT 442
+ +LD+E + K I ++
Sbjct: 483 SAYLDVEQRIIVAKVIRRFI 502
|
Length = 591 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 3e-11
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 23/152 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
++G NGAGKTT L+++ G++ P AG TV G+ + L V +
Sbjct: 36 LLGPNGAGKTTTLRMLAGLLEPDAGFATVD-----GFDVVKEPAEARRRLGFVSDSTGLY 90
Query: 368 PGKPQEEYRRQLGGF-GVSGD--------LALQF---------VGSLSGGQKSRVAFARM 409
E G G+ GD LA + VG S G + +VA AR
Sbjct: 91 DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARA 150
Query: 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ P L+LDEPT LD+ AL + I +
Sbjct: 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQL 182
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 4e-11
Identities = 49/174 (28%), Positives = 75/174 (43%), Gaps = 23/174 (13%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L+ + Y GK +L V L + IVG +G+GK+TLL ++ G+ +PT+G
Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60
Query: 333 TRTVH---------------RNLKFGYFSQHHVDQLDMN-LRCVQ---LLEAAFPGKPQE 373
+ RN K G+ Q H D L V L+ + +E
Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ LSGG++ RVA AR + P+ ++ DEPT +LD
Sbjct: 121 RAYEMLEKVGL-EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLD 173
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 4e-11
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 303 ESRIC-IVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNL-KFGYFSQHHVDQL------ 353
E I ++G+NGAGKTTLL++I ++ P +G T+ + + F + + L
Sbjct: 27 EGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86
Query: 354 --DMNLRCVQLLEAAFPGKPQEEYRRQLG----GFGVSGDLALQFVGSLSGGQKSRVAFA 407
+ R A G ++E + ++ + + + VG S G K +VA A
Sbjct: 87 YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIA 145
Query: 408 RMCMAAPNFLVLDEPTNHLDIET 430
R + P+ LVLDEPT+ LDI T
Sbjct: 146 RALVHDPSILVLDEPTSGLDIRT 168
|
Length = 245 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-11
Identities = 58/230 (25%), Positives = 91/230 (39%), Gaps = 58/230 (25%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSP-PI---LQLSEVNFEYV--PGKPILTNVCLGAT 301
ERL EL + E +K P P P+ ++ +VNF Y P +P L + L
Sbjct: 309 ERLIELL----QAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVR 364
Query: 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAG----------------------------- 332
+ +VG +GAGK+TL ++++ P +G
Sbjct: 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPV 424
Query: 333 --TRTVHRNLKFGYFSQHHVDQLDMNLR--CVQLLEAAFPGKPQEEYRRQLGGFGVSGDL 388
+V N+++G D D + F E Y LG GV+
Sbjct: 425 LFAASVMENIRYG-----RPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVT--- 476
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
LSGGQ+ R+A AR + L+LDE T+ LD E+ + + +A+
Sbjct: 477 -------LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL 519
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 17/135 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHRNLKFGYFSQHHVDQLDMNL 357
++G NGAGKTT L++++G+ P AG+ R H + G Q D LD +
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQ--FDNLDPDF 95
Query: 358 RCVQ--LLEAAFPGKPQEEYRRQLGG---FGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
+ L+ + G R + F + A VG LSGG K R+ AR +
Sbjct: 96 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN 155
Query: 413 APNFLVLDEPTNHLD 427
P+ LVLDEPT LD
Sbjct: 156 DPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 48/185 (25%)
Query: 288 PG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------RN 339
PG KPIL + + I+G +G+GK+TL ++++GI PT+G +V R
Sbjct: 345 PGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG--SVRLDGADLRQ 402
Query: 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD------------ 387
+H + L + V+L F G E R FG D
Sbjct: 403 WDREQLGRH-IGYLPQD---VEL----FDGTIAENIAR----FGEEADPEKVIEAARLAG 450
Query: 388 ---LALQF-------VG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
L L+ +G +LSGGQ+ R+A AR P +VLDEP ++LD E A
Sbjct: 451 VHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAA 510
Query: 434 LGKAI 438
L AI
Sbjct: 511 LAAAI 515
|
Length = 580 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 7e-11
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL++ E+N+ Y G L + + I+G NGAGK+TL + + GI+ P++G
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG--R 62
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV------QLLEAAF----------PGKPQEEYRRQ- 378
+ + K +S+ + +L ++ V QL A+ P++E R++
Sbjct: 63 ILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 379 ---LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ L + LS GQK RVA A + + P LVLDEPT LD
Sbjct: 123 DNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
|
Length = 283 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-11
Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 17/184 (9%)
Query: 268 DTELLS--PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325
E L PP+L + F +P+ + + + GDNGAGKTTLL+++ G
Sbjct: 1 MIEPLHTAPPLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAG 59
Query: 326 IISPTAG--------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQ---LLEAAFPGKPQEE 374
++ +G R+ Y H+ L +L ++ L + ++
Sbjct: 60 LLHVESGQIQIDGKTATRGDRSRFMAYLG--HLPGLKADLSTLENLHFLCGLHGRRAKQM 117
Query: 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++G V LS GQK R+A AR+ ++ +LDEP +LD+E I +
Sbjct: 118 PGSALAIVGLAG-YEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV 176
Query: 435 GKAI 438
+ I
Sbjct: 177 NRMI 180
|
Length = 214 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 8e-11
Identities = 48/171 (28%), Positives = 71/171 (41%), Gaps = 42/171 (24%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------------- 332
G+ +L +V L + I+G NGAGK+TLL+ + G +SP +G
Sbjct: 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAE 73
Query: 333 ---TRTV---HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR---RQLGGFG 383
R V H +L F F+ V V + A E+ L
Sbjct: 74 LARRRAVLPQHSSLSFP-FTVEEV---------VAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 384 VSGDLALQFVGSLSGGQKSRVAFAR------MCMAAPNFLVLDEPTNHLDI 428
++ LA + LSGG++ RV AR P +L+LDEPT+ LD+
Sbjct: 124 LAH-LAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 9e-11
Identities = 51/179 (28%), Positives = 79/179 (44%), Gaps = 30/179 (16%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLES-RICIV-GDNGAGKTTLLKIIMGIISPTAGTR 334
L+++ ++F Y + L +V T+ R + G NGAGK+TL ++ + G
Sbjct: 2 LEVAGLSFRYGA-RRALDDVSF--TVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 335 TVHRNLKFGYFSQHH----------VDQ---LDMNLRCVQLLE--AAFPGKPQEEYR--- 376
+V G+ + V Q LD++L Q L AA G + E R
Sbjct: 59 SV-----AGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARI 113
Query: 377 -RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G++ + A V L+GG + RV AR + P L+LDEPT LD + A+
Sbjct: 114 AELLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 9e-11
Identities = 53/177 (29%), Positives = 85/177 (48%), Gaps = 26/177 (14%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ EV++ GK IL ++ + + IVG +GAGK+TL+K+I +I PT G+ +
Sbjct: 4 IEFKEVSY-SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 337 HRNLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQE--EYRRQLGG----------- 381
+D +D+ + + + F G ++ EY L G
Sbjct: 63 DGV------DIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLS 116
Query: 382 -FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---IETIEAL 434
G++ + A + V +LSGG+ RV+ AR P L+LDEPT+ LD E IE L
Sbjct: 117 IVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173
|
Length = 241 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 9e-11
Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 309 VGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH---------HVDQL--DMNL 357
+G NGAGKTT LKI+ G++ PT+G V + + + QL D+ +
Sbjct: 53 IGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPV 112
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFARMCMAAP 414
L AA P ++++L +L V LS GQ+ R A + P
Sbjct: 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEP 172
Query: 415 NFLVLDEPTNHLDIETIEALGKAINKY 441
L LDEPT LD+ E + + +Y
Sbjct: 173 EILFLDEPTIGLDVVAQENIRNFLKEY 199
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 9e-11
Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 28/150 (18%)
Query: 287 VPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----L 340
V L +V + RI ++G NGAGK+TLL+++ GI P +GT TV L
Sbjct: 32 VGEFWALKDVSF--EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL 89
Query: 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR---------QLGGFGVSGDLALQ 391
G + + N+ L G ++E +LG F DL
Sbjct: 90 GLGGGFNPELTGRE-NIY----LNGRLLGLSRKEIDEKIDEIIEFSELGDF---IDLP-- 139
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
V + S G K+R+AFA P+ L++DE
Sbjct: 140 -VKTYSSGMKARLAFAIATALEPDILLIDE 168
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-10
Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--- 332
+++ V+ Y+ G+ L V + G +GAGK+TLLK+I GI P+AG
Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60
Query: 333 ------TRTVHRNLKF-----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--- 378
TR +R + F G Q H +D + + G ++ RR+
Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSA 120
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
L G+ D A F LSGG++ RV AR + P L+ DEPT +LD +AL +
Sbjct: 121 ALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLD----DALSEG 175
Query: 438 I 438
I
Sbjct: 176 I 176
|
Length = 222 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 309 VGDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDMN 356
+G NGAGK+T +KII G + P +G+ + V RN+ GY +H+ LDM
Sbjct: 34 LGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNI--GYLPEHNPLYLDMY 91
Query: 357 LRCVQLLEAAFPGKPQEEYRRQ------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
+R A G + +++ L G + +G LS G + RV A+
Sbjct: 92 VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE---QHKKIGQLSKGYRQRVGLAQAL 148
Query: 411 MAAPNFLVLDEPTNHLD---IETIEALGKAINK 440
+ P L+LDEPT LD + I + K I K
Sbjct: 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQHHVDQLDM 355
++G NGAGKTT +K++ ++ PT+G R V R + G Q ++
Sbjct: 31 LLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRI--GIVFQDLSVDDEL 88
Query: 356 NLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ A G P E R + L G+ + A + V + SGG + R+ AR +
Sbjct: 89 TGWENLYIHARLYGVPGAERRERIDELLDFVGL-LEAADRLVKTYSGGMRRRLEIARSLV 147
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L LDEPT LD +T + + I K
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 61/225 (27%), Positives = 88/225 (39%), Gaps = 44/225 (19%)
Query: 227 IDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV-------VLKFPDTELLSPP--IL 277
I +R R + + ++ + E + + L +P L
Sbjct: 349 IADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTL 408
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--RT 335
LSE+NFE PG R+ I G++GAGKT+LL+ + G+ +G
Sbjct: 409 -LSELNFEVRPG--------------ERLLITGESGAGKTSLLRALAGLWPWGSGRISMP 453
Query: 336 VHRNLKF----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA-- 389
L F Y Q LR A P E L G+ GDLA
Sbjct: 454 ADSALLFLPQRPYLPQG-------TLREALCYPNAAPDFSDAELVAVLHKVGL-GDLAER 505
Query: 390 LQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L LSGG++ R+AFAR+ + P ++ LDE T+ LD ET
Sbjct: 506 LDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 50/169 (29%), Positives = 69/169 (40%), Gaps = 50/169 (29%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L ++ L + ++G +G+GKTTLL+II G+ T+G H R+ K
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKV 76
Query: 343 GYFSQH-----HVDQLD-------------------MNLRCVQLLEAAFPGKPQEEYRRQ 378
G+ QH H+ D + + QLLE Q
Sbjct: 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV-----------Q 125
Query: 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L LA ++ LSGGQK RVA AR P L+LDEP LD
Sbjct: 126 LA------HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 48/166 (28%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R-- 334
L ++ L +C++G +G GKTTLL+II G+ TAGT R
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY 78
Query: 335 -------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381
TV N+ +G ++ + + ++ R +LL+ L G
Sbjct: 79 GIVFQSYALFPNLTVADNIAYGLKNRG-MGRAEVAERVAELLD--------------LVG 123
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
S ++ G LSGGQ+ RVA AR +P L+LDEP + LD
Sbjct: 124 LPGSER---KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 2e-10
Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 28/150 (18%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV-QLL 363
+ I+G +G+GK+TLL+ + G+ P +G+ TV G + + +L + V Q
Sbjct: 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD-GEDVGD--KKDILKLRRKVGMVFQQF 86
Query: 364 EAAFP----------------GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSR 403
FP + E R + L G++ D A + LSGGQ+ R
Sbjct: 87 NL-FPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQR 144
Query: 404 VAFAR-MCMAAPNFLVLDEPTNHLDIETIE 432
VA AR + M P ++ DEPT+ LD E +
Sbjct: 145 VAIARALAM-DPKVMLFDEPTSALDPELVG 173
|
Length = 240 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
V LSGG++ RVA R+ + P+ L+LDEPTNHLD E++ L
Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWL 202
|
Length = 556 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-10
Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 60/191 (31%)
Query: 264 LKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323
+ E + L+ ++N E G+ L IVG G+GK++LL +
Sbjct: 8 FTWDSGEQETSFTLK--DINLEVPKGE--LV------------AIVGPVGSGKSSLLSAL 51
Query: 324 MGIISPTAGTRTVHRNLKFGYFSQ----------------HHVDQ--LDMNLRCVQLLE- 364
+G + +G+ +V Y SQ D+ + ++ L
Sbjct: 52 LGELEKLSGSVSVPG--SIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPD 109
Query: 365 -AAFPGKPQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVL 419
P GDL +G +LSGGQK R++ AR + + +L
Sbjct: 110 LEILPD----------------GDLTE--IGEKGINLSGGQKQRISLARAVYSDADIYLL 151
Query: 420 DEPTNHLDIET 430
D+P + +D
Sbjct: 152 DDPLSAVDAHV 162
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 44/142 (30%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHV---- 350
S + ++G +G+GK+TLL+II G+ P +G ++ R+ K G+ QH+
Sbjct: 27 SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKH 86
Query: 351 ----DQLDMNLRCVQLLEAAFPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVA 405
D + L + +A + +E QL G G + LSGGQ+ RVA
Sbjct: 87 LTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR------YPNQLSGGQRQRVA 140
Query: 406 FARMCMAAPNFLVLDEPTNHLD 427
AR P L+LDEP LD
Sbjct: 141 LARALAVEPQVLLLDEPFGALD 162
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 30/149 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAG----------------TRTVHRNLKFGYFSQHH 349
I+G++G+GK+TLL II + +G R K GY Q+
Sbjct: 27 YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRRE-KLGYLFQNF 85
Query: 350 -------VDQ-LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
V++ LD+ L+ +L + + +E+ + L G++ L Q + LSGG++
Sbjct: 86 ALIENETVEENLDLGLKYKKLSK----KEKREKKKEALEKVGLNLKLK-QKIYELSGGEQ 140
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDIET 430
RVA AR + P ++ DEPT LD +
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKN 169
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 25/164 (15%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------HRNL 340
+L + L + I+G +G+GK+TLL+ I + P +GT + +N+
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 341 -----KFGYFSQH-----HVDQLD---MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD 387
K G Q H+ L+ + V+ + A + +E L G++ D
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA---EAEERALELLEKVGLA-D 127
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
A + LSGGQ+ RVA AR P ++ DEPT+ LD E +
Sbjct: 128 KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELV 171
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 52/176 (29%), Positives = 80/176 (45%), Gaps = 42/176 (23%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL---DMN-LRCV 360
R ++G NG GK+T +KI+ G + P+AG ++ N + G Q DQ + L V
Sbjct: 29 RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQ---DQFAFEEFTVLDTV 85
Query: 361 -----QLLEA--------AFPGKPQEEYRR---------QLGGFGV---SGDLAL----- 390
+L E A P +E+ + ++ G+ +G+L L
Sbjct: 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIP 145
Query: 391 --QFVGSLSG---GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
Q G +S G K RV A+ + P+ L+LDEPTN+LDI TI L +N+
Sbjct: 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER 201
|
Length = 530 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
++ + V+ Y K +L +V L I+G NGAGK+TLL ++ ++ +G T
Sbjct: 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 336 VH-RNLKFGYFSQ---------HHVDQLDMNLRCVQLLE-AAFP---GKPQEEYRRQLGG 381
+ L S+ + ++ L L+ FP G+ +E RR +
Sbjct: 60 IDGLELT-STPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 382 ----FGVSGDLALQFVGSLSGGQKSRVAFARMCMAA-PNFLVLDEPTNHLDI 428
+ DL+ +++ LSGGQ+ R AF M +A ++++LDEP N+LD+
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQR-AFIAMVLAQDTDYVLLDEPLNNLDM 168
|
Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 47/204 (23%)
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
D L + + V+F Y +L N+ L + +VG G+GK+TL ++MG
Sbjct: 331 NDDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
Query: 327 ISPTAGT-----RTV----HRNLKFGY-----------------------FSQHHVDQLD 354
T G R + H L+ G S+ V Q
Sbjct: 391 YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQA- 449
Query: 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414
L VQL E A P Y LG G +LS GQK +A AR+ + P
Sbjct: 450 --LETVQLAELA-RSLPDGLYTP-LGEQG----------NNLSVGQKQLLALARVLVQTP 495
Query: 415 NFLVLDEPTNHLDIETIEALGKAI 438
L+LDE T ++D T +A+ +A+
Sbjct: 496 QILILDEATANIDSGTEQAIQQAL 519
|
Length = 592 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 6e-10
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 35/151 (23%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------RTV----HRNLKF-GYFSQHH--VDQ 352
I G NGAGKT+LL+I+ G+ P AG R H++L + G H +
Sbjct: 32 IEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG----HQPGIKT 87
Query: 353 L---DMNLRCVQLLEAAFPGKPQEEYRRQ-LGGFGVSG--DLALQFVGSLSGGQKSRVAF 406
NLR Q G +E + L G++G D+ V LS GQ+ RVA
Sbjct: 88 ELTALENLRFYQ----RLHGPGDDEALWEALAQVGLAGFEDVP---VRQLSAGQQRRVAL 140
Query: 407 ARMCMAAPNFLVLDEPTNHLD---IETIEAL 434
AR+ + +LDEP +D + +EAL
Sbjct: 141 ARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
|
Length = 204 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 6e-10
Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 22/155 (14%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLDMNLR 358
I+G G+GK+ LL+ I G I P +G T Y Q++ M
Sbjct: 30 ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMT-- 87
Query: 359 CVQ------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
V L + K E ++ L + +LSGG++ RVA AR +
Sbjct: 88 -VYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVV 146
Query: 413 APNFLVLDEPTNHLDIET----IEALGKAINKYTF 443
P L+LDEP + LD+ T E L K ++
Sbjct: 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGV 181
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 8e-10
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 42/169 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--------------RTVHR--------------- 338
++G NGAGKTTL +I G P++GT R
Sbjct: 35 LIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGL 94
Query: 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
N+ G ++ + L R + A +E R L G+ G+LA + G
Sbjct: 95 TVLENVAVGAHARLGLSGLLGRPRARKEEREA-----RERARELLEFVGL-GELADRPAG 148
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPT---NHLDIETIEALGKAINK 440
+LS GQ+ R+ AR P L+LDEP N + E + L + +
Sbjct: 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
|
Length = 250 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 8e-10
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 20/147 (13%)
Query: 301 TLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFS----------Q 347
TL + I+G+NG+GK+TL K++ G+I PT+G ++ L FG +S Q
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94
Query: 348 HHVDQLDMNLRCVQLLEAAF-------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
L+ LR Q+L+ P + +++ L G+ D A + L+ GQ
Sbjct: 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQ 154
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
K RVA AR + P ++ DE LD
Sbjct: 155 KQRVALARALILRPKIIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 9e-10
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 34/155 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM------------ 355
++G NGAGK+TLLK+I GI+ PT+G F H + D+
Sbjct: 31 LLGPNGAGKSTLLKMITGILRPTSGEI---------IFDGHPWTRKDLHKIGSLIESPPL 81
Query: 356 --------NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407
NL+ L G P L + + + S G K R+ A
Sbjct: 82 YENLTARENLKVHTTLL----GLPDSRIDEVLNIVDL-TNTGKKKAKQFSLGMKQRLGIA 136
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ P L+LDEPTN LD I+ L + I +
Sbjct: 137 IALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP 171
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 22/157 (14%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------------HRNLKFGYFSQHH 349
+ +G NGAGK+T LK++ G++ PT+G V L G Q
Sbjct: 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLW 110
Query: 350 VDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF----GVSGDLALQFVGSLSGGQKSRVA 405
D L +++L+ + P +E+ +L + G L V LS GQ+ R
Sbjct: 111 WDL--PALDSLEVLKLIYE-IPDDEFAERLDFLTEILDLEGFLKWP-VRKLSLGQRMRAE 166
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
A + P L LDEPT LD+ + + + +Y
Sbjct: 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203
|
Length = 325 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 12/142 (8%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV-------HRNLKFGYFSQHHVDQLDMNLRCV 360
++G NGAGKTT ++I+G++ PT G T + GY + M +
Sbjct: 33 LLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ 92
Query: 361 QLLEAAFPGKPQEEYRRQLGG----FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416
A G P+ E +++L + G + + LS G + ++ F + P
Sbjct: 93 LKYLAELKGMPKAEIQKKLQAWLERLEIVGKKT-KKIKELSKGNQQKIQFISAVIHEPEL 151
Query: 417 LVLDEPTNHLDIETIEALGKAI 438
L+LDEP + LD +E L AI
Sbjct: 152 LILDEPFSGLDPVNVELLKDAI 173
|
Length = 300 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 1e-09
Identities = 52/176 (29%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTA 331
+++ +VN+ Y P P + LE S ++G G+GK+TLL+ + G++ PT
Sbjct: 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTE 60
Query: 332 GTRTVHRNLKFGYFSQHHVDQLDMNLRCV------QLLE------AAFP----GKPQEEY 375
G TV + Q + + + V QL E AF G P+E+
Sbjct: 61 GKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKA 120
Query: 376 RR----QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +L G++ + + LSGGQ RVA A + P LVLDEPT LD
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 51/193 (26%), Positives = 75/193 (38%), Gaps = 51/193 (26%)
Query: 277 LQLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ + F Y P P +L+N+ L I IVG +G+GK+TL K++ + +P G
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 336 VHRNLKFGYFSQHHVDQLDMN-LR---CVQLLEAAF-------------PGKPQEE--YR 376
V + D LR V L E PG P E +
Sbjct: 516 V---------DGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHA 566
Query: 377 RQLGGFGVSGDLALQFV---------------GSLSGGQKSRVAFARMCMAAPNFLVLDE 421
+L G A F+ +LSGGQ+ R+A AR + P L+ DE
Sbjct: 567 AKLAG-------AHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDE 619
Query: 422 PTNHLDIETIEAL 434
T+ LD E+ +
Sbjct: 620 ATSALDYESEALI 632
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 40/174 (22%)
Query: 279 LSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV- 336
L ++N E PG+ ILT G +G+GKTTLL +I G+ S G+ V
Sbjct: 21 LFDINLEINPGEIVILT---------------GPSGSGKTTLLTLIGGLRSVQEGSLKVL 65
Query: 337 ---------------HRNLKFGYFSQHH--VDQL--DMNLR-CVQLLEAAFPGKPQEEYR 376
RN+ GY Q H + L N++ ++L + +E R
Sbjct: 66 GQELYGASEKELVQLRRNI--GYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERAR 123
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ GD + +LSGGQK RVA AR + P ++ DEPT LD ++
Sbjct: 124 AMLEAVGL-GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKS 176
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 30/150 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT K++ G++ P G V LK Y Q+ ++
Sbjct: 368 IGIVGPNGIGKTTFAKLLAGVLKPDEGE--VDPELKISYKPQY--------------IKP 411
Query: 366 AFPGKPQEEYRRQLGGFGVS------------GDLALQFVGSLSGGQKSRVAFARMCMAA 413
+ G ++ R G S L + V LSGG+ RVA A C++
Sbjct: 412 DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIA-ACLSR 470
Query: 414 PNFL-VLDEPTNHLDIETIEALGKAINKYT 442
L +LDEP+ HLD+E A+ KAI +
Sbjct: 471 DADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
|
Length = 590 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 1e-09
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 40/137 (29%)
Query: 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGT--RTVHRNLKF----GYFSQHHVDQLDMNL 357
R+ I G +G GK++L + + G+ +G +L F Y L
Sbjct: 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPL-------GTL 80
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
R QL +P D+ LSGG++ R+AFAR+ + P F+
Sbjct: 81 RE-QL---IYP----------------WDDV-------LSGGEQQRLAFARLLLHKPKFV 113
Query: 418 VLDEPTNHLDIETIEAL 434
LDE T+ LD E+ + L
Sbjct: 114 FLDEATSALDEESEDRL 130
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 51/171 (29%), Positives = 70/171 (40%), Gaps = 25/171 (14%)
Query: 282 VNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339
V F Y P P IL N+ L + IVG +G+GK+TL K+I P G V +
Sbjct: 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHD 65
Query: 340 ----------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE---EYRRQLGGFGVSG 386
+ G Q + + N + A PG E E + G
Sbjct: 66 LALADPAWLRRQVGVVLQ---ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFIS 122
Query: 387 DLAL---QFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+L VG LSGGQ+ R+A AR + P L+ DE T+ LD E+
Sbjct: 123 ELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 53/176 (30%), Positives = 80/176 (45%), Gaps = 26/176 (14%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++ V++ Y PG P+ L N+ S + +VG G+GK+TL++ ++ P++G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 333 T----------RTVHRNLK-----FGYFSQHHVDQLDMN--LRCVQLLEAAFPGKPQEEY 375
T T ++NLK Q QL N L+ V+ F G ++E
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF-GFSEDEA 121
Query: 376 RRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ + L G+S DL + LSGGQ RVA A + P L LDEP LD
Sbjct: 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
|
Length = 287 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHV------ 350
+ ++G +G+GKTTLL++I G+ P +GT + G+ QH+
Sbjct: 31 VALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMT 90
Query: 351 --DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
D + LR E + + + L + LA ++ LSGGQ+ RVA AR
Sbjct: 91 VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALAR 149
Query: 409 MCMAAPNFLVLDEPTNHLD 427
P L+LDEP LD
Sbjct: 150 ALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 151 WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQ 210
WLE +L ++P T++ V+HDR+FLD+V I L R + GNY ++ + K ++L ++
Sbjct: 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEE 260
Query: 211 REIEAQR---MHRE 221
++ EA R + RE
Sbjct: 261 KQ-EAARQKALKRE 273
|
Length = 556 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 48/198 (24%), Positives = 78/198 (39%), Gaps = 48/198 (24%)
Query: 275 PILQLSEVNFEYVPGKPI-LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
I+ V+F+Y L +V IVG NG+GK+T+ K+++GI +G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 334 RTVHRNLKFGYFSQHHVDQLDM-NLR-----CVQLLEAAFPGK---------------PQ 372
+++ + + LR Q + F G P
Sbjct: 66 I---------FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPY 116
Query: 373 EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+E R++ AL+ V +LSGGQK RVA A + P+ ++LDE
Sbjct: 117 DEMHRRVSE-------ALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169
Query: 423 TNHLDIETIEALGKAINK 440
T+ LD + + L + K
Sbjct: 170 TSMLDPDARQNLLDLVRK 187
|
Length = 269 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 54/176 (30%), Positives = 73/176 (41%), Gaps = 26/176 (14%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLE----SRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+ L V++ Y G P L S +G G+GK+T+++++ G+ PT G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 333 TRTVHRNL---------------KFGYFSQHHVDQL--DMNLRCVQLLEAAFPGKPQEEY 375
+ V L K G Q QL + L+ V F G QEE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GVSQEEA 121
Query: 376 ----RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
R +L G+S L + LSGGQ RVA A + P LVLDEPT LD
Sbjct: 122 EALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 53/187 (28%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL+ ++ + Y G L + A + ++G NGAGK+TL GI+ PT+G
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 336 VHRN-LKF------------GYFSQHHVDQL------------DMNLRCVQLLEAAFPGK 370
+ +K+ G Q+ DQL +NL G
Sbjct: 61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-----------GL 109
Query: 371 PQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLD 420
+EE +++ AL+ VG LSGGQK RVA A + P +VLD
Sbjct: 110 SKEEVEKRVKE-------ALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD 162
Query: 421 EPTNHLD 427
EPT+ LD
Sbjct: 163 EPTSGLD 169
|
Length = 275 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 3e-09
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 34/190 (17%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+++L V++ Y G P L N+ L I I+G NG+GK+TL + G++ P G +
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KV 59
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK---------------PQEEYRRQLG 380
+ + G FS+ + + + Q E F G+ P E R+++
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGI-VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRV- 117
Query: 381 GFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
D AL +G +LSGGQ VA A + P L+ DE T+ LD ++
Sbjct: 118 ------DRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 431 IEALGKAINK 440
A+ + I K
Sbjct: 172 GIAVLERIKK 181
|
Length = 274 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 3e-09
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 58/201 (28%)
Query: 279 LSEVNFEYV--PGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
V+F Y P PIL + L G T + +VG +G GK+T++ ++ PT+G
Sbjct: 3 FKNVSFRYPSRPDVPILKGLSLTIPPGKT----VALVGSSGCGKSTVVSLLERFYDPTSG 58
Query: 333 TRTVH----RNL-------KFGYFSQHHVDQLDMNLR-----------CVQLLEAA---- 366
+ R+L + G SQ V D + ++ EAA
Sbjct: 59 EILLDGVDIRDLNLRWLRSQIGLVSQEPV-LFDGTIAENIRYGKPDATDEEVEEAAKKAN 117
Query: 367 -------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
P Y +G G LSGGQK R+A AR + P L+L
Sbjct: 118 IHDFIMSLPDG----YDTLVGERG----------SQLSGGQKQRIAIARALLRNPKILLL 163
Query: 420 DEPTNHLDIETIEALGKAINK 440
DE T+ LD E+ + + +A+++
Sbjct: 164 DEATSALDAESEKLVQEALDR 184
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 12/146 (8%)
Query: 283 NFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF 342
V L ++ R+ I+G NGAGK+TLLK+I GI PT+G V +
Sbjct: 33 GGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAP 92
Query: 343 GY-FSQHHVDQLDMNL---RCVQLLEAAFPGKPQEEYRRQLG---GFGVSGDLALQFVGS 395
D L + L G ++E ++ F GD Q V +
Sbjct: 93 LIELGA----GFDPELTGRENIYLR-GLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKT 147
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDE 421
S G +R+AF+ P+ L+LDE
Sbjct: 148 YSSGMYARLAFSVATHVEPDILLLDE 173
|
Length = 249 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHRNLKFGYFSQHHVDQLDM 355
+ I+G +GAGK+TLL +I G I P +G T Q + L
Sbjct: 26 IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQEN--NLFA 83
Query: 356 NLRCVQ---------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
+L Q L A + + +Q+G D + LSGGQ+ RVA
Sbjct: 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IADYLDRLPEQLSGGQRQRVAL 139
Query: 407 ARMCMAAPN-FLVLDEPTNHLD 427
AR C+ PN L+LDEP + LD
Sbjct: 140 AR-CLVRPNPILLLDEPFSALD 160
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 4e-09
Identities = 63/231 (27%), Positives = 95/231 (41%), Gaps = 52/231 (22%)
Query: 245 KQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLES 304
+E + E++ E EVEV PI+++ V+ Y+ + +LE
Sbjct: 259 VFMEGVSEVEK-ECEVEV----------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEV 307
Query: 305 R----ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-----------------RNLKF- 342
+ IVG +GAGKTTL KII G++ PT+G V R ++
Sbjct: 308 KEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYI 367
Query: 343 GYFSQH-----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLAL--- 390
G Q H LD L EA P E R + L G + A
Sbjct: 368 GILHQEYDLYPHRTVLD------NLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEIL 421
Query: 391 -QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
++ LS G++ RVA A++ + P ++LDEPT +D T + +I K
Sbjct: 422 DKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK 472
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 31/171 (18%)
Query: 281 EVNFEYVPGKPILTNVCLGATLES---RIC-IVGDNGAGKTTLLKIIMGIISPTAGT--- 333
E+NF L N L A I + G +G+GKT+L+ +I G+ P G
Sbjct: 3 ELNFRQR-----LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIEL 57
Query: 334 --RTVH---RNL-------KFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQL 379
R + + + + GY Q +L + L + Q + L
Sbjct: 58 NGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYTVRGNLRYGMWKSMRAQFDQLVAL 115
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
G L ++ G+LSGG+K RVA R + AP L++DEP LD+
Sbjct: 116 LGIE---HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163
|
Length = 352 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 20/151 (13%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVH-------RNLKFGYFSQHH--VDQ 352
++G+NGAGK+TL+KI+ G+ P +G + V L G QH V
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93
Query: 353 LDM--NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL---QFVGSLSGGQKSRVAFA 407
L + N+ + L + + + R ++ L + V LS G++ RV
Sbjct: 94 LTVAENI-ILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEIL 152
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
+ L+LDEPT L + + L + +
Sbjct: 153 KALYRGARLLILDEPTAVLTPQEADELFEIL 183
|
Length = 501 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 46/206 (22%), Positives = 79/206 (38%), Gaps = 57/206 (27%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT---- 333
+ +V+F Y + + +V A + IVG GAGK+TL+ ++ + P +G
Sbjct: 336 EFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
R++ N++ G + + AA
Sbjct: 396 GTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEE----------MRAAA 445
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+ + R+ G+ VG LSGG++ R+A AR + P L+LDE
Sbjct: 446 ERAQAHDFIERKPDGYDT-------VVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 423 TNHLDIETIEALGKAI-----NKYTF 443
T+ LD+ET + A+ + TF
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTF 524
|
Length = 588 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 5e-09
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 34/181 (18%)
Query: 272 LSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
++++ V+F Y L NV + I+G NG+GK+T+ KI+ G++ P
Sbjct: 3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ 62
Query: 331 AGTRTVHRNLKFGY-FSQHHVDQLDMNLRCV------QLLEA------AF--------PG 369
+G + G S+ ++ ++ + + Q + A AF P
Sbjct: 63 SGEIKI-----DGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPK 117
Query: 370 KPQ---EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
K + ++ +++G D + +LSGGQK RVA A + P ++ DE T+ L
Sbjct: 118 KMKDIIDDLAKKVG----MEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSML 173
Query: 427 D 427
D
Sbjct: 174 D 174
|
Length = 271 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-09
Identities = 42/149 (28%), Positives = 64/149 (42%), Gaps = 42/149 (28%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL--------KFGYFSQH-----HVD 351
++G +G GKTTLL++I G +PT+G + +++ Q+ H+
Sbjct: 29 FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLT 88
Query: 352 QLDMNLRCVQLLEAAFP----GKPQEEYRR---------QLGGFGVSGDLALQFVGSLSG 398
+ N+ AF P+ E + QL G+ A + LSG
Sbjct: 89 VFE-NI--------AFGLRLKKLPKAEIKERVAEALDLVQLEGY------ANRKPSQLSG 133
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GQ+ RVA AR + P L+LDEP LD
Sbjct: 134 GQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 5e-09
Identities = 64/242 (26%), Positives = 94/242 (38%), Gaps = 75/242 (30%)
Query: 234 ANRASSVQSKIKQLERLPELKPI-EKEVEVVLKFPDTELLSPPILQLSEVNFEYVP-GKP 291
+N S+ + I ER KPI E EV D LS I ++ V F Y P G
Sbjct: 412 SNTLISILAVIPLWERA---KPILEALPEVDEAKTDPGKLSGAI-EVDRVTFRYRPDGPL 467
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD 351
IL +V L + IVG +G+GK+TLL++++G +P +G+ ++ +
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV---------FYDGQDLA 518
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----GFGVSGDL-----------------A 389
LD + RRQLG G +SG + A
Sbjct: 519 GLD-----------------VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEA 561
Query: 390 LQFVG---------------------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ G +LSGGQ+ R+ AR + P L+ DE T+ LD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 429 ET 430
T
Sbjct: 622 RT 623
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 31/175 (17%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+++ V+ Y K + +V L T+E + ++G +G+GKTT LK+I +I PT+G
Sbjct: 1 MIEFENVSKRYG-NKKAVDDVNL--TIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGE 57
Query: 334 -------------RTVHRNLKFGYFSQHH-------VDQLDMNLRCVQLLEAAFPGKPQE 373
+ R + GY Q V + N+ V L + ++
Sbjct: 58 ILIDGEDISDLDPVELRRKI--GYVIQQIGLFPHLTVAE---NIATVPKLLGWDKERIKK 112
Query: 374 EYRRQLGGFGV-SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L G+ + A ++ LSGGQ+ RV AR A P L++DEP LD
Sbjct: 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 37/150 (24%), Positives = 63/150 (42%), Gaps = 30/150 (20%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I I+G NG GKTT +K++ G++ P G + + Y Q+ ++A
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQY--------------IKA 72
Query: 366 AFPGKPQEEYRRQLGGFGVSG-------------DLALQFVGSLSGGQKSRVAFARMCMA 412
+ G ++ F + + V LSGG+ RVA A C++
Sbjct: 73 DYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIA-ACLS 131
Query: 413 AP-NFLVLDEPTNHLDIETIEALGKAINKY 441
+ +LDEP+ +LD+E K I ++
Sbjct: 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRF 161
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 8e-09
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
IL+L+E+ Y G P + +C+G ++G NGAGKTT K++ G + T+G
Sbjct: 1937 ILRLNELTKVY-SGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995
Query: 334 RT------------VHRNLKFGYFSQHH-VDQLDMNLRCVQLLEAAFPGKPQEEYRR--- 377
T VH+N+ GY Q +D L + R L A G P EE +
Sbjct: 1996 ATVAGKSILTNISDVHQNM--GYCPQFDAIDDL-LTGREHLYLYARLRGVPAEEIEKVAN 2052
Query: 378 ---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q G + D + G+ SGG K +++ A + P ++LDEPT +D
Sbjct: 2053 WSIQSLGLSLYAD---RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 44/164 (26%), Positives = 63/164 (38%), Gaps = 36/164 (21%)
Query: 293 LTNVCLGATLES----RICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
L + L A I G +G+GKTTL+++I G+ P G
Sbjct: 9 LGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGI 68
Query: 334 -RTVHRNLKFGY-------FSQHHVDQLDMNLRC-VQLLEAAFPGKPQEEYRRQLGGFGV 384
+ + GY F V NLR ++ + E LG
Sbjct: 69 FLPPEKR-RIGYVFQEARLFPHLSVRG---NLRYGMKRARPSERRISFERVIELLG---- 120
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G L + G LSGG+K RVA R +++P L++DEP LD
Sbjct: 121 IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 32/182 (17%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++ V Y GK + N+ L + ++G +G+GKTT +K+I +I PT+G +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 337 -------------HRNLKF-----GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR- 377
R + + G F V++ N+ V L P+E+ R
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE---NIALVPKLL----KWPKEKIRER 113
Query: 378 -----QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
L G + A ++ LSGGQ+ RV AR A P L++DEP LD T +
Sbjct: 114 ADELLALVGLD-PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 433 AL 434
L
Sbjct: 173 QL 174
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV-DQLDMNLRCVQLLE 364
+ +VG +G GK+TLL+++ G+ +P+AG L G + + + +LL
Sbjct: 41 VAVVGRSGCGKSTLLRLLAGLETPSAGE------LLAGTAPLAEAREDTRLMFQDARLLP 94
Query: 365 ---------AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415
G+ ++ + L G++ D A ++ +LSGGQK RVA AR + P
Sbjct: 95 WKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPG 153
Query: 416 FLVLDEPTNHLDIET-IE 432
L+LDEP LD T IE
Sbjct: 154 LLLLDEPLGALDALTRIE 171
|
Length = 257 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 35/141 (24%), Positives = 54/141 (38%), Gaps = 24/141 (17%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------------KF---GYFS 346
++G NGAGKTTL+ +I G P G + KF F
Sbjct: 35 VLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94
Query: 347 QHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG-FGVSGDLALQFV--GSLSGGQKS 402
V + L++ L + + A+ + + E RR++ G + LS GQK
Sbjct: 95 NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQ 154
Query: 403 RVAFARMCMAAPNFLVLDEPT 423
+ + P L+LDEP
Sbjct: 155 WLEIGMLLAQDPKLLLLDEPV 175
|
Length = 249 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 56/182 (30%), Positives = 78/182 (42%), Gaps = 40/182 (21%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC--IVGDNGAGKTTLLKIIMGIISP 329
+S + L+ V+ Y K ++ L T+ S C ++G NGAGK+T+ ++I+G+ SP
Sbjct: 37 MSTVAIDLAGVSKSY-GDKAVVNG--LSFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93
Query: 330 TAGTRTV----------HRNLKFGYFSQHHVDQLDM------NL----RCVQL----LEA 365
AG TV + G Q D LD+ NL R + +EA
Sbjct: 94 DAGKITVLGVPVPARARLARARIGVVPQ--FDNLDLEFTVRENLLVFGRYFGMSTREIEA 151
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
P L F A V LSGG K R+ AR + P L+LDEPT
Sbjct: 152 VIP---------SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 426 LD 427
LD
Sbjct: 203 LD 204
|
Length = 340 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 54/191 (28%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC--IVGDNGAGKTTLLKIIMGIISPT 330
S + L V+ Y G ++ N L T+ C ++G NGAGK+T+ ++++G+ISP
Sbjct: 1 SNVAIDLVGVSKSY--GDKVVVND-LSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD 57
Query: 331 AGTRTV----------HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG---KPQEEYRR 377
G TV + G Q + +R L+ + G + E
Sbjct: 58 RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP 117
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---------- 427
L F A V LSGG K R+ AR + P L+LDEPT LD
Sbjct: 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWER 177
Query: 428 IETIEALGKAI 438
+ ++ A GK I
Sbjct: 178 LRSLLARGKTI 188
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 2e-08
Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 46/167 (27%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G P+L N+ L + I G G+GKT+LL +I+G + P+ G
Sbjct: 49 GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSW 108
Query: 334 ---RTVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
T+ N+ FG Y S QL+ ++ FP E+ LG G
Sbjct: 109 IMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDI-------TKFP----EKDNTVLGEGG 157
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
++ LSGGQ++R++ AR + +LD P +LD+ T
Sbjct: 158 IT----------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-08
Identities = 44/190 (23%), Positives = 71/190 (37%), Gaps = 46/190 (24%)
Query: 281 EVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT------ 333
V+ Y P P+L N+ ++ IVG G+GK++LL + ++ ++G+
Sbjct: 7 NVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGV 66
Query: 334 ----------R---------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368
R T+ NL F ++ ++L L V L E
Sbjct: 67 DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP--FGEYSDEELWQALERVGLKEFVES 124
Query: 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ + GG +LS GQ+ + AR + LVLDE T +D
Sbjct: 125 LPGGLDTVVEEGG------------ENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
Query: 429 ETIEALGKAI 438
ET + K I
Sbjct: 173 ETDALIQKTI 182
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%)
Query: 301 TLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFG---YFSQ------- 347
TL + I+G+NG+GK+TL K++ G+I PT+G + L FG Y SQ
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQ 94
Query: 348 ---------HHVDQ-LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLS 397
+ Q LD LR LE K E RQ+ G+ D A + L+
Sbjct: 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV---GLLPDHASYYPHMLA 151
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
GQK R+ AR + P ++ DE LD+
Sbjct: 152 PGQKQRLGLARALILRPKVIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 43/208 (20%), Positives = 72/208 (34%), Gaps = 58/208 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR-- 334
++L ++N Y L ++ L ++G +G GK+TLL+++ + G
Sbjct: 1 IELRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 335 ------------------------------------TVHRNLKFGYFSQHHVDQLDMNLR 358
+++ N+ +G + +++ R
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
+ L A E R LSGGQ+ R+ AR P L+
Sbjct: 120 VEEALRKA--ALWDEVKDRLHAL-------------GLSGGQQQRLCLARALANEPEVLL 164
Query: 419 LDEPTNHLDI---ETIEALGKAINK-YT 442
LDEPT+ LD IE L + K YT
Sbjct: 165 LDEPTSALDPISTAKIEELIAELKKEYT 192
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 40/150 (26%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNLKFGYFSQH-- 348
I+G +G+GK+TLL+ I +I PT+G R + R K Q
Sbjct: 54 VIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK-KISMVFQSFA 112
Query: 349 ---HVDQLDMNLRCVQLLEAAFP----GKPQEEYRR----QLGGFGVSGDLALQFVGSLS 397
H L+ AF G P+ E L G+ G ++ LS
Sbjct: 113 LLPHRTVLE---------NVAFGLEVQGVPRAEREERAAEALELVGLEGWEH-KYPDELS 162
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GG + RV AR P+ L++DE + LD
Sbjct: 163 GGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-08
Identities = 44/145 (30%), Positives = 62/145 (42%), Gaps = 21/145 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----------RNLKFGYFSQHHVDQLDM 355
I ++G +G GK+TLL +I G+ PT+G + R + F +S +
Sbjct: 14 ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRE 73
Query: 356 NLRCVQLLEAAFPGKPQEEYRR------QLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409
N+ ++ P + E R L G + D + G LSGG K RVA AR
Sbjct: 74 NIALA--VDRVLPDLSKSERRAIVEEHIALVGLTEAAD---KRPGQLSGGMKQRVAIARA 128
Query: 410 CMAAPNFLVLDEPTNHLDIETIEAL 434
P L+LDEP LD T L
Sbjct: 129 LSIRPKVLLLDEPFGALDALTRGNL 153
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 31/179 (17%)
Query: 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
+L+L ++ Y G+ +L + L + IVG +G+GK+TL+ I+ + PT+
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 332 GTRTVH---------------RNLKFGY-FSQHHVDQLDMNLRCVQLLE--AAFPGKPQE 373
GT V R FG+ F ++H L +L Q +E A + G ++
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFGFIFQRYH---LLSHLTAAQNVEVPAVYAGLERK 119
Query: 374 EYRRQ-----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ R L G+ + Q LSGGQ+ RV+ AR M ++ DEPT LD
Sbjct: 120 Q-RLLRAQELLQRLGLEDRVEYQ-PSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 41/184 (22%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
++L + F Y P P++ N L R+ +VG +G+GK+T+ K++ G+ P +G
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 334 ----------RTVHRNLKFGYFSQHHVDQLDMNL-------------RCV---QLLEAAF 367
R V N S VDQ D+ L + L+ A
Sbjct: 538 FDGIPREEIPREVLAN------SVAMVDQ-DIFLFEGTVRDNLTLWDPTIPDADLVRACK 590
Query: 368 PGKPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ + GG+ D L G+ LSGGQ+ R+ AR + P+ L+LDE T+ L
Sbjct: 591 DAAIHDVITSRPGGY----DAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646
Query: 427 DIET 430
D ET
Sbjct: 647 DPET 650
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 52/152 (34%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--- 364
++G +G GKTT+L+++ G+ PT G Q +D D+ R +Q +
Sbjct: 37 LLGPSGCGKTTVLRLVAGLEKPTEG--------------QIFIDGEDVTHRSIQQRDICM 82
Query: 365 -----AAFP---------------GKPQEEYRRQ---------LGGFGVSGDLALQFVGS 395
A FP G P+EE +++ L GF ++V
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFED------RYVDQ 136
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+SGGQ+ RVA AR + P L+ DEP ++LD
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 32/147 (21%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---RNLKFGYF 345
GK +L NV A I+G +GAGK+TLL + G + + V R L F
Sbjct: 21 GKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80
Query: 346 SQH--HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG---SLSGGQ 400
+ +V Q D+ + + E L F LSGG+
Sbjct: 81 RKIIGYVPQDDILHPTLTVRET------------------------LMFAAKLRGLSGGE 116
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RV+ A ++ P+ L LDEPT+ LD
Sbjct: 117 RKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 41/199 (20%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---- 332
++ + FE+ + +V A + IVG GAGKTTL+ ++ + PT G
Sbjct: 335 VEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394
Query: 333 ----TRTVHRN----------LKFGYFSQHHVDQLDMNLRCV---QLLEAAFPGKPQEEY 375
TV R G F++ + + + ++ EAA +
Sbjct: 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFI 454
Query: 376 RRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET- 430
++ G+ VG LSGG++ R+A AR + LVLDE T+ LD+ET
Sbjct: 455 LKRSNGY-------DTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507
Query: 431 ------IEALGKAINKYTF 443
I+AL K N+ TF
Sbjct: 508 ARVKNAIDALRK--NRTTF 524
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 5e-08
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 30/145 (20%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-------------TRTVHRNLKFGYFSQHHVDQLD 354
I+G NG GK+TLL+ + +++P G ++ V R + G +Q+ D
Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR--RIGLLAQNATTPGD 95
Query: 355 MNLRCVQLLEAA--FPGKP---------QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403
+ VQ L A +P +P +E + + G++ LA Q V +LSGGQ+ R
Sbjct: 96 IT---VQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQR 151
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDI 428
A + ++LDEPT LDI
Sbjct: 152 AWIAMVLAQETAIMLLDEPTTWLDI 176
|
Length = 265 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-08
Identities = 53/181 (29%), Positives = 79/181 (43%), Gaps = 43/181 (23%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
I+++ +++F Y G L + L S+ ++G NGAGK+TLL + GI P G
Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
Query: 334 ---RTVH-------RNLKFGYFSQHHVDQL-------DMNLRCVQLLEAAFPGKPQEEYR 376
R V+ R+ K G Q DQ+ D+ V + G ++E
Sbjct: 64 VMGREVNAENEKWVRS-KVGLVFQDPDDQVFSSTVWDDVAFGPVNM------GLDKDEVE 116
Query: 377 RQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
R++ AL+ V LS GQK RVA A + P+ +VLDEP +L
Sbjct: 117 RRVEE-------ALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYL 169
Query: 427 D 427
D
Sbjct: 170 D 170
|
Length = 274 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNLKFGYFSQH- 348
I+G +G+GK+T ++++ +I PTAG R V R K G Q
Sbjct: 22 FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK-KIGMVFQQF 80
Query: 349 ----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
H+ L N L + +E+ L G+ ++ LSGG + RV
Sbjct: 81 ALFPHMTILQ-NTSLGPELLGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRV 138
Query: 405 AFARMCMAAPNFLVLDEPTNHLD 427
AR A P+ L++DE + LD
Sbjct: 139 GLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 30/168 (17%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ-----------HHVD-- 351
++ +VG NG GK+TLL ++ IS G+ T N + + +Q + +D
Sbjct: 29 KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88
Query: 352 ----QLDMNLRCVQ-------------LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
QL+ L L+A + L G G S + + V
Sbjct: 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
SGG + R+ A+ + + L+LDEPTNHLD++ + L K + Y
Sbjct: 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ 196
|
Length = 638 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 8e-08
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 47/164 (28%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR--------------- 334
+P L+N+ L + S + IVG G GKT+L+ ++G + P +
Sbjct: 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSW 689
Query: 335 ----TVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
TV N+ FG Y V L +L LL PG E +G G
Sbjct: 690 IFNATVRDNILFGSPFDPERYERAIDVTALQHDL---DLL----PGGDLTE----IGERG 738
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
V ++SGGQK RV+ AR + + + D+P + LD
Sbjct: 739 V----------NISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
Length = 1622 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 52/262 (19%), Positives = 93/262 (35%), Gaps = 51/262 (19%)
Query: 211 REIEAQRMHREHVQKFIDTF------RYNANRASSVQSKIKQLERLPELKPIEKEVEVV- 263
R++ V + + R ++S + L P VE
Sbjct: 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSN-LVPGRGIVEYQD 449
Query: 264 --LKFPDTELLSPP-ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320
+KF + L++P + + ++FE G +L I G NG GK++L
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLL--------------ICGPNGCGKSSLF 495
Query: 321 KIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV--QLLEAAFPGKPQEEYRR- 377
+I+ + G T K Y Q M L + Q++ +P ++ RR
Sbjct: 496 RILGELWPVYGGRLTKPAKGKLFYVPQRPY----MTLGTLRDQII---YPDSSEDMKRRG 548
Query: 378 -------------QLGGF---GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
QL ++ LSGG+K R+A AR+ P F +LDE
Sbjct: 549 LSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDE 608
Query: 422 PTNHLDIETIEALGKAINKYTF 443
T+ + ++ + + ++
Sbjct: 609 CTSAVSVDVEGYMYRLCREFGI 630
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 40/149 (26%), Positives = 52/149 (34%), Gaps = 41/149 (27%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH----------------HVD 351
IVG NGAGKTT+++ + A T + N K G + +
Sbjct: 27 IVGQNGAGKTTIIEALK-----YALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENAN 81
Query: 352 QLDMNLR--CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS------R 403
+ L F Q E S L G SGG+K R
Sbjct: 82 GKKYTITRSLAILENVIF--CHQGE----------SNWPLLDMRGRCSGGEKVLASLIIR 129
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIE 432
+A A + L LDEPT +LD E IE
Sbjct: 130 LALAETFGSNCGILALDEPTTNLDEENIE 158
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 28/159 (17%)
Query: 308 IVGDNGAGKTTLLKIIMGIIS--PTAGTRT----------VHRNLKFGYF--SQHHVD-- 351
I+G NG+GK+TL IMG T G + G F Q+ V+
Sbjct: 35 IMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP 94
Query: 352 --------QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG-SLSGGQKS 402
+ MN + + +E + + G+ + ++V SGG+K
Sbjct: 95 GVTNSDFLRAAMN---ARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKK 151
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
R ++ + P +LDEP + LDI+ ++ + + IN
Sbjct: 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINAL 190
|
Length = 251 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 43/170 (25%), Positives = 66/170 (38%), Gaps = 26/170 (15%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHH 349
K L + L + ++G NGAGK+TLL I G + PT+G + S
Sbjct: 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGV-DVTKKSVAK 77
Query: 350 -------VDQLDMNLRCVQL------LEAAFPGKPQ-----------EEYRRQLGGFGVS 385
V Q + +L A GK + +R +L G+
Sbjct: 78 RANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLG 137
Query: 386 -GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
+ +G LSGGQ+ ++ + P L+LDE T LD +T E +
Sbjct: 138 LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187
|
Length = 263 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 49/148 (33%), Positives = 67/148 (45%), Gaps = 38/148 (25%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----HR----------------NLKFGY 344
R+ I+G +GAGK+TLL +I G ++P +G+ T+ H NL
Sbjct: 27 RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNL---- 82
Query: 345 FSQHHVDQ-----LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG 399
FS V Q L+ L+ L AA Q E + DL + G LSGG
Sbjct: 83 FSHLTVAQNIGLGLNPGLK----LNAA-----QREKLHAIARQMGIEDLLARLPGQLSGG 133
Query: 400 QKSRVAFARMCMAAPNFLVLDEPTNHLD 427
Q+ RVA AR + L+LDEP + LD
Sbjct: 134 QRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 24/141 (17%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP--------TAGTRTVH-----RNL-----KFGYFSQ 347
+ ++G +G GKTTLL+ I G + A H R L + F
Sbjct: 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93
Query: 348 HHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
V D + LR ++ +A E L G+ GD A LSGG + R+A
Sbjct: 94 LKVEDNVAFGLRAQKMPKADI----AERVADALKLVGL-GDAAAHLPAQLSGGMQQRIAI 148
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
AR P+ L+LDEP + LD
Sbjct: 149 ARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 51/177 (28%), Positives = 82/177 (46%), Gaps = 28/177 (15%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+QL+ +N Y + L ++ L + ++G +GAGK++LL+++ + P +GT +
Sbjct: 3 IQLNGINCFYGAHQ-ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 337 HRNLKFGYFSQHHVDQLDMNLR----------------CVQ--LLEAAFP--GKPQEEYR 376
N F FS+ D+ +LR VQ L+EA G +++
Sbjct: 62 AGN-HFD-FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 377 RQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
+ L + A ++ LSGGQ+ RVA AR M P L+ DEPT LD E
Sbjct: 120 ARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
Length = 242 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 40/181 (22%), Positives = 69/181 (38%), Gaps = 49/181 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--- 333
++L V + L ++ L + ++G +G GKTT L++I G+ PT+G
Sbjct: 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
Query: 334 ---------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
TV+ N+ FG V + +++ R ++ E
Sbjct: 60 GGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFG-LKLRKVPKDEIDERVREVAELL 118
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ +QL SGGQ+ RVA R + P ++DEP ++L
Sbjct: 119 QIEHLLDRKPKQL-----------------SGGQRQRVALGRAIVREPKVFLMDEPLSNL 161
Query: 427 D 427
D
Sbjct: 162 D 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 54/161 (33%), Positives = 75/161 (46%), Gaps = 36/161 (22%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL-------------KFGYFSQHHVDQL 353
++G +GAGK+TL++ I + PT+G V ++L + G QH
Sbjct: 36 VIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQH----- 90
Query: 354 DMNL---RCVQLLEAAFP----GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKS 402
NL R V A P G P+ E + + L G+S D A ++ LSGGQK
Sbjct: 91 -FNLLSSRTV-FDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQ 147
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
RVA AR + P L+ DE T+ LD T I L K IN+
Sbjct: 148 RVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR 188
|
Length = 343 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 45/201 (22%), Positives = 76/201 (37%), Gaps = 56/201 (27%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++ + + P ++E I I+G G+GKTT ++ + ++ P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLG-------- 380
T +++ + + + + + ++ L K +E RR++G
Sbjct: 63 T------IEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEY 116
Query: 381 ----------------GFGVSGDLALQ-------FVG-----------SLSGGQKSRVAF 406
GVS + A + VG LSGGQK RVA
Sbjct: 117 QLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVAL 176
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
A + P+FLV DEPT LD
Sbjct: 177 AGILAMEPDFLVFDEPTAGLD 197
|
Length = 305 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-07
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 37/188 (19%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L + E++F+Y +P+L + + + G NGAGKTTLLK+I G+++P G
Sbjct: 1 MLDVIELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI- 58
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-----KPQEEYRRQL--------GGF 382
F + + + C + F G P R G
Sbjct: 59 --------LFERQSIKK----DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAV 106
Query: 383 GVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
G++ +L F G LS GQK +VA R+ M+ +LDEP LD ++
Sbjct: 107 GIT-ELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLT 165
Query: 434 LGKAINKY 441
+ I ++
Sbjct: 166 IITKIQEH 173
|
Length = 200 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 31/147 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT-------RTVHRNLKFG-----YFSQHHVDQLD- 354
+VG NG GK+T LKI+ G + P G + + G YF++ +
Sbjct: 31 LVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFR-GSELQNYFTKLLEGDVKV 89
Query: 355 -MNLRCVQLLEAAFPGK------------PQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
+ + V L+ A GK +E QL V + + LSGG+
Sbjct: 90 IVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLD----RNIDQLSGGEL 145
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLDI 428
RVA A +F DEP+++LDI
Sbjct: 146 QRVAIAAALARDADFYFFDEPSSYLDI 172
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 2e-07
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 61/190 (32%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+++L ++ + GK +++N+ L + ++G +G GKTT+L++I G +P +G
Sbjct: 12 SPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70
Query: 334 ------------------------------RTVHRNLKFGYFSQHHVDQLDMN------L 357
TV N+ FG Q ++ L
Sbjct: 71 IMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK-TPAAEITPRVMEAL 129
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
R VQL E A KP + LSGGQ+ RVA AR + P L
Sbjct: 130 RMVQLEEFA-QRKPHQ----------------------LSGGQQQRVAIARAVVNKPKVL 166
Query: 418 VLDEPTNHLD 427
+LDE + LD
Sbjct: 167 LLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFSQHHVDQL--DMNLRCVQ 361
IVG +G+GK+TLL +I G +P +G ++ ++ + V L + NL
Sbjct: 26 ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHL 85
Query: 362 LLE-----AAFPGKPQEEYRRQ-----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+E PG RQ L G++G L + G LSGG++ RVA AR+ +
Sbjct: 86 TVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAG-LEKRLPGELSGGERQRVALARVLV 144
Query: 412 AAPNFLVLDEPTNHLD 427
L+LDEP LD
Sbjct: 145 RDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 53/184 (28%), Positives = 79/184 (42%), Gaps = 50/184 (27%)
Query: 281 EVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
+V Y P L +V + S + I+G G+GK+TLL+ + G++ PT+GT T+
Sbjct: 7 KVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI 66
Query: 337 ----------HRNLK---------FGYFSQHHVDQLDMNLRCVQLLEA------AF-P-- 368
++ LK F F +H QL E F P
Sbjct: 67 GERVITAGKKNKKLKPLRKKVGIVF-QFPEH------------QLFEETVEKDICFGPMN 113
Query: 369 -GKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
G +E+ +++ + G+ +L + LSGGQ RVA A + P LVLDEPT
Sbjct: 114 FGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPT 173
Query: 424 NHLD 427
LD
Sbjct: 174 AGLD 177
|
Length = 290 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 46/167 (27%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
P+L N+ + + G G+GK++LL +IMG + P+ G
Sbjct: 438 VTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSW 497
Query: 334 ---RTVHRNLKFG-------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
T+ N+ FG Y S QL+ ++ A FP K + LG G
Sbjct: 498 IMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDI-------ALFPEKD----KTVLGEGG 546
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
++ LSGGQ++R++ AR + +LD P HLD+ T
Sbjct: 547 IT----------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 56/210 (26%)
Query: 266 FPDTELLSPPIL----QLSEVNFEYV--PGKPILTNVCLGATLE--SRICIVGDNGAGKT 317
P T L+P L + +V+F Y P P+L L TL + +VG +G+GK+
Sbjct: 464 IPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKG--LTFTLHPGEVVALVGPSGSGKS 521
Query: 318 TLLKIIMGIISPTAGTRTV---------HRNL--KFGYFSQHHV--------------DQ 352
T+ ++ + PT G + H L + Q V
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD 581
Query: 353 LDMNLRCVQLLEAA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
+++ AA F + Y ++G G LSGGQK R+A
Sbjct: 582 TPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ----------LSGGQKQRIA 627
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALG 435
AR + P L+LDE T+ LD E + L
Sbjct: 628 IARALVRKPRVLILDEATSALDAECEQLLQ 657
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 3e-07
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 29/169 (17%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L V L A I I+G +G+GK+T L+ I + P+ G+ V+ ++ +
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 343 GYFSQHHVDQLDMNLRCV--------------QLLEAAFP--GKPQEEYR----RQLGGF 382
++ + L L V ++EA G ++E R + L
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431
G+ ++ LSGGQ+ RV+ AR P L+ DEPT+ LD E +
Sbjct: 140 GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
|
Length = 257 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 30/174 (17%)
Query: 282 VNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--- 337
V F Y +P L ++ L + +VG +G+GK+TL+ +I P +G +
Sbjct: 336 VTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395
Query: 338 ------RNLK--FGYFSQHHV---DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG----- 381
+L+ SQ V D + N+ + +A + E R L
Sbjct: 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQA-----DRAEIERALAAAYAQD 450
Query: 382 FGVSGDLALQF-VGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
F L L +G LSGGQ+ R+A AR + L+LDE T+ LD E+
Sbjct: 451 FVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNES 504
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 57/196 (29%), Positives = 84/196 (42%), Gaps = 54/196 (27%)
Query: 282 VNFEYVPG-----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
V+++Y K L +V L + I+G NG+GK+T+ K + ++ P+ G V
Sbjct: 10 VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69
Query: 337 H-------------RNLKFGYFSQHHVDQLDMNLRCVQLLE--AAF-P---GKPQEEYRR 377
RN K G Q+ +Q+ ++E AF P G P EE R
Sbjct: 70 DGLDTSDEENLWDIRN-KAGMVFQNPDNQI-----VATIVEEDVAFGPENLGIPPEEIRE 123
Query: 378 QLGGFGVSGDLALQFVGS----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++ D +L+ VG LSGGQK RVA A + P ++ DEPT LD
Sbjct: 124 RV-------DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD 176
Query: 428 -------IETIEALGK 436
+ TI+ L K
Sbjct: 177 PSGRREVVNTIKELNK 192
|
Length = 280 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-07
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 22/159 (13%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------------TRTV 336
ILT V L I ++G++G+GK+TLL I+ G+ ++G R
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 337 HRNLKFGYFSQHHVDQLDMN-LRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQ 391
R G+ Q + +N L V+L A G+ + R L G+ G
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVEL-PALLRGESSRQSRNGAKALLEQLGL-GKRLDH 142
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGG++ RVA AR P+ L DEPT +LD +T
Sbjct: 143 LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 4e-07
Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 41/179 (22%)
Query: 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--------- 329
+ +V+FE PG+ + IVG++G+GK+TL +MG++
Sbjct: 25 VRDVSFEVEPGE--------------ILGIVGESGSGKSTLALALMGLLPEGGRITSGEV 70
Query: 330 ----------TAGTRTVHRNLKFGYFSQHHVDQLD--MNLR--CVQLLEAAFPGKPQEEY 375
+ R + Q + L+ M + + L G E
Sbjct: 71 ILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEAR 130
Query: 376 RRQLGGFGVSG----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+R + G + ++ LSGG + RV A P L+ DEPT LD+ T
Sbjct: 131 KRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
|
Length = 539 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 4e-07
Identities = 52/190 (27%), Positives = 82/190 (43%), Gaps = 38/190 (20%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P+ L VN PG+ + A L G+NGAGK+TL+K++ GI PT GT
Sbjct: 16 GPVHALKSVNLTVYPGE-------IHALL-------GENGAGKSTLMKVLSGIHEPTKGT 61
Query: 334 RTV---------HR---NLKFGYFSQHH--VDQLDM--NLRCVQLLEAAFPGKPQEEYRR 377
T+ H+ L G Q +D+L + NL + L G ++R
Sbjct: 62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 378 Q-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
L G+ DL + V +LS K + A+ M +++DEPT+ L +
Sbjct: 122 MRVRAAMMLLRVGLKVDLD-EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKE 180
Query: 431 IEALGKAINK 440
++ L +N+
Sbjct: 181 VDYLFLIMNQ 190
|
Length = 510 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 36/186 (19%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISP 329
P+LQ+S ++ Y GK C + + + IVG++G+GK+TLL + G ++P
Sbjct: 1 KPLLQVSGLSKSYGGGKG-----CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55
Query: 330 TAGTRTV-----------------HRNL---KFGYFSQHHVDQLDMNLRC-------VQL 362
GT T R L ++G+ Q+ D L M + +
Sbjct: 56 DHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA 115
Query: 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
+ A G + + L + + SGG + R+ AR + P + +DEP
Sbjct: 116 IGARHYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEP 175
Query: 423 TNHLDI 428
T LD+
Sbjct: 176 TGGLDV 181
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 30/163 (18%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------ 337
K IL ++ L ++G NG GK+TLLK +++P +GT +
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74
Query: 338 -RNLKFGYFSQHHVDQLDMNLRCVQLLE----------AAFPGKPQEEYRRQLGGFGVSG 386
R L QHH+ + +R +L+ + + + ++
Sbjct: 75 ARRLAL--LPQHHLTPEGITVR--ELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN- 129
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLV-LDEPTNHLDI 428
LA + + LSGGQ+ R AF M +A +V LDEPT +LDI
Sbjct: 130 HLADRRLTDLSGGQRQR-AFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-07
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 56/199 (28%)
Query: 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
I+++ + F+Y K L +V + I+G NG+GK+T +++I G++ +G
Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63
Query: 334 RTVHRNL-----------KFGYFSQHHVDQL------DMNLRCVQLLEAAF----PGKPQ 372
+ +L K G Q+ +Q D + AF G P
Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED---------DVAFGLENKGIPH 114
Query: 373 EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422
EE + ++ + AL+ VG LSGGQK RVA A P ++LDE
Sbjct: 115 EEMKERV-------NEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEA 167
Query: 423 TNHLD-------IETIEAL 434
T+ LD I+TI+ +
Sbjct: 168 TSMLDPEGRLELIKTIKGI 186
|
Length = 279 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 39/196 (19%)
Query: 276 ILQLSEVN-FEYVPGKPI--LTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTA 331
+++LS + + K I L NV L +I ++G +GAGK+TL++ + + PT+
Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVP-AGQIYGVIGASGAGKSTLIRCVNLLERPTS 59
Query: 332 GTRTV--------------HRNLKFGYFSQHHVDQLDMNLRCVQLL--EAAFP----GKP 371
G+ V + G QH NL + + A P P
Sbjct: 60 GSVIVDGQDLTTLSNSELTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTP 113
Query: 372 QEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++E +R+ L G+ GD + +LSGGQK RVA AR + P L+ DE T+ LD
Sbjct: 114 KDEIKRKVTELLALVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
Query: 428 IET---IEALGKAINK 440
T I L K IN+
Sbjct: 173 PATTQSILELLKEINR 188
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 43/171 (25%)
Query: 290 KPILTNVCLGATLESRICI--VGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQ 347
P+LTNV L ++E + +G +G GK+TL ++++G+ P GT F
Sbjct: 24 APVLTNVSL--SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRG 72
Query: 348 HHVDQLDMN-----LRCVQLLEAAFP-------------GKPQEEY------RRQ----- 378
+ QLD R VQL+ P G+P ++
Sbjct: 73 QDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE 132
Query: 379 -LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G+ + A + LSGGQ R+ AR P +VLDE ++LD+
Sbjct: 133 LLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDM 183
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 54/174 (31%), Positives = 78/174 (44%), Gaps = 47/174 (27%)
Query: 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331
L P +L L +V+ GK LT V LGAT G+GK+TLL+ ++ +
Sbjct: 670 LEPKVL-LRDVSVSVPRGK--LT-VVLGAT-----------GSGKSTLLQSLLSQFEISE 714
Query: 332 G------------------TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373
G TV N+ F F + +L +R QL EA
Sbjct: 715 GRVWAERSIAYVPQQAWIMNATVRGNILF--FDEEDAARLADAVRVSQL-EADL------ 765
Query: 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
QLGG G+ ++ + V +LSGGQK+RV+ AR A + +LD+P + LD
Sbjct: 766 ---AQLGG-GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 64/159 (40%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG-------------------------------TR-- 334
I G +GAGKT+L+ I G+ P G R
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLF 88
Query: 335 ---TVHRNLKFGY--FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA 389
V NL++G D++ V LL G+ L
Sbjct: 89 PHYKVRGNLRYGMAKSMVAQFDKI------VALL-------------------GI-EPLL 122
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
++ GSLSGG+K RVA R + AP L++DEP LD+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
Length = 352 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 40/215 (18%)
Query: 235 NRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI-LQLSEVNFEYVPGKPIL 293
N S V + L+R+ EL + E ++ + P + +P I ++ +++ KP L
Sbjct: 576 NLLSQVVNANVSLQRIEEL--LLSEERILAQNPPLQPGAPAISIKNGYFSWDSKTSKPTL 633
Query: 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-------------------R 334
+++ L + S + IVG G GKT+L+ ++G +S +
Sbjct: 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693
Query: 335 TVHRNLKFG--YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF 392
TV N+ FG + S+ + +D+ +Q PG+ E +G GV
Sbjct: 694 TVRENILFGSDFESERYWRAIDVT--ALQHDLDLLPGRDLTE----IGERGV-------- 739
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
++SGGQK RV+ AR + + + D+P + LD
Sbjct: 740 --NISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
Length = 1495 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 42/147 (28%), Positives = 60/147 (40%), Gaps = 29/147 (19%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT--RTVHRNLKFGYFS----QHHVDQL-DMNLRCV 360
I+G NG GK+T LKI+ G + P G + F Q++ +L + LR V
Sbjct: 105 ILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAV 164
Query: 361 Q------LLEAAFPGKPQE------------EYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
L+ GK E E +LG V + V LSGG+
Sbjct: 165 HKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLD----RDVSELSGGELQ 220
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIE 429
RVA A + + DEP+++LDI
Sbjct: 221 RVAIAAALLRDADVYFFDEPSSYLDIR 247
|
Length = 591 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 44/195 (22%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGIISPTA 331
I++ V F Y P +P T V + +VG +G+GK+T++ ++ P
Sbjct: 11 IVKFQNVTFAY-PTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 332 GTRTV---------HRNL--KFGYFSQHHV-------DQLDMNLRCVQL---LEAA---- 366
G + H+ L K Q V D + L+ EAA
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAH 128
Query: 367 ---FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423
F + Y ++G G LSGGQK RVA AR + P L+LDE T
Sbjct: 129 AHSFISELASGYDTEVGEKG----------SQLSGGQKQRVAIARALIRNPQVLILDEAT 178
Query: 424 NHLDIETIEALGKAI 438
+ LD E+ + + +A+
Sbjct: 179 SALDAESEQQVQQAL 193
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-07
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 30/157 (19%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHVDQLDM 355
++ ++G +G+GK+T+L+I+M + G V RN + H+ Q+
Sbjct: 28 KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRN 87
Query: 356 NLRCVQLLEAAFP----------------GKPQEEYRRQ----LGGFGVSGDLALQFVGS 395
+ V FP G + E ++ L G+ D A
Sbjct: 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-ADKADHMPAQ 146
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432
LSGGQ+ RVA AR P ++ DE T+ LD E +
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 58/214 (27%), Positives = 86/214 (40%), Gaps = 44/214 (20%)
Query: 250 LPELKPIEKEVE--VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307
L P+ E E +L L P +NF G RI
Sbjct: 342 LASNDPVTIEAEDLEILSPDGKTLAGP-------LNFTLPAG--------------QRIA 380
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVH----RNLKFGYFSQH--HVDQLDMNLRCVQ 361
+VG +GAGKT+LL ++G + P G+ ++ R L + +H V Q + L
Sbjct: 381 LVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQ-NPQLPHGT 438
Query: 362 LLEAAFPGKPQ---EEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFAR 408
L + G P E+ ++ L VS L L G LS GQ R+A AR
Sbjct: 439 LRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALAR 498
Query: 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442
+ L+LDEPT LD + + + +A+N +
Sbjct: 499 ALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS 532
|
Length = 588 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 18/141 (12%)
Query: 303 ESRI-CIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVHRNL-----KFGYFSQHHVD 351
E++I +G NGAGKTT L I+ G++ PT+GT + + NL G QH++
Sbjct: 955 ENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAF 406
+ + L A G+ EE QL + D L LSGG + +++
Sbjct: 1015 FHHLTVAEHILFYAQLKGRSWEE--AQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSV 1072
Query: 407 ARMCMAAPNFLVLDEPTNHLD 427
A + +VLDEPT+ +D
Sbjct: 1073 AIAFVGDAKVVVLDEPTSGVD 1093
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 42/147 (28%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL---E 364
++G +G GKTTLL+++ G P +G+ V + +LR + ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIM---------LDGEDVTNVPPHLRHINMVFQSY 51
Query: 365 AAFP---------------GKPQEEYRR---------QLGGFGVSGDLALQFVGSLSGGQ 400
A FP P+ E + QL F LSGGQ
Sbjct: 52 ALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADR------KPHQLSGGQ 105
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RVA AR + P L+LDEP + LD
Sbjct: 106 QQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 47/168 (27%), Positives = 62/168 (36%), Gaps = 39/168 (23%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH------------- 337
P+L NV L + + G +GAGK+TLLK + P +G V
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 338 ------RNLKFGYFSQHHVDQLDMNLRCV-----------QLLEAAFP-GKPQEEYRRQL 379
R GY SQ LR + LLE P + R L
Sbjct: 82 REVLEVRRKTIGYVSQF--------LRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ L + SGG++ RV AR +A L+LDEPT LD
Sbjct: 134 ARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLD 181
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 39/156 (25%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---- 343
PIL + + ++G G+G +TLLK + V ++ +
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS---VEGDIHYNGIPY 74
Query: 344 ------------YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
Y S+ V + +R + L+ A R G +
Sbjct: 75 KEFAEKYPGEIIYVSEEDVHFPTLTVR--ETLDFA---------LRCKGN---------E 114
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
FV +SGG++ RV+ A ++ + L D T LD
Sbjct: 115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 29/184 (15%)
Query: 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG 343
+ Y+ K IL ++ + S I+G +G+GK+TLLK++ +I V + K
Sbjct: 17 YLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKV--DGKVL 74
Query: 344 YFSQH--HVDQLDMNLRCVQLLEA-------------AFPGKPQ------------EEYR 376
YF + +D + + + + A+P K EE
Sbjct: 75 YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECL 134
Query: 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
R++G + D LSGGQ+ R+ AR P L++DEPT+ +DI +A+ K
Sbjct: 135 RKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194
Query: 437 AINK 440
I +
Sbjct: 195 LITE 198
|
Length = 257 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 51/179 (28%), Positives = 75/179 (41%), Gaps = 47/179 (26%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L L +V F Y + T+ + + I+G +GAGK+TLL +I G +P +G
Sbjct: 2 LALDDVRFSYGH-----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 335 TVH--------------------RNLKFGYFSQHHVDQ-----LDMNLRCVQLLEAAFPG 369
++ NL F+ V Q L L+ L A
Sbjct: 57 LINGVDHTASPPAERPVSMLFQENNL----FAHLTVAQNIGLGLSPGLK----LNAE--- 105
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN-FLVLDEPTNHLD 427
+E+ G++G L + G LSGGQ+ RVA AR C+ L+LDEP + LD
Sbjct: 106 -QREKVEAAAAQVGLAGFLK-RLPGELSGGQRQRVALAR-CLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-06
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 286 YVPGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341
P K IL ++ L GA +I ++G NGAGK+TLL+I+ G+ G +K
Sbjct: 16 VPPKKQILKDISLSFFPGA----KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIK 71
Query: 342 FGYFSQ 347
GY Q
Sbjct: 72 VGYLPQ 77
|
Length = 556 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 18/156 (11%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----------HR 338
G+ ++ +V L + ++G NGAGKTT +++GI+ AG + H
Sbjct: 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHA 74
Query: 339 NLK--FGYFSQH-----HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ 391
+ GY Q + D + +Q+ + + ++ + F + L
Sbjct: 75 RARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDS 133
Query: 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGG++ RV AR A P F++LDEP +D
Sbjct: 134 MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 27/163 (16%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
P+L NV +I IVG GAGK+TL+ + + G +
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI--------------EI 67
Query: 351 DQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFGVSGDL----ALQFVGS---LS 397
D +D++ ++ L ++ PQ+ R L F D AL+ LS
Sbjct: 68 DGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALRVSEGGLNLS 127
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GQ+ + AR + P LVLDE T +D T + K I +
Sbjct: 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 47/154 (30%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFG-------------YFSQHHVDQLDM 355
G+NGAGK+TLLKI+ G P AG+ + + ++F Y H V ++ +
Sbjct: 37 GENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV 96
Query: 356 --NLRCVQLLEAAFPGKP--------QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405
NL QL P K E R QL GV D + LS GQ+ V
Sbjct: 97 AENLYLGQL-----PHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-LKYLSIGQRQMVE 150
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
A+ + DEPT+ L IE L + I
Sbjct: 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
|
Length = 501 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-06
Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-----RTVHR-------NLKFGYFSQHHVDQL 353
+ I G G G+T L + + G+ P +G + V R Y
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVP------- 81
Query: 354 DMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
E+ +R+ + V+ ++AL + LSGG + +V AR
Sbjct: 82 -------------------EDRKREGLVLDLSVAENIALSSL--LSGGNQQKVVLARWLA 120
Query: 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440
P L+LDEPT +D+ + + I +
Sbjct: 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE 149
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 25/141 (17%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHR--NL----KF---GYFSQ 347
I+G NGAGKTT++ +I G P G+ H+ KF F
Sbjct: 32 VIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91
Query: 348 HHV-DQLDMNL-RCVQLLEAAFPGKPQEEYRR---QLGGFGVSGDLALQFVGSLSGGQKS 402
V + L++ L R + + F EE R L G+ D A + G LS GQK
Sbjct: 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-ADEADRLAGLLSHGQKQ 150
Query: 403 RVAFARMCMAAPNFLVLDEPT 423
+ + M P L+LDEP
Sbjct: 151 WLEIGMLLMQDPKLLLLDEPV 171
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 37/136 (27%), Positives = 48/136 (35%), Gaps = 46/136 (33%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG NG GKTT +KI+ G + P D+ D
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDN-----------------DEWDGITPVY----- 65
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
KPQ LSGG+ RVA A + F + DEP+ +
Sbjct: 66 ----KPQYI--------------------DLSGGELQRVAIAAALLRNATFYLFDEPSAY 101
Query: 426 LDIETIEALGKAINKY 441
LDIE +AI +
Sbjct: 102 LDIEQRLNAARAIRRL 117
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 3e-06
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 24/174 (13%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
GK +L V +G + ++G G+GKTT L+ + + +G R L G +
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 349 HVDQLDMNLRCVQLLEAA--FPGK---------------PQEEYR-------RQLGGFGV 384
+ D L+ R L + FP P++E+R ++G +
Sbjct: 93 YRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
D LSGGQ+ + AR P L+LDEPT+ LD T E + + I
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFI 206
|
Length = 276 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-06
Identities = 35/129 (27%), Positives = 44/129 (34%), Gaps = 34/129 (26%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I IVG G+GKTTL + + + P G Y
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGG--------GVIYID------------------- 37
Query: 366 AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
EE QL V G S SG + R+A A P+ L+LDE T+
Sbjct: 38 --GEDILEEVLDQLLLIIVGGK-----KASGSGELRLRLALALARKLKPDVLILDEITSL 90
Query: 426 LDIETIEAL 434
LD E L
Sbjct: 91 LDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 42/151 (27%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRNL------KFGY 344
I+G +G+GK+TL++++ +I PT G R + R F
Sbjct: 58 VIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117
Query: 345 FSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRR----QLGGFGVSGDLALQFVGSL 396
V L AF G P+ E L G+ G A ++ L
Sbjct: 118 LPHRTV-----------LENVAFGLEVQGVPKAEREERALEALELVGLEG-YADKYPNEL 165
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SGG + RV AR P+ L++DE + LD
Sbjct: 166 SGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 45/156 (28%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTR--TVHRNLKFGYFSQHHVDQLDM-NLRCV--QL 362
++G NGAGK+TLLK + G ++ R V ++ +D + LR V Q
Sbjct: 32 LLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91
Query: 363 LEAAFPGKPQE-------EYRRQLGGFGV-SGDLALQF-------------VGSLSGGQK 401
+ AF +E + R+ G G++A Q V +LSGG+
Sbjct: 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGEL 151
Query: 402 SRVAFARM---------CMAAPNFLVLDEPTNHLDI 428
+RV FAR+ P +L+LDEPT LD+
Sbjct: 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKF 342
+L V L A I I+G +G+GK+T L+ I + P+AG+ V+ ++ +
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 343 GYFSQHHVDQLDMNLRCV--------------QLLEAAFP--GKPQEEYRRQ----LGGF 382
+ + +L L V ++EA G + E + L
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
G++ + A + LSGGQ+ RVA AR P ++ DEPT+ LD E + + K +
Sbjct: 141 GIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197
|
Length = 256 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 48/169 (28%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--------------- 333
G+ + +V L ++G +G GK+TLL+++ G PTAG
Sbjct: 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ 90
Query: 334 ---------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378
TV +N+ FG Q + + ++ R ++L QE +R+
Sbjct: 91 RPINMMFQSYALFPHMTVEQNIAFG-LKQDKLPKAEIASRVNEMLGLV---HMQEFAKRK 146
Query: 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ RVA AR P L+LDEP LD
Sbjct: 147 --------------PHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 37/180 (20%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRIC-IVGDNGAGKTTLLKIIMGIISPTAGTR 334
L V+F VPG+ +L + L ++ ++G NG+GK+TLLK++ P+ G
Sbjct: 11 TFALRNVSFR-VPGRTLLHPLSLTFPA-GKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI 68
Query: 335 TVHRNL-----------KFGYFSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGF 382
+ K Y Q M +R +L+ +P + LG F
Sbjct: 69 LLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVR--ELVAIGRYP------WHGALGRF 120
Query: 383 GVSG--------------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G + LA + V SLSGG++ R A + L+LDEPT+ LDI
Sbjct: 121 GAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 37/150 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG--TRTVHRNLKFGYFS----QHHVDQL-DMNLRCV 360
I+G NG GKTT +KI+ G + P G + F Q++ +L + ++ V
Sbjct: 104 ILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVV 163
Query: 361 QLLEAAFPGKPQ--EEYRRQLGG-----------FGVSGDLALQF---------VGSLSG 398
KPQ + + G G ++ + + LSG
Sbjct: 164 H--------KPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSG 215
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
G+ RVA A + +F DEPT++LDI
Sbjct: 216 GELQRVAIAAALLRDADFYFFDEPTSYLDI 245
|
Length = 590 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 51/163 (31%), Positives = 71/163 (43%), Gaps = 38/163 (23%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-------HRNLKFGYFSQHHVDQLDMNLR 358
+ I+G +G+GKTTLL+ I + P AGT V R+L + + QL ++
Sbjct: 32 VAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ---QKGLIRQLRQHVG 88
Query: 359 CVQLLEAAFP----------------GKPQEEY----RRQLGGFGVSGDLALQFVGSLSG 398
V FP G+P+EE R L G++G + LSG
Sbjct: 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-ETSYPRRLSG 147
Query: 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIE-------TIEAL 434
GQ+ RVA AR P ++ DEPT+ LD E TI L
Sbjct: 148 GQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190
|
Length = 250 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 33/166 (19%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVH---RNLKFG 343
K +L NV A + ++G +GAGKTTL+ + +G+ ++ + K
Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEM 97
Query: 344 YFSQHHVDQLDMNLRCVQLLEA-------------AFPGKPQ--EEYRRQLG-------G 381
+V Q D+ + + + E K + +E + LG
Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTR 157
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GV G V LSGG++ R+AFA + P L DEPT+ LD
Sbjct: 158 IGVPGR-----VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 35/160 (21%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTV---------------HRNLKFGYFSQHHVDQ 352
+VG NGAGK+TLL + G++ P +G+ HR Y SQ
Sbjct: 27 LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHR----AYLSQQQTPP 81
Query: 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-----FVGSLSGGQKSRVAFA 407
M + Q L P K + E V+ L L V LSGG+ RV A
Sbjct: 82 FAMPV--FQYLTLHQPDKTRTEAVASALNE-VAEALGLDDKLGRSVNQLSGGEWQRVRLA 138
Query: 408 RMCM-----AAPN--FLVLDEPTNHLDIETIEALGKAINK 440
+ + P L+LDEP N LD+ AL + +++
Sbjct: 139 AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE 178
|
Length = 248 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-06
Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 44/193 (22%)
Query: 271 LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESR----ICIVGDNGAGKTTLLKIIMGI 326
++ P+L +S ++ Y PGK C + + + IVG++G+GKTTLLK I G
Sbjct: 1 MMDKPLLSVSGLSKLYGPGKG-----CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR 55
Query: 327 ISPTAGTRTVH-----------------RNL---KFGYFSQHHVDQLDMNLRCVQLLEAA 366
++P AGT T R L ++G+ Q+ D L M +
Sbjct: 56 LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSA----GGN 111
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFV-----------GSLSGGQKSRVAFARMCMAAPN 415
+ R G L+ V + SGG + R+ AR + P
Sbjct: 112 IGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171
Query: 416 FLVLDEPTNHLDI 428
+ +DEPT LD+
Sbjct: 172 LVFMDEPTGGLDV 184
|
Length = 258 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198
L L+ + TL+ VSHDR F+ S+ T I + + + G YE +
Sbjct: 477 LNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEY 523
|
Length = 530 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 28/155 (18%)
Query: 313 GAGKTTLLKIIMGIISPTAGT-----RTVHR-------NLKFGYFSQHHVDQ---LDMNL 357
GAG+T L + + G ++G + V Y + + LDM++
Sbjct: 295 GAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSI 354
Query: 358 R---CVQLLEAAFPGKP------QEEYRRQLGGFGVSGDLALQFVGSLSGG--QKSRVAF 406
+ L + R + + Q +G+LSGG QK V
Sbjct: 355 AENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK--VVL 412
Query: 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
AR P L+LDEPT +D+ + + I +
Sbjct: 413 ARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447
|
Length = 500 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 7e-06
Identities = 22/43 (51%), Positives = 25/43 (58%)
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
A +F LSGGQ+ RVA AR M P L+ DEPT LD E
Sbjct: 133 PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
|
Length = 242 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 7e-06
Identities = 46/181 (25%), Positives = 67/181 (37%), Gaps = 27/181 (14%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+L +VN Y K + NV L + ++G +G GKTT L+ I + T G
Sbjct: 1 MTLLLSAQDVNI-YYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG 59
Query: 333 TRTVHRNLKFGY-FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----- 386
R R L G VD + M R + + P + + G ++G
Sbjct: 60 ARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRD 119
Query: 387 --------------------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
D LSGGQ+ R+ AR P L++DEPT+ L
Sbjct: 120 HLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSAL 179
Query: 427 D 427
D
Sbjct: 180 D 180
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
Q +G LSGG + +VA AR M P L+LDEPT +D+ + + + IN++
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441
|
Length = 501 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 47/149 (31%), Positives = 61/149 (40%), Gaps = 21/149 (14%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367
++G NGAGK+TL+KII GI+ P +GT + N + QL + L V F
Sbjct: 42 LLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNP-CARLTPAKAHQLGIYL--VPQEPLLF 98
Query: 368 PG------------KPQEEYRR---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
P K Q ++ L G DL GSL + V R M
Sbjct: 99 PNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSS-AGSLEVADRQIVEILRGLMR 157
Query: 413 APNFLVLDEPTNHLD-IETIEALGKAINK 440
L+LDEPT L ET E L I +
Sbjct: 158 DSRILILDEPTASLTPAET-ERLFSRIRE 185
|
Length = 510 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 8e-06
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF-----GYFSQ 347
L ++ L A I +VG NG+GK+TL II G +SPT G + + G Q
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 348 -HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406
++ ++ + C+ F K + ++ F G+ Q V S G ++++ F
Sbjct: 100 LTGIENIEFKMLCM-----GFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGF 154
Query: 407 ARMCMAAPNFLVLDE 421
+ P+ LV+DE
Sbjct: 155 SINITVNPDILVIDE 169
|
Length = 264 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 46/196 (23%)
Query: 106 ELEAIEADKAPARASVILA-------------GLGFTPEMQKRATKHFSGG--------- 143
+LE + AD++P + LA G GF + T+ FSGG
Sbjct: 384 QLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLAL 443
Query: 144 --WRKMAIIWLE---NYLQ------------NWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186
W++ ++ L+ N+L ++ L+VVSHDRH L S D++ +H
Sbjct: 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDG 503
Query: 187 RIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREH-VQKFIDTFRYNANRASSVQSKIK 245
+++ + G+ E + + ++ K + + EA + + + Q D R A + Q K
Sbjct: 504 KVEPFDGDLEDYQQWLSDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRK 563
Query: 246 QLERLPELKPIEKEVE 261
++ RL EKE+E
Sbjct: 564 EIARL------EKEME 573
|
Length = 638 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 47/192 (24%)
Query: 271 LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
++ + +++V + G L + S +VG NG+GK+TL K +MG +
Sbjct: 1 MMQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA 60
Query: 331 AGT---------RTVHRNLKFGYFSQHH---------VDQLDMNLRC------------- 359
+G + + +NL Y Q V+ + M R
Sbjct: 61 SGKISILGQPTRQALQKNL-VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRD 119
Query: 360 VQLLEAAFPGKPQEEYR-RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
Q++ AA E+R RQ +G LSGGQK RV AR ++
Sbjct: 120 RQIVTAALARVDMVEFRHRQ--------------IGELSGGQKKRVFLARAIAQQGQVIL 165
Query: 419 LDEPTNHLDIET 430
LDEP +D++T
Sbjct: 166 LDEPFTGVDVKT 177
|
Length = 272 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 40/156 (25%), Positives = 60/156 (38%), Gaps = 34/156 (21%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN---------L 357
I+G++G+GK+TL+ G+I GT V ++ G +H + L
Sbjct: 56 FIIGNSGSGKSTLVTHFNGLIKSKYGTIQV-GDIYIGDKKNNHELITNPYSKKIKNFKEL 114
Query: 358 RCVQLLEAAFP--------------------GKPQEEYRRQ----LGGFGVSGDLALQFV 393
R + FP G + E ++ L G+ +
Sbjct: 115 RRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
LSGGQK RVA A + P L+ DEPT LD +
Sbjct: 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK 210
|
Length = 320 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 44/183 (24%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 287 VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRT------- 335
V K IL V L I+G NG+GK+TL K I G + T+GT
Sbjct: 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV--TSGTILFKGQDLL 67
Query: 336 ---VHRNLKFGYF--SQHHVD----QLDMNLRCVQLLEAAFPGKP-------QEEYRRQL 379
+ G F Q+ + LR + G+ + + +L
Sbjct: 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKL 127
Query: 380 GGFGVSGDLALQFVG-SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
G+ + + V SGG+K R +M + P +LDE + LDI+ ++ + + I
Sbjct: 128 ALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 439 NKY 441
N+
Sbjct: 188 NRL 190
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 48/213 (22%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 251 PELKPIEKEVEV---VLKFPDTELLSPPILQLSE--VNFEYVPGKPILTNVCLGATLESR 305
+L+ K V D + L + E + V + +L N+ L
Sbjct: 352 EKLEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDV 411
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---YFSQHHVDQLDMNLRCVQL 362
+ +VG +GAGKTTLL++I+G G Y ++ N +
Sbjct: 412 VAVVGQSGAGKTTLLRMILGAQ------------KGRGEEKYRPDSGKVEVPKNTVSALI 459
Query: 363 ---LEAAFPGKP-QEEYRRQLGGFGVSGDL--------ALQFV---GSLSGGQKSRVAFA 407
E F E R + G + ++ A+ + LS GQK R A
Sbjct: 460 PGEYEPEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLA 519
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
++ PN L++DE HLD T + + I++
Sbjct: 520 KLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552
|
Length = 593 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+LQL ++ + PG L+ L + +VG+NGAGK+T++K++ GI + AG+
Sbjct: 3 ALLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS 60
|
Length = 501 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 21/141 (14%)
Query: 308 IVGDNGAGKTTLLKII---------------MGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
I+G +G+GK+TLL+ I + + P R + + F Q ++
Sbjct: 32 IIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM-VFQQFYLFP 90
Query: 353 LDMNLRCVQLLEAAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408
L V G +EE +Q L G++ + A + LSGGQ+ RVA AR
Sbjct: 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIAR 149
Query: 409 MCMAAPNFLVLDEPTNHLDIE 429
P ++ DEPT+ LD E
Sbjct: 150 ALAVKPKLMLFDEPTSALDPE 170
|
Length = 240 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 30/155 (19%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIIS--PTAGT------RTVHRNLKF-----------GYFS 346
+ ++G +G+GK+TLL+ + G+I+ +AG+ RTV R + GY
Sbjct: 33 VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92
Query: 347 QHH--VDQLDM-------NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG--DLALQFVGS 395
Q V++L + L F +E+ +R L G A Q V +
Sbjct: 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST 152
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGGQ+ RVA AR M ++ DEP LD E+
Sbjct: 153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPES 187
|
Length = 262 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 40/156 (25%), Positives = 62/156 (39%), Gaps = 32/156 (20%)
Query: 302 LESRICIV-GDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHHVDQL 353
L S I + G NG GK++LL++I GI+ P++G Y + +L
Sbjct: 24 LPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83
Query: 354 DM----NLR-------CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
+M NL+ + L AA ++ DL + SLS G +
Sbjct: 84 EMTVFENLKFWSEIYNSAETLYAAI-----HYFKLH--------DLLDEKCYSLSSGMQK 130
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
VA AR+ + +LDE +L E + L I
Sbjct: 131 IVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 51/200 (25%)
Query: 276 ILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
I++ V+F Y K P L ++ S ++G NG+GK+T+ K+I G++ P
Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 335 TVHRNLKFGYFSQHHVDQLDMNLRCV----------------QLLEA------AF----P 368
S+ VD + + + V Q + A AF
Sbjct: 65 -----------SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR 113
Query: 369 GKPQEEY----RRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARMCMAAPNFLVLD 420
P+ E R L G+ L ++ S LSGGQK RVA A + P ++LD
Sbjct: 114 AVPRPEMIKIVRDVLADVGM-----LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD 168
Query: 421 EPTNHLDIETIEALGKAINK 440
E T+ LD E + K I K
Sbjct: 169 ESTSMLDPAGKEQILKLIRK 188
|
Length = 282 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 46/172 (26%), Positives = 74/172 (43%), Gaps = 23/172 (13%)
Query: 276 ILQLSEVNFEYVPGKPI--LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI------I 327
IL++ + F+Y + L V T + I+G NG+GK+T ++I G+
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 328 SPTAGTRTVHRNL-----KFGYFSQHHVDQLDMNLRCVQLLEAAF----PGKPQEEYRRQ 378
G N+ K G Q+ +Q + + AF G P+EE ++
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQF---VGATVEDDVAFGMENQGIPREEMIKR 120
Query: 379 LGGFGVSG---DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ ++ D + LSGGQK RVA A + P ++LDE T+ LD
Sbjct: 121 VDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLD 172
|
Length = 277 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 8e-05
Identities = 45/184 (24%), Positives = 70/184 (38%), Gaps = 57/184 (30%)
Query: 275 PILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
+L +V+ Y GK L V L + ++G NGAGKTTLL + G T+G
Sbjct: 4 VMLSFDKVSAHY--GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGR 61
Query: 334 ---------------------------------RTVHRNLKFG-YFSQHHVDQLDMNLRC 359
TV NL G +F++ Q
Sbjct: 62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQ------- 114
Query: 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
+ ++ + P+ RR +Q G++SGG++ +A R M+ P L+L
Sbjct: 115 -ERIKWVYELFPRLHERR------------IQRAGTMSGGEQQMLAIGRALMSQPRLLLL 161
Query: 420 DEPT 423
DEP+
Sbjct: 162 DEPS 165
|
Length = 237 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 320 LKIIMGIIS--PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377
L+ + I+S P +++ N+KFG + + D+ C F +Y
Sbjct: 1294 LRNLFSIVSQEPMLFNMSIYENIKFG---KEDATREDVKRACKFAAIDEFIESLPNKYDT 1350
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
+G +G SLSGGQK R+A AR + P L+LDE T+ LD + + + K
Sbjct: 1351 NVGPYG----------KSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKT 1400
Query: 438 I 438
I
Sbjct: 1401 I 1401
|
Length = 1466 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 46/163 (28%), Positives = 61/163 (37%), Gaps = 41/163 (25%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT-------------------------------- 333
+ ++G NGAGKTT+ + G PT GT
Sbjct: 34 VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFR 93
Query: 334 -RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG--DLAL 390
TV NL +QH QL L L AF E R G + A
Sbjct: 94 EMTVIENL---LVAQHQ--QLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHAN 148
Query: 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIE 432
+ G+L+ GQ+ R+ AR + P L+LDEP L+ ET E
Sbjct: 149 RQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKE 191
|
Length = 255 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
SGGQ+ R+A AR M P+ +V DEP + LD+
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQ+ R+A AR + L+LDE T+ LD E+ A+ A+++
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 525
|
Length = 582 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SGGQ+ R+A AR + P ++LDEPT+ LD
Sbjct: 428 SGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ LSGG + + A+ + P L+LDEPT +D+
Sbjct: 403 IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
|
Length = 506 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
LSGGQ+ R+ AR P L+LDEPT+ LD I T IE L
Sbjct: 144 GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEEL 186
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L +P +V+SHDR FLD + T I F SQ ++ + GN++ +++ K +L
Sbjct: 484 LEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQ-VEWFEGNFQEYEEDKKRRLGA- 541
Query: 210 QREIEAQRMHR 220
+A R HR
Sbjct: 542 ----DAARPHR 548
|
Length = 556 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
E YRR L + + A Q +LSGG + +V A+ A+P L++DEPT +D+
Sbjct: 384 ERYRRALN---IKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
|
Length = 510 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 392 FVGS----LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439
VGS LSGGQK R++ AR + P L+LDE T+ LD ++ + K IN
Sbjct: 572 LVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTIN 623
|
Length = 1466 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 49/174 (28%), Positives = 68/174 (39%), Gaps = 25/174 (14%)
Query: 279 LSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMG-IISPTAGT 333
L V++ Y P L N L C++G G+GK+T++++ G IIS T T
Sbjct: 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT 68
Query: 334 RTVHRNLKFGYFSQHHVDQLDMNLRCV------QLLEAAFP-----------GKPQEEYR 376
+ V +L + V QL + QE Y+
Sbjct: 69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK 128
Query: 377 R---QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ L + D + LSGGQK RVA A + N LVLDEPT LD
Sbjct: 129 KVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182
|
Length = 289 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/32 (59%), Positives = 21/32 (65%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQK RVA A + P L+LDEPT LD
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLD 176
|
Length = 287 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD------IETIEALGKAINKYT 442
LSGGQ+ RV AR+ +P ++LDEPT+ LD IE E L + YT
Sbjct: 148 GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIE--ETLLGLKDDYT 199
|
Length = 252 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 41/148 (27%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKF----------GYFSQHHVDQLDMNL 357
+VG NGAGK+TLL + G+ S + + + L+ Y SQ M +
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPV 89
Query: 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----- 412
L P K + E + G D + LSGG+ RV A + +
Sbjct: 90 --WHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDA 147
Query: 413 --APNFLVLDEPTNHLDIETIEALGKAI 438
A L+LDEP N LD+ AL + +
Sbjct: 148 NPAGQLLLLDEPMNSLDVAQQSALDRLL 175
|
Length = 248 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ RV AR+ P+ ++LDEPT+ LD
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L + +V+SHDR FLD + T I F S ++ + GNY +++ K +L
Sbjct: 482 LEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSH-VEWFEGNYSEYEEDKKRRLGE- 539
Query: 210 QREIEAQRMHR 220
+A + HR
Sbjct: 540 ----DADQPHR 546
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 48/184 (26%)
Query: 274 PPILQLSEVNFEYVPG----KPILTNV---CLGATLESRICIVGDNGAGKTTLLKII--- 323
+L +N+ VP + +L N+ TL + ++G++GAGKTTLL ++
Sbjct: 1 GSVLTWKNLNY-TVPVKGGKRQLLNNISGYVKPGTLTA---LMGESGAGKTTLLDVLAGR 56
Query: 324 --MGIISPTAGTRTVHRNLKFGYFSQH--HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379
G+I+ G ++ F + +V+Q D++ + + E
Sbjct: 57 KTAGVIT---GEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVRE--------------- 98
Query: 380 GGFGVSGDLALQFVGSLSG---GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
AL+F L G Q+ R+ A P+ L LDEPT+ LD + + +
Sbjct: 99 ---------ALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149
Query: 437 AINK 440
+ K
Sbjct: 150 FLKK 153
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 20/129 (15%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAG------------TRTVHRNLKFGYFSQHHVDQLDM 355
IVG+NG GK+TL K+ G+ P G +R +R+L F+ H+
Sbjct: 373 IVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFD--- 429
Query: 356 NLRCVQLLEAAFPGKPQ-EEYRRQLG-GFGVS-GDLALQFVGSLSGGQKSRVAFARMCMA 412
+ E ++Y ++L V D +LS GQ+ R+A +
Sbjct: 430 --DLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLE 487
Query: 413 APNFLVLDE 421
L+ DE
Sbjct: 488 DRPILLFDE 496
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEA 433
SGGQ+ R+A AR + P+ ++LDEPT+ LD +T++A
Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD-KTVQA 462
|
Length = 529 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAI-NKYT 442
LSGGQ+ R+ AR P L++DEPT+ LD I T IE L + + YT
Sbjct: 146 GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT 197
|
Length = 250 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ RVA R +A P+ +LDEP ++LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 52/178 (29%), Positives = 77/178 (43%), Gaps = 36/178 (20%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L S++ F Y +P+L + L +L +VG NG GK+TL + G++ P G
Sbjct: 1 MLATSDLWFRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA-- 57
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCV------QLL------EAAFP----GKPQEEYRRQL 379
V K +S+ + L + V Q+ + AF G P+ E R++
Sbjct: 58 VLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRV 117
Query: 380 GGFGVSGDLALQFVGS----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
D AL V + LS GQK RVA A + +L+LDEPT LD
Sbjct: 118 -------DEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
|
Length = 271 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 26/161 (16%)
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------L 340
+ IL V A+ + ++G +G+GK+TLL + G I T T+ N
Sbjct: 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK 140
Query: 341 KFGYFSQHHVDQLDMNLR----CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL------ 390
+ G+ +Q + + +R LL QE + L V +L L
Sbjct: 141 RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQE---KILVAESVISELGLTKCENT 197
Query: 391 ----QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
F+ +SGG++ RV+ A + P+ L+LDEPT+ LD
Sbjct: 198 IIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 4e-04
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 25/160 (15%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG---YFSQHH 349
L + + +S + +G +G GK+T L++ + TR G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 350 VDQLDMNLRCVQLLEAAFP--------------GKPQEEYRRQ-----LGGFGVSGDLAL 390
VD+L N+ V FP G + RQ L G + ++
Sbjct: 79 VDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKD 138
Query: 391 QFVGS---LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ S LSGGQ+ R+ AR +P+ L++DEP + LD
Sbjct: 139 KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALD 178
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEAL 434
SLSGGQ+ R+ AR P L+LDEP + LD I T IE L
Sbjct: 156 SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEEL 198
|
Length = 260 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
F V SLSGG + ++ AR P+ L+ +PT LD+ IE + + +
Sbjct: 390 FDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD---IETIEALGKAIN-KYT 442
LSGGQ+ R+ AR P ++LDEPT+ LD + IE L + ++ YT
Sbjct: 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYT 197
|
Length = 250 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 49/186 (26%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++ V++ Y G P + +V IVG G+GK+TL++ I ++ PT G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 333 TRTV---------------HRNLKFGYFSQHHVDQL----------------DMNLRCVQ 361
T TV + G Q QL MNL V+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 362 LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421
A R L G S D+ Q +SGGQ ++A + P+ +VLDE
Sbjct: 123 --NYAH---------RLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 422 PTNHLD 427
PT LD
Sbjct: 172 PTAGLD 177
|
Length = 286 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 47/186 (25%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G +L N+ + R+ ++G G+GK+TLL + +++ T G
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG--------------DI 60
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFGVSGDLAL------------ 390
+D + N +Q AF PQ+ +R+ L +G D +
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSV 120
Query: 391 --QFVGS-----------LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
QF G LS G K + AR ++ L+LDEP+ HLD T + + K
Sbjct: 121 IEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKT 180
Query: 438 INKYTF 443
+ K F
Sbjct: 181 L-KQAF 185
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETI---EALGKAINKYT 442
SLSGGQ+ R+ AR P+ L++DEPT+ LD + T E + K KYT
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
|
Length = 259 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 7e-04
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEAL 434
G LSGGQ+ R+ AR P L+ DEPT +LD E IE+L
Sbjct: 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESL 188
|
Length = 250 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGG+K RV AR P + DEPT LD +T + + A+ +
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE 213
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LSGGQ+ RV A P+ L+ DEPT LD+
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-------------- 333
+ +L NV L + ++G +G GK+TL ++++G+ SP+ G
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 334 --RTVHRNLK------FGYFS-QHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG 383
+ R+++ + + V + + LR + L+ A + L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA---ERLARASEMLRAVD 139
Query: 384 VSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+ + + LSGGQ RV AR P L+LDE ++LD+
Sbjct: 140 LDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184
|
Length = 268 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352
L N+ + I+G NG+GK+TL +I G+ P GT + + S Q
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQ 99
Query: 353 LDMNLRCVQL--LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410
L + ++L L + +E ++ F G Q V + S G KSR+ FA
Sbjct: 100 L-TGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISV 158
Query: 411 MAAPNFLVLDE 421
P+ LV+DE
Sbjct: 159 HINPDILVIDE 169
|
Length = 549 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 44/162 (27%), Positives = 62/162 (38%), Gaps = 27/162 (16%)
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------- 333
P+L NV L + + G +G+GK+TLL+ + P G
Sbjct: 25 PVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84
Query: 334 RTVH--RNLKFGYFSQH-----HVDQLDMNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVS 385
R V R GY SQ V LD+ LL P + + + L +
Sbjct: 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAE--PLLARGVPREVARAKAADLLTRLNLP 142
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L + SGG++ RV AR + L+LDEPT LD
Sbjct: 143 ERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLD 184
|
Length = 235 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
SLSGGQ+ R+ AR PN +++DEPT+ LD
Sbjct: 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
|
Length = 254 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 14/59 (23%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
P +V+F+ PG+ +L IVG++G+GKTTLL + ++P AG
Sbjct: 18 PRKGCRDVSFDLYPGE-VL-------------GIVGESGSGKTTLLNALSARLAPDAGE 62
|
Length = 258 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 248 ERLPELKPIEKEVEVVLKFPDTELLSP--PILQLSEVNFEYVPGK-PILTNVCLGATLES 304
R+ E+ E++ EV FP T + L L+ V+F Y P+L + L
Sbjct: 312 RRINEI--TEQKPEVT--FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGE 367
Query: 305 RICIVGDNGAGKTTLLKII 323
++ ++G G GK+TLL+++
Sbjct: 368 KVALLGRTGCGKSTLLQLL 386
|
Length = 574 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+LSGGQ+ R+ AR P L++DEPT ++D
Sbjct: 148 SNLSGGQRQRLVIARALAMKPKILLMDEPTANID 181
|
Length = 253 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 19/118 (16%)
Query: 152 LENYLQNWPTTLLVVSHDRHFLDSVPTD--IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQ 209
LE L ++ T+L+VSHDR F+D+ T+ IF + + I Y G Y D Q
Sbjct: 479 LEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGK-IGRYVGGY--HDAR-------Q 528
Query: 210 QREIEAQRMHREHVQKFIDTFRYNANRASSVQSKI-----KQLERLPE-LKPIEKEVE 261
Q+ + + + V+K + A K+ ++LE+LP+ L+ +E E+E
Sbjct: 529 QQA-QYLALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELEQLPQLLEDLEAEIE 585
|
Length = 635 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 47/186 (25%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348
G+ +L ++ R+ ++G G+GK+TLL ++ ++S T G +
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG--------------EI 1275
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQE------EYRRQLGGFG---------VSGDLAL--- 390
+D + N +Q AF PQ+ +R+ L + V+ ++ L
Sbjct: 1276 QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSV 1335
Query: 391 --QFVGSL-----------SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437
QF L S G K + AR ++ L+LDEP+ HLD T++ + K
Sbjct: 1336 IEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKT 1395
Query: 438 INKYTF 443
+ K +F
Sbjct: 1396 L-KQSF 1400
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTA--------GTR--------TVHRNLKFGYFS-QHHV 350
IVG NGAGK+TLL +I G P G R + +++ GY S H+
Sbjct: 291 IVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSGETIWDIKKHI--GYVSSSLHL 347
Query: 351 D-QLDMNLRCVQL--------LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401
D ++ ++R V L + A + Q+ ++ L G+ A SLS GQ+
Sbjct: 348 DYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQ 407
Query: 402 SRVAFARMCMAAPNFLVLDEPTNHLD 427
R + P L+LDEP LD
Sbjct: 408 RLALIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P L+LDEPT+ LD
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
|
Length = 286 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IET--IEALGKAI-NKYT 442
LSGGQ+ R+ AR P L+LDEPT+ LD I T IE L + +KYT
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYT 219
|
Length = 272 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 20/134 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
+ +VG G GK++LL ++ + G VH Y Q Q D L E
Sbjct: 667 VAVVGQVGCGKSSLLSALLAEMDKVEGH--VHMKGSVAYVPQQAWIQND------SLREN 718
Query: 366 AFPGKPQEE--YRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAA 413
GK E Y++ L + DL + G +LSGGQK RV+ AR +
Sbjct: 719 ILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778
Query: 414 PNFLVLDEPTNHLD 427
+ + D+P + +D
Sbjct: 779 ADIYLFDDPLSAVD 792
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.002
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +++G F D Q +LSGGQ+ R+ AR P L+LDEPT+ LD
Sbjct: 120 VDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALD 174
|
Length = 246 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+G LSGG + + A+M + P L+LDEPT +D+
Sbjct: 401 IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.002
Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 40/139 (28%)
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
I G NG+GK+T+L I + +K G
Sbjct: 25 IITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIV-------------------- 64
Query: 367 FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA-RMCMAAPN---FLVLDEP 422
LSGG+K A A + +A+ +LDE
Sbjct: 65 ----AAVSAELIF------------TRLQLSGGEKELSALALILALASLKPRPLYILDEI 108
Query: 423 TNHLDIETIEALGKAINKY 441
LD +AL +AI ++
Sbjct: 109 DRGLDPRDGQALAEAILEH 127
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSGGQ+ R+ AR P+ +++DEPT+ LD
Sbjct: 167 GLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 393 VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
+GSLSGG + +V R + P L+LDEPT +D+
Sbjct: 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424
|
Length = 491 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 38.9 bits (90), Expect = 0.003
Identities = 44/169 (26%), Positives = 64/169 (37%), Gaps = 27/169 (15%)
Query: 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG 343
F + G L+N+ + IVG G GK++LL I+G + G VH + K
Sbjct: 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGK--VHWSNKNE 65
Query: 344 YFSQHHVDQLDMNLRCVQ-------LLEAAFP-----GKP--QEEYRRQLGGFGVSGDLA 389
N V LL A G P ++ Y+ + D+
Sbjct: 66 S-EPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDID 124
Query: 390 LQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428
L G +LSGGQ+ R+ AR N + LD+P + LDI
Sbjct: 125 LLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI-------ETIEALGKAINKYT 442
LSGGQ+ R+ AR P L++DEPT+ LD E I L K KYT
Sbjct: 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYT 200
|
Length = 253 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.003
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
GDLA +LSGGQ+ R+ AR P L+ DEPT+ LD
Sbjct: 156 GDLAF----NLSGGQQQRLCIARALATDPEILLFDEPTSALD 193
|
Length = 265 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 36/147 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------------RTVHRN---LKFGYFS-Q 347
I+G +G+GK+T+++++ +I PT G R V R + F F+
Sbjct: 59 IMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118
Query: 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYR-------RQLGGFGVSGDLALQFVGSLSGGQ 400
H+ LD ++L G EE R RQ+G + A + LSGG
Sbjct: 119 PHMTVLDNTAFGMEL-----AGINAEERREKALDALRQVG----LENYAHSYPDELSGGM 169
Query: 401 KSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ RV AR P+ L++DE + LD
Sbjct: 170 RQRVGLARALAINPDILLMDEAFSALD 196
|
Length = 400 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.004
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 54/180 (30%)
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI---------------------ISPT- 330
L + L + + G+NGAGK+TL+KI+ G+ I T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 331 -AGTRTVHR------------NLKFGYFSQHHVDQLD---MNLRCVQLLEAAFPGKPQEE 374
AG +H+ N+ G ++ M LR LL
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLL----------- 125
Query: 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
R+L + D + VG GGQ+ V A+ L+LDEP++ L + E L
Sbjct: 126 --REL---QLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEIL 180
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
PG L NV L S ++G+NGAGK+TLLK + GI +G+
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS 54
|
Length = 491 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETIE 432
LSGGQ+ R+ AR P+ +++DEPT+ LD I T++
Sbjct: 147 KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD-IETI---EALGKAINKYT 442
+LSGGQ+ R+ AR P+ L++DEP + LD I T+ E + + YT
Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT 214
|
Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0927|consensus | 614 | 100.0 | ||
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| KOG0066|consensus | 807 | 100.0 | ||
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0062|consensus | 582 | 100.0 | ||
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.98 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.98 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.98 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.98 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| KOG0057|consensus | 591 | 99.98 | ||
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.98 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.98 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.98 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.98 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.98 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.98 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.98 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.98 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.97 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.97 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.97 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.97 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.97 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.97 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.97 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.97 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.97 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.97 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.97 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.97 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.97 | |
| KOG0058|consensus | 716 | 99.97 | ||
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.97 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.97 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.97 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.97 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.97 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.97 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.97 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.97 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.97 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.97 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.97 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.97 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.97 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.97 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| KOG0055|consensus | 1228 | 99.96 | ||
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.96 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.96 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.96 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| KOG0054|consensus | 1381 | 99.96 | ||
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.96 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.96 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.96 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.96 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.96 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.96 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.96 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.95 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.95 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.95 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.95 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.95 | |
| KOG0055|consensus | 1228 | 99.95 | ||
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.95 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.95 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| KOG0062|consensus | 582 | 99.95 | ||
| KOG0056|consensus | 790 | 99.95 | ||
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.94 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.94 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.94 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.94 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.94 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.94 | |
| KOG0927|consensus | 614 | 99.94 | ||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.94 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.93 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.93 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.93 | |
| KOG0061|consensus | 613 | 99.92 | ||
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.92 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.92 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.92 | |
| KOG0059|consensus | 885 | 99.91 | ||
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.91 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.89 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.88 | |
| KOG0054|consensus | 1381 | 99.88 | ||
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.87 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.87 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.87 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.85 | |
| KOG0060|consensus | 659 | 99.85 | ||
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.85 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.84 | |
| KOG0066|consensus | 807 | 99.84 | ||
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.83 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| KOG0064|consensus | 728 | 99.82 | ||
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.82 | |
| KOG2355|consensus | 291 | 99.81 | ||
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.79 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.79 | |
| KOG0063|consensus | 592 | 99.79 | ||
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.77 | |
| KOG0065|consensus | 1391 | 99.75 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.73 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.73 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.65 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.64 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.61 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.59 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.55 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.53 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.52 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.52 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.52 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.52 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.49 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.48 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.47 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.46 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.46 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.43 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.42 | |
| KOG0065|consensus | 1391 | 99.4 | ||
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.39 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.39 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.39 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.39 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.39 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.39 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.38 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.37 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.37 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.37 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.36 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.36 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.36 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.36 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.36 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.35 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.35 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.35 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.35 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.34 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.34 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.33 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.33 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.33 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.33 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.33 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.33 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.33 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.32 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.32 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.32 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.32 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.32 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.31 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.31 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.31 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.31 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.31 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.31 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.31 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.31 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.31 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.3 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.29 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.29 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.29 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.29 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.29 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.29 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.29 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.29 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.29 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.29 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.29 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.28 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.28 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.28 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.28 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.28 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.28 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.28 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.28 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.28 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.28 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.27 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.27 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.27 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.27 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.27 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.27 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.27 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.26 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.26 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.26 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.26 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.26 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.26 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.26 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.26 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-85 Score=688.46 Aligned_cols=427 Identities=35% Similarity=0.579 Sum_probs=382.5
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCCC-CchHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVGD-DTPAI 63 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~~-~~~~~ 63 (443)
++.|+.+.||...+|+.+++.+.+ + | .+++|+|.++++++++|++|+++.+ ..|+.
T Consensus 5 ~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred EEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHH
Confidence 567889999999999999988888 1 1 2688999999999999999999875 56999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChH
Q psy208 64 DSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGG 143 (443)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGG 143 (443)
++|+.++..+.++.++++.+++.++.. ....+.++.++++..++|++++|+..+|.+|||+.. ++++++||||
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSGG 157 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYALLADP-----DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSGG 157 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcccc-----hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCHH
Confidence 999999999999999999988877432 345667777777778889999999999999999975 8999999999
Q ss_pred HHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 144 WRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 144 qr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||+ ++|.||++||++|++|||||||||+|||+|||+|++|+.|++..|.|||+.
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHHH
Confidence 999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CC-CCccccccccccCCCC-CC
Q psy208 198 FDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPE---LK-PIEKEVEVVLKFPDTE-LL 272 (443)
Q Consensus 198 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~---~~-~~~~~~~~~~~~~~~~-~~ 272 (443)
|.++|+++.+++.+.++++++++++++.|++++..++++++++++|+++++++.. .. +.....+..+.|+.++ ..
T Consensus 238 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 317 (530)
T COG0488 238 YLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRL 317 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccC
Confidence 9999999999999999999999999999999998888888899999999998873 22 2222333445676665 37
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
++++++++|++++|++++++++++||.|.+|++|||+||||+|||||||+|+|...|.+|+|.++.+.++||++|+.. .
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~-~ 396 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRD-E 396 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhh-h
Confidence 889999999999997667899999999999999999999999999999999999999999999999999999999874 3
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
+..+.++.+++....+...+..++.+|+.|+|+++...++++.||||||.||.||++++.+|+||||||||||||+++++
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~ 476 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLE 476 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHH
Confidence 44677899999887766568899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccc
Q psy208 433 ALGKAINKYT 442 (443)
Q Consensus 433 ~l~~~L~~~~ 442 (443)
+|+++|.+|+
T Consensus 477 aLe~aL~~f~ 486 (530)
T COG0488 477 ALEEALLDFE 486 (530)
T ss_pred HHHHHHHhCC
Confidence 9999999996
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-70 Score=588.75 Aligned_cols=425 Identities=33% Similarity=0.560 Sum_probs=344.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------CC--CCcceEEecCCceEEEEecccCCCCchHHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------GG--MVSGQLRIPSHISVLHVEQEVVGDDTPAID 64 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~~--~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~ 64 (443)
.+.|+++.|+...+|+.+++.+.+ + |. ||+|+|.+.++.+++|++|+......+.++
T Consensus 3 ~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~ 82 (638)
T PRK10636 3 VFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALE 82 (638)
T ss_pred EEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHH
Confidence 367888888888888888888877 1 22 688999999888999999975433356777
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHH
Q psy208 65 SVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW 144 (443)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGq 144 (443)
++.........+..++..++.. . ....+..+...++..++|+++.++..+|.++||.+..+++++.+|||||
T Consensus 83 ~v~~~~~~~~~l~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGe 154 (638)
T PRK10636 83 YVIDGDREYRQLEAQLHDANER-----N---DGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGW 154 (638)
T ss_pred HHHHhhHHHHHHHHHHHHHhcc-----C---CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHH
Confidence 7765443333333332222110 0 1123444455556677889999999999999997545789999999999
Q ss_pred HH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 145 RK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 145 r~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+ .++.||+++|+++++|||+||||++|++.+||+|++|++|++..|.|||+.|
T Consensus 155 rqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 155 RMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99 7999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEE
Q psy208 199 DKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQ 278 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (443)
..+++++.+.+.+.++++++++++++.|+++++..+.++++++++.++++++....+........+.|+.+...++++|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 314 (638)
T PRK10636 235 EVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLK 314 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEE
Confidence 99998888888889999999999999999987776667778899999888876433222123345566555555678999
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+..+..+||++|+....+....+
T Consensus 315 ~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 315 MEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADES 393 (638)
T ss_pred EEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccch
Confidence 999999996 5679999999999999999999999999999999999999999999997777899999975333444455
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+.+.+....+......+..+|+.|+|..+..++++++|||||||||+||++++.+|+||||||||||||+.+++.|.++|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L 473 (638)
T PRK10636 394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473 (638)
T ss_pred HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 55555432223345678899999999766788999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+|
T Consensus 474 ~~~ 476 (638)
T PRK10636 474 IDF 476 (638)
T ss_pred HHc
Confidence 887
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=540.94 Aligned_cols=430 Identities=36% Similarity=0.636 Sum_probs=377.9
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CCC--------CCcceEEecCCceEEEEecccCCCCchHHHHHH-hc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EGG--------MVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVL-EC 69 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~-~~ 69 (443)
.+.|+.+.|-+..+++-.++++++ +|. ...+.+.+|..+.+..+.++.++...++++.++ ..
T Consensus 77 k~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~ 156 (614)
T KOG0927|consen 77 KIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMET 156 (614)
T ss_pred eeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhh
Confidence 577888889888899888888887 221 134566788889999999998887777788777 44
Q ss_pred cHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---
Q psy208 70 DTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--- 146 (443)
Q Consensus 70 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--- 146 (443)
+.+...++...+++....+ +...+.+..++++++..+...++.|+..+|.+|||...++++.+.+||||||+
T Consensus 157 ~~e~~rle~~~E~l~~~~d-----~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~a 231 (614)
T KOG0927|consen 157 DHERKRLEYLAEDLAQACD-----DKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAA 231 (614)
T ss_pred HHHHHHHHHHHHHHHhhcc-----chhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHH
Confidence 4456666666555554331 23467889999999999999999999999999999988999999999999999
Q ss_pred -----------------------HHHHHHHHHhhhCCC-eEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHH
Q psy208 147 -----------------------MAIIWLENYLQNWPT-TLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIK 202 (443)
Q Consensus 147 -----------------------~~i~wL~~~L~~~~~-tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~ 202 (443)
+++.||++||+.|.. ++|||||+++||+.|||+||+++.+++..|.|||+.|...|
T Consensus 232 LAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr 311 (614)
T KOG0927|consen 232 LARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTR 311 (614)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccceeeecCCHHHHhhHH
Confidence 899999999999988 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCC---CCCCccccccccccCCCCCCCCCeEE
Q psy208 203 TEKLKNQQREIEAQRMHREHVQKFIDTFRY-NANRASSVQSKIKQLERLPE---LKPIEKEVEVVLKFPDTELLSPPILQ 278 (443)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (443)
.+..+++.++++++|+++.+++.++.+++. .+....+++++.+.++++.. ...+..+....+.|+.-...+.|++.
T Consensus 312 ~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~ 391 (614)
T KOG0927|consen 312 SELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIM 391 (614)
T ss_pred HHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEE
Confidence 999999999999999999999999998875 34556788889888887653 23344455677888876666789999
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
+.|++|+|.++..++++++|-|+.++++++|||||+|||||||+++|.+.|+.|.|..+...+++++.|+..+.++.+.+
T Consensus 392 ~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s 471 (614)
T KOG0927|consen 392 VQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKS 471 (614)
T ss_pred EeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchh
Confidence 99999999866679999999999999999999999999999999999999999999988888899999998888999999
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 359 CVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 359 ~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
..+++...+++ ...+.++.+|++|||.++....++++||+|||.||++|++++.+|++|||||||||||+++++.+.++
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea 551 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence 99999888885 56788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hcccc
Q psy208 438 INKYT 442 (443)
Q Consensus 438 L~~~~ 442 (443)
|++|+
T Consensus 552 iNe~~ 556 (614)
T KOG0927|consen 552 INEFP 556 (614)
T ss_pred HhccC
Confidence 99986
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-66 Score=561.76 Aligned_cols=434 Identities=44% Similarity=0.768 Sum_probs=344.4
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CCC-------CCcceE--EecCCceEEEEecccCCCCchHHHHHHhc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EGG-------MVSGQL--RIPSHISVLHVEQEVVGDDTPAIDSVLEC 69 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-------~~~G~i--~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~ 69 (443)
.+.|+++.|+...+|+.+++.+.+ +|. .-+|.. .+|.+.+|+|++|++..+..++.+.++.+
T Consensus 179 ~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~ 258 (718)
T PLN03073 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNT 258 (718)
T ss_pred EEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHh
Confidence 467899999888899999988888 221 112321 15778899999998765556777777766
Q ss_pred cHHHHHHHHHHHHHHHHH-----h-----------CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhh
Q psy208 70 DTKRQNLLNREKTITQAI-----N-----------NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQ 133 (443)
Q Consensus 70 ~~~~~~l~~~~~~l~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~ 133 (443)
+.....+.++...+..+. . .+.+.++..+++.+++++++..++|.+++|+..+|.++||++..+
T Consensus 259 ~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~ 338 (718)
T PLN03073 259 DIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQ 338 (718)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHH
Confidence 655444443322222111 0 000112355789999999999999999999999999999986667
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCe
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~ 187 (443)
++++.+||||||+ .++.||.++|+++++|||+||||++|++.+||+|++|++|+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~ 418 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQK 418 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 8999999999999 79999999999999999999999999999999999999999
Q ss_pred eEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccC
Q psy208 188 IDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFP 267 (443)
Q Consensus 188 i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 267 (443)
+..|.|+|+.|...++++.+.++++++++++++++++.++++++.++.++..++++.+.++++....++..+....+.++
T Consensus 419 i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~~~~~~~~ 498 (718)
T PLN03073 419 LVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFP 498 (718)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCCCceeecC
Confidence 99999999999999988888888999999999999999998877766666667777776766543222211122233343
Q ss_pred CCC-CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEec
Q psy208 268 DTE-LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346 (443)
Q Consensus 268 ~~~-~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~ 346 (443)
... ..+.++|+++||+++|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+..+..+||++
T Consensus 499 ~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~ 578 (718)
T PLN03073 499 TPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFS 578 (718)
T ss_pred CCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEe
Confidence 321 2345789999999999645579999999999999999999999999999999999999999999988778899999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++...+....+....+...++....+.++.+|+.+|+..+..++++.+|||||||||+||++++.+|++||||||||||
T Consensus 579 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 579 QHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred ccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 98643333332322222222334456778899999999766678999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.+|
T Consensus 659 D~~s~~~l~~~L~~~ 673 (718)
T PLN03073 659 DLDAVEALIQGLVLF 673 (718)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999875
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=522.68 Aligned_cols=416 Identities=43% Similarity=0.694 Sum_probs=352.8
Q ss_pred HHccccccCCCC--------CcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChh
Q psy208 24 ALTLHLHLEGGM--------VSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADAN 95 (443)
Q Consensus 24 ~~~~~~~~~~~~--------~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 95 (443)
---|.+.|+|-. ....+.+|+++-+.|.+|++..++++.++.|+.++..+.+++.+..+|...+..+. ..
T Consensus 291 RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~t 368 (807)
T KOG0066|consen 291 RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TT 368 (807)
T ss_pred ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hH
Confidence 334566777631 23456789999999999999888899999999999999999999999998887653 34
Q ss_pred hHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHH
Q psy208 96 MSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAI 149 (443)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i 149 (443)
..+++.++++++.+++++.+++|++++|.||||+.++++||...+|||||+ .++
T Consensus 369 aaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAV 448 (807)
T KOG0066|consen 369 AAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAV 448 (807)
T ss_pred HHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCcccccccee
Confidence 678999999999999999999999999999999999999999999999999 588
Q ss_pred HHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 150 IWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDT 229 (443)
Q Consensus 150 ~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (443)
.||-+||+.|+.|++|||||..|||.|||.||+|++.++.+|.|||+.|.....+..+.....|++|+++.+.++..-.-
T Consensus 449 IWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS 528 (807)
T KOG0066|consen 449 IWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKS 528 (807)
T ss_pred eehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999998888888888999998877766532110
Q ss_pred HHHHHHHH-HHHHHHHHHHhcC----------CCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeE
Q psy208 230 FRYNANRA-SSVQSKIKQLERL----------PELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCL 298 (443)
Q Consensus 230 ~~~~~~~~-~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl 298 (443)
-+...... .+...+++.-.+- .++...+++..++|.||.++....|+|-+.+|+|.|++.+++|..++|
T Consensus 529 ~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldF 608 (807)
T KOG0066|consen 529 AKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDF 608 (807)
T ss_pred hHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccc
Confidence 00000000 0001111100000 011123445678899998888888999999999999888899999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-|.-..+||||||||.||||||++|.|.+.|..|+..-+.+.+||++.|+....+....++.+++...|. ...++++..
T Consensus 609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN-lpyq~ARK~ 687 (807)
T KOG0066|consen 609 GIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFN-LPYQEARKQ 687 (807)
T ss_pred cccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcC-CChHHHHHH
Confidence 9999999999999999999999999999999999999888999999999988888888999999987663 467889999
Q ss_pred HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|+.||+......-.+..||||||.||+||-+.+..|+|||||||||+||++++.+|.++|++|.
T Consensus 688 LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~ 751 (807)
T KOG0066|consen 688 LGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN 751 (807)
T ss_pred hhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc
Confidence 9999997666566889999999999999999999999999999999999999999999999985
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-65 Score=556.54 Aligned_cols=427 Identities=25% Similarity=0.427 Sum_probs=337.4
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCCC-CchHH
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVGD-DTPAI 63 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~~-~~~~~ 63 (443)
++.|+++.|+...+|+.+++.+.+ + | .+++|+|.+.++.+++|++|.+... ..++.
T Consensus 5 ~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~ 84 (635)
T PRK11147 5 SIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVY 84 (635)
T ss_pred EEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHH
Confidence 467888888887788888888877 1 2 2588999998888899999976433 35667
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChH
Q psy208 64 DSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGG 143 (443)
Q Consensus 64 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGG 143 (443)
+.+..+...+......+..+...+... ...+....+..+.+.+...++|..+.++..+|.++||.. ++++.+||||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~---~~~~~~LSgG 160 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETD-PSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP---DAALSSLSGG 160 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC---CCchhhcCHH
Confidence 666554433444444444454444221 111233445555556666778888999999999999972 7899999999
Q ss_pred HHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 144 WRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 144 qr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||+ .++.||+++|+++++|||+||||++|++.+||+|++|++|+++.|.|||+.
T Consensus 161 ekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 161 WLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHH
Confidence 999 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCccccccccccCCCCCCCCC
Q psy208 198 FDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLP--ELKPIEKEVEVVLKFPDTELLSPP 275 (443)
Q Consensus 198 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 275 (443)
|..+++++.+.+...++++++++++++.++++ +..+.+.++ +++.++++++. ...+........+.|+.....+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (635)
T PRK11147 241 YLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRTRN-EGRVRALKALRRERSERREVMGTAKMQVEEASRSGKI 318 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhH-HHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCc
Confidence 99999888877778888888999898888876 333333333 66777776653 121111112334555554455678
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.++.+..+||++|++ ..+.+
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i~y~~q~~-~~l~~ 396 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQHR-AELDP 396 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEEEEEeCcc-cccCC
Confidence 999999999996 5679999999999999999999999999999999999999999999987677899999975 34566
Q ss_pred chhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
..++.+++...... .....+..+|+.|++..+..++++++|||||||||+||++++.+|++|||||||||||+.++
T Consensus 397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~ 476 (635)
T PRK11147 397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETL 476 (635)
T ss_pred CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHH
Confidence 67787777543211 11456788999999976678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcccc
Q psy208 432 EALGKAINKYT 442 (443)
Q Consensus 432 ~~l~~~L~~~~ 442 (443)
+.|.++|.+|.
T Consensus 477 ~~l~~~l~~~~ 487 (635)
T PRK11147 477 ELLEELLDSYQ 487 (635)
T ss_pred HHHHHHHHhCC
Confidence 99999998863
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-67 Score=525.50 Aligned_cols=322 Identities=56% Similarity=0.886 Sum_probs=306.0
Q ss_pred HHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHh
Q psy208 121 VILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLD 174 (443)
Q Consensus 121 ~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd 174 (443)
.+|.+|||+++++.+|+.+||||||| .+|.||++||+.|+.|+|+|||||.|||
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLN 259 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHH
Confidence 39999999999999999999999999 7999999999999999999999999999
Q ss_pred ccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy208 175 SVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELK 254 (443)
Q Consensus 175 ~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~ 254 (443)
.|||.||++++.++..|.|||+.|.+.+.++...++++|+.+.+.+++++.++.+|++++++++.++||++.++++....
T Consensus 260 ~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk 339 (582)
T KOG0062|consen 260 TVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALK 339 (582)
T ss_pred HHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCccccccccccCCC-CCCCCCeEEEeeeEEEeCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 255 PIEKEVEVVLKFPDT-ELLSPPILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~~~-~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
++..+....+.||.+ .....|+|++.+|+|.|.++. +++.++++.++.-++++++|+||+||||++|++.|...|..|
T Consensus 340 ~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rg 419 (582)
T KOG0062|consen 340 STLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRG 419 (582)
T ss_pred ccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccc
Confidence 777777777888873 345678999999999998766 799999999999999999999999999999999999999999
Q ss_pred eEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 333 ~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
.+.++++.+++|+.|++.+.++...+.++.+...+++..+++++..++.||++++.+.+++..||||||-||+||.+...
T Consensus 420 i~~~~~r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 420 IVGRHPRLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred eeeecccceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcC
Confidence 99999999999999999888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|++|||||||||||.++..+|..+|++|.
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~ 529 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKNFN 529 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=514.74 Aligned_cols=435 Identities=25% Similarity=0.384 Sum_probs=328.0
Q ss_pred Ccccchhhhhhhhhhcc-hHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccC
Q psy208 1 MMSQRVNTVSNSIFCFS-SEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVV 56 (443)
Q Consensus 1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~ 56 (443)
||++-.-++.|+++.|+ ...+|+.+++.+.+ + | .+++|+|.+..+.++||++|++.
T Consensus 1 ~~~~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~ 80 (556)
T PRK11819 1 MMAQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ 80 (556)
T ss_pred CcccEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC
Confidence 78887888999999998 78889999888887 2 2 25899999887778999999986
Q ss_pred C-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhh
Q psy208 57 G-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGT-ADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQK 134 (443)
Q Consensus 57 ~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~ 134 (443)
. +..|+.+.+..+......+......+........ .....+.++.++.+.++..+.|+.+.++..+|..+|++. .+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~--~~ 158 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP--WD 158 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc--cc
Confidence 5 3457777665332211111111111111111100 112344567788888888899999999999999999963 58
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCee
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i 188 (443)
+++.+||||||+ .++.||.++|+++++|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 999999999999 799999999999999999999999999999999999999999
Q ss_pred EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy208 189 DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPD 268 (443)
Q Consensus 189 ~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 268 (443)
..|.|+|+.|.+.++...+.+.+.++++++++++++.++++.. .+ +....+++.+.++++....+...+....+.++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSP-KA-RQAKSKARLARYEELLSEEYQKRNETNEIFIPP 316 (556)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHHHhhcccccccCCCceeecCC
Confidence 8899999999988876666666667777776766666665421 11 112233344444443221111111112222333
Q ss_pred CCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccC
Q psy208 269 TELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 269 ~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~ 348 (443)
.+...+++|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++....+||++|+
T Consensus 317 ~~~~~~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~ 395 (556)
T PRK11819 317 GPRLGDKVIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQS 395 (556)
T ss_pred CCCCCCeEEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCc
Confidence 2223457899999999996 467999999999999999999999999999999999999999999998766789999998
Q ss_pred cccccccchhHHHHHHHhCC----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+ ..+....++.+++..... .......+.++..+++.....++++++|||||||||+||++++.+|++||||||||
T Consensus 396 ~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 474 (556)
T PRK11819 396 R-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTN 474 (556)
T ss_pred h-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 5 234555677777643211 11234456789999996556789999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+++.|.+.|.++
T Consensus 475 ~LD~~~~~~l~~~l~~~ 491 (556)
T PRK11819 475 DLDVETLRALEEALLEF 491 (556)
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999999876
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-59 Score=494.04 Aligned_cols=429 Identities=26% Similarity=0.453 Sum_probs=315.6
Q ss_pred hhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCC-CCchHHH
Q psy208 9 VSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVG-DDTPAID 64 (443)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~~~ 64 (443)
+.|+++.|+...+|+.+++.+.+ + | .+++|+|.+....++||++|++.. ...++.+
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e 83 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLD 83 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHH
Confidence 56677777766677777776666 1 2 247799998766689999999754 4567776
Q ss_pred HHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHH
Q psy208 65 SVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGW 144 (443)
Q Consensus 65 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGq 144 (443)
.+................+.. .. .........+.+..+.+....+|+.+.++..+|..+|++....++++.+|||||
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 84 TVIMGHTELWEVKQERDRIYA-LP--EMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHhhHHHHHHHHHHHHHhc-cc--ccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 665332111111111111100 00 000011234566666666777788888999999999998544467899999999
Q ss_pred HH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 145 RK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 145 r~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+ .++.||.++|+++++|||+||||++++..+||+|++|++|++..|.|+|++|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~ 240 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNYDEY 240 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCHHHH
Confidence 99 7899999999888899999999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-CCccccccccccCCCCCCCCCeE
Q psy208 199 DKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELK-PIEKEVEVVLKFPDTELLSPPIL 277 (443)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 277 (443)
..+++...+.+.++++++++++++++.++.+....+.+...++++.+.++++.... +........+.++.....++++|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 320 (530)
T PRK15064 241 MTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNAL 320 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCCCCCCCceE
Confidence 98888766666777788888887777666543322223334444555555432111 00000011112232222345789
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccch
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~ 357 (443)
+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+...+||++|++...+....
T Consensus 321 ~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~ 399 (530)
T PRK15064 321 EVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDL 399 (530)
T ss_pred EEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCC
Confidence 9999999996 467999999999999999999999999999999999999999999999887889999998633344445
Q ss_pred hHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 358 RCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 358 ~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++.+++.... .....+.+..+|..+++..+..++++.+|||||||||+||++++.+|++|||||||||||+.+++.|.+
T Consensus 400 t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 400 TLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred cHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 6666654321 122355678899999996556789999999999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 480 ~l~~~ 484 (530)
T PRK15064 480 ALEKY 484 (530)
T ss_pred HHHHC
Confidence 99876
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-58 Score=493.22 Aligned_cols=428 Identities=25% Similarity=0.376 Sum_probs=312.2
Q ss_pred hhhhhhhhcc-hHHHHHHHcccccc---------C------------C--CCCcceEEecCCceEEEEecccCC-CCchH
Q psy208 8 TVSNSIFCFS-SEFYCKALTLHLHL---------E------------G--GMVSGQLRIPSHISVLHVEQEVVG-DDTPA 62 (443)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~ 62 (443)
.+.|+++.|+ ...+|+.+++.+.+ + | .+++|+|.+..+.+|||++|++.. +..|+
T Consensus 6 ~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv 85 (552)
T TIGR03719 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTV 85 (552)
T ss_pred EEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcH
Confidence 4667777776 56677777776666 1 1 257799998766789999999864 44577
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhCCCCC-hhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCC
Q psy208 63 IDSVLECDTKRQNLLNREKTITQAINNGTAD-ANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFS 141 (443)
Q Consensus 63 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LS 141 (443)
.+.+..+.........++..+...+.....+ ...+..+.++.+.++..+.|+++.++..++..+|++. .++++.+||
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~LS 163 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP--WDADVTKLS 163 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc--ccCchhhcC
Confidence 7766533221111111121111111110000 1123356677777888888999999999999999963 578999999
Q ss_pred hHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCCh
Q psy208 142 GGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNY 195 (443)
Q Consensus 142 GGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y 195 (443)
||||+ .++.||.++|+++++|||+||||+++++.+||+|++|++|++..|.|+|
T Consensus 164 gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~ 243 (552)
T TIGR03719 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNY 243 (552)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCH
Confidence 99999 7889999999999899999999999999999999999999998899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCC
Q psy208 196 EAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPP 275 (443)
Q Consensus 196 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (443)
+.|.++++...+.+.+.+++.++++.++..++++... .. ....+++.+.++++....+...+....+.++.....+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (552)
T TIGR03719 244 SSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPK-AR-QAKSKARLARYEELLSQEFQKRNETAEIYIPPGPRLGDK 321 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hH-HHHHHHHHHHHHhhhhhcccccCCCceeecCCCCCCCCe
Confidence 9999887766666666666666666666655543111 11 112223333333322211111111112223322223467
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++....+||++|++. .+..
T Consensus 322 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~-~~~~ 399 (552)
T TIGR03719 322 VIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRD-ALDP 399 (552)
T ss_pred EEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCcc-ccCC
Confidence 899999999996 46799999999999999999999999999999999999999999999876668999999852 2445
Q ss_pred chhHHHHHHHhCC--C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAAFP--G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~~~--~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
..++.+++..... . ........++..+++.....++++.+|||||||||+||++++.+|++|||||||||||+.++
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 479 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETL 479 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Confidence 5677777653221 1 11334567899999965457899999999999999999999999999999999999999999
Q ss_pred HHHHHHHccc
Q psy208 432 EALGKAINKY 441 (443)
Q Consensus 432 ~~l~~~L~~~ 441 (443)
+.|.+.|.++
T Consensus 480 ~~l~~~l~~~ 489 (552)
T TIGR03719 480 RALEEALLEF 489 (552)
T ss_pred HHHHHHHHHC
Confidence 9999999876
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-48 Score=410.76 Aligned_cols=269 Identities=24% Similarity=0.340 Sum_probs=210.6
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeE
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTL 163 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tv 163 (443)
+...++.++|..+|+++ ..++++.+||||||| .+..|+.+.|+ +++.||
T Consensus 144 ~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tv 222 (520)
T TIGR03269 144 EAVGRAVDLIEMVQLSH-RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISM 222 (520)
T ss_pred HHHHHHHHHHHHcCChh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEE
Confidence 34568999999999975 468999999999999 67778766553 357899
Q ss_pred EEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 164 LVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSK 243 (443)
Q Consensus 164 iiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (443)
|+||||++++..+||+|+.|++|++. +.|+|+++.... .. . ...
T Consensus 223 iivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~-----------~~------~----~~~-------------- 266 (520)
T TIGR03269 223 VLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVF-----------ME------G----VSE-------------- 266 (520)
T ss_pred EEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHH-----------Hh------h----chh--------------
Confidence 99999999999999999999999986 478887763210 00 0 000
Q ss_pred HHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----CCceeeeeeEEEeCCCEEEEECCCCCcHHHH
Q psy208 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----GKPILTNVCLGATLESRICIVGDNGAGKTTL 319 (443)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTL 319 (443)
..+ + . ....+.++|+++||+++|++ .+++|+|+||+|.+|++++|+||||||||||
T Consensus 267 ---~~~-----~----~--------~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTL 326 (520)
T TIGR03269 267 ---VEK-----E----C--------EVEVGEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTL 326 (520)
T ss_pred ---hcc-----c----c--------ccCCCCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHH
Confidence 000 0 0 00012458999999999952 2579999999999999999999999999999
Q ss_pred HHHHHcCCCCCCceEEEc-C-----------------ceEEEEeccCcccccccchhHHHHHHHhC----CCC-CHHHHH
Q psy208 320 LKIIMGIISPTAGTRTVH-R-----------------NLKFGYFSQHHVDQLDMNLRCVQLLEAAF----PGK-PQEEYR 376 (443)
Q Consensus 320 lk~l~G~~~p~~G~i~~~-~-----------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~----~~~-~~~~~~ 376 (443)
+|+|+|+++|++|+|.+. + ...++|++|++. +....++.+++.... +.. ....+.
T Consensus 327 l~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 404 (520)
T TIGR03269 327 SKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD--LYPHRTVLDNLTEAIGLELPDELARMKAV 404 (520)
T ss_pred HHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc--cCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999883 2 124899999853 444567777664311 111 123567
Q ss_pred HHHhcCCCCh----hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSG----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~----~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++.+++.. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 405 ~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l 473 (520)
T TIGR03269 405 ITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473 (520)
T ss_pred HHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 7899999964 2568999999999999999999999999999999999999999999999999754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=414.02 Aligned_cols=305 Identities=16% Similarity=0.222 Sum_probs=214.8
Q ss_pred HHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH-----------------------------HHHHHHHHHhh-hCCCe
Q psy208 115 APARASVILAGLGFTP--EMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQ-NWPTT 162 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~-~~~~t 162 (443)
+..|+.++|+.+|+++ ..+++++++||||||| ..+.++...|. +++.|
T Consensus 142 ~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~t 221 (623)
T PRK10261 142 AMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMG 221 (623)
T ss_pred HHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCE
Confidence 4468889999999963 3568999999999999 34556666664 45889
Q ss_pred EEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
||+||||.+++..+||+|++|++|++. ..|++.++..... ..+.+. +...+...... ..+.
T Consensus 222 vi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~~~------l~~~~~~~~~~-----~~~~ 282 (623)
T PRK10261 222 VIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYTRA------LLAAVPQLGAM-----KGLD 282 (623)
T ss_pred EEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhhhh------hhhccCccccc-----cccc
Confidence 999999999999999999999999997 4788877642110 001100 00000000000 0000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----------CCceeeeeeEEEeCCCEEEEECCC
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----------GKPILTNVCLGATLESRICIVGDN 312 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----------~~~il~~vsl~i~~Ge~i~iiG~N 312 (443)
.......... .......+ ..++.....+.++|+++||++.|+. ...+|+|+||+|.+|++++|+|+|
T Consensus 283 ~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~n 359 (623)
T PRK10261 283 YPRRFPLISL-EHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGES 359 (623)
T ss_pred CCcccccccc-ccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCC
Confidence 0000000000 00000000 0000011123578999999999952 146999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEEEEeccCcccccccchhHHHHHHHh--CCCC-----C
Q psy208 313 GAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----P 371 (443)
Q Consensus 313 GsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~ 371 (443)
|||||||+|+|+|+++|++|+|.+.+. ..++|++|++...+.+..++.+++... .... .
T Consensus 360 GsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~ 439 (623)
T PRK10261 360 GSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA 439 (623)
T ss_pred CCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999987541 258999998643455566776665421 1111 1
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+.++|..+|+..+..++++++|||||||||+||+||+.+|+||||||||++||+.++..+.+.|.++
T Consensus 440 ~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l 509 (623)
T PRK10261 440 AARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509 (623)
T ss_pred HHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 2456788999999655678999999999999999999999999999999999999999999999999764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=390.55 Aligned_cols=290 Identities=22% Similarity=0.360 Sum_probs=220.2
Q ss_pred cCCHHHHHHHHHHhCCCChhhh-hccCCCCChHHHH-----------------------------HHHH-HHHHHhhhCC
Q psy208 112 ADKAPARASVILAGLGFTPEMQ-KRATKHFSGGWRK-----------------------------MAII-WLENYLQNWP 160 (443)
Q Consensus 112 ~~~~~~rv~~~L~~lgl~~~~~-~~~~~~LSGGqr~-----------------------------~~i~-wL~~~L~~~~ 160 (443)
..++..|+.++|+.+|+++... ++.+++||||||| .-|. -|.+.-++.+
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3456679999999999986544 4699999999999 2222 3333335789
Q ss_pred CeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 161 TTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240 (443)
Q Consensus 161 ~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (443)
.++|+||||...+.++||||++|++|+++.. |..++-.. +.++.|.+..
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~-G~~~~i~~-------~p~hpYT~~L----------------------- 254 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVET-GPTEEILS-------NPQHPYTRGL----------------------- 254 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEEe-cCHHHHHh-------ccCCcccHHH-----------------------
Confidence 9999999999999999999999999999875 55443221 1111222110
Q ss_pred HHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC------C----CceeeeeeEEEeCCCEEEEEC
Q psy208 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP------G----KPILTNVCLGATLESRICIVG 310 (443)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~------~----~~il~~vsl~i~~Ge~i~iiG 310 (443)
+...+....... ....... .....++++++||++.|.. . ..+++||||+|.+||++||||
T Consensus 255 ------l~a~p~~~~~~~-~~~~~~~---~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 255 ------LAAVPRLGDEKI-IRLPRRG---PLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred ------HhhCCCcccccc-ccccccc---ccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEEC
Confidence 000111000000 0000000 0115689999999999973 1 358999999999999999999
Q ss_pred CCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEEEeccCcccccccchhHHHHHHHhCC---CC----
Q psy208 311 DNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK---- 370 (443)
Q Consensus 311 ~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~---- 370 (443)
++|||||||.|+|+|+++|++|+|.+.+. ..+-+++|+|...+++..|+.+.+..... ..
T Consensus 325 eSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~ 404 (539)
T COG1123 325 ESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAE 404 (539)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHH
Confidence 99999999999999999999999987542 35788999999899999998887754221 11
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
..+.+.++|..+|+..+..+++|++||||||||++|||||+.+|++||+||||+.||+..+..+.+.|.++.
T Consensus 405 ~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq 476 (539)
T COG1123 405 RRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQ 476 (539)
T ss_pred HHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHH
Confidence 123477889999999888999999999999999999999999999999999999999999999999998753
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=399.94 Aligned_cols=278 Identities=19% Similarity=0.308 Sum_probs=209.9
Q ss_pred HHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCe
Q psy208 115 APARASVILAGLGFTP--EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTT 162 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~t 162 (443)
...++.++|+.+|+++ ...++++.+||||||| .+..|+.++|++ ++.|
T Consensus 130 ~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t 209 (529)
T PRK15134 130 ARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMG 209 (529)
T ss_pred HHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCe
Confidence 3568899999999974 2358899999999999 677788887754 4789
Q ss_pred EEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
||+||||.+++..+||+|++|++|++..+ |...++..... ..+. +....
T Consensus 210 vi~vtHd~~~~~~~~dri~~l~~G~i~~~-g~~~~~~~~~~-------~~~~---------~~~~~-------------- 258 (529)
T PRK15134 210 LLFITHNLSIVRKLADRVAVMQNGRCVEQ-NRAATLFSAPT-------HPYT---------QKLLN-------------- 258 (529)
T ss_pred EEEEcCcHHHHHHhcCEEEEEECCEEEEe-CCHHHHhhCCC-------CHHH---------HHHHH--------------
Confidence 99999999999999999999999998754 66544321100 0000 00000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCC----------CCceeeeeeEEEeCCCEEEEECCC
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVP----------GKPILTNVCLGATLESRICIVGDN 312 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~----------~~~il~~vsl~i~~Ge~i~iiG~N 312 (443)
......+ . + ....+.++|+++|+++.|+. ++++|+++||+|.+|++++|+|||
T Consensus 259 ------~~~~~~~----~------~-~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~n 321 (529)
T PRK15134 259 ------SEPSGDP----V------P-LPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGES 321 (529)
T ss_pred ------hCccccc----c------c-cCCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCC
Confidence 0000000 0 0 00113468999999999952 357999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEEEEeccCcccccccchhHHHHHHHh---CC-CC----
Q psy208 313 GAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FP-GK---- 370 (443)
Q Consensus 313 GsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~-~~---- 370 (443)
|||||||+|+|+|+++ ++|+|++.+ ...++|++|++...+....++.+++... .. ..
T Consensus 322 GsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 400 (529)
T PRK15134 322 GSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ 400 (529)
T ss_pred CCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHH
Confidence 9999999999999984 899998754 1248999998632344555666666421 11 01
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
....+.+++..+++..+..++++.+|||||||||+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 401 ~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 471 (529)
T PRK15134 401 REQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSL 471 (529)
T ss_pred HHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHH
Confidence 12456788999999645678999999999999999999999999999999999999999999999999865
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=395.02 Aligned_cols=357 Identities=14% Similarity=0.214 Sum_probs=249.1
Q ss_pred hhhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------------CceEEEE
Q psy208 7 NTVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------------HISVLHV 51 (443)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------------~~~i~~l 51 (443)
=.+.|+++.|+...+++.+++.+.+ + | .+++|+|.+.. ..+++|+
T Consensus 6 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred EEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 3567888888776677777777766 2 1 25789987642 1249999
Q ss_pred ecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh
Q psy208 52 EQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP 130 (443)
Q Consensus 52 ~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~ 130 (443)
+|++.. ...++.+.+..+..... .. .+. ......+...++..+|+.+|+.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~-----------~~-~~~----------------~~~~~~~~~~~~~~~l~~~gl~~ 137 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTK-----------KV-CGV----------------NIIDWREMRVRAAMMLLRVGLKV 137 (510)
T ss_pred eecccccCCCcHHHHhhhcccccc-----------cc-ccc----------------cccCHHHHHHHHHHHHHHcCCCC
Confidence 998754 33455444321100000 00 000 00000123357888999999975
Q ss_pred hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEE
Q psy208 131 EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 131 ~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
..++++.+||||||| .+..++.+.|++ .+.|||+||||.+++..+||+|+
T Consensus 138 -~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~ 216 (510)
T PRK09700 138 -DLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYT 216 (510)
T ss_pred -CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 468999999999999 577777777643 46899999999999999999999
Q ss_pred EEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccc
Q psy208 182 HLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVE 261 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 261 (443)
+|++|++. +.|+++++.... .++.... .. .. .......+.
T Consensus 217 ~l~~G~i~-~~g~~~~~~~~~-----------------------~~~~~~~--~~---~~---------~~~~~~~~~-- 256 (510)
T PRK09700 217 VMKDGSSV-CSGMVSDVSNDD-----------------------IVRLMVG--RE---LQ---------NRFNAMKEN-- 256 (510)
T ss_pred EEECCEEe-eecchhhCCHHH-----------------------HHHHhcC--CC---cc---------ccccccccc--
Confidence 99999995 678887653210 0000000 00 00 000000000
Q ss_pred cccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--
Q psy208 262 VVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-- 339 (443)
Q Consensus 262 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-- 339 (443)
.....++++|+++|+++.|+ .+|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 257 ------~~~~~~~~~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~ 327 (510)
T PRK09700 257 ------VSNLAHETVFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327 (510)
T ss_pred ------cccCCCCcEEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEEC
Confidence 00011346899999999763 3899999999999999999999999999999999999999999988541
Q ss_pred ----------eEEEEeccCcc-cccccchhHHHHHHHhCC----------C---C--CHHHHHHHHhcCCCChhhhhccC
Q psy208 340 ----------LKFGYFSQHHV-DQLDMNLRCVQLLEAAFP----------G---K--PQEEYRRQLGGFGVSGDLALQFV 393 (443)
Q Consensus 340 ----------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~~~----------~---~--~~~~~~~~L~~~gl~~~~~~~~~ 393 (443)
..+||++|++. ..+....++.+++..... . . ....+.++++.+++..+..++++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 24899999742 234455667666542110 0 0 12346788999999645678999
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||||+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 408 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 408 TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999765
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-46 Score=393.26 Aligned_cols=347 Identities=18% Similarity=0.231 Sum_probs=244.5
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------------CceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------------HISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------------~~~i~~l~ 52 (443)
++.|+++.|+...+++.+++.+.+ + | .+++|+|.+.+ ...+||++
T Consensus 13 ~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 13 CARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred EEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 356777777766667777776666 1 1 25779997642 13589999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++.. ...++.+.+..... . ....+.++..+|..+|++.
T Consensus 93 q~~~~~~~~tv~e~l~~~~~---------------------~------------------~~~~~~~~~~~l~~~~l~~- 132 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLP---------------------K------------------RQASMQKMKQLLAALGCQL- 132 (510)
T ss_pred ccCccCCCCcHHHHhhcccc---------------------c------------------chHHHHHHHHHHHHcCCCc-
Confidence 99754 33455443321100 0 0012346788899999974
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.+++++.+||||||+ .++.|+.++|++ .+.|||+||||.+++..+||+|++
T Consensus 133 ~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~ 212 (510)
T PRK15439 133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISV 212 (510)
T ss_pred cccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 468999999999999 678888888754 367999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy208 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV 262 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (443)
|++|++. +.|+++.+..... .+ .+ .. . .... .+... .. .
T Consensus 213 l~~G~i~-~~g~~~~~~~~~~--~~----~~-------------~~---~--~~~~-------~~~~~---~~------~ 251 (510)
T PRK15439 213 MRDGTIA-LSGKTADLSTDDI--IQ----AI-------------TP---A--AREK-------SLSAS---QK------L 251 (510)
T ss_pred EECCEEE-EecChHHcCHHHH--HH----HH-------------hC---c--cccc-------ccccc---cc------c
Confidence 9999996 5799887743210 00 00 00 0 0000 00000 00 0
Q ss_pred ccccCC---CCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc
Q psy208 263 VLKFPD---TELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN 339 (443)
Q Consensus 263 ~~~~~~---~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~ 339 (443)
.+.++. ....++++|+++|+++ .+|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 252 ~~~~~~~~~~~~~~~~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~ 325 (510)
T PRK15439 252 WLELPGNRRQQAAGAPVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGK 325 (510)
T ss_pred cccccccccccCCCCceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCE
Confidence 000110 0112456899999983 1699999999999999999999999999999999999999999987542
Q ss_pred ------------eEEEEeccCcc-cccccchhHHHHHHHh------CC-CC--CHHHHHHHHhcCCCChhhhhccCCCCC
Q psy208 340 ------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA------FP-GK--PQEEYRRQLGGFGVSGDLALQFVGSLS 397 (443)
Q Consensus 340 ------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~------~~-~~--~~~~~~~~L~~~gl~~~~~~~~~~~LS 397 (443)
..++|++|++. ..+....++.+++... .. .. ....+.++|..+++.....++++.+||
T Consensus 326 ~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 405 (510)
T PRK15439 326 EINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLS 405 (510)
T ss_pred ECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCC
Confidence 25899999742 1233444555554211 10 11 123467889999996346789999999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 398 gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+||++++.+|+||||||||+|||+.+++.+.+.|.++
T Consensus 406 gG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 449 (510)
T PRK15439 406 GGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449 (510)
T ss_pred cHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=390.97 Aligned_cols=284 Identities=23% Similarity=0.250 Sum_probs=207.8
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
.+.++.++++.+|+++ .+++++.+||||||+ .+..|+.+.|+++ +.|||+
T Consensus 112 ~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii 190 (490)
T PRK10938 112 DPARCEQLAQQFGITA-LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVL 190 (490)
T ss_pred HHHHHHHHHHHcCCHh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3467889999999975 468999999999999 6788888888554 679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||||.+++..+||+|++|++|++. +.|+++.+..... . .+... . .
T Consensus 191 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~---------~--------------~~~~~--~---------~ 235 (490)
T PRK10938 191 VLNRFDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL---------V--------------AQLAH--S---------E 235 (490)
T ss_pred EeCCHHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh---------h--------------hhhhh--h---------h
Confidence 999999999999999999999996 4577655421100 0 00000 0 0
Q ss_pred HHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+.... .+...+... +.......++|+++|+++.|+ ++.+|+|+||+|.+|++++|+||||||||||+|+|+|
T Consensus 236 ~~~~~~--~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G 308 (490)
T PRK10938 236 QLEGVQ--LPEPDEPSA----RHALPANEPRIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308 (490)
T ss_pred ccCccc--cCccccccc----ccccCCCCceEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcC
Confidence 000000 000000000 000112356899999999996 4679999999999999999999999999999999999
Q ss_pred CCCC-CCceEEEcCc------------eEEEEeccCcccccccchhHHHHHHHh-------CCCCC---HHHHHHHHhcC
Q psy208 326 IISP-TAGTRTVHRN------------LKFGYFSQHHVDQLDMNLRCVQLLEAA-------FPGKP---QEEYRRQLGGF 382 (443)
Q Consensus 326 ~~~p-~~G~i~~~~~------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~-------~~~~~---~~~~~~~L~~~ 382 (443)
+.+| ++|+|.+.+. ..++|++|++........+..+.+... ..... .+.+..++..+
T Consensus 309 ~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (490)
T PRK10938 309 DHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL 388 (490)
T ss_pred CCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc
Confidence 8876 6999987531 248999997532122222333333211 01111 23567889999
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++..+..++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 389 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l 447 (490)
T PRK10938 389 GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL 447 (490)
T ss_pred CCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99743678999999999999999999999999999999999999999999999999875
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-46 Score=392.46 Aligned_cols=276 Identities=18% Similarity=0.252 Sum_probs=204.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++|+.+|+.....++++.+||||||+ .+..|+.+.|++ .+.|||+|
T Consensus 118 ~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviii 197 (500)
T TIGR02633 118 YLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYI 197 (500)
T ss_pred HHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3478889999999753336789999999999 677888887743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++..+ |....+... . .+.... ..
T Consensus 198 tHd~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~~~-------------~----------~~~~~~--~~----------- 240 (500)
T TIGR02633 198 SHKLNEVKAVCDTICVIRDGQHVAT-KDMSTMSED-------------D----------IITMMV--GR----------- 240 (500)
T ss_pred eCcHHHHHHhCCEEEEEeCCeEeee-cCcccCCHH-------------H----------HHHHHh--Cc-----------
Confidence 9999999999999999999998643 443322100 0 000000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
......+ .. ....++++|+++|++++|+ +++.+|+|+||+|.+|++++|+||||||||||+|+|+
T Consensus 241 --~~~~~~~---~~--------~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~ 307 (500)
T TIGR02633 241 --EITSLYP---HE--------PHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALF 307 (500)
T ss_pred --ccccccc---cc--------ccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHh
Confidence 0000000 00 0011345899999999983 2357999999999999999999999999999999999
Q ss_pred cCCCC-CCceEEEcC------------ceEEEEeccCcc-cccccchhHHHHHHHh----CC---CCC----HHHHHHHH
Q psy208 325 GIISP-TAGTRTVHR------------NLKFGYFSQHHV-DQLDMNLRCVQLLEAA----FP---GKP----QEEYRRQL 379 (443)
Q Consensus 325 G~~~p-~~G~i~~~~------------~~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~---~~~----~~~~~~~L 379 (443)
|+++| ++|+|.+.+ ...+||++|++. ..+....++.+++... +. ... ...+.+++
T Consensus 308 G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 387 (500)
T TIGR02633 308 GAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAI 387 (500)
T ss_pred CCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHH
Confidence 99985 899998753 124899999852 1234444555544211 10 111 23567889
Q ss_pred hcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 380 ~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 388 ~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 449 (500)
T TIGR02633 388 QRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449 (500)
T ss_pred HhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 99999644578999999999999999999999999999999999999999999999888765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=393.44 Aligned_cols=274 Identities=18% Similarity=0.227 Sum_probs=206.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|++. ..++++.+||||||| .+..++.+.|++ .+.|||+||
T Consensus 122 ~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~t 200 (506)
T PRK13549 122 LRAQKLLAQLKLDI-NPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYIS 200 (506)
T ss_pred HHHHHHHHHcCCCC-CcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 47888999999974 468999999999999 567777777744 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 247 (443)
||.+++..+||+|++|++|++. +.|+.+.+.... .++... ..
T Consensus 201 H~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~--~~------------ 242 (506)
T PRK13549 201 HKLNEVKAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMV--GR------------ 242 (506)
T ss_pred CcHHHHHHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhh--Cc------------
Confidence 9999999999999999999986 456644431100 000000 00
Q ss_pred hcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
......+. . . ...+.++|+++|++++|+ +++++|+|+||+|++|++++|+||||||||||+|+|+|
T Consensus 243 -~~~~~~~~---~-------~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~G 310 (506)
T PRK13549 243 -ELTALYPR---E-------P-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG 310 (506)
T ss_pred -Cccccccc---c-------c-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhC
Confidence 00000000 0 0 011346899999999994 23579999999999999999999999999999999999
Q ss_pred CCC-CCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHh----CCC----C---CHHHHHHHHh
Q psy208 326 IIS-PTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA----FPG----K---PQEEYRRQLG 380 (443)
Q Consensus 326 ~~~-p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~~----~---~~~~~~~~L~ 380 (443)
+++ |++|+|.+.+. ..++|++|++. ..+....++.+++... +.. . ..+.+.++++
T Consensus 311 l~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 390 (506)
T PRK13549 311 AYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQ 390 (506)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHH
Confidence 998 59999987531 24899999852 1234455666655321 110 1 1235778899
Q ss_pred cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 381 ~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 391 ~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 451 (506)
T PRK13549 391 RLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQL 451 (506)
T ss_pred hcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence 9999644678999999999999999999999999999999999999999999999998765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=389.24 Aligned_cols=280 Identities=22% Similarity=0.289 Sum_probs=207.7
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVV 166 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiV 166 (443)
...++.+++..+|+.. .+++++.+||||||| .++.|+.++|+++ +.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~~-~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLEN-ILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3457899999999975 468999999999999 6777888888655 8899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||+++++.+||+|+.|+++ .|.|..|...+..+ . .+..+...+.. . ..
T Consensus 268 sHd~~~l~~~~D~v~vl~~~-----~g~~g~~~~~~~~~-~--------------~i~~~~~~~~~----~----e~--- 316 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGE-----PGAYGVVSKPKGVR-V--------------GINEYLKGYLP----E----EN--- 316 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCC-----ccccceecchhHHH-H--------------hHHHHHHhcch----h----hh---
Confidence 99999999999999999753 23343332221110 0 00011110000 0 00
Q ss_pred HhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
. +... .+..+.++... ..+.++|+++|++++|+ + ..|+++||+|.+|++++|+||||||||||+|+|+
T Consensus 317 ~-~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~-~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~ 386 (590)
T PRK13409 317 M-RIRP-------EPIEFEERPPRDESERETLVEYPDLTKKLG-D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLA 386 (590)
T ss_pred h-hccc-------cCcceecCCCccccCCceEEEEcceEEEEC-C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 0000 00011111111 12456899999999995 3 3699999999999999999999999999999999
Q ss_pred cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 325 GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 325 G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
|+++|++|+|.+. ..++|++|++. +....++.+++....... ....+.++|..+++. +..++++.+||||||||
T Consensus 387 Gl~~p~~G~I~~~--~~i~y~~Q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~QR 461 (590)
T PRK13409 387 GVLKPDEGEVDPE--LKISYKPQYIK--PDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGELQR 461 (590)
T ss_pred CCCCCCceEEEEe--eeEEEeccccc--CCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHHHH
Confidence 9999999999875 57999999863 345567776664321111 233567889999996 67899999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 462 vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l 499 (590)
T PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRI 499 (590)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=388.91 Aligned_cols=271 Identities=16% Similarity=0.209 Sum_probs=201.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++..+|+.+|++. ..++++.+||||||| .++.|+.++|++ .+.|||+|
T Consensus 118 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiii 196 (501)
T PRK11288 118 NYEAREQLEHLGVDI-DPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYV 196 (501)
T ss_pred HHHHHHHHHHcCCCC-CcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 457888999999974 358899999999999 678888888754 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++.. .|+.+..... +. .......
T Consensus 197 tHd~~~~~~~~d~i~~l~~G~i~~---~~~~~~~~~~----------~~----------~~~~~~~-------------- 239 (501)
T PRK11288 197 SHRMEEIFALCDAITVFKDGRYVA---TFDDMAQVDR----------DQ----------LVQAMVG-------------- 239 (501)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEe---ecCccccCCH----------HH----------HHHHhcC--------------
Confidence 999999999999999999999863 2222210000 00 0000000
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
........ . .+...+.++++++|+++. .+++|+||+|.+|++++|+||||||||||+|+|+|+
T Consensus 240 -~~~~~~~~----------~-~~~~~~~~~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~ 302 (501)
T PRK11288 240 -REIGDIYG----------Y-RPRPLGEVRLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA 302 (501)
T ss_pred -CCcccccc----------c-cccCCCCcEEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC
Confidence 00000000 0 000113457999999842 489999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHhC-C---------CC--CHHHHHHHHhc
Q psy208 327 ISPTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAAF-P---------GK--PQEEYRRQLGG 381 (443)
Q Consensus 327 ~~p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~~-~---------~~--~~~~~~~~L~~ 381 (443)
++|++|+|.+.+. ..++|++|++. ..+....++.+++.... . .. ..+.+.++++.
T Consensus 303 ~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 382 (501)
T PRK11288 303 TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRS 382 (501)
T ss_pred CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHh
Confidence 9999999988531 35899999852 12344556666653210 0 00 12356789999
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..+..++++.+|||||||||+||++++.+|++|||||||+|||+.+++.+.++|.++
T Consensus 383 ~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 442 (501)
T PRK11288 383 LNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL 442 (501)
T ss_pred cCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999545678999999999999999999999999999999999999999999999998664
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=386.19 Aligned_cols=269 Identities=21% Similarity=0.288 Sum_probs=201.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiV 166 (443)
..++.++|+.+|+.+ ..++++.+||||||+ .+..++.+.|+ +.+.|||+|
T Consensus 119 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~ 197 (501)
T PRK10762 119 YAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYI 197 (501)
T ss_pred HHHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999985 468999999999999 56667665553 457799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|||.+++..+||+|++|++|++.. .|...+.... . ..+... ..
T Consensus 198 sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~------~-----------------~~~~~~--~~----------- 240 (501)
T PRK10762 198 SHRLKEIFEICDDVTVFRDGQFIA-EREVADLTED------S-----------------LIEMMV--GR----------- 240 (501)
T ss_pred eCCHHHHHHhCCEEEEEeCCEEEE-ecCcCcCCHH------H-----------------HHHHhc--CC-----------
Confidence 999999999999999999999864 4544332100 0 000000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+... ..+ . ++. ..+.++|+++|+++ ++|+++||+|.+|++++|+||||||||||+|+|+|+
T Consensus 241 --~~~~--~~~-----~--~~~--~~~~~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~ 301 (501)
T PRK10762 241 --KLED--QYP-----R--LDK--APGEVRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA 301 (501)
T ss_pred --Cccc--ccc-----c--ccc--CCCCcEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC
Confidence 0000 000 0 000 11346899999984 379999999999999999999999999999999999
Q ss_pred CCCCCceEEEcCc------------eEEEEeccCcc-cccccchhHHHHHHHh----CC---C-C----CHHHHHHHHhc
Q psy208 327 ISPTAGTRTVHRN------------LKFGYFSQHHV-DQLDMNLRCVQLLEAA----FP---G-K----PQEEYRRQLGG 381 (443)
Q Consensus 327 ~~p~~G~i~~~~~------------~~ig~~~Q~~~-~~l~~~~~~~~~~~~~----~~---~-~----~~~~~~~~L~~ 381 (443)
++|++|+|.+.+. ..+||++|++. ..+....++.+++... .. . . ..+.+.++++.
T Consensus 302 ~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 381 (501)
T PRK10762 302 LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRL 381 (501)
T ss_pred CCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHh
Confidence 9999999988541 24899999852 1234455666655321 10 0 1 12357788999
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.....++++.+|||||||||+||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 382 ~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 441 (501)
T PRK10762 382 FNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441 (501)
T ss_pred cCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence 999534678999999999999999999999999999999999999999999999999876
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=378.71 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=199.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++++.+|+.. ..++++.+||||||+ .+..||.++|++ .+.|||+||
T Consensus 113 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~t 191 (491)
T PRK10982 113 RDTKAIFDELDIDI-DPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYIS 191 (491)
T ss_pred HHHHHHHHHcCCCC-CccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46788899999975 468899999999999 677888887754 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQL 247 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l 247 (443)
||.+++..+||+|++|++|++.. .|+-...... . ..+..- . .
T Consensus 192 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~~~-------------~----------~~~~~~--~-~----------- 233 (491)
T PRK10982 192 HKMEEIFQLCDEITILRDGQWIA-TQPLAGLTMD-------------K----------IIAMMV--G-R----------- 233 (491)
T ss_pred cCHHHHHHhCCEEEEEECCEEEe-ecChhhCCHH-------------H----------HHHHHh--C-C-----------
Confidence 99999999999999999999863 4553322100 0 000000 0 0
Q ss_pred hcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 248 ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
......+. +. ...++++|+++|+++.| +++|+++||+|++|+++||+||||||||||+|+|+|+.
T Consensus 234 -~~~~~~~~----------~~-~~~~~~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 234 -SLTQRFPD----------KE-NKPGEVILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred -Cccccccc----------cc-CCCCCcEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 00000000 00 01134689999999974 35999999999999999999999999999999999999
Q ss_pred CCCCceEEEcCc------------eEEEEeccCccc-ccccchhH-----HHHHHHhC---C--CC--CHHHHHHHHhcC
Q psy208 328 SPTAGTRTVHRN------------LKFGYFSQHHVD-QLDMNLRC-----VQLLEAAF---P--GK--PQEEYRRQLGGF 382 (443)
Q Consensus 328 ~p~~G~i~~~~~------------~~ig~~~Q~~~~-~l~~~~~~-----~~~~~~~~---~--~~--~~~~~~~~L~~~ 382 (443)
+|++|+|.+++. ..++|++|++.. .+....+. .+.+.... . .. ....+..+++.+
T Consensus 299 ~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 378 (491)
T PRK10982 299 EKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM 378 (491)
T ss_pred cCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc
Confidence 999999988641 128999997421 12222222 22221111 1 10 123467888999
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++..+..++++.+|||||||||+||++++.+|+||||||||+|||+.+++.+.+.|.++
T Consensus 379 ~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l 437 (491)
T PRK10982 379 RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL 437 (491)
T ss_pred CccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHH
Confidence 98544578999999999999999999999999999999999999999999999988654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=335.41 Aligned_cols=294 Identities=20% Similarity=0.309 Sum_probs=227.1
Q ss_pred HHHHHHHHhhcccCCHHHHHHHHHHhCCCC--hhhhhccCCCCChHHHH-----------------------------HH
Q psy208 100 LTQVFAELEAIEADKAPARASVILAGLGFT--PEMQKRATKHFSGGWRK-----------------------------MA 148 (443)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~--~~~~~~~~~~LSGGqr~-----------------------------~~ 148 (443)
+.+....+..+....+++|+-+.|..+|++ +..++..+++||||||| .-
T Consensus 116 i~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQ 195 (534)
T COG4172 116 LAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQ 195 (534)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHH
Confidence 344444555566677888999999999997 35678999999999999 23
Q ss_pred HHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 149 IIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFI 227 (443)
Q Consensus 149 i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 227 (443)
|..|..-| ++++.++++||||...+..+||+|++|..|++.. .|...... ...+..|.++.
T Consensus 196 IL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF-------~~PqHpYTr~L---------- 257 (534)
T COG4172 196 ILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLF-------AAPQHPYTRKL---------- 257 (534)
T ss_pred HHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHh-------hCCCChHHHHH----------
Confidence 33444445 5789999999999999999999999999999975 34433221 12222222210
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCC----------Cceeeeee
Q psy208 228 DTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPG----------KPILTNVC 297 (443)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~----------~~il~~vs 297 (443)
++. .|...+ ++.+...+++++.+++.+.|+-. ..+++++|
T Consensus 258 -------------------l~a----eP~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~is 307 (534)
T COG4172 258 -------------------LAA----EPSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGIS 307 (534)
T ss_pred -------------------Hhc----CCCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccce
Confidence 000 111000 11122346799999999999621 24889999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEEEEeccCcccccccchhHHHHH
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKFGYFSQHHVDQLDMNLRCVQLL 363 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ig~~~Q~~~~~l~~~~~~~~~~ 363 (443)
|++.+|+.+||||.+|||||||-.+|.+++++. |+|.+.+ +..+-.+||+|...+++..++.+.+
T Consensus 308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII 386 (534)
T COG4172 308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQII 386 (534)
T ss_pred eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHh
Confidence 999999999999999999999999999999887 9998753 2357789999988899988887776
Q ss_pred HHhC----CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHH
Q psy208 364 EAAF----PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435 (443)
Q Consensus 364 ~~~~----~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~ 435 (443)
.... +.. .++++.+.|..+|+++...+++|++.|||||||++||||++.+|.+++|||||+.||...+.++.
T Consensus 387 ~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv 466 (534)
T COG4172 387 EEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVL 466 (534)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHH
Confidence 5422 111 24567889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccc
Q psy208 436 KAINKYT 442 (443)
Q Consensus 436 ~~L~~~~ 442 (443)
+.|++..
T Consensus 467 ~LLr~LQ 473 (534)
T COG4172 467 DLLRDLQ 473 (534)
T ss_pred HHHHHHH
Confidence 9998753
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=317.72 Aligned_cols=166 Identities=28% Similarity=0.521 Sum_probs=144.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEec
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~ 346 (443)
++|+++|++++|++. ++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .+|||+|
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 579999999999644 7999999999999999999999999999999999999999999987542 5799999
Q ss_pred cCcccccccchhHHHHHHHhC-C---------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-P---------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~---------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|..........++.+.+.... . ..+.+.+.+.|+.+|+. +..++++++|||||+|||.|||||+++|++
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l 160 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDL 160 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCE
Confidence 975444455667777765421 1 11246789999999997 789999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||+++|+.++..+.+.|.+++
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL~~l~ 186 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLLKELR 186 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=307.93 Aligned_cols=163 Identities=28% Similarity=0.436 Sum_probs=144.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++||+++|+ +..+|++||++|.+||+++|+||+|||||||||||.|+..|++|+|.+++. .++
T Consensus 1 ~mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 1 MMIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred CeEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 3799999999996 678999999999999999999999999999999999999999999998761 258
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
|++||+. ++.+..|+++++... ..+.+ ++.+.++|+++|+. +..+.+|.+|||||||||+|||||+.+|+
T Consensus 80 GmVFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 80 GMVFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred Ceecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 9999985 578899999987542 12223 34567899999996 68899999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++|||||+|||+.+..+.+.+++.
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~L 182 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDL 182 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999888764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=298.67 Aligned_cols=162 Identities=28% Similarity=0.455 Sum_probs=142.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccC
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQH 348 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~ 348 (443)
.+++++++++.|+ ...+|+|+||+|.+||+++|+||+|||||||||+|+|+.+|++|+|.+.+. ..++|++|+
T Consensus 2 ~~l~i~~v~~~f~-~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~ 80 (248)
T COG1116 2 ALLEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE 80 (248)
T ss_pred ceEEEEeeEEEeC-ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc
Confidence 4689999999996 478999999999999999999999999999999999999999999988653 479999998
Q ss_pred cccccccchhHHHHHHHhCC------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFP------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+ .+.+..|+.+++.-... ......+.++|+.+|+. +..+++|++|||||||||+|||||+.+|++|+||||
T Consensus 81 ~--~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEP 157 (248)
T COG1116 81 D--ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEP 157 (248)
T ss_pred C--cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 6 46778888888743211 11234688999999997 588999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcc
Q psy208 423 TNHLDIETIEALGKAINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~ 440 (443)
+++||..++..+.+.|.+
T Consensus 158 FgALDalTR~~lq~~l~~ 175 (248)
T COG1116 158 FGALDALTREELQDELLR 175 (248)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 999999999999887754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=304.58 Aligned_cols=163 Identities=31% Similarity=0.496 Sum_probs=138.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++|+ ++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.+++. ..++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 689999999996 689999999999999999999999999999999999999999999998752 36999
Q ss_pred eccCcccccccchhHHHHHHH-h------CCCCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-A------FPGKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~------~~~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||.+. .....++.+.+.. . +...+ .+.+...|+.+|+. +..++++.+|||||||||.|||||+++|
T Consensus 81 vpQ~~~--~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iArALaQ~~ 157 (258)
T COG1120 81 VPQSPS--APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIARALAQET 157 (258)
T ss_pred eccCCC--CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHHHHHhcCC
Confidence 999863 3334455554432 1 11122 23567789999986 6889999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|+|||||++||+..+-.+++.++++.
T Consensus 158 ~iLLLDEPTs~LDi~~Q~evl~ll~~l~ 185 (258)
T COG1120 158 PILLLDEPTSHLDIAHQIEVLELLRDLN 185 (258)
T ss_pred CEEEeCCCccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998753
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=294.71 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=148.8
Q ss_pred CeEEEeeeEEEeCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------c
Q psy208 275 PILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------N 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~---~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~ 339 (443)
++|+++|+++.|+.++ +++++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.+++ .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999997543 499999999999999999999999999999999999999999999875 2
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCC----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
..+.++||+|...+++..++...+..... ....+++.++|..+|+....++++|.+|||||+||++|||||..+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 45889999998889988887777654322 12345688999999999999999999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+..+..+.+.|.+.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l 187 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLEL 187 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=288.17 Aligned_cols=164 Identities=27% Similarity=0.435 Sum_probs=143.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ce
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NL 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 340 (443)
.+|+++||++.|++++.+|+||||+|++||+++|||++|||||||||+|.|+.+|++|+|.+.+ +.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 4799999999998788999999999999999999999999999999999999999999998864 24
Q ss_pred EEEEeccCcccccccchhHHHHHHH--------------hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEA--------------AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
.+||++|.+ .+-+..++++++.. .++......+...|+++|+. +.+.++.++|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 699999986 46666777776542 12233345677889999996 67889999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||+++|+++|.|||++.|||.+.+.+++.|++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i 193 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDI 193 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=288.54 Aligned_cols=164 Identities=30% Similarity=0.453 Sum_probs=140.5
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
+++++||++.|..+ ..+|+++||+|++||+++|+||+||||||||++|.|+.+|++|.|.+.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 46899999999643 3699999999999999999999999999999999999999999988764
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+..+||++|+. .+-+..|+.+++.- .+... ....+..++..+|+.....+++|.+|||||||||+|||||+
T Consensus 81 R~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 24699999985 46677888888752 22222 23456778888999755555899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|+.||||.+||.++.+.+.+.|.++
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~ 188 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLREL 188 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=277.62 Aligned_cols=164 Identities=27% Similarity=0.387 Sum_probs=143.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~ 341 (443)
||+++||++.|++++++|+||||+|++||++-|+||+|||||||||+|++..+|+.|+|++.+ +.+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 589999999999887899999999999999999999999999999999999999999998753 246
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
||+++|+. .+-+..+++++++.. ..+. ...++.+.|+.+|+. +..+..|.+|||||||||+||||++.+|.
T Consensus 81 IGvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 99999986 456678888887532 1222 245677889999996 57788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+||.||||.+|||+....+++.+.+++
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeein 184 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEIN 184 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHh
Confidence 999999999999999999999987764
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=286.76 Aligned_cols=163 Identities=30% Similarity=0.458 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------e
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~ 340 (443)
+|+++|++++|+++ +++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 47899999999643 46999999999999999999999999999999999999999999987541 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++.+|||||||||+||+||+.+|
T Consensus 81 ~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQDHR--LLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecCcc--ccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5899999863 34445666665421 1111 234577889999986 5678899999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~ 184 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEF 184 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=294.23 Aligned_cols=163 Identities=31% Similarity=0.402 Sum_probs=141.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
||++++|+|.|+.. ..+++||||+|++||++||||.+|||||||+|+|.++..|++|+|.+++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 58999999999742 4699999999999999999999999999999999999999999999865
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+.+||++||++ .+-...|++++++.. ..+. ..+++.++|+.+|+. +..+++|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 24699999986 355567888776421 1122 235677899999997 7889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++||+|||||+|||++.+.+.+.|++.
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~I 187 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDI 187 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=281.76 Aligned_cols=165 Identities=28% Similarity=0.444 Sum_probs=143.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
.++|++++|+++|+ ++.+++|+||+|++|++++|+||+|||||||||+|.|+++|++|+|.+.+.
T Consensus 6 ~~~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 46899999999995 688999999999999999999999999999999999999999999988641
Q ss_pred eEEEEeccCcccccccchhHHHHHHH---hCCCCCHHHH----HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKPQEEY----RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~----~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
.++|+++|.. .+....++.+++.- .....++..+ ..-|+.+|+.+...++.|++|||||++|++||||++.
T Consensus 85 ~r~GvlFQ~g--ALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAial 162 (263)
T COG1127 85 KRMGVLFQQG--ALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIAL 162 (263)
T ss_pred hheeEEeecc--ccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhc
Confidence 3599999985 46677888888753 2233344443 3457889999887999999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|++||||+||||.+...+.+.|++.
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L 191 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIREL 191 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999888764
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=297.25 Aligned_cols=165 Identities=31% Similarity=0.456 Sum_probs=142.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGY 344 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~ 344 (443)
.+++++||++.|++++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.+.+ ...+||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3588999999996347899999999999999999999999999999999999999999998864 135999
Q ss_pred eccCcccccccchhHHHHHH---HhCCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLE---AAFPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~---~~~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +.+..|+.+++. ..+.. ...+.+..++..+|+.. ..+++++.||+||||||.||+||+.+|++||
T Consensus 83 ~~~~~~--~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 83 VPQEPS--LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred EccCCC--CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 999874 566777766653 22222 12457889999999986 4478899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHcccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||||+.++..+.+.|+++.
T Consensus 160 LDEPt~GLDp~~~~~~~~~l~~l~ 183 (293)
T COG1131 160 LDEPTSGLDPESRREIWELLRELA 183 (293)
T ss_pred ECCCCcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999998763
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=281.92 Aligned_cols=162 Identities=31% Similarity=0.453 Sum_probs=136.0
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEeccCc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQHH 349 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q~~ 349 (443)
+++|++++|++++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999963267999999999999999999999999999999999999999999988652 2589999985
Q ss_pred ccccccchhHHHHHHHhC--CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 350 VDQLDMNLRCVQLLEAAF--PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
...+. ..++.+++.... .......+.++++.+++. +..++++.+||||||||++|||+++.+|++|||||||++||
T Consensus 81 ~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQLF-TDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhhh-hccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 32222 346666664321 122335678899999996 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 159 ~~~~~~l~~~l~~~ 172 (205)
T cd03226 159 YKNMERVGELIREL 172 (205)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=287.73 Aligned_cols=166 Identities=33% Similarity=0.449 Sum_probs=141.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 342 (443)
+++.++|++|+|+++.++++++||+|.+|++++|+|+||||||||+++|+|+++|++|.|.+.+ ..++
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 4789999999997656899999999999999999999999999999999999999999997654 2359
Q ss_pred EEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|+|..++.. .++.+.+.-.. .+.. +.++..+|..+|+. +..++++..|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 9999999766543 45555543211 1122 34577889999997 468999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||++||+.++..+.+.+.+++
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~ 185 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLK 185 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=289.85 Aligned_cols=164 Identities=28% Similarity=0.393 Sum_probs=140.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEecc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQ 347 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q 347 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 10 ~~~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 10 GTPLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCcEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 46799999999996 468999999999999999999999999999999999999999999987542 35899999
Q ss_pred CcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
++. +....++.+++...........+..++..+++. +..++++.+||||||||++||++|+.+|++|||||||++||
T Consensus 89 ~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD 165 (257)
T PRK11247 89 DAR--LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD 165 (257)
T ss_pred Ccc--CCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 863 344457777765322222245677889999996 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.++..+.+.|.++
T Consensus 166 ~~~~~~l~~~L~~~ 179 (257)
T PRK11247 166 ALTRIEMQDLIESL 179 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=284.86 Aligned_cols=163 Identities=32% Similarity=0.547 Sum_probs=136.3
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------ceEEEEeccCccc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------NLKFGYFSQHHVD 351 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~ig~~~Q~~~~ 351 (443)
+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...++|++|++..
T Consensus 1 ~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 1 EVEDLTVSYG-GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred CcccceeEEC-CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 3689999996 46799999999999999999999999999999999999999999999865 2459999998642
Q ss_pred ccccchhHHHHHHHhCCC----------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 352 QLDMNLRCVQLLEAAFPG----------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~----------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
......++.+++...... ...+.+..++..+++. +..++++.+||||||||++||+||+.+|++|||||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 158 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDE 158 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 212235677776432110 1134567889999996 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcccc
Q psy208 422 PTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++||+.+++.+.+.|.++.
T Consensus 159 Pt~~LD~~~~~~l~~~l~~~~ 179 (213)
T cd03235 159 PFAGVDPKTQEDIYELLRELR 179 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHH
Confidence 999999999999999998763
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=283.16 Aligned_cols=163 Identities=29% Similarity=0.430 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++|++++|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 4789999999953467999999999999999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++. +....++.+++... .... ....+..+++.+++. +..++++.+|||||||||+||++|+.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDFR--LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecChh--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 899999863 33445666655421 1111 134567889999996 46788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~ 183 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRL 183 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999875
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=316.29 Aligned_cols=163 Identities=39% Similarity=0.626 Sum_probs=139.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.+|+++|++++|+ ++++|+++||+|.+|+++||||+||||||||||+|+|.+.|++|+|....+.+++|++|++. ++
T Consensus 2 ~~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~--~~ 78 (530)
T COG0488 2 SMITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP--LD 78 (530)
T ss_pred ceEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC--cC
Confidence 4799999999994 68999999999999999999999999999999999999999999999999899999999874 33
Q ss_pred cchhHHHHHHHhC-----------------------------------C-CCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 355 MNLRCVQLLEAAF-----------------------------------P-GKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 355 ~~~~~~~~~~~~~-----------------------------------~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
...++.+.+.... . ...+.++..+|..+|++.. ++++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 3333333221100 0 0123567788899999754 899999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.||+||++|+.+|++|||||||||||.+++.+|++.|.+|+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~ 200 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP 200 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999886
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=283.80 Aligned_cols=161 Identities=29% Similarity=0.429 Sum_probs=135.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred CeeeeeEEEeC-CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 47899999996 468999999999999999999999999999999999999999999987542 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ..+.+.+++..+++. +..++++.+||||||||++||++|+.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDE 156 (213)
T cd03259 80 DYA--LFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDE 156 (213)
T ss_pred chh--hccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 34445666665321 1111 123567889999996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.++..+.+.|.++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 157 PLSALDAKLREELREELKEL 176 (213)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-36 Score=282.22 Aligned_cols=162 Identities=31% Similarity=0.457 Sum_probs=135.4
Q ss_pred EEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 277 LQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
|+++||+++|++. +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999642 5799999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...++|++|++. +....++.+++... .... ....+..++..+|+. ...++++.+|||||||||+||++|+.
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQSFN--LLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeeccc--cCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 125899999863 33445666665421 1111 124567889999996 45688999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLREL 186 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=285.25 Aligned_cols=161 Identities=27% Similarity=0.422 Sum_probs=135.3
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ceEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NLKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~~i 342 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ ...+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 47899999996 56799999999999999999999999999999999999999999998753 1248
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++|++. +....++.+++... ..... ...+..++..+++. +..++++.+|||||||||+||++|+.+|+
T Consensus 80 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 156 (235)
T cd03261 80 GMLFQSGA--LFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPE 156 (235)
T ss_pred EEEccCcc--cCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999863 34455666665421 11112 23467789999996 45688999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred EEEecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=284.28 Aligned_cols=165 Identities=27% Similarity=0.435 Sum_probs=138.2
Q ss_pred CCeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------
Q psy208 274 PPILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------- 339 (443)
.++|+++||++.|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 82 (233)
T PRK11629 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKA 82 (233)
T ss_pred CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHH
Confidence 3579999999999632 46999999999999999999999999999999999999999999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..++|++|++. +....++.+++... +... ....+.+++..+|+. +..++++.+||||||||++||++
T Consensus 83 ~~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~a 159 (233)
T PRK11629 83 ELRNQKLGFIYQFHH--LLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARA 159 (233)
T ss_pred HHHhccEEEEecCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHH
Confidence 35999999863 34445666665421 1111 123567889999996 56788999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (233)
T PRK11629 160 LVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191 (233)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=282.81 Aligned_cols=163 Identities=29% Similarity=0.423 Sum_probs=143.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
||+++||||.|+ ++.+++|+||+|.+|++++++||+||||||+||||.+++.|++|+|.+++ +.+|||
T Consensus 1 MI~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred CceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 589999999996 67899999999999999999999999999999999999999999999864 246999
Q ss_pred eccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+-|.. .+.+..|+.+++.-. ..+++ .+++.++|..+|+.+ ++.+++|++|||||+|||.+||||+.+|++|
T Consensus 80 viQqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~il 157 (309)
T COG1125 80 VIQQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPIL 157 (309)
T ss_pred hhhhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeE
Confidence 99975 477888888887532 22333 346788999999976 6899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+++|||.++..|.+.+.+.
T Consensus 158 LMDEPFgALDpI~R~~lQ~e~~~l 181 (309)
T COG1125 158 LMDEPFGALDPITRKQLQEEIKEL 181 (309)
T ss_pred eecCCccccChhhHHHHHHHHHHH
Confidence 999999999999999999887653
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=281.95 Aligned_cols=162 Identities=31% Similarity=0.446 Sum_probs=135.6
Q ss_pred EEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~ig~~~Q 347 (443)
|+++|++++|++. +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 4789999999632 5799999999999999999999999999999999999999999998854 236899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+..++..+++. +..++++..||||||||++||+||+.+|++|||||
T Consensus 81 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QDA--LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred ccc--cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 863 33445666655321 1111 134567889999996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~ 177 (220)
T cd03293 158 PFSALDALTREQLQEELLDI 177 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=285.11 Aligned_cols=164 Identities=29% Similarity=0.493 Sum_probs=139.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++.....
T Consensus 3 ~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccc
Confidence 4799999999996 467999999999999999999999999999999999999999999998876789999998632222
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++.+++.. .+......+..+++.+++. +..++++..||||||||++||++++.+|++|||||||++||+.++..+
T Consensus 82 l~~~~~~~~~~-~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 159 (251)
T PRK09544 82 LPLTVNRFLRL-RPGTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVAL 159 (251)
T ss_pred cChhHHHHHhc-cccccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 22344444321 2223456678889999986 567889999999999999999999999999999999999999999999
Q ss_pred HHHHccc
Q psy208 435 GKAINKY 441 (443)
Q Consensus 435 ~~~L~~~ 441 (443)
.+.|.++
T Consensus 160 ~~~L~~~ 166 (251)
T PRK09544 160 YDLIDQL 166 (251)
T ss_pred HHHHHHH
Confidence 9998764
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=281.62 Aligned_cols=161 Identities=28% Similarity=0.368 Sum_probs=135.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 57899999996 468999999999999999999999999999999999999999999987541 2589999
Q ss_pred cCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.. ..... ..+.+..+++.+++. +..++++.+||||||||++||+|++.+|++||||
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD 156 (220)
T cd03265 80 QDLS--VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD 156 (220)
T ss_pred CCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9863 3444566665532 11111 134567889999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 157 EPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred CCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=280.67 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=135.9
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|+++ +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999632 46999999999999999999999999999999999999999999987531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++..|||||||||+||++++
T Consensus 81 ~~~~i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQFHH--LLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 35999999853 33445666665321 1111 123567889999996 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 187 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=274.68 Aligned_cols=161 Identities=26% Similarity=0.428 Sum_probs=137.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++||++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 47899999996 467999999999999999999999999999999999999999999987531 2589999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++. +....++.+++.........+.+..++..+++. ...++++.+||||||||++||++++.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 80 HAPG--IKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred cccc--cCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 8753 344556777664322222456678889999986 4568899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.++
T Consensus 157 D~~~~~~l~~~l~~~ 171 (201)
T cd03231 157 DKAGVARFAEAMAGH 171 (201)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999765
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=276.29 Aligned_cols=162 Identities=25% Similarity=0.389 Sum_probs=137.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~ 79 (204)
T PRK13538 1 MLEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYL 79 (204)
T ss_pred CeEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEe
Confidence 478999999996 467999999999999999999999999999999999999999999987642 248899
Q ss_pred ccCcccccccchhHHHHHHHh--CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|.+. +....++.+++... ... .....+..+++.+|+. +..++++.+||||||||++||+|++.+|++||||||
T Consensus 80 ~~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 156 (204)
T PRK13538 80 GHQPG--IKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEP 156 (204)
T ss_pred CCccc--cCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 98752 44455666665421 111 2345678899999996 457889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 157 t~~LD~~~~~~l~~~l~~~ 175 (204)
T PRK13538 157 FTAIDKQGVARLEALLAQH 175 (204)
T ss_pred CccCCHHHHHHHHHHHHHH
Confidence 9999999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=275.92 Aligned_cols=161 Identities=30% Similarity=0.421 Sum_probs=137.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 47899999995 568999999999999999999999999999999999999999999988642 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
++. +....++.+++... ........+..+++.+++. +..++++.+|||||||||+||++++.+|++|||||||++
T Consensus 80 ~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 156 (208)
T cd03268 80 APG--FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156 (208)
T ss_pred CCc--cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 853 44456777665321 1222455678889999986 467889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 157 LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 157 LDPDGIKELRELILSL 172 (208)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=292.99 Aligned_cols=163 Identities=26% Similarity=0.372 Sum_probs=142.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
..|+++||++.|++.. +++++||+|..||+++|+||||||||||||+|+|+++|++|+|.++++ ..++++
T Consensus 2 ~~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 2 AELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred cEEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 3689999999996433 999999999999999999999999999999999999999999998752 369999
Q ss_pred ccCcccccccchhHHHHHHHhCC--C----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFP--G----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~--~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
||+. .+.+..|+.+++..... + ..++++.+..+.+++. +.++++|.+|||||||||+||||++.+|++++|
T Consensus 81 FQ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 81 FQNY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred eCCc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 9985 47888899998864221 1 2345678888999996 688999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++||...+..+...|++.
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~l 179 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKL 179 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHH
Confidence 9999999999999998888763
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=291.00 Aligned_cols=164 Identities=27% Similarity=0.387 Sum_probs=139.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.++|+++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 5 ~~~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig 83 (306)
T PRK13537 5 VAPIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVG 83 (306)
T ss_pred CceEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEE
Confidence 35799999999996 568999999999999999999999999999999999999999999988531 3599
Q ss_pred EeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++.. ...... ...+..+++.+++. ...+++++.||||||||++||+||+.+|++|
T Consensus 84 ~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 84 VVPQFDN--LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEeccCc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 9999863 4455677666542 122222 23456788899986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||+|||+.++..+.+.|+++
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l 184 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSL 184 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=277.91 Aligned_cols=161 Identities=23% Similarity=0.354 Sum_probs=135.3
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred CEEEeeEEEEC-CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 47899999996 468999999999999999999999999999999999999999999987542 25899999
Q ss_pred CcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... ..... .+.+..++..+|+. +..++++.+||||||||++||++++.+|++|||||
T Consensus 80 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDE 156 (213)
T cd03301 80 NYA--LYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDE 156 (213)
T ss_pred Chh--hccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 34455666665421 11111 23466788999986 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 157 PLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=278.69 Aligned_cols=166 Identities=25% Similarity=0.431 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|++. .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999643 27999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHH---hCC-CCCH---HH-HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEA---AFP-GKPQ---EE-YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~-~~~~---~~-~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+....++.+++.. ... .... .. +..++..+++.....++++.+||||||||++|||++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 25899999863223444566665532 111 1111 11 236788899854567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKL 191 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=279.51 Aligned_cols=163 Identities=29% Similarity=0.451 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4789999999943467999999999999999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++. +.+..++.+++... ..... ...+..+++.+++. +..++++.+||||||||++||+|++.+|+
T Consensus 81 i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDHH--LLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCcc--ccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 899999863 33445666665421 11112 22456788999986 46788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~ 183 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEF 183 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998865
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=277.60 Aligned_cols=161 Identities=26% Similarity=0.434 Sum_probs=135.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccCc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHH 349 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~~ 349 (443)
|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 47899999996 567999999999999999999999999999999999999999999988642 3589999986
Q ss_pred ccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
. +....++.+++... .... ..+.+.+++..+++. ...++++.+||||||||++||++++.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~ 156 (210)
T cd03269 80 G--LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156 (210)
T ss_pred c--CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 34445666655321 1111 134567889999986 5678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 157 ~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 157 SGLDPVNVELLKDVIREL 174 (210)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=277.81 Aligned_cols=162 Identities=30% Similarity=0.395 Sum_probs=135.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~i 342 (443)
|+++|+++.|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964467999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++. +....++.+++... .... ..+.+..++..+|+. ...++++.+||||||||++||++++.+|++
T Consensus 81 ~~v~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQDFR--LLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecCch--hccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 99999863 34445666665421 1111 123567889999986 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=279.90 Aligned_cols=164 Identities=27% Similarity=0.418 Sum_probs=137.3
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
++|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 579999999999642 25999999999999999999999999999999999999999999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++. +....++.+++... +... ..+.+.+++..+++. +..++++..||||||||++||++|
T Consensus 85 ~~~~~i~~~~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 85 LRAKHVGFVFQSFM--LIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHhheEEEEEcccc--cCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHH
Confidence 35999999863 34445666665321 1111 134577889999996 567889999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 192 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=278.34 Aligned_cols=162 Identities=28% Similarity=0.414 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCC----ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eE
Q psy208 276 ILQLSEVNFEYVPGK----PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~----~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ 341 (443)
+|+++|++++|++ + ++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~v~~~~~~-~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (218)
T cd03266 1 MITADALTKRFRD-VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79 (218)
T ss_pred CeEEEEEEEecCC-CCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhh
Confidence 4789999999964 4 7999999999999999999999999999999999999999999988541 25
Q ss_pred EEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++ .+....++.+++.. ..... ....+.++++.+|+. +..++++.+||||||||++||+|++.+|+
T Consensus 80 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (218)
T cd03266 80 LGFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPP 156 (218)
T ss_pred EEEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCC
Confidence 89999986 34444566666532 11111 134567789999985 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 illlDEPt~~LD~~~~~~l~~~l~~~ 182 (218)
T cd03266 157 VLLLDEPTTGLDVMATRALREFIRQL 182 (218)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=280.87 Aligned_cols=162 Identities=27% Similarity=0.415 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~ 80 (239)
T cd03296 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVF 80 (239)
T ss_pred EEEEEeEEEEEC-CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEe
Confidence 489999999996 467999999999999999999999999999999999999999999987541 2589999
Q ss_pred cCcccccccchhHHHHHHHhC--CCC----C----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF--PGK----P----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~--~~~----~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++. +....++.+++.... ... . .+.+..++..+++. ...++++.+|||||||||+||+||+.+|++
T Consensus 81 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~l 157 (239)
T cd03296 81 QHYA--LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKV 157 (239)
T ss_pred cCCc--ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9863 344456666654211 110 1 23456789999985 567889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~ 182 (239)
T cd03296 158 LLLDEPFGALDAKVRKELRRWLRRL 182 (239)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=284.82 Aligned_cols=162 Identities=30% Similarity=0.417 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHH 349 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~ 349 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 ml~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~ 79 (255)
T PRK11248 1 MLQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE 79 (255)
T ss_pred CEEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC
Confidence 478999999996 467999999999999999999999999999999999999999999988542 2489999985
Q ss_pred ccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
. +....++.+++... ..... ...+.+++..+|+. ...++++.+|||||||||+||++|+.+|++|||||||
T Consensus 80 ~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt 156 (255)
T PRK11248 80 G--LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156 (255)
T ss_pred c--cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3 33445666665421 11111 23577889999996 4678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 157 ~~LD~~~~~~l~~~L~~~ 174 (255)
T PRK11248 157 GALDAFTREQMQTLLLKL 174 (255)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999999765
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=283.22 Aligned_cols=163 Identities=29% Similarity=0.429 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~ 341 (443)
+|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 4789999999962467999999999999999999999999999999999999999999987531 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
++|++|++. +....++.+++.... .......+.++++.+++. ...++++.+|||||||||+||
T Consensus 81 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHYN--LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCCc--ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 899999853 344456666654211 011133567789999985 567889999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 191 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRI 191 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=295.60 Aligned_cols=164 Identities=26% Similarity=0.384 Sum_probs=144.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~ 344 (443)
.+.|+++||+++|+ +..+++|+||+|.+||+++|+||||||||||||+|+|+..|++|+|.+++ +..+|+
T Consensus 3 ~~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~ 81 (352)
T COG3842 3 KPALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGM 81 (352)
T ss_pred CceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccce
Confidence 35799999999996 67899999999999999999999999999999999999999999999864 246999
Q ss_pred eccCcccccccchhHHHHHHHhCC--C-CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--G-KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~-~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+||+. .+++.+++.+++..... . .. .+.+.++|+.+++. +..+++|++|||||+|||+|||||+.+|++|
T Consensus 82 VFQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vL 158 (352)
T COG3842 82 VFQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVL 158 (352)
T ss_pred eecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchh
Confidence 99985 47888999998764322 1 12 24678899999997 5889999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||.++||..-++.+...|++.
T Consensus 159 LLDEPlSaLD~kLR~~mr~Elk~l 182 (352)
T COG3842 159 LLDEPLSALDAKLREQMRKELKEL 182 (352)
T ss_pred hhcCcccchhHHHHHHHHHHHHHH
Confidence 999999999999999999887753
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=277.96 Aligned_cols=163 Identities=33% Similarity=0.471 Sum_probs=135.7
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
|+++||++.|+++ +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 5789999999642 67999999999999999999999999999999999999999999987542 248999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++... ..... .+.+.+++..+++. +..++++.+||||||||++||++++.+|++|||
T Consensus 81 ~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFDA--LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcCC--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99853 34445666655321 11111 24567889999985 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||||++||+.+++.+.+.|.++.
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~ 180 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVR 180 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998753
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=297.15 Aligned_cols=163 Identities=24% Similarity=0.335 Sum_probs=140.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 6899999999943568999999999999999999999999999999999999999999988642 3599999
Q ss_pred cCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++..... ... ...+.+++..+|+. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 986 35667788887753221 112 24567889999996 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l 180 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRL 180 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=289.51 Aligned_cols=163 Identities=27% Similarity=0.382 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGY 344 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~ 344 (443)
.+|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+ ...+||
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 3 VAIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred cEEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 4799999999996 56799999999999999999999999999999999999999999998753 235999
Q ss_pred eccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +....++.+++.. ...... ...+..+++.+++. +..++++.+|||||||||+||+||+.+|++||
T Consensus 82 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (303)
T TIGR01288 82 VPQFDN--LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLI 158 (303)
T ss_pred Eecccc--CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 4445566666532 111122 13456788899986 56788999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||+|||+.+++.+.+.|.++
T Consensus 159 LDEPt~gLD~~~~~~l~~~l~~~ 181 (303)
T TIGR01288 159 LDEPTTGLDPHARHLIWERLRSL 181 (303)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999875
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=292.78 Aligned_cols=165 Identities=28% Similarity=0.402 Sum_probs=139.6
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i 342 (443)
+.++|+++||+++|+ ++.+|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 38 ~~~~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~i 116 (340)
T PRK13536 38 STVAIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARI 116 (340)
T ss_pred CceeEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccE
Confidence 346899999999996 567999999999999999999999999999999999999999999987542 359
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. +....++.+++.. ...... ...+..+++.+++. +..++++.+||||||||++||+||+.+|++
T Consensus 117 g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l 193 (340)
T PRK13536 117 GVVPQFDN--LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQL 193 (340)
T ss_pred EEEeCCcc--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999853 4445566666542 121222 23456788899986 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+|||+.++..+.+.|.++
T Consensus 194 LiLDEPt~gLD~~~r~~l~~~l~~l 218 (340)
T PRK13536 194 LILDEPTTGLDPHARHLIWERLRSL 218 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=277.91 Aligned_cols=162 Identities=33% Similarity=0.484 Sum_probs=133.4
Q ss_pred EEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 278 QLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 278 ~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999632 57999999999999999999999999999999999999999999987541 258999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++...+ ...++.+++... ..... ...+..++..+++. +..++++..|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~~~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPDDQF-FGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChhhhc-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99852112 234666655321 11111 23567789999986 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999775
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=282.99 Aligned_cols=166 Identities=23% Similarity=0.341 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce--------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-------------- 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-------------- 340 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+..
T Consensus 5 ~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 5 PLLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred ceEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 5799999999996 4689999999999999999999999999999999999999999999875421
Q ss_pred ------EEEEeccCcccccccchhHHHHHHH---hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 341 ------KFGYFSQHHVDQLDMNLRCVQLLEA---AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 341 ------~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
.++|++|++...+....+..+++.. .+.. .....+.+++..+++.....++++.+|||||+||++||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 4899999864334444444433321 1111 11345667889999864467899999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 164 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (258)
T PRK11701 164 RNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=294.68 Aligned_cols=163 Identities=27% Similarity=0.382 Sum_probs=138.2
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
||+++||+++|++ ..++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999953 247999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..+||++|++. +....++.+++... ..... .+.+.+++..+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHFN--LLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCcc--ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 25999999863 44456777766431 11222 23567889999996 57889999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|++.
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l 186 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEI 186 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=284.83 Aligned_cols=164 Identities=26% Similarity=0.362 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 5 ANLVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred cceEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 35899999999995 567999999999999999999999999999999999999999999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..++|++|++. +....++.+++... ..... ...+..++..+++. +..++++.+|||||||||+||++++.
T Consensus 84 ~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~ 160 (269)
T PRK11831 84 KRMSMLFQSGA--LFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIAL 160 (269)
T ss_pred hcEEEEecccc--cCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 24899999853 34445666665421 11111 23456788999996 56788999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 189 (269)
T PRK11831 161 EPDLIMFDEPFVGQDPITMGVLVKLISEL 189 (269)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=270.83 Aligned_cols=161 Identities=24% Similarity=0.367 Sum_probs=135.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 47899999996 568999999999999999999999999999999999999999999987542 2589999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
|++. +....++.+++... ........+..+++.+++. +..++++.+||||||||++||++++.+|++|||||||+
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 80 HLPG--LKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cCcc--cccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 8742 34445666665321 1112234577889999986 45788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.++|.++
T Consensus 157 ~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAH 173 (198)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999875
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=281.78 Aligned_cols=166 Identities=25% Similarity=0.370 Sum_probs=136.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++||+++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 2 PLLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred ceEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 5799999999996 467999999999999999999999999999999999999999999987531
Q ss_pred -----eEEEEeccCcccccccchhHHHHHHH---hCC--C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 340 -----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFP--G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 -----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~--~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++...+....++.+.+.. .+. . .....+..++..+++.....++++..|||||||||+||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 13899999863333333343333321 111 0 12346678899999964567899999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+|++|||||||+|||+.+++.+.+.|.++
T Consensus 161 ral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 194 (253)
T TIGR02323 161 RNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 194 (253)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=275.78 Aligned_cols=161 Identities=30% Similarity=0.436 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~~~ 346 (443)
|+++|++++|+ ++++|+|+||+|.+| +++|+||||||||||+++|+|+++|++|+|.+.+ ...++|++
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 47899999995 467999999999999 9999999999999999999999999999998864 23589999
Q ss_pred cCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.. ..... ..+.+..++..+++. +..++++.+||||||||++||++++.+|++||||
T Consensus 79 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 155 (211)
T cd03264 79 QEFG--VYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD 155 (211)
T ss_pred CCCc--ccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9863 3344566655532 11111 134567789999986 4668899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcccc
Q psy208 421 EPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||++||+.+++.+.+.|.++.
T Consensus 156 EPt~~LD~~~~~~l~~~l~~~~ 177 (211)
T cd03264 156 EPTAGLDPEERIRFRNLLSELG 177 (211)
T ss_pred CCcccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999998763
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=280.02 Aligned_cols=161 Identities=31% Similarity=0.431 Sum_probs=135.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~ 344 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 46899999996 467999999999999999999999999999999999999999999987531 24899
Q ss_pred eccCcccccccchhHHHHHHHhC---CC-------------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF---PG-------------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~---~~-------------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
++|++. +....++.+++.... .. .....+.+++..+|+. ...++++.+|||||||||+||+
T Consensus 80 v~q~~~--l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 80 TFQIPR--LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred Eecccc--cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHH
Confidence 999863 444456666653211 11 0123467789999986 5678999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=280.69 Aligned_cols=162 Identities=28% Similarity=0.448 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------~~i 342 (443)
|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999963267999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++.... .....+.+..++..+++. ...++++.+|||||||||+||+
T Consensus 81 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQFN--LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEcccCc--ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHH
Confidence 99999863 344456666653211 011134567789999986 5678899999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999765
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=283.93 Aligned_cols=167 Identities=22% Similarity=0.341 Sum_probs=136.8
Q ss_pred CeEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999952 246999999999999999999999999999999999999999999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..++|++|++...+....++.+++.. ..... ..+.+..++..+++.....++++.+|||||||||+||+
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 25899999863223344454444421 11111 12356788999999655678889999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 195 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=276.03 Aligned_cols=164 Identities=29% Similarity=0.393 Sum_probs=138.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
+++|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 5 SPLLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred CceEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 35799999999996 567999999999999999999999999999999999999999999987642 358
Q ss_pred EEeccCcccccccchhHHHHHHH---hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA---AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+|++|++. +.. .++.+++.. .... .....+..++..+++.....++++.+|||||+|||+||++++.+|++||
T Consensus 84 ~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 84 SYCAQTPT--LFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred EEEecccc--ccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999863 222 366666532 1111 1234567889999996456789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~ 183 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRY 183 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=278.37 Aligned_cols=162 Identities=28% Similarity=0.444 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~ 79 (236)
T TIGR03864 1 ALEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVV 79 (236)
T ss_pred CEEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEe
Confidence 478999999996 568999999999999999999999999999999999999999999987542 258999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++... .... ....+.+++..+|+. ...++++.+|||||+||++||++++.+|++|||
T Consensus 80 ~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llll 156 (236)
T TIGR03864 80 FQQPT--LDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLL 156 (236)
T ss_pred CCCCC--CcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 33445666665321 1111 123567788999986 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 157 DEP~~~LD~~~~~~l~~~l~~~ 178 (236)
T TIGR03864 157 DEPTVGLDPASRAAIVAHVRAL 178 (236)
T ss_pred cCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999765
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=273.70 Aligned_cols=159 Identities=27% Similarity=0.373 Sum_probs=133.2
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEEE
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKFG 343 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ig 343 (443)
++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 479999996 468999999999999999999999999999999999999999999977532 2589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++... .... ..+.+.+++..+|+. ...++++.+|||||+||++||++|+.+|++|
T Consensus 80 ~~~q~~~--~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~ll 156 (206)
T TIGR03608 80 YLFQNFA--LIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLI 156 (206)
T ss_pred EEecchh--hccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853 34445666655321 1111 234567889999985 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|+++
T Consensus 157 llDEPt~~LD~~~~~~l~~~l~~~ 180 (206)
T TIGR03608 157 LADEPTGSLDPKNRDEVLDLLLEL 180 (206)
T ss_pred EEeCCcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999865
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=271.66 Aligned_cols=162 Identities=29% Similarity=0.464 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEecc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQ 347 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q 347 (443)
+|+++|+++.|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (207)
T PRK13539 2 MLEGEDLACVRG-GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGH 80 (207)
T ss_pred EEEEEeEEEEEC-CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecC
Confidence 689999999996 467999999999999999999999999999999999999999999988652 14789987
Q ss_pred CcccccccchhHHHHHHH--hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 348 HHVDQLDMNLRCVQLLEA--AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.+. +....++.+++.. .........+.+++..+|+. ...++++++||||||||++||++++.+|++|||||||++
T Consensus 81 ~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 157 (207)
T PRK13539 81 RNA--MKPALTVAENLEFWAAFLGGEELDIAAALEAVGLA-PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157 (207)
T ss_pred CCc--CCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 642 3334566665532 12223345678899999996 466889999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 158 LD~~~~~~l~~~l~~~ 173 (207)
T PRK13539 158 LDAAAVALFAELIRAH 173 (207)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999865
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=274.94 Aligned_cols=161 Identities=27% Similarity=0.398 Sum_probs=135.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig 343 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEEC-CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 47899999996 468999999999999999999999999999999999999999999987542 2489
Q ss_pred EeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++|++. +....++.+++... ..... ...+.+++..+|+. ...++++.+|||||+||++||++++.+|++
T Consensus 80 ~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 80 MVFQQFN--LFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred EEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 9999863 34445666665321 11111 23467788899986 467899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=272.87 Aligned_cols=165 Identities=26% Similarity=0.446 Sum_probs=138.3
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGY 344 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~ 344 (443)
++++|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 8 ~~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 8 APPLLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CcceEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 456899999999996 467999999999999999999999999999999999999999999988642 24899
Q ss_pred eccCcccccccchhHHHHHHHh--C-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--F-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++|++. +....++.+++... . .....+.+..++..+++. +..++++..||||||||++||++++.+|++|||||
T Consensus 87 ~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHLPG--LKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecCcc--cccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 998753 34444666655321 1 111234567889999986 45789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~ 183 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAH 183 (214)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=269.14 Aligned_cols=162 Identities=26% Similarity=0.378 Sum_probs=136.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 ml~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~ 79 (200)
T PRK13540 1 MLDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFV 79 (200)
T ss_pred CEEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEe
Confidence 478999999996 467999999999999999999999999999999999999999999988542 258999
Q ss_pred ccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+|++. +.+..++.+++.... .......+.+++..+++. +..++++..|||||+||++|||+++.+|++|||||||+
T Consensus 80 ~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~ 156 (200)
T PRK13540 80 GHRSG--INPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLV 156 (200)
T ss_pred ccccc--cCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 98753 344556666654321 112234678889999986 45678899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.+.|.++
T Consensus 157 ~LD~~~~~~l~~~l~~~ 173 (200)
T PRK13540 157 ALDELSLLTIITKIQEH 173 (200)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999865
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=292.21 Aligned_cols=163 Identities=29% Similarity=0.396 Sum_probs=137.7
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
||+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999962 35799999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...+||++|++. +....++.+++... ..... ...+..++..+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHFN--LLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCCc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 135999999863 44455666665421 11112 23567789999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l 186 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDI 186 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=282.99 Aligned_cols=166 Identities=24% Similarity=0.417 Sum_probs=137.4
Q ss_pred eEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------- 339 (443)
+|+++||++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 6899999999953 357999999999999999999999999999999999999999999987531
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHH---hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++...+....++.+++.. .... .....+..+++.+|+.....++++..||||||||++|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 25999999863234444566555421 1111 1234567889999996456788999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~ 196 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKL 196 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=293.32 Aligned_cols=164 Identities=23% Similarity=0.401 Sum_probs=141.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~ 344 (443)
+++|+++||+++|+ +..+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||
T Consensus 4 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 82 (351)
T PRK11432 4 KNFVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICM 82 (351)
T ss_pred CcEEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 45899999999996 567999999999999999999999999999999999999999999988642 46999
Q ss_pred eccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++ .+.+..++.+++..... ... .+.+..++..+++. ...++++.+|||||||||+|||||+.+|++||
T Consensus 83 vfQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLL 159 (351)
T PRK11432 83 VFQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLL 159 (351)
T ss_pred EeCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99986 35666787887753211 111 34667889999996 57789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|+++
T Consensus 160 LDEP~s~LD~~~r~~l~~~l~~l 182 (351)
T PRK11432 160 FDEPLSNLDANLRRSMREKIREL 182 (351)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=275.61 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=133.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEEcCc------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII-----SPTAGTRTVHRN------------ 339 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~------------ 339 (443)
|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+.
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 47899999996 468999999999999999999999999999999999999 999999987541
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCChhhhhcc--CCCCCHHHHHHHHHHHH
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSGDLALQF--VGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~~~~~~~--~~~LSgGekqRl~lA~a 409 (443)
..++|++|++. +. ..++.+++... .... ....+..++..+|+.. ..+++ +.+||||||||++||++
T Consensus 80 ~~~i~~~~q~~~--~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~a 155 (227)
T cd03260 80 RRRVGMVFQKPN--PF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCLARA 155 (227)
T ss_pred HhhEEEEecCch--hc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHH
Confidence 24899999863 33 45666665421 1111 1345678899999964 44555 59999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 156 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 188 (227)
T cd03260 156 LANEPEVLLLDEPTSALDPISTAKIEELIAELK 188 (227)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998763
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=277.09 Aligned_cols=162 Identities=31% Similarity=0.429 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999995 567999999999999999999999999999999999999999999987641 35899
Q ss_pred eccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
++|++. +.. .++.+++... .......++..++..+++..+..++++.+||||||||++||+|++.+|++||||||
T Consensus 82 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 158 (241)
T PRK14250 82 VFQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158 (241)
T ss_pred EecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999863 222 4666665421 11222346778899999964567889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 159 t~~LD~~~~~~l~~~l~~~ 177 (241)
T PRK14250 159 TSALDPTSTEIIEELIVKL 177 (241)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=284.38 Aligned_cols=165 Identities=29% Similarity=0.375 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
++|+++|+++.|+++.++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+|
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 37999999999964467999999999999999999999999999999999999999999987641 3589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++... ..... ...+..+++.+|+. +..++++.+|||||||||+||+||+.+|++|
T Consensus 83 ~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 160 (274)
T PRK13647 83 LVFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVI 160 (274)
T ss_pred EEecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863222 234666666421 11111 24567889999996 5688999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 161 llDEPt~~LD~~~~~~l~~~l~~~ 184 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEILDRL 184 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=285.61 Aligned_cols=163 Identities=26% Similarity=0.436 Sum_probs=138.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
+++++|++++|+ ++.+|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+||+
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~ 80 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEe
Confidence 489999999996 578999999999999999999999999999999999999999999987542 259999
Q ss_pred ccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++. +....++.+++.. ...+.. ...+..++..+|+. ...+++++.||||||||++||+|++.+|++|||
T Consensus 81 ~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliL 157 (301)
T TIGR03522 81 PEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLIL 157 (301)
T ss_pred cCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99863 4455566666542 111211 34577889999996 457899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||||+|||+.+++.+.+.|+++.
T Consensus 158 DEPt~gLD~~~~~~l~~~l~~~~ 180 (301)
T TIGR03522 158 DEPTTGLDPNQLVEIRNVIKNIG 180 (301)
T ss_pred cCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=276.81 Aligned_cols=163 Identities=30% Similarity=0.417 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999642 17999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..++|++|++. +....++.+++... ..... ...+.++++.+++. +..++++.+||||||||++||++++.
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQHFN--LLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 35899999863 34445666665421 11111 23567889999986 56788999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 186 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDI 186 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=276.39 Aligned_cols=161 Identities=29% Similarity=0.473 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~ 344 (443)
|+++||++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 47899999996 567999999999999999999999999999999999999999999987531 24899
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +....++.+++.... .... ...+..++..+++. +..++++.+||||||||++||++++.+|++||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 156 (232)
T cd03218 80 LPQEAS--IFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLL 156 (232)
T ss_pred ecCCcc--ccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 344456666654211 1111 23456788999986 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|+++
T Consensus 157 lDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 157 LDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred ecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=277.91 Aligned_cols=164 Identities=29% Similarity=0.415 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 1 PILYLEGLSVSFD-GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred CeEEEEeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 3689999999996 467999999999999999999999999999999999999999999987541 248
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--------------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--------------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--------------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++..... ......+..++..+|+. ...++++.+|||||+||++||+
T Consensus 80 ~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~lar 156 (242)
T TIGR03411 80 GRKFQKPT--VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGM 156 (242)
T ss_pred eEeccccc--cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHH
Confidence 99999853 4445566665543110 00133567889999986 5678899999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 157 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 157 LLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190 (242)
T ss_pred HHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=295.98 Aligned_cols=163 Identities=34% Similarity=0.488 Sum_probs=139.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ ...+|
T Consensus 2 ~~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig 80 (402)
T PRK09536 2 PMIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVA 80 (402)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceE
Confidence 4799999999996 57899999999999999999999999999999999999999999998754 13599
Q ss_pred EeccCcccccccchhHHHHHHHh-------CC---CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA-------FP---GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~-------~~---~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +....++.+++... +. ....+.+..+++.+++. +..++++.+||||||||++|||||+++
T Consensus 81 ~v~q~~~--l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~ 157 (402)
T PRK09536 81 SVPQDTS--LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQA 157 (402)
T ss_pred EEccCCC--CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999863 34455666665421 11 11234577889999986 677899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||+|||+.++..+.++|+++
T Consensus 158 P~iLLLDEPtsgLD~~~~~~l~~lL~~l 185 (402)
T PRK09536 158 TPVLLLDEPTASLDINHQVRTLELVRRL 185 (402)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=275.05 Aligned_cols=161 Identities=31% Similarity=0.466 Sum_probs=132.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig~ 344 (443)
|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57899999996 46799999999999999999999999999999999999999999998753 124899
Q ss_pred eccCcccccccchhHHHHHHHhC--CC--CCHHHHHHHHhcC-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PG--KPQEEYRRQLGGF-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~--~~~~~~~~~L~~~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
++|++. +....++.+++.... .. .....+..++..+ ++. +..++++.+||||||||++|||+++.+|++|||
T Consensus 80 ~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 80 VPEGRR--IFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred eccccc--cCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999863 444556666654221 11 1123455667777 353 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~ 178 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIREL 178 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=285.40 Aligned_cols=165 Identities=29% Similarity=0.382 Sum_probs=136.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
||+++|++++|+++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 58999999999632 25999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+.. .++.+++.... .+.. ...+.++++.+++.....++++..||||||||++||++|
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 2489999986323332 46666664211 1112 234677888999965567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..|.+.|.++
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l 190 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=278.09 Aligned_cols=163 Identities=29% Similarity=0.426 Sum_probs=135.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++||+++|++.+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999963257999999999999999999999999999999999999999999987531 358999
Q ss_pred ccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+|++. +....++.+++... ..... ...+.+++..+++.. ...++++.+|||||||||+||++++.+|++||
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQIG--LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccCcc--ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99863 44445666665321 11111 235678899999974 36789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~ 181 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRL 181 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=274.01 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCC------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc--C---c-----
Q psy208 276 ILQLSEVNFEYVP------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--R---N----- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~--~---~----- 339 (443)
+|+++|++++|++ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+. + +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999952 1469999999999999999999999999999999999999999999885 2 1
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
..++|++|++. +....++.+++... .... ..+.+..++..+++.....++++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR--VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecccc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 25899999863 34445555554321 1111 1345677899999964455789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEA 195 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=283.75 Aligned_cols=165 Identities=30% Similarity=0.399 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
+|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 58899999999632 46999999999999999999999999999999999999999999987542
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+. ..++.+++.. ...... ...+.+++..+|+.....++++.+||||||||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 248999998632232 3466666542 111111 234678899999964567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l 191 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=286.66 Aligned_cols=169 Identities=24% Similarity=0.245 Sum_probs=139.2
Q ss_pred CCCCeEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------
Q psy208 272 LSPPILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------- 338 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------- 338 (443)
.+.++|+++|++++|++. .++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 355789999999999632 3699999999999999999999999999999999999999999998752
Q ss_pred ------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCC
Q psy208 339 ------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 339 ------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
...+||++|++...+.. .++.+++... ..... ...+..++..+|+.....++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 175 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPF 175 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 12489999986323332 3666665321 11112 23466788999996456789999
Q ss_pred CCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 176 ~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l 222 (320)
T PRK13631 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDA 222 (320)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=289.04 Aligned_cols=168 Identities=24% Similarity=0.348 Sum_probs=141.3
Q ss_pred CCeEEEeeeEEEeCC---------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----
Q psy208 274 PPILQLSEVNFEYVP---------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----- 339 (443)
.++|+++||++.|+. ...+|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 358999999999952 246999999999999999999999999999999999999999999987541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
..++|++|++...+++..++.+.+.. ..... ....+.++|..+|+.....++++++|||||+||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 25999999975556666666555432 11111 124578899999997567789999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l 200 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL 200 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=279.56 Aligned_cols=162 Identities=28% Similarity=0.429 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------------- 338 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 699999999996 46799999999999999999999999999999999999999999997642
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
...++|++|++. +.+..++.+++.. ...... ...+..++..+|+. ...++++.+|||||||||+||++
T Consensus 82 ~~~~~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 82 QLRQHVGFVFQNFN--LFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HhhhhEEEEecCcc--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHH
Confidence 125899999853 3444566666532 111111 23467788999986 45688999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 190 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQL 190 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=285.51 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=137.2
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
+|+++||+++|++. .++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999643 2599999999999999999999999999999999999999999998742
Q ss_pred ----------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhh
Q psy208 339 ----------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLAL 390 (443)
Q Consensus 339 ----------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~ 390 (443)
...+||++|++...+. ..++.+++... ..+.. ...+.++++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1248999998633333 34666666421 11122 3456788999999656788
Q ss_pred ccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l 211 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL 211 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=284.59 Aligned_cols=165 Identities=29% Similarity=0.364 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|++. .++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999642 46999999999999999999999999999999999999999999987542
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+. ..++.+++... ..... ...+..+++.+++.....++++..|||||||||+||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 258999998632333 34666665421 11112 234677889999965567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l 191 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=289.17 Aligned_cols=168 Identities=18% Similarity=0.365 Sum_probs=141.4
Q ss_pred CCeEEEeeeEEEeCC------------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--
Q psy208 274 PPILQLSEVNFEYVP------------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~------------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-- 339 (443)
+++|+++||+++|+. ...+++|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 468999999999952 146999999999999999999999999999999999999999999987531
Q ss_pred ------------eEEEEeccCcccccccchhHHHHHHHh---C-CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHH
Q psy208 340 ------------LKFGYFSQHHVDQLDMNLRCVQLLEAA---F-PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGG 399 (443)
Q Consensus 340 ------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~-~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgG 399 (443)
..++|++|++...+++..++.+++... + .... .+.+.+++..+++..+..++++++||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 259999999743466666777665421 1 1122 2346678999999666789999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+||+||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 166 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 166 QCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998764
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=284.31 Aligned_cols=165 Identities=27% Similarity=0.375 Sum_probs=136.5
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
.|+++||++.|++. +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 38999999999642 4699999999999999999999999999999999999999999998753
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
...+||++|++...+. ..++.+++... ..+.. ...+..+++.+|+.. +..++++..||||||||++||+||+
T Consensus 82 ~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQLF-EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhccc-cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 1258999998632222 34666665421 11122 234678899999962 4678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l 190 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKEL 190 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=293.99 Aligned_cols=162 Identities=25% Similarity=0.347 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
.|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~ 81 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVF 81 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEe
Confidence 589999999996 567999999999999999999999999999999999999999999987542 2599999
Q ss_pred cCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +.+..++.+++.... .... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD 158 (369)
T PRK11000 82 QSYA--LYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (369)
T ss_pred CCcc--cCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9863 455567777764321 1111 24567889999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 159 EPts~LD~~~~~~l~~~L~~l 179 (369)
T PRK11000 159 EPLSNLDAALRVQMRIEISRL 179 (369)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=276.78 Aligned_cols=162 Identities=30% Similarity=0.386 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 339 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 588999999996 468999999999999999999999999999999999999999999987532
Q ss_pred -eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++.. ...... ...+..++..+|+. ...++++..||||||||++|||+++
T Consensus 81 ~~~i~~~~q~~~--~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~ 157 (242)
T PRK11124 81 RRNVGMVFQQYN--LWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HhheEEEecCcc--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 24899999863 4444566666532 111111 23467788999986 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~llilDEPt~~LD~~~~~~l~~~l~~~ 187 (242)
T PRK11124 158 MEPQVLLFDEPTAALDPEITAQIVSIIREL 187 (242)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=279.38 Aligned_cols=164 Identities=26% Similarity=0.394 Sum_probs=137.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
..|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4689999999996 568999999999999999999999999999999999999999999977541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
..++|++|++. +....++.+++.. ..... ....+.+++..+|+.....++++..||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~--l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFN--LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecCcc--cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 24899999863 3444566666532 11111 134567889999996444478899999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 198 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL 198 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=278.50 Aligned_cols=163 Identities=27% Similarity=0.385 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 4 PLLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred ceEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 5799999999996 568999999999999999999999999999999999999999999987542 247
Q ss_pred EEeccCcccccccchhHHHHHHHhC------------------CCC---CHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------------------PGK---PQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------------------~~~---~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|++|++. +....++.+++.... ... ....+..++..+|+. +..++++.+||||||
T Consensus 83 ~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHVR--LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 88999863 444556666554210 000 113466778899985 567899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~ 199 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAEL 199 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999765
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=290.49 Aligned_cols=163 Identities=31% Similarity=0.465 Sum_probs=141.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
++|+++||+++|+ ++.+|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+||+
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v 81 (353)
T TIGR03265 3 PYLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIV 81 (353)
T ss_pred cEEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4699999999996 567999999999999999999999999999999999999999999988642 359999
Q ss_pred ccCcccccccchhHHHHHHHhC--CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF--PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++ .+.+..++.+++.... ... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 82 ~Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLL 158 (353)
T TIGR03265 82 FQSY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLL 158 (353)
T ss_pred eCCc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985 3556678887775321 111 134678899999996 578899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|+++
T Consensus 159 DEP~s~LD~~~r~~l~~~L~~l 180 (353)
T TIGR03265 159 DEPLSALDARVREHLRTEIRQL 180 (353)
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=280.17 Aligned_cols=165 Identities=26% Similarity=0.389 Sum_probs=138.2
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 8 ~~~~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 8 SDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred CCceEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 356899999999996 568999999999999999999999999999999999999999999988642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCC----------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFP----------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++..... ......+..++..+++. +..++++.+|||||||||+||++++
T Consensus 87 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~ 163 (265)
T PRK10575 87 VAYLPQQLP--AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVA 163 (265)
T ss_pred eEEeccCCC--CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHh
Confidence 899999853 3344566666542110 01123567889999985 5678899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 164 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 193 (265)
T PRK10575 164 QDSRCLLLDEPTSALDIAHQVDVLALVHRL 193 (265)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=275.68 Aligned_cols=162 Identities=27% Similarity=0.428 Sum_probs=136.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig 343 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 689999999996 56899999999999999999999999999999999999999999998754 13589
Q ss_pred EeccCcccccccchhHHHHHHHhC---CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF---PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~---~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++|++. +....++.+++.... ... ....+.+++..+++. +..++++..|||||+|||+||++++.+|++
T Consensus 82 ~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 82 YLPQEAS--IFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EeccCCc--ccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999853 344456666654211 111 123567789999986 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~ 183 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHL 183 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999888754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=276.59 Aligned_cols=162 Identities=27% Similarity=0.405 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 1 ~l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 1 MIEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred CEEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 478999999996 467999999999999999999999999999999999999999999987531 258
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++|++. +.+..++.+++... .... ....+.+++..+|+. ...++++..||||||||++||++++.+|+
T Consensus 80 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 80 GMVFQQFY--LFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred EEEecccc--cCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 99999853 34445666655321 1111 123467789999996 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~ 182 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDL 182 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=283.39 Aligned_cols=165 Identities=26% Similarity=0.341 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|+++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999632 36999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..+||++|++...+.. .++.+++... ..... ...+.+++..+|+..+..++++.+||||||||++||++|
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2589999986323332 3666666421 11112 245678899999964567889999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l 191 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL 191 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=282.07 Aligned_cols=163 Identities=26% Similarity=0.336 Sum_probs=132.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
||+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 1 ml~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 1 MLATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred CeEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 588999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+. ..++.+++.. ...... ...+..++..+|+. +..++++.+||||||||++||++|+.+|++
T Consensus 80 ~~v~q~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~l 157 (271)
T PRK13638 80 ATVFQDPEQQIF-YTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARY 157 (271)
T ss_pred EEEeeChhhccc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCE
Confidence 999998632222 2233333321 111111 23456788889985 467889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 158 llLDEPt~~LD~~~~~~l~~~l~~~ 182 (271)
T PRK13638 158 LLLDEPTAGLDPAGRTQMIAIIRRI 182 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=280.87 Aligned_cols=165 Identities=22% Similarity=0.341 Sum_probs=133.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEEEecc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFGYFSQ 347 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig~~~Q 347 (443)
+|+++||+++|++++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 6899999999964568999999999999999999999999999999999999999999987642 25999999
Q ss_pred CcccccccchhHHHHHHH-------hC--CC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 348 HHVDQLDMNLRCVQLLEA-------AF--PG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~-------~~--~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
++........+..+.+.. .+ +. .....+..++..+|+. +..++++.+||||||||++||++|+.+|++|
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 863211112222232210 00 00 1123466788999986 4678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~ 188 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLREL 188 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=277.79 Aligned_cols=162 Identities=27% Similarity=0.431 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 689999999996 467999999999999999999999999999999999999999999987542 24899
Q ss_pred eccCcccccccchhHHHHHHHhCC--CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc------c
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFP--GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM------A 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~------~ 412 (443)
++|++. +....++.+++..... .. ....+..++..+++. ...++++.+|||||||||+||++|+ .
T Consensus 81 ~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~ 157 (258)
T PRK13548 81 LPQHSS--LSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDG 157 (258)
T ss_pred EccCCc--CCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 999853 3344577776643211 11 123567789999986 5678999999999999999999999 5
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (258)
T PRK13548 158 PPRWLLLDEPTSALDLAHQHHVLRLARQL 186 (258)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=317.24 Aligned_cols=162 Identities=23% Similarity=0.240 Sum_probs=135.7
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+++|+++ .++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999654 4799999999999999999999999999999999999999999999875 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh------hhhc----cCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD------LALQ----FVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~------~~~~----~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. +...+++++.+.++..++... -.+. ...+||||||||++||||++++
T Consensus 1364 iVpQdp~--LF-~gTIr~NLdp-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1364 IIPQDPV--LF-SGSLRMNLDP-FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred EECCCCc--cc-CccHHHHcCc-ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 9999974 22 3477777742 234567788888887776321 1222 3357999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++...+.+.|++.
T Consensus 1440 ~~ILiLDEaTSalD~~Te~~Iq~~l~~~ 1467 (1522)
T TIGR00957 1440 TKILVLDEATAAVDLETDNLIQSTIRTQ 1467 (1522)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=271.54 Aligned_cols=161 Identities=29% Similarity=0.424 Sum_probs=137.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccCc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQHH 349 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~~ 349 (443)
|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 47899999996 568999999999999999999999999999999999999999999987542 3589999985
Q ss_pred ccccccchhHHHHHHH--hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 350 VDQLDMNLRCVQLLEA--AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
. +....++.+++.. .........+..+++.+|+. +..++++.+|||||+||++||++++.+|++|||||||++||
T Consensus 80 ~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 80 P--LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred C--ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 3 3344566666532 11223456778899999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 157 ~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 157 PIGIQELRELIRSF 170 (223)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=275.72 Aligned_cols=162 Identities=25% Similarity=0.334 Sum_probs=131.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~i 342 (443)
|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|++ +|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 47899999996 567999999999999999999999999999999999995 799999987541 238
Q ss_pred EEeccCcccccccchhHHHHHHHh---CCC------CC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA---FPG------KP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVAFAR 408 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~---~~~------~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~lA~ 408 (443)
+|++|++. +....++.+++... ... .. .+.+..++..+++.....++++. .|||||||||+||+
T Consensus 80 ~~v~q~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 80 FLAFQYPE--EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred Eeeecccc--ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 89999863 33344444443211 000 01 23567788999996455677887 59999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRL 190 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999876
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=273.65 Aligned_cols=162 Identities=29% Similarity=0.442 Sum_probs=133.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ig~ 344 (443)
|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57899999996 46899999999999999999999999999999999999999999998753 125899
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++|++. +....++.+++.... .... ......++..++......++++.+|||||+||++||++++.+|++|||||
T Consensus 80 ~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 80 VPQGRE--IFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred eccCCc--ccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 999863 344556666654221 1111 23346667777633356788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~ 177 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRL 177 (230)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=290.07 Aligned_cols=165 Identities=24% Similarity=0.376 Sum_probs=142.1
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEE
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFG 343 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig 343 (443)
..++|+++|++++|+ ++++|+++||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+|
T Consensus 11 ~~~~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 11 LSPLVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred CCceEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 346799999999996 567999999999999999999999999999999999999999999988642 3599
Q ss_pred EeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++ .+.+..++.+++.... .... ...+..+++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 90 ~vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~ll 166 (375)
T PRK09452 90 TVFQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166 (375)
T ss_pred EEecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999986 3566778888775322 1112 23567789999996 5788999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||..+++.|.+.|+++
T Consensus 167 LLDEP~s~LD~~~r~~l~~~L~~l 190 (375)
T PRK09452 167 LLDESLSALDYKLRKQMQNELKAL 190 (375)
T ss_pred EEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=269.68 Aligned_cols=162 Identities=31% Similarity=0.479 Sum_probs=133.8
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|+++.|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 7899999999642 57999999999999999999999999999999999999999999988542 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc-----------CCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----------VGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~-----------~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +.. .++.+++...........+..++..+++. +..++. +.+||||||||++||++++.+
T Consensus 83 ~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDVT--LFY-GTLRDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCCc--ccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 999863 222 46777664322222345567778888875 344443 469999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||++||+.++..+.+.|.++.
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~ 187 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLL 187 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=280.09 Aligned_cols=165 Identities=30% Similarity=0.400 Sum_probs=137.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++|++++|++++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 57999999999964567999999999999999999999999999999999999999999987641 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++...+ ...++.+++... ..+.. ...+..+++.+|+. ...++++.+||||||||++||++|+.+|+
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 899999863222 234666666421 11111 23567788999996 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l 187 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEM 187 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=281.91 Aligned_cols=165 Identities=30% Similarity=0.369 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++||+++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38899999999642 36999999999999999999999999999999999999999999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
..++|++|++...+.. .++.+++... ..... ...+..++..+++.....++++.+||||||||++||+||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 2489999985222222 3666655321 11111 223567788899964567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 191 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKL 191 (280)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998865
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=312.19 Aligned_cols=162 Identities=23% Similarity=0.310 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +..++
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 49999999999754 4599999999999999999999999999999999999999999999864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. +.|+.+++.. +...+++++...++..++.... .+ ....+||||||||++|||||+++
T Consensus 1388 iVpQdp~--LF-~gTIreNIdp-~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~ 1463 (1560)
T PTZ00243 1388 MIPQDPV--LF-DGTVRQNVDP-FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKK 1463 (1560)
T ss_pred EECCCCc--cc-cccHHHHhCc-ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcC
Confidence 9999974 22 3477888743 3345678888999888875311 12 23357999999999999999995
Q ss_pred -CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 -PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 -p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|.+.
T Consensus 1464 ~~~ILlLDEATSaLD~~te~~Iq~~L~~~ 1492 (1560)
T PTZ00243 1464 GSGFILMDEATANIDPALDRQIQATVMSA 1492 (1560)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999998764
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=280.60 Aligned_cols=164 Identities=29% Similarity=0.382 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig 343 (443)
+|+++|++++|++++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 4789999999964567999999999999999999999999999999999999999999987531 2489
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++... ..... .+.+..++..+|+. ...++++..|||||+||++||+||+.+|++|
T Consensus 81 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863222 234666665321 11111 23466788899985 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l 182 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKL 182 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=281.07 Aligned_cols=165 Identities=28% Similarity=0.405 Sum_probs=138.3
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
++|+++||++.|++ .+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 57999999999963 357999999999999999999999999999999999999999999987542 258
Q ss_pred EEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. .+....++.+++.... .... ...+..++..+|+. ...++++..|||||||||+||++|+.+|++
T Consensus 84 ~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999862 1233456677664211 1112 23467888999996 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l 186 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQL 186 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999765
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=259.13 Aligned_cols=137 Identities=25% Similarity=0.421 Sum_probs=120.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|++++|++++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.....++|++|++. +. .
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~--~~-~ 77 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPY--LP-L 77 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCc--cc-c
Confidence 47899999996446799999999999999999999999999999999999999999999987778999999863 22 3
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.++.+++... ++..||||||||++|||+++.+|++|||||||++||+.+++.+.+
T Consensus 78 ~tv~~nl~~~-------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~ 132 (166)
T cd03223 78 GTLREQLIYP-------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ 132 (166)
T ss_pred ccHHHHhhcc-------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH
Confidence 4555554210 357899999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 133 ~l~~~ 137 (166)
T cd03223 133 LLKEL 137 (166)
T ss_pred HHHHh
Confidence 98764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=279.07 Aligned_cols=167 Identities=22% Similarity=0.370 Sum_probs=137.6
Q ss_pred CeEEEeeeEEEeCC--------CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVP--------GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--------~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++||++.|++ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 467999999999999999999999999999999999999999999987542
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++...+....++.+++.. .+... ....+..++..+|+.....++++..|||||+||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 25999999863234444455544321 11111 12356788999999655678999999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~ 197 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKL 197 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=279.70 Aligned_cols=165 Identities=31% Similarity=0.432 Sum_probs=137.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.+++++|++++|++.+.+|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+.+. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 46899999999964456999999999999999999999999999999999999999999987542 2489
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+. ..++.+++... ..... ...+..++..+++. +..++++..||||||||++||+||+.+|++|
T Consensus 82 ~v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQIF-SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCcccccc-cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99998632222 34666665321 11122 23467889999996 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l 183 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDL 183 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=276.22 Aligned_cols=162 Identities=25% Similarity=0.397 Sum_probs=135.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 589999999996 568999999999999999999999999999999999999999999987542 24899
Q ss_pred eccCcccccccchhHHHHHHHh-------CC---CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-------FP---GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-------~~---~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +....++.+++... +. ......+..++..+++. ...++++.+|||||+||++||+|++.+|
T Consensus 81 ~~q~~~--~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p 157 (255)
T PRK11231 81 LPQHHL--TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDT 157 (255)
T ss_pred ecccCC--CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999863 33344566655321 11 11133567788889985 4678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~llllDEP~~~LD~~~~~~l~~~l~~l 184 (255)
T PRK11231 158 PVVLLDEPTTYLDINHQVELMRLMREL 184 (255)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=287.70 Aligned_cols=162 Identities=27% Similarity=0.440 Sum_probs=139.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..++|++
T Consensus 2 ~L~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~ 80 (353)
T PRK10851 2 SIEIANIKKSFG-RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVF 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEe
Confidence 489999999996 467999999999999999999999999999999999999999999988542 3599999
Q ss_pred cCcccccccchhHHHHHHHhCC------CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP------GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~------~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
|++ .+.+..++.+++..... ... ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 Q~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~l 157 (353)
T PRK10851 81 QHY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQI 157 (353)
T ss_pred cCc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 985 35566777777753211 111 24567889999996 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 158 lLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 158 LLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=273.89 Aligned_cols=163 Identities=24% Similarity=0.311 Sum_probs=135.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~~----------- 339 (443)
+|+++||+++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 1 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 1 AIEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred CEEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 478999999996 467999999999999999999999999999999999999998 999987431
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++... ... .. ...+..++..+|+.. +..++++.+||||||||++||
T Consensus 80 ~~~~i~~v~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 156 (247)
T TIGR00972 80 LRRRVGMVFQKPN--PFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIA 156 (247)
T ss_pred HHhheEEEecCcc--cCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHH
Confidence 25899999863 333 5666665421 111 11 235677889999862 456789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|+.+|++|||||||++||+.++..+.+.|.++.
T Consensus 157 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 191 (247)
T TIGR00972 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELK 191 (247)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998753
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=268.03 Aligned_cols=159 Identities=26% Similarity=0.398 Sum_probs=133.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
|+++|++++|+ ++. .|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 47899999996 333 3999999999999999999999999999999999999999988542 25899999
Q ss_pred CcccccccchhHHHHHHHhCC---C---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFP---G---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~---~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++..... . .....+..++..+++. ...++++.+||||||||++||++++.+|++|||||
T Consensus 78 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDE 154 (211)
T cd03298 78 ENN--LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDE 154 (211)
T ss_pred ccc--cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 3445577776642211 1 1234577889999986 46788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 155 P~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 155 PFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=278.86 Aligned_cols=166 Identities=25% Similarity=0.368 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
.++|+++|++++|++ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...
T Consensus 5 ~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 5 SVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred ceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 358999999999952 46799999999999999999999999999999999999999999998753 124
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++.. .....++.+++... ...... ..+.+++..+++. ...++++..|||||+||++||+||+.+|+
T Consensus 85 i~~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (271)
T PRK13632 85 IGIIFQNPDN-QFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPE 162 (271)
T ss_pred eEEEEeCHHH-hcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 8999998621 22345666665421 111122 2356788999986 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 163 lllLDEP~~gLD~~~~~~l~~~l~~~ 188 (271)
T PRK13632 163 IIIFDESTSMLDPKGKREIKKIMVDL 188 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=276.69 Aligned_cols=162 Identities=28% Similarity=0.445 Sum_probs=141.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig 343 (443)
+|+++|+++.|+ ...+++||||+|+.|+.+|++||||||||||||+|+|++.|++|.|.+++. .+||
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VG 80 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVG 80 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhccee
Confidence 588999999995 678999999999999999999999999999999999999999999988653 3699
Q ss_pred EeccCcccccccchhHHHHHHHhC------CC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF------PG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~------~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
|++|+.. +.+.+|+.+++.-.. +. ....++.++|..+.+. ...+++|.+|||||||||+|||||+.+|+
T Consensus 81 fvFQ~YA--LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 81 FVFQHYA--LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred EEEechh--hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 9999863 677888888876432 11 1244677889988886 57889999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+||||+++||...+..|...|++.
T Consensus 158 vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 158 VLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred eEeecCCchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999888754
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=304.53 Aligned_cols=164 Identities=30% Similarity=0.472 Sum_probs=137.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
+++|+++||+++|++++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....+||++|++. +
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 81 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQ--L 81 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCC--C
Confidence 56899999999996247899999999999999999999999999999999999999999999876678999999863 3
Q ss_pred ccchhHHHHHHHh-----------------CCCC-------------------------CHHHHHHHHhcCCCChhhhhc
Q psy208 354 DMNLRCVQLLEAA-----------------FPGK-------------------------PQEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 354 ~~~~~~~~~~~~~-----------------~~~~-------------------------~~~~~~~~L~~~gl~~~~~~~ 391 (443)
....++.+++... .... ....+..++..+|+. ..++
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~~ 159 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PWDA 159 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cccC
Confidence 3334544443210 0000 123466788889984 3688
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++|||||||||+||++++.+|++|||||||||||+.++.+|.+.|+++
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~ 209 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY 209 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999876
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=274.27 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=134.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.|+|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+.+
T Consensus 4 ~~~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 4 PPKMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CcEEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 46899999999996 4679999999999999999999999999999999999864 6899998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+|||||||||+
T Consensus 83 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 159 (253)
T PRK14242 83 VELRRRVGMVFQKPN--PFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLC 159 (253)
T ss_pred HHHhhcEEEEecCCC--CCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 125899999863 222 3666665421 1111 1235667788888742 3457889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHEL 195 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=276.58 Aligned_cols=163 Identities=25% Similarity=0.361 Sum_probs=137.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCc------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRN------------ 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------------ 339 (443)
++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+.
T Consensus 3 ~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 3 TIIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred cEEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 5899999999996 578999999999999999999999999999999999999986 499876541
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHhC--------------CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAAF--------------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
..++|++|++. +.+..++.+++.... .......+..++..+|+. ...++++.+||||||
T Consensus 82 ~~~~~~i~~~~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 82 RKSRANTGYIFQQFN--LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHhheEEEccccc--cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHH
Confidence 14899999863 344556666664211 011134577889999986 567899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 198 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=279.87 Aligned_cols=165 Identities=28% Similarity=0.401 Sum_probs=137.4
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
++|+++||++.|++. +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 369999999999632 46999999999999999999999999999999999999999999987542 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++.. .....++.+++... ..+.. ...+..+++.+|+. +..++++.+||||||||++||+||+.+|+
T Consensus 83 i~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~ 160 (279)
T PRK13650 83 IGMVFQNPDN-QFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPK 160 (279)
T ss_pred ceEEEcChHH-hcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 8999998632 22344666666421 11112 24567889999996 57789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 161 lLlLDEPt~~LD~~~~~~l~~~l~~l 186 (279)
T PRK13650 161 IIILDEATSMLDPEGRLELIKTIKGI 186 (279)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=278.79 Aligned_cols=165 Identities=27% Similarity=0.321 Sum_probs=134.3
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------ 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------ 339 (443)
.|+++|++++|++. .++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 58999999999643 25999999999999999999999999999999999999999999976431
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..++|++|++...+. ..++.+++.. ....... ..+..++..+++.....++++.+||||||||++||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 248999998632222 2355555532 1111111 3456788889986456789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 196 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988765
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=275.93 Aligned_cols=164 Identities=24% Similarity=0.382 Sum_probs=137.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..+|+++||+++|+ ++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 5 ~~~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35799999999996 567999999999999999999999999999999999999999999987542 248
Q ss_pred EEeccCcccccccchhHHHHHHHh-CC------CC---CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA-FP------GK---PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~-~~------~~---~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +....++.+++... .. .. ....+..++..+++. ...++++.+||||||||++||||++.
T Consensus 84 ~~v~q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~ 160 (265)
T PRK10253 84 GLLAQNAT--TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQ 160 (265)
T ss_pred EEeeccCc--CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhc
Confidence 99999863 33345666665431 11 01 123567788999985 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 ~p~llllDEPt~gLD~~~~~~l~~~L~~l 189 (265)
T PRK10253 161 ETAIMLLDEPTTWLDISHQIDLLELLSEL 189 (265)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=266.76 Aligned_cols=163 Identities=28% Similarity=0.431 Sum_probs=139.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~i 342 (443)
.+|.++|+.|+|+ +++++++|||+|++||++||+|||||||||.+.+++|+.+|++|.|.++. +..+
T Consensus 3 ~~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 3 STLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred cEEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 4689999999995 68899999999999999999999999999999999999999999998863 3469
Q ss_pred EEeccCcccccccchhHHHHHHHhC----CCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF----PGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~----~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
||+||++. .+...++.+++.... ... ...++.++|+.|.+. ...+++..+||||||+|+.|||||+.+|
T Consensus 82 gYLpQE~S--IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P 158 (243)
T COG1137 82 GYLPQEAS--IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANP 158 (243)
T ss_pred ccccccch--HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchH-HHhcCcccccccchHHHHHHHHHHhcCC
Confidence 99999973 455677777765421 111 122466899999996 5778999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++||||++|+||.++..+.+++...
T Consensus 159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 159 KFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred CEEEecCCccCCCchhHHHHHHHHHHH
Confidence 999999999999999999988887654
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=306.96 Aligned_cols=163 Identities=26% Similarity=0.424 Sum_probs=135.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|++.. ..
T Consensus 1 ~i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~-~~- 77 (638)
T PRK10636 1 MIVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPA-LP- 77 (638)
T ss_pred CEEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCC-CC-
Confidence 589999999996 578999999999999999999999999999999999999999999999877789999986421 11
Q ss_pred chhHHHHH-----------------------------HHh---CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 356 NLRCVQLL-----------------------------EAA---FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 356 ~~~~~~~~-----------------------------~~~---~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
.+....+ ... ... .....+..+|..+||.....++++.+|||||||
T Consensus 78 -~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 78 -QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred -CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 1111100 000 001 123467788999999755678999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+||++|+.+|+||||||||||||+.++.+|.+.|.+|.
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~ 196 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQ 196 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998763
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=277.82 Aligned_cols=164 Identities=29% Similarity=0.404 Sum_probs=135.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++||+++|++.+++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 4789999999964457999999999999999999999999999999999999999999987541 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+. ..++.+++... ..... ...+..+++.+++. +..++++.+|||||+||++||++++.+|++
T Consensus 81 ~~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999998632222 23666655321 11111 23567789999996 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.++..+.+.|.++
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l 183 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDL 183 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=271.72 Aligned_cols=164 Identities=24% Similarity=0.301 Sum_probs=135.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 2 NKIEIRDLKVSFG-QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred ceEEEEeeEEEEC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 3689999999996 46799999999999999999999999999999999999974 7999987542
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCC--CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG--KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~--~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +....++.+++... ... .. ...+.+++..+++.. ...++++.+||||||||++||
T Consensus 81 ~~~i~~v~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~la 158 (250)
T PRK14247 81 RRRVQMVFQIPN--PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIA 158 (250)
T ss_pred hccEEEEeccCc--cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHH
Confidence 35899999863 33445666666421 111 11 234667888898842 346789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14247 159 RALAFQPEVLLADEPTANLDPENTAKIESLFLEL 192 (250)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=278.87 Aligned_cols=160 Identities=23% Similarity=0.299 Sum_probs=134.5
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKF 342 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~i 342 (443)
.++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 5779999995 578999999999999999999999999999999999999999999987431 258
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++. +....++.+++... .... ....+.+++..+++. +..++++.+|||||||||+||+|++.+|++
T Consensus 105 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 105 SMVFQSFA--LLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred EEEecCcc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999863 34445666665421 1111 123567789999986 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=268.28 Aligned_cols=162 Identities=28% Similarity=0.430 Sum_probs=129.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~~ 345 (443)
|+++|++++|++.+++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 78999999996445799999999999999999999999999999999999999999998754 1358999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +.. .++.+++...........+...+..+++.. ...++++.+|||||||||+||++|+.+|+
T Consensus 83 ~q~~~--~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 83 LQDTF--LFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred cCCch--hhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99863 222 366666643222223334444444443321 23456689999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~ 185 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKL 185 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=273.76 Aligned_cols=165 Identities=22% Similarity=0.298 Sum_probs=134.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
+.++|+++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 18 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 18 KEHILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCceEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 456899999999996 5679999999999999999999999999999999999864 7899997743
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++.. ...++++.+||||||||+
T Consensus 97 ~~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKPN--PFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 125899999863 222 2666665421 1111 1 234566777887742 346789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 210 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL 210 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=273.92 Aligned_cols=161 Identities=25% Similarity=0.370 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------------ 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 338 (443)
|+++||++.|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 47899999996 46899999999999999999999999999999999999999999997743
Q ss_pred ------ceEEEEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHH
Q psy208 339 ------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +....++.+++... .... ....+.+++..+|+. +..++++.+|||||+||++
T Consensus 80 ~~~~~~~~~i~~v~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~ 156 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFN--LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVA 156 (252)
T ss_pred hHHHHHhhCeEEEecCcc--cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHH
Confidence 124899999853 44445666665421 1111 123467789999986 5678899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (252)
T TIGR03005 157 IARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192 (252)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=263.96 Aligned_cols=152 Identities=30% Similarity=0.407 Sum_probs=125.0
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEEEeccCcccccc
Q psy208 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFGYFSQHHVDQLD 354 (443)
Q Consensus 288 ~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig~~~Q~~~~~l~ 354 (443)
+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|++...+.
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 3567999999999999999999999999999999999999999999987531 248999998631222
Q ss_pred cchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 355 MNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 355 ~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
..++.+++... ..... .+.+..++..+++. +..++++.+||||||||++|||||+.+|++|||||||++||+
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 160 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS-GLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP 160 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCch-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 24666665321 11112 23467788899986 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccc
Q psy208 429 ETIEALGKAINKY 441 (443)
Q Consensus 429 ~s~~~l~~~L~~~ 441 (443)
.+++.+.+.|.++
T Consensus 161 ~~~~~~~~~l~~~ 173 (190)
T TIGR01166 161 AGREQMLAILRRL 173 (190)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=286.34 Aligned_cols=164 Identities=26% Similarity=0.387 Sum_probs=140.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGY 344 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~ 344 (443)
.++|+++|++++|+ +.++|+++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||
T Consensus 17 ~~~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 17 TPLLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CceEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 56899999999996 467999999999999999999999999999999999999999999988642 25999
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++ .+.+..++.+++.... .... .+++.++++.+++. ...++++.+|||||||||+|||||+.+|++||
T Consensus 96 vfQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99986 3566778888875321 1112 24567889999996 57789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||..+++.+.+.|.++
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l 195 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDI 195 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999998777653
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=275.78 Aligned_cols=167 Identities=20% Similarity=0.280 Sum_probs=137.4
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-------
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN------- 339 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~------- 339 (443)
.++++|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 35 ~~~~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 35 SGETVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCCceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 3567899999999996 4679999999999999999999999999999999999987 68999987431
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh--C---CCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA--F---PGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~---~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +... ++.+++... . +......+..++..+++.. +..++++.+|||||||||+
T Consensus 114 ~~~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~ 190 (285)
T PRK14254 114 DPVALRRRIGMVFQKPN--PFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLC 190 (285)
T ss_pred chHhhhccEEEEecCCc--cCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHH
Confidence 25899999863 2222 666665421 1 1112345677888888742 3567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++|+.+|+||||||||++||+.+++.+.++|.++.
T Consensus 191 LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~ 227 (285)
T PRK14254 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227 (285)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998763
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=271.32 Aligned_cols=164 Identities=19% Similarity=0.298 Sum_probs=134.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEEcCc---------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP----TAGTRTVHRN---------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~~---------~~i 342 (443)
+|+++|++++| + +++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+. ..+
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i 81 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKI 81 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceE
Confidence 68999999999 3 5799999999999999999999999999999999999999 9999987542 359
Q ss_pred EEeccCcccccccchhHHHHHHH---hC-CCCCHHHHHHHHhcCCCChh--hhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA---AF-PGKPQEEYRRQLGGFGVSGD--LALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~---~~-~~~~~~~~~~~L~~~gl~~~--~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+|++|++...+.+..++.+.+.. .. .....+.+.+++..+++... ..++++.+|||||+|||+|||||+.+|++
T Consensus 82 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 161 (254)
T PRK10418 82 ATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF 161 (254)
T ss_pred EEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 99999863223333343333211 11 11234567888999998642 46789999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~L~~~ 186 (254)
T PRK10418 162 IIADEPTTDLDVVAQARILDLLESI 186 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=285.69 Aligned_cols=162 Identities=25% Similarity=0.408 Sum_probs=139.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC--ceEEEcCc---------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA--GTRTVHRN---------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~--G~i~~~~~---------~~ig~ 344 (443)
.|+++||+++|+ +..+|+|+||+|.+|++++|+|||||||||||++|+|+++|++ |+|.+.+. ..+||
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~ 83 (362)
T TIGR03258 5 GIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLAL 83 (362)
T ss_pred EEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 4679999999999999999999999999999999999999999 99988642 35999
Q ss_pred eccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++. +.+..++.+++.... .... ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 84 vfQ~~~--l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llL 160 (362)
T TIGR03258 84 LFQNYA--LFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLL 160 (362)
T ss_pred EECCcc--cCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999863 556678887775321 1112 24577889999996 57889999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.|.+.|.++
T Consensus 161 LDEP~s~LD~~~r~~l~~~l~~l 183 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEIAAL 183 (362)
T ss_pred EcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999988764
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=270.87 Aligned_cols=163 Identities=25% Similarity=0.348 Sum_probs=133.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 4 VMLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred cEEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 5799999999996 568999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCC--CHHHHHHHHhcC-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGK--PQEEYRRQLGGF-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~--~~~~~~~~L~~~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+|++|++. +....++.+++... .... ....+..+++.+ ++. +..++++.+||||||||++||++++.+|++|
T Consensus 83 ~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~il 159 (237)
T PRK11614 83 AIVPEGRR--VFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLL 159 (237)
T ss_pred EEeccCcc--cCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999853 33445666666431 1111 122345566666 353 4567889999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~ 183 (237)
T PRK11614 160 LLDEPSLGLAPIIIQQIFDTIEQL 183 (237)
T ss_pred EEcCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=283.57 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=137.7
Q ss_pred CeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEEcCc--------
Q psy208 275 PILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS----PTAGTRTVHRN-------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~-------- 339 (443)
++|+++||+++|+. ...+|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999942 3469999999999999999999999999999999999997 58999987531
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHh-----CCC-------CCHHHHHHHHhcCCCCh--hhhhccCCCCCH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAA-----FPG-------KPQEEYRRQLGGFGVSG--DLALQFVGSLSG 398 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~-----~~~-------~~~~~~~~~L~~~gl~~--~~~~~~~~~LSg 398 (443)
..++|++|++...+++..++.+.+... ... .....+.++|..+|+.. +..++++.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 259999999754455555655554321 100 11245778999999963 346789999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||+||+||+.+|++|||||||++||+.++..+.+.|+++
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 204 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL 204 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999864
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=296.34 Aligned_cols=163 Identities=31% Similarity=0.470 Sum_probs=139.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
.|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++|+
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 4999999999976567999999999999999999999999999999999999999999998752 369999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. + .+.|+.+++....+..+++++.+.+...++.... .+. ....||||||||++||||++++|+
T Consensus 414 ~Q~~~--l-F~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 414 AQDAH--L-FDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred ccCcc--c-ccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCC
Confidence 99974 2 2457888887555556778888888888774311 122 235799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||.++.+.+.+.|.+.
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~ 516 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAA 516 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=277.28 Aligned_cols=165 Identities=27% Similarity=0.365 Sum_probs=136.1
Q ss_pred CeEEEeeeEEEeCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVP-----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 338 (443)
++|+++|++++|++ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 57999999999963 24699999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
...+||++|++...+. ..++.+++... ..... ...+..++..+|+. ...++++.+||||||||++||++|+
T Consensus 83 ~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHH
Confidence 1248999998632232 23444444311 11111 34567889999996 5778999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..|.+.|.++
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l 190 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKEL 190 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999865
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=281.99 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=136.7
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC----CCCceEEEcCc---------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS----PTAGTRTVHRN--------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~----p~~G~i~~~~~--------- 339 (443)
+|+++||++.|+.. ..+|+||||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 68999999999642 369999999999999999999999999999999999997 48999987542
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekqRl 404 (443)
..++|++|++...+++..++.+.+.. ..... ..+.+.++|..+|+.. ...++++++|||||+|||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 14999999975445655554433321 11111 2345778999999963 356789999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l 199 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=280.52 Aligned_cols=155 Identities=30% Similarity=0.384 Sum_probs=130.0
Q ss_pred EEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEeccCccccc
Q psy208 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFSQHHVDQL 353 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~Q~~~~~l 353 (443)
++|+ ++++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+||++|++. +
T Consensus 1 k~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~--~ 77 (302)
T TIGR01188 1 KVYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS--V 77 (302)
T ss_pred CeeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCC--C
Confidence 3574 567999999999999999999999999999999999999999999988542 25899999853 4
Q ss_pred ccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 354 DMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 354 ~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
....++.+++.. ...+.. ...+..++..+++. ...++++.+|||||||||+||+||+.+|++|||||||+|||
T Consensus 78 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 156 (302)
T TIGR01188 78 DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLD 156 (302)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 455666666542 111211 23577889999996 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccc
Q psy208 428 IETIEALGKAINKYT 442 (443)
Q Consensus 428 ~~s~~~l~~~L~~~~ 442 (443)
+.+++.+.+.|.++.
T Consensus 157 ~~~~~~l~~~l~~~~ 171 (302)
T TIGR01188 157 PRTRRAIWDYIRALK 171 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=264.80 Aligned_cols=159 Identities=30% Similarity=0.426 Sum_probs=133.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q 347 (443)
++++||+++|+ . .+.|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 1 ~~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (213)
T TIGR01277 1 LALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 (213)
T ss_pred CeEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEec
Confidence 47899999995 2 578999999999999999999999999999999999999999987542 34899999
Q ss_pred CcccccccchhHHHHHHHhC-C--C---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAAF-P--G---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~-~--~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++.... . . .....+.+++..+++. +..++++.+|||||+||++||++++.+|++|||||
T Consensus 78 ~~~--~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 154 (213)
T TIGR01277 78 ENN--LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDE 154 (213)
T ss_pred cCc--cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 444556666654211 1 1 1234567789999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 155 Pt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 155 PFSALDPLLREEMLALVKQL 174 (213)
T ss_pred CCccCCHHHHHHHHHHHHHH
Confidence 99999999999999998765
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=260.53 Aligned_cols=160 Identities=24% Similarity=0.329 Sum_probs=132.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~ 348 (443)
+|+++|++++|+ ++.+++ +||+|++|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|+
T Consensus 1 ~l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (195)
T PRK13541 1 MLSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHN 78 (195)
T ss_pred CeEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCC
Confidence 478999999995 455665 99999999999999999999999999999999999999988652 247899987
Q ss_pred cccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 349 HVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
+. +....++.+++...... .....+..++..+++. +..++++.+||||||||++||++++.+|++|||||||++||
T Consensus 79 ~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 79 LG--LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLH-DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred cC--CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCH-hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 52 33455666665432111 1244667788889986 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcc
Q psy208 428 IETIEALGKAINK 440 (443)
Q Consensus 428 ~~s~~~l~~~L~~ 440 (443)
+.+++.+.+.|..
T Consensus 156 ~~~~~~l~~~l~~ 168 (195)
T PRK13541 156 KENRDLLNNLIVM 168 (195)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=268.54 Aligned_cols=160 Identities=30% Similarity=0.494 Sum_probs=134.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ +.. .++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~ 77 (232)
T PRK10771 1 MLKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLF 77 (232)
T ss_pred CeEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEe
Confidence 478999999996 333 4999999999999999999999999999999999999999987542 3589999
Q ss_pred cCcccccccchhHHHHHHHhC-CC-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-PG-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +....++.+++.... .. .....+..++..+|+. ...++++..||||||||++||++++.+|++||||
T Consensus 78 q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 154 (232)
T PRK10771 78 QENN--LFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLD 154 (232)
T ss_pred cccc--cccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9853 444557777664211 11 1134577889999986 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 155 EP~~gLD~~~~~~~~~~l~~~ 175 (232)
T PRK10771 155 EPFSALDPALRQEMLTLVSQV 175 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=272.11 Aligned_cols=165 Identities=22% Similarity=0.245 Sum_probs=134.9
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc--------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN-------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~-------- 339 (443)
+.++|+++||+++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 10 ~~~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 346899999999996 4679999999999999999999999999999999999987 68999987531
Q ss_pred -----eEEEEeccCcccccccchhHHHHHHHhC--CCC---CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 -----LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK---PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 -----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~---~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... ... ..+.+..++..+++. ....++++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQPN--PFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCCc--cch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 24899999863 233 36666664211 111 123456677777763 235678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~ 200 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=270.59 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=134.8
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++| ++|+|.+.+
T Consensus 5 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 5 EAIIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred CceEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 35899999999996 46799999999999999999999999999999999999987 489998743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++.. + ..++.+++... ... .. ...+...+..+++. .+..++++.+||||||||++
T Consensus 84 ~~~~~~i~~v~q~~~~-~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~ 160 (254)
T PRK14273 84 LELRRKIGMVFQTPNP-F--LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLC 160 (254)
T ss_pred HHHhhceEEEeecccc-c--cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHH
Confidence 1248999998632 2 25666665421 111 11 23456777888763 24567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||+|+.+|++|||||||++||+.++..+.+.|.++.
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998763
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=267.56 Aligned_cols=162 Identities=31% Similarity=0.458 Sum_probs=128.6
Q ss_pred EEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
++++|+++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 357999999999999999999999999999999999999999999988642 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHH---------HhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ---------LGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++...........+... +..+ ++. ...++++.+|||||||||+|||+++.+
T Consensus 81 ~~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQENV--LF-NRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCch--hc-cchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 999863 22 34667766432222222233222 2333 332 234678899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||++||+.+++.+.+.|.++.
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~ 185 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDIC 185 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=302.22 Aligned_cols=164 Identities=28% Similarity=0.429 Sum_probs=140.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-++++||+|+|+.+ .++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++ +..+|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig 550 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVG 550 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhee
Confidence 58999999999765 4699999999999999999999999999999999999999999999874 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. -...++.+++....+..+.+++.+.+...|...... ......||||||||++||||++++
T Consensus 551 ~V~Q~~~---Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 551 YVLQDPF---LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EEcccch---hhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 9999863 235688888887777777777777766666543222 234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|+|||||||||+||+++.+.+.+.|.++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~ 656 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQIL 656 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHh
Confidence 99999999999999999999999987653
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=272.38 Aligned_cols=161 Identities=30% Similarity=0.418 Sum_probs=135.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 68999999996 568999999999999999999999999999999999999999999988541 248999
Q ss_pred ccCcccccccchhHHHHHHHhC-------C-C--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF-------P-G--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~-------~-~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +....++.+++.... . . ...+.+.+++..+++. +..++++..|||||+||++||++++.+|+
T Consensus 81 ~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 81 EQDSD--TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred cccCc--cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99863 333456666653211 0 0 1123567889999985 56789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=272.42 Aligned_cols=164 Identities=22% Similarity=0.269 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++||++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 45799999999996 56799999999999999999999999999999999999975 899998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC------CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK------PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+||||||||+
T Consensus 96 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 96 VELRARVGMVFQKPN--PFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred HHHhhceEEEecCCC--CCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 124899999863 222 2666665421 1111 1234577888899853 245788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l 209 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL 209 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=273.73 Aligned_cols=166 Identities=26% Similarity=0.326 Sum_probs=135.1
Q ss_pred CCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 274 PPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.++|+++|++++|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 3579999999999643 46999999999999999999999999999999999999999999988542 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|++|++... ....++.+++... ..... ...+..++..+++. +..++++..||||||||++||+|++.+|+
T Consensus 85 i~~v~q~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPDNQ-FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChHHh-cccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 89999986312 2223434433211 11111 23466788999986 56788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~ 188 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKV 188 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=270.64 Aligned_cols=164 Identities=26% Similarity=0.310 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
..+|+++|+++.|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+++
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 45799999999996 4679999999999999999999999999999999999986 5899997753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++... ..... .+.+.+++..+++.. ...++++.+|||||+||++
T Consensus 90 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 166 (260)
T PRK10744 90 ALLRAKVGMVFQKPT--PFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLC 166 (260)
T ss_pred HHHhcceEEEecCCc--cCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHH
Confidence 125899999863 222 4666665421 11111 234667888888742 3567889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 202 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=270.86 Aligned_cols=163 Identities=24% Similarity=0.312 Sum_probs=133.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~----------- 339 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 4 ~l~i~~v~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYG-SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEEC-CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 689999999996 46799999999999999999999999999999999999974 7999987531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +....++.+++... .... . .+.+..++..+++. ....++++.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 83 VRRTIGMVFQRPN--PFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HhcceEEEccccc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 24899999853 34445666665421 1111 1 23456678888874 2456789999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=260.44 Aligned_cols=165 Identities=28% Similarity=0.449 Sum_probs=141.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++||+..|+ ...+|++|||++.+|++++|+|+||+|||||||+|+|+.+|.+|+|.+.+. ..+
T Consensus 2 ~mL~v~~l~~~YG-~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 2 PMLEVENLSAGYG-KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred CceeEEeEeeccc-ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 5799999999996 578999999999999999999999999999999999999999999998642 359
Q ss_pred EEeccCcccccccchhHHHHHHHh-CCCC---C-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA-FPGK---P-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~-~~~~---~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
+|+||.. ..++..|+.+++... +... . ......+...|-...+..+++.++|||||||.++|||||+.+|++|
T Consensus 81 ~~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklL 158 (237)
T COG0410 81 AYVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLL 158 (237)
T ss_pred EeCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEE
Confidence 9999974 577888999988632 1111 1 1125567777765567888999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||.||-|.-.+.+.++|++..
T Consensus 159 LLDEPs~GLaP~iv~~I~~~i~~l~ 183 (237)
T COG0410 159 LLDEPSEGLAPKIVEEIFEAIKELR 183 (237)
T ss_pred EecCCccCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=270.67 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=134.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 3 FAIETVNLRVYYG-SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred ceEEEEeEEEEeC-CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 4799999999996 46799999999999999999999999999999999999987 4999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCC--CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG--KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~--~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +....++.+++... ... .. ...+..++..+++.. ...++++.+||||||||++
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 159 (253)
T PRK14267 82 EVRREVGMVFQYPN--PFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLV 159 (253)
T ss_pred HHhhceeEEecCCc--cCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHH
Confidence 25899999863 34445666665421 111 01 134567788888742 3467889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 195 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL 195 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=258.90 Aligned_cols=163 Identities=28% Similarity=0.376 Sum_probs=136.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----------ceEEEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------NLKFGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------~~~ig~~ 345 (443)
||++.+++++|+....+++||||++..|+++||+|+|||||||+||+|++++.|++|.|++.+ ..+||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999997534489999999999999999999999999999999999999999998853 2357877
Q ss_pred ccCcccccccchhHHHHHHHh---C---CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAA---F---PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~---~---~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+-. ..+....|..+++... + ....+.++..+.+.|++. +..+++++.+|.|+||||+|||||+++|+++||
T Consensus 81 ~~e--~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 81 FGE--RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred cCC--cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 743 2455666776665421 1 112245667788889985 688999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||||+.+...+.+.+.+.
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~ 179 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQL 179 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHh
Confidence 9999999999999999988764
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=282.93 Aligned_cols=159 Identities=28% Similarity=0.434 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ce
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 340 (443)
||++ ||+++|+ ++ .+ |+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ ..
T Consensus 1 ~l~~-~l~k~~~-~~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 1 MLEL-NFKQQLG-DL-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred CeEE-EEEEEeC-CE-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 4778 9999996 33 33 99999999999999999999999999999999999999998743 12
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
.++|++|++. +.+..++.+++...........+.+++..+|+. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 77 ~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD 153 (352)
T PRK11144 77 RIGYVFQDAR--LFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD 153 (352)
T ss_pred CEEEEcCCcc--cCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 5899999863 455667777775332223345678899999996 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 154 EPts~LD~~~~~~l~~~L~~l 174 (352)
T PRK11144 154 EPLASLDLPRKRELLPYLERL 174 (352)
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999998764
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.66 Aligned_cols=165 Identities=22% Similarity=0.325 Sum_probs=132.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-----ceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-----GTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-----G~i~~~~---------- 338 (443)
.+.++++||++.|+ .+.+|+|||+.|+++.++||+||+|||||||||++........ |+|.+.+
T Consensus 5 ~~~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 35799999999996 6789999999999999999999999999999999999887765 7777653
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCC---ChhhhhccCCCCCHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGV---SGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl---~~~~~~~~~~~LSgGekqRl~l 406 (443)
+.++|+++|.|.. ++ .++++++.... .+.. ++.++..|....+ -.+.+++++..|||||+|||+|
T Consensus 84 ~~lRr~vGMVFQkPnP-Fp--~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcI 160 (253)
T COG1117 84 VELRRRVGMVFQKPNP-FP--MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCI 160 (253)
T ss_pred HHHHHHheeeccCCCC-CC--chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHH
Confidence 2369999998742 22 67788775321 1111 2234444544444 2356778899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|+||||||||++|||.+...+++.|.+++
T Consensus 161 ARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk 196 (253)
T COG1117 161 ARALAVKPEVLLMDEPTSALDPISTLKIEELITELK 196 (253)
T ss_pred HHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=264.58 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=133.9
Q ss_pred CCeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 274 PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
.++|+++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999642 46999999999999999999999999999999999999999999987642 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHH---------HHHHHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE---------EYRRQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
.++|++|++. +. ..++.+++.......... .+..++..+ |+. ...++++.+|||||||||+||++
T Consensus 89 ~i~~~~q~~~--l~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 89 KVSLVGQEPV--LF-ARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hEEEEecccH--HH-hhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhcccccc-chhhcCCCcCCHHHHHHHHHHHH
Confidence 5899999863 22 246666664222111111 124556666 664 35678899999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 197 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWP 197 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998753
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=279.39 Aligned_cols=169 Identities=21% Similarity=0.361 Sum_probs=138.8
Q ss_pred CCCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCc-------
Q psy208 273 SPPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRN------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~------- 339 (443)
..++|+++||++.|+. ...+++|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.+++.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 3568999999999952 246999999999999999999999999999999999999996 999987542
Q ss_pred --------eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCCh--hhhhccCCCCCHHHHH
Q psy208 340 --------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSG--DLALQFVGSLSGGQKS 402 (443)
Q Consensus 340 --------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekq 402 (443)
..++|++|++...+++..++.+++.. ...... ...+.++|+.+|+.. +..++++++|||||+|
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~Q 168 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQ 168 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHH
Confidence 25999999975456666665554422 111122 235677899999863 2357899999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||+||+.+|++||+||||++||+.++..+.+.|.++
T Consensus 169 Rv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (330)
T PRK09473 169 RVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207 (330)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=263.59 Aligned_cols=163 Identities=32% Similarity=0.438 Sum_probs=135.4
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++|+++.|+++ +.+|+|+||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 47899999999632 57999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++|++|++. +....++.+++... ..... ...+..+++.+|+. +..++++.+||+|||||++||++++
T Consensus 81 ~~~i~~~~q~~~--~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAHN--LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCChh--hcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 35899999863 33344555554321 11111 23567889999985 5678899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~ 187 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKL 187 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=295.03 Aligned_cols=164 Identities=29% Similarity=0.395 Sum_probs=140.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ..
T Consensus 9 ~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 9 PPLLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CceEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 35899999999996 567999999999999999999999999999999999999999999987541 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+||++|++. +....++.+++...... ...+.+..++..+++. ...++++.+|||||||||+||++|+.+|++|||
T Consensus 88 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllL 164 (510)
T PRK15439 88 IYLVPQEPL--LFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILIL 164 (510)
T ss_pred EEEEeccCc--cCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 899999863 44556777776432211 1234577889999996 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~ 186 (510)
T PRK15439 165 DEPTASLTPAETERLFSRIREL 186 (510)
T ss_pred ECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=297.32 Aligned_cols=163 Identities=27% Similarity=0.475 Sum_probs=134.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.....+||++|++. +..
T Consensus 1 ml~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~--~~~ 77 (530)
T PRK15064 1 MLSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQF--AFE 77 (530)
T ss_pred CEEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--cCC
Confidence 489999999996 56899999999999999999999999999999999999999999999876667999999853 223
Q ss_pred chhHHHHHHHh----------------CC----------------------CCCHHHHHHHHhcCCCChhhhhccCCCCC
Q psy208 356 NLRCVQLLEAA----------------FP----------------------GKPQEEYRRQLGGFGVSGDLALQFVGSLS 397 (443)
Q Consensus 356 ~~~~~~~~~~~----------------~~----------------------~~~~~~~~~~L~~~gl~~~~~~~~~~~LS 397 (443)
..++.+++... .+ ......+..++..+|+.....++++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 33433332210 00 01124567789999996434457899999
Q ss_pred HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 398 gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||+||++|+.+|++|||||||||||+.++.+|.+.|.++
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~ 201 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER 201 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999998753
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=263.78 Aligned_cols=157 Identities=28% Similarity=0.370 Sum_probs=129.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LK 341 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ 341 (443)
+++ ||+++|++ +.+ |+||+|.+ ++++|+||||||||||+++|+|+++|++|+|.+.+. ..
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 344 99999964 444 99999999 999999999999999999999999999999987531 25
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
++|++|++. +....++.+++...... .....+.+++..+++. ...++++.+||||||||++||++++.+|++|
T Consensus 77 i~~~~q~~~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 153 (214)
T cd03297 77 IGLVFQQYA--LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELL 153 (214)
T ss_pred EEEEecCCc--cCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999853 34445666665421111 1234567889999986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.+.+.|.++
T Consensus 154 llDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 154 LLDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=264.95 Aligned_cols=163 Identities=28% Similarity=0.437 Sum_probs=129.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEe
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~ 345 (443)
|+++|++++|++++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 478999999964467999999999999999999999999999999999999999999988541 248999
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+|++. +. ..++.+++...........+...+..+++.. ...++++..|||||||||+||++|+.+|+
T Consensus 81 ~q~~~--~~-~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ 157 (236)
T cd03253 81 PQDTV--LF-NDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPP 157 (236)
T ss_pred CCCCh--hh-cchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99863 22 2477776643222223333333333333311 12456688999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||||++||+.+++.+.+.|.++.
T Consensus 158 llllDEP~~~LD~~~~~~l~~~l~~~~ 184 (236)
T cd03253 158 ILLLDEATSALDTHTEREIQAALRDVS 184 (236)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999997653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=272.48 Aligned_cols=166 Identities=30% Similarity=0.394 Sum_probs=137.5
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC---ceEEEcCc----------
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA---GTRTVHRN---------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~---G~i~~~~~---------- 339 (443)
..+|+++|+++.|++ .+++|+++||+|.+|++++|+||||||||||+++|+|+++|++ |+|.+.+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 357999999999964 2469999999999999999999999999999999999999998 89987531
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
..+||++|++.. .....++.+++... ...... +.+..++..+++. +..++++..|||||+||++||+||+.
T Consensus 83 ~~~ig~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPDN-QFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHHH-hhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 258999998632 22345666666421 112222 3467789999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l 189 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKL 189 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=262.58 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=132.5
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 7899999999643 4799999999999999999999999999999999999999999998754 135899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. ..++.+++.. +......++...+..+++.... .++++..||+||+||++|||+++.+|
T Consensus 83 ~~q~~~--l~-~~tv~enl~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 83 IPQDPV--LF-SGTIRSNLDP-FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred ECCCCc--cc-cchHHHHhCc-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999864 22 2366666532 2223345566666666664221 23688999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++|||||||++||+.+++.+.+.|.++.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~ 186 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAF 186 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999998753
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=269.17 Aligned_cols=164 Identities=22% Similarity=0.297 Sum_probs=134.2
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 10 ~~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 45799999999996 56799999999999999999999999999999999999985 899988743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ..... ...+..+++.+++. ....++++.+|||||+|||+|
T Consensus 89 ~~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQKPN--PFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 124899999863 222 4666665421 11112 22456788888874 234678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 200 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=284.89 Aligned_cols=148 Identities=23% Similarity=0.338 Sum_probs=125.7
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEEEEeccCccccccc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~ig~~~Q~~~~~l~~ 355 (443)
.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|++. +.+
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--l~~ 119 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--LMP 119 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc--CCC
Confidence 4899999999999999999999999999999999999999999987531 25999999863 445
Q ss_pred chhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 356 NLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 356 ~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
..++.+++... ..... .+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~ 198 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHH
Confidence 56777766421 11111 24567889999996 5678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccc
Q psy208 430 TIEALGKAINKY 441 (443)
Q Consensus 430 s~~~l~~~L~~~ 441 (443)
+++.+.+.|.++
T Consensus 199 ~r~~l~~~L~~l 210 (400)
T PRK10070 199 IRTEMQDELVKL 210 (400)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=297.79 Aligned_cols=164 Identities=32% Similarity=0.497 Sum_probs=135.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
+.+|+++||+++|++++++|+|+||+|.+|++++|+|||||||||||++|+|+++|++|+|.+.....+||++|++. +
T Consensus 2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~--~ 79 (552)
T TIGR03719 2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQ--L 79 (552)
T ss_pred cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCC--C
Confidence 35799999999996346899999999999999999999999999999999999999999999876678999999863 3
Q ss_pred ccchhHHHHHHHh-----------------C--CCCC-----------------------HHHHHHHHhcCCCChhhhhc
Q psy208 354 DMNLRCVQLLEAA-----------------F--PGKP-----------------------QEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 354 ~~~~~~~~~~~~~-----------------~--~~~~-----------------------~~~~~~~L~~~gl~~~~~~~ 391 (443)
....++.+++... + .... ...+..++..+|+. ..++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~ 157 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWDA 157 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--cccC
Confidence 3334544443210 0 0000 12345567778874 2578
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++.+|||||||||+||++|+.+|++|||||||||||+.++++|.+.|.++
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~ 207 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY 207 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999876
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=296.33 Aligned_cols=163 Identities=25% Similarity=0.339 Sum_probs=137.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 3 ALLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred ceEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 5799999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC------CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++ .+....++.+++.... .... ...+.+++..+|+. +..++++.+|||||||||+||+||+.
T Consensus 82 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~ 158 (501)
T PRK10762 82 GIIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSF 158 (501)
T ss_pred EEEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhc
Confidence 9999985 2444567777664211 1111 23467789999996 45688999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l 187 (501)
T PRK10762 159 ESKVIIMDEPTDALTDTETESLFRVIREL 187 (501)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988765
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=272.01 Aligned_cols=164 Identities=26% Similarity=0.365 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
+|+++||+++|++. .++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 79999999999632 3599999999999999999999999999999999999999999998753 1258
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++.. .....++.+++... ...... +.+..++..+++. +..++++..|||||+||++|||+|+.+|++
T Consensus 84 ~~v~q~~~~-~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPDN-QFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHHH-hhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999998631 22234666666421 111122 3456788889985 567889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|.++
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l 186 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEI 186 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998765
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=266.44 Aligned_cols=161 Identities=27% Similarity=0.360 Sum_probs=134.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|.++|++++|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~-~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred CEEEeEEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 46899999996 46899999999999999999999999999999999999999999998853 235899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+..++..+|+. +..++.+..||+||+||++||++++.+|++|||||
T Consensus 80 ~~~--~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (232)
T cd03300 80 NYA--LFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDE 156 (232)
T ss_pred ccc--cCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 33344556655321 1111 133566788889996 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 P~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 157 PLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999765
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=267.60 Aligned_cols=167 Identities=26% Similarity=0.341 Sum_probs=134.9
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcCc-------
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHRN------- 339 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~------- 339 (443)
.++++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+.
T Consensus 8 ~~~~~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~ 86 (259)
T PRK14274 8 MKQEVYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKV 86 (259)
T ss_pred cCCceEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccccc
Confidence 3567899999999996 4679999999999999999999999999999999999987 3 6899876431
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqR 403 (443)
..++|++|++. +... ++.+++... ... .. ...+..+++.+++.. +..++++.+||||||||
T Consensus 87 ~~~~~~~~i~~v~q~~~--~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qr 163 (259)
T PRK14274 87 DLVELRKNIGMVFQKGN--PFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQR 163 (259)
T ss_pred CHHHHhhceEEEecCCc--cccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHH
Confidence 24899999863 2222 666665321 111 11 223556788888742 34678999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++||++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 164 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 202 (259)
T PRK14274 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202 (259)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998753
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=258.38 Aligned_cols=143 Identities=30% Similarity=0.512 Sum_probs=116.2
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccch
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~ 357 (443)
+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. .+. + ....
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~-~~~---~-----~~~~- 69 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK-DLA---S-----LSPK- 69 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE-ECC---c-----CCHH-
Confidence 4789999996 467999999999999999999999999999999999999999999987642 111 1 0000
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.....+.. +..++..+|+. +..++++.+|||||+||++|||+++.+|++|||||||++||+.+++.+.+.
T Consensus 70 ~~~~~i~~---------~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 70 ELARKIAY---------VPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHHhH---------HHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 00000100 01177888886 456788999999999999999999999999999999999999999999999
Q ss_pred Hccc
Q psy208 438 INKY 441 (443)
Q Consensus 438 L~~~ 441 (443)
|.++
T Consensus 140 l~~~ 143 (180)
T cd03214 140 LRRL 143 (180)
T ss_pred HHHH
Confidence 9765
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-33 Score=266.85 Aligned_cols=162 Identities=23% Similarity=0.307 Sum_probs=133.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc-----------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN-----------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-----------~~ 341 (443)
+++++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+. ..
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 578999999996 5689999999999999999999999999999999999974 79999987541 25
Q ss_pred EEEeccCcccccccchhHHHHHHHh--CCC------CCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHHHh
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--FPG------KPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~al 410 (443)
++|++|++. +.. .++.+++... ... .....+..+++.+++.. +..++++.+||||||||++|||++
T Consensus 81 i~~~~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 157 (246)
T PRK14269 81 VGMVFQQPN--VFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARAL 157 (246)
T ss_pred EEEEecCCc--ccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHH
Confidence 899999863 222 4666666321 111 11234567889999853 346788999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 188 (246)
T PRK14269 158 AIKPKLLLLDEPTSALDPISSGVIEELLKEL 188 (246)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999865
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=267.44 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=134.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
+++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+| ++|+|.+.+
T Consensus 2 ~~~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 2 KIKMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred ccEEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 46899999999996 46799999999999999999999999999999999999875 799998753
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHH--hCCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++.. ..... . ...+..+++.+++.. +..++++..||||||||++
T Consensus 81 ~~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~ 157 (251)
T PRK14270 81 VELRKRVGMVFQKPN--PFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLC 157 (251)
T ss_pred HHHHhheEEEecCCC--cCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHH
Confidence 124899999863 222 566666532 11111 1 234567788888742 3467899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~ 194 (251)
T PRK14270 158 IARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELK 194 (251)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=295.81 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=137.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 4 ~~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 4 PYISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred ceEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 5799999999996 567999999999999999999999999999999999999999999987531 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC------CCC-------CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------PGK-------PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------~~~-------~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+|++|++. +....++.+++.... ... ....+..++..+|+. +..++++.+|||||||||+||++
T Consensus 83 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~a 159 (510)
T PRK09700 83 GIIYQELS--VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKT 159 (510)
T ss_pred EEEeeccc--ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHH
Confidence 99999853 344556666654211 010 123567789999996 56789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 191 (510)
T PRK09700 160 LMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191 (510)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998765
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=266.69 Aligned_cols=163 Identities=27% Similarity=0.375 Sum_probs=132.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CC---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SP---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p---~~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+. +| ++|+|.+.+
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 4 PILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 5799999999996 467999999999999999999999999999999999985 46 589998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+..++..+++.. +..++++.+|||||||||+|
T Consensus 83 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 159 (252)
T PRK14239 83 DLRKEIGMVFQQPN--PFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCI 159 (252)
T ss_pred hhhhcEEEEecCCc--cCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHH
Confidence 125999999863 222 4666665421 1111 1 234556788888642 34678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|++.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14239 160 ARVLATSPKIILLDEPTSALDPISAGKIEETLLGL 194 (252)
T ss_pred HHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=265.99 Aligned_cols=165 Identities=25% Similarity=0.351 Sum_probs=132.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 339 (443)
+++|+++||++.|+ ++.+|+++||+|.+|+++||+|+||||||||+++|+|+ ++|++|+|.+.+.
T Consensus 5 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 5 KPILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred CceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 35799999999996 46799999999999999999999999999999999998 5899999987431
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhC---------CCCC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAF---------PGKP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---------~~~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~ 405 (443)
..++|++|++. +....+..+++.... .... ...+..++..+++.....++++. .|||||+|||+
T Consensus 84 ~~~~~~~q~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~ 161 (252)
T CHL00131 84 LGIFLAFQYPI--EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNE 161 (252)
T ss_pred eeEEEEecccc--ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHH
Confidence 13778888753 233334444432110 0011 23456788999986445677887 59999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 197 (252)
T CHL00131 162 ILQMALLDSELAILDETDSGLDIDALKIIAEGINKL 197 (252)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999765
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.17 Aligned_cols=163 Identities=24% Similarity=0.349 Sum_probs=128.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~~ 341 (443)
+|+++|+++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+.+. ..
T Consensus 1 ~i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 1 MLSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred CeEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 478999999996 467999999999999999999999999999999999995 699999987541 24
Q ss_pred EEEeccCcccccccchhHHHHHHH------hCCC---CC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA------AFPG---KP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~------~~~~---~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~lA 407 (443)
++|++|++.. ....+...+... .... .. ...+...++.+++.....++++. .|||||||||+||
T Consensus 80 i~~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVE--IPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchh--ccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 8999998632 222121111110 0000 01 23456678888886555667775 7999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l 191 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=264.60 Aligned_cols=162 Identities=28% Similarity=0.427 Sum_probs=127.1
Q ss_pred EEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 277 LQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
|+++|+++.|++ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999963 24699999999999999999999999999999999999999999998754 13599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC----------hhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS----------GDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~----------~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +.. .++.+++...........+...+..+++. ....++++.+|||||+|||+||++++.+
T Consensus 81 ~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPV--LFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchh--hhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 9999853 222 36666664322222223333333333321 1234567899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~ 185 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRA 185 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=266.53 Aligned_cols=164 Identities=22% Similarity=0.303 Sum_probs=133.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 338 (443)
..|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 3589999999996 4679999999999999999999999999999999999986 4 689988753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +....++.+++... ... .. ...+..++..+++.. +..++++.+||||||||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 82 SIRRRVGMVFQKPN--PFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred HhhccEEEEecCCC--CCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 124899999853 34445666665421 111 11 234567788888753 34567899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 194 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=262.93 Aligned_cols=161 Identities=27% Similarity=0.437 Sum_probs=128.2
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|++++|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999643 27999999999999999999999999999999999999999999987541 24899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHH---------HHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR---------RQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++...........+. +.+..+ ++. ...++++.+||||||||++||++|+.+
T Consensus 81 ~~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDVF--LF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCCe--ec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 999863 22 246777764322222222222 233333 333 235678899999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.90 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=131.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR------------ 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~------------ 338 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|+ +|+|.+.+
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 689999999996 568999999999999999999999999999999999999874 89988743
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC-CH----HHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-PQ----EEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~~----~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +....++.+++... .... .. +.+...+..+++. ....++++.+|||||+||++||
T Consensus 83 ~~~~i~~~~q~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 83 MRRRVGMVFQKPN--PFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred hhceeEEEeccCc--cCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 125899999863 34445666666421 1111 12 2234455666542 2345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++++.+|++|||||||++||+.+++.+.+.|+++.
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 195 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLK 195 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998753
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=271.98 Aligned_cols=166 Identities=23% Similarity=0.261 Sum_probs=134.8
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
++++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+++
T Consensus 36 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 36 GKPHVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CceEEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 567899999999996 4679999999999999999999999999999999999864 4999998743
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . .+.+..++..+++. .+..++++..|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKPN--PFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCCC--CCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 125899999863 222 3777666421 1111 1 23455677777763 2456788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||+|+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~ 229 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR 229 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998753
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=257.14 Aligned_cols=158 Identities=22% Similarity=0.329 Sum_probs=125.6
Q ss_pred EEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 277 LQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 277 l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
|+++||+++|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+ .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--~i~~~~q~~~-- 76 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--SIAYVSQEPW-- 76 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--EEEEEecCch--
Confidence 4789999999653 3799999999999999999999999999999999999999999999876 7999999864
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+. ..++.+++.... ..........+..+++.. ...++++..||+|||||++|||+++.+|++||||||
T Consensus 77 l~-~~t~~enl~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP 154 (204)
T cd03250 77 IQ-NGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDP 154 (204)
T ss_pred hc-cCcHHHHhccCC-CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 22 347777764321 112223333343333321 123456789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHH-HHcc
Q psy208 423 TNHLDIETIEALGK-AINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~-~L~~ 440 (443)
|++||+.+++.+.+ ++..
T Consensus 155 ~~~LD~~~~~~l~~~ll~~ 173 (204)
T cd03250 155 LSAVDAHVGRHIFENCILG 173 (204)
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 99999999998887 4443
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=268.93 Aligned_cols=165 Identities=22% Similarity=0.252 Sum_probs=132.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++|+++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 18 HSVFEVEGVKVFYG-GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CceEEEeeEEEEeC-CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 46899999999996 46799999999999999999999999999999999999863 689987743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCC---CCHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG---KPQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~---~~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +.. .++.+++... ... .....+...+..+++. .+..++++..|||||+|||+||
T Consensus 97 ~~~~~~i~~v~q~~~--l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LA 173 (274)
T PRK14265 97 VKLRRQVGMVFQRPN--PFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIA 173 (274)
T ss_pred HHHhhcEEEEccCCc--ccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHH
Confidence 125899999863 222 2666665421 111 1123345667777763 2356788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 174 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 208 (274)
T PRK14265 174 RAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK 208 (274)
T ss_pred HHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998763
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=265.73 Aligned_cols=155 Identities=28% Similarity=0.369 Sum_probs=124.4
Q ss_pred EEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEeccCccccc
Q psy208 284 FEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFSQHHVDQL 353 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~Q~~~~~l 353 (443)
+.|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..++|++|+. ..+
T Consensus 29 ~~~~-~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 106 (236)
T cd03267 29 RKYR-EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQK-TQL 106 (236)
T ss_pred cccC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCc-ccc
Confidence 4453 467999999999999999999999999999999999999999999987542 2588987432 123
Q ss_pred ccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 354 DMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 354 ~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
....++.+++.. ...... ...+..++..+|+. +..++++..||||||||++||++++.+|++|||||||++||
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 344555555421 111111 23456778888986 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccc
Q psy208 428 IETIEALGKAINKY 441 (443)
Q Consensus 428 ~~s~~~l~~~L~~~ 441 (443)
+.+++.+.+.|.++
T Consensus 186 ~~~~~~l~~~l~~~ 199 (236)
T cd03267 186 VVAQENIRNFLKEY 199 (236)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999876
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=269.34 Aligned_cols=162 Identities=27% Similarity=0.380 Sum_probs=134.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--------CceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT--------AGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~--------~G~i~~~~~-------- 339 (443)
+|+++|++++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|+ +|+|.+.+.
T Consensus 1 ml~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 1 MLTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred CeEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 488999999995 568999999999999999999999999999999999999998 999987541
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC-CC---------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF-PG---------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~-~~---------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++.. ....++.+++.... .. .....+..++..+++. ...++++.+|||||+|||+|
T Consensus 80 ~~~~~~~~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 80 RLARLRAVLPQAAQP--AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHhhcEEecccCCC--CCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHH
Confidence 137899998532 22356666664311 10 0123467788899986 46789999999999999999
Q ss_pred HHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|+ .+|++|||||||++||+.+++.+.+.|.++
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 200 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRL 200 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 99999 599999999999999999999999999865
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=266.02 Aligned_cols=163 Identities=22% Similarity=0.313 Sum_probs=132.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC---CCC--CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI---ISP--TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~---~~p--~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+ ++| ++|+|.+.+.
T Consensus 2 ~~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 2 VKIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred cEEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 5799999999996 46799999999999999999999999999999999997 455 5899977531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++... .... ....+..++..+++.. ...++++.+||||||||++|
T Consensus 81 ~~~~~i~~v~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 157 (250)
T PRK14245 81 ELRKNVGMVFQRPN--PFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCI 157 (250)
T ss_pred HHhhheEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHH
Confidence 24899999863 222 3666665421 1111 1234667888888753 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14245 158 ARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192 (250)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=265.84 Aligned_cols=164 Identities=24% Similarity=0.304 Sum_probs=133.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~----------- 338 (443)
++|+++|+++.|+ ++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 2 PIIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred ceEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3799999999996 56899999999999999999999999999999999999874 899998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ... .. ...+...+..+++.. ...++++.+|||||+||++|
T Consensus 81 ~~~~~i~~~~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 157 (250)
T PRK14262 81 EYRKKVGMVFQKPT--PFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCI 157 (250)
T ss_pred HhhhhEEEEecCCc--cCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHH
Confidence 135999999863 222 4666665421 111 11 223566778888743 24678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 158 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~ 193 (250)
T PRK14262 158 ARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS 193 (250)
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=292.65 Aligned_cols=163 Identities=23% Similarity=0.280 Sum_probs=138.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc------------e
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN------------L 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~------------~ 340 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+.+. .
T Consensus 4 ~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 4 YLLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred ceEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 5799999999996 56899999999999999999999999999999999999996 8999987531 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhC-----CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAF-----PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~-----~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
.+||++|++. +....++.+++.... .... ...+.+++..+++. ...++++.+|||||||||+||+||+
T Consensus 83 ~i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~ 159 (506)
T PRK13549 83 GIAIIHQELA--LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALN 159 (506)
T ss_pred CeEEEEeccc--cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHh
Confidence 4999999863 444567777664211 0111 23567889999995 5678999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 160 KQARLLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999775
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=267.23 Aligned_cols=164 Identities=20% Similarity=0.244 Sum_probs=134.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 18 ~~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 45899999999995 5789999999999999999999999999999999999986 5899987653
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhC--CCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +.. .++.+++.... ... . ...+.+++..+++.. +..++++.+|||||+||++
T Consensus 97 ~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~ 173 (267)
T PRK14237 97 YEMRKHIGMVFQRPN--PFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLC 173 (267)
T ss_pred HHHhcceEEEecCCc--ccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHH
Confidence 124899999853 222 36666664321 111 1 234566788888742 3567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 209 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFEL 209 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=291.51 Aligned_cols=163 Identities=27% Similarity=0.343 Sum_probs=137.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 3 PYLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred ceEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 5899999999996 467999999999999999999999999999999999999999999987531 258
Q ss_pred EEeccCcccccccchhHHHHHHHhC----CC-CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF----PG-KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~----~~-~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
+|++|++. +....++.+++.... .. .. ...+..++..+|+. ...++++.+|||||||||+||++|+.+
T Consensus 82 ~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~ 158 (501)
T PRK11288 82 AIIYQELH--LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARN 158 (501)
T ss_pred EEEEechh--ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhC
Confidence 99999853 444556666664311 01 11 23567889999996 456789999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~ 186 (501)
T PRK11288 159 ARVIAFDEPTSSLSAREIEQLFRVIREL 186 (501)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=251.35 Aligned_cols=131 Identities=34% Similarity=0.552 Sum_probs=113.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
++++|++++|+ +.++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 47899999996 457999999999999999999999999999999999999999999987542 3588999
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
|++. +....++.+++. |||||+||++||++++.+|++|||||||++|
T Consensus 80 q~~~--~~~~~tv~~~~~-------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 80 EEPS--LYENLTVRENLK-------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred cCCc--cccCCcHHHHhh-------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 9753 233334443321 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHccc
Q psy208 427 DIETIEALGKAINKY 441 (443)
Q Consensus 427 D~~s~~~l~~~L~~~ 441 (443)
|+.+++.+.+.|.++
T Consensus 127 D~~~~~~l~~~l~~~ 141 (173)
T cd03230 127 DPESRREFWELLREL 141 (173)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999875
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=267.91 Aligned_cols=165 Identities=22% Similarity=0.287 Sum_probs=132.3
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
+.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 21 ~~~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 99 (271)
T PRK14238 21 KKVVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYS 99 (271)
T ss_pred CceEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccccc
Confidence 456899999999996 4679999999999999999999999999999999999987 6999998753
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl 404 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++. ....++++..||||||||+
T Consensus 100 ~~~~~~~i~~v~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv 176 (271)
T PRK14238 100 VEELRTNVGMVFQKPN--PFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRL 176 (271)
T ss_pred HHHHhhhEEEEecCCc--ccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHH
Confidence 124899999863 222 3666665421 1111 1 12234556666431 2346788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||++|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 177 ~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 213 (271)
T PRK14238 177 CIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213 (271)
T ss_pred HHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999765
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=265.70 Aligned_cols=163 Identities=20% Similarity=0.290 Sum_probs=133.0
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~---------- 339 (443)
++|+++|++++|+ .+++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 3 NIISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred ceEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 4799999999996 5689999999999999999999999999999999999997 47999877531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CCC-----CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK-----PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~-----~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... ... ....+..++..+++. ....++++.+|||||+||++|
T Consensus 82 ~~~~~i~~~~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~l 158 (251)
T PRK14251 82 ELRKEVGMVFQQPT--PFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICI 158 (251)
T ss_pred HhhccEEEEecCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHH
Confidence 24899999863 222 46666654211 111 123456778888873 234578899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14251 159 ARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL 193 (251)
T ss_pred HHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999875
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=255.81 Aligned_cols=155 Identities=26% Similarity=0.360 Sum_probs=128.6
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
..|+++|++++|++. .++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 458999999999642 4799999999999999999999999999999999999999999998864 1359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|++|++. +.. .++.+++.. +.......+...++ .++++..|||||+||++|||+++.+|++||||||
T Consensus 85 ~~v~q~~~--~~~-~tv~~~l~~-~~~~~~~~~~~~l~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 152 (207)
T cd03369 85 TIIPQDPT--LFS-GTIRSNLDP-FDEYSDEEIYGALR--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEA 152 (207)
T ss_pred EEEecCCc--ccC-ccHHHHhcc-cCCCCHHHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 99999863 332 366666642 22223344444444 3467899999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 153 ~~~LD~~~~~~l~~~l~~~ 171 (207)
T cd03369 153 TASIDYATDALIQKTIREE 171 (207)
T ss_pred cccCCHHHHHHHHHHHHHh
Confidence 9999999999999999875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=267.27 Aligned_cols=164 Identities=23% Similarity=0.276 Sum_probs=132.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~---------- 339 (443)
++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 9 ~~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 9 TVLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred eEEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 5899999999996 4679999999999999999999999999999999999976 48999987531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC--CC---CCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG---KPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~---~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..++|++|++. +.. .++.+++.... .. ...+.+..++..+++.. ...++++.+|||||+||++|||
T Consensus 88 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lar 164 (264)
T PRK14243 88 EVRRRIGMVFQKPN--PFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIAR 164 (264)
T ss_pred HHhhhEEEEccCCc--ccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHH
Confidence 24899999863 222 36666654211 11 11234455677777632 2457889999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 165 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~ 198 (264)
T PRK14243 165 AIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198 (264)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=261.89 Aligned_cols=164 Identities=30% Similarity=0.445 Sum_probs=141.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
+++++++|+++|+ +-.+++||||+|.+|++++||||||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 3 ~lL~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 3 PLLEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred ceeeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 5799999999996 678999999999999999999999999999999999999999999988642 246
Q ss_pred EEeccCcccccccchhHHHHHHHhC------------CC------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF------------PG------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~------------~~------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
+.-||.+ .+....|+++++.-.. +. ...+++..+|+.+|+. +.++.+.++||+||++||
T Consensus 82 ~RTFQ~~--rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 82 ARTFQIT--RLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eeecccc--cccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHH
Confidence 7778875 4667788888764321 00 1134577899999997 678999999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|||||+.+|++|+||||.+||.+.....+.+.|++.+
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~ 196 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELR 196 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=263.87 Aligned_cols=162 Identities=21% Similarity=0.279 Sum_probs=131.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR------------ 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------------ 338 (443)
.|+++||++.|+ ++++++|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.+.+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 589999999996 46799999999999999999999999999999999999763 699998753
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +.. .++.+++... .... ..+.+.+++..+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 82 LRKRVGMVFQQPN--PFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 125899999863 222 4666655321 1111 1234566777887642 345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 192 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQEL 192 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=297.69 Aligned_cols=162 Identities=30% Similarity=0.476 Sum_probs=132.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.+|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||||+|+|+++|++|+|.+.+...++|++|.+....
T Consensus 2 ~~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~- 79 (635)
T PRK11147 2 SLISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNV- 79 (635)
T ss_pred cEEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCC-
Confidence 3799999999996 57899999999999999999999999999999999999999999999887667889888642110
Q ss_pred cchhHHHH------------------------------HH------HhC---CC-CCHHHHHHHHhcCCCChhhhhccCC
Q psy208 355 MNLRCVQL------------------------------LE------AAF---PG-KPQEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 355 ~~~~~~~~------------------------------~~------~~~---~~-~~~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
..++.+. +. ..+ .. ....++..++..+|+. .+++++
T Consensus 80 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~ 155 (635)
T PRK11147 80 -EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALS 155 (635)
T ss_pred -CCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchh
Confidence 0111110 00 000 01 1234677889999985 278999
Q ss_pred CCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+|||||||||+||++|+.+|+||||||||||||+.++++|.+.|.+|+
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~ 203 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ 203 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=263.20 Aligned_cols=160 Identities=27% Similarity=0.394 Sum_probs=133.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|+++|+++.|+ + ++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 l~~~~l~~~~~-~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q 78 (235)
T cd03299 1 LKVENLSKDWK-E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQ 78 (235)
T ss_pred CeeEeEEEEeC-C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEee
Confidence 46899999996 3 389999999999999999999999999999999999999999998754 235899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ..+.+.+++..+|+. ...++++.+|||||+||++||++++.+|++|||||
T Consensus 79 ~~~--~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDE 155 (235)
T cd03299 79 NYA--LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDE 155 (235)
T ss_pred cCc--cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 852 33445566665421 1111 223466788899985 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|+++
T Consensus 156 Pt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 156 PFSALDVRTKEKLREELKKI 175 (235)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=253.37 Aligned_cols=136 Identities=24% Similarity=0.428 Sum_probs=115.0
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 341 (443)
+++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ...
T Consensus 2 ~~~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 2 EPVLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred CcEEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 4579999999998 89999999999999999999999999999999999999999998754 125
Q ss_pred EEEeccCcc-cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 342 FGYFSQHHV-DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 342 ig~~~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
++|++|++. ..+....++.+++.... .||||||||++||++++.+|++||||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~---------------------------~LS~G~~qrl~la~al~~~p~llllD 129 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS---------------------------LLSGGNQQKVVLARWLARDPRVLILD 129 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh---------------------------hcCHHHHHHHHHHHHHccCCCEEEEC
Confidence 889998742 12333345544442110 09999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|.++
T Consensus 130 EP~~~LD~~~~~~l~~~l~~~ 150 (182)
T cd03215 130 EPTRGVDVGAKAEIYRLIREL 150 (182)
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=264.45 Aligned_cols=164 Identities=23% Similarity=0.302 Sum_probs=131.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcCc---------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHRN--------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~~--------- 339 (443)
+++|+++||+++|+ .+++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 3 KKIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred cceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 46899999999996 5689999999999999999999999999999999999875 5 5899877431
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~ 405 (443)
..++|++|++. +.. .++.+++... .... . ...+...++.+++. .+..++++.+||||||||++
T Consensus 82 ~~~~~~i~~~~q~~~--~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~ 158 (252)
T PRK14255 82 VQLRKQVGMVFQQPN--PFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVC 158 (252)
T ss_pred HHhcCeEEEEECCCc--cCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHH
Confidence 25899999863 222 3666655421 1111 1 22345566777653 23567899999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 194 (252)
T PRK14255 159 IARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194 (252)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=282.12 Aligned_cols=163 Identities=33% Similarity=0.488 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++|+++.|++++++++|+||++++|++++|+|+||||||||+++|+|+.+|++|+|.+++. .+++|
T Consensus 320 ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 320 EISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 4667799999987779999999999999999999999999999999999999999999998742 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh-----hhhccCC----CCCHHHHHHHHHHHHhccCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD-----LALQFVG----SLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-----~~~~~~~----~LSgGekqRl~lA~al~~~p~ 415 (443)
++|+|. + ...|..+++.-..+..+++++.+.++..|+..- -.+..++ .|||||+|||+|||||+.+++
T Consensus 400 v~Q~p~--l-f~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 400 VSQNPY--L-FAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eCCCCc--c-ccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999974 2 245777887665666678888888888776421 1233333 599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++||||||+|||+++.+.+.+.|.+.
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l 502 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQEL 502 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=263.77 Aligned_cols=163 Identities=22% Similarity=0.311 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|+ +|+|.+++
T Consensus 3 ~~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 3 PKIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred ceEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4799999999996 467999999999999999999999999999999999999997 69987642
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+...+..+++. .+..++++.+||||||||++|
T Consensus 82 ~~~~~i~~v~q~~~--~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~l 158 (251)
T PRK14249 82 NLRKRVGMVFQQPN--PFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCI 158 (251)
T ss_pred HhhceEEEEecCCc--cCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 135999999863 222 2666665421 1111 1 23345566667763 234678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 193 (251)
T PRK14249 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193 (251)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=267.85 Aligned_cols=164 Identities=24% Similarity=0.344 Sum_probs=133.8
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
.++|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 19 ~~~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 19 APAMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred CcEEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 46899999999996 57899999999999999999999999999999999999986 699998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHhC---CCCCHH----HHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAAF---PGKPQE----EYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~~~~~~----~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++.... ...... .+..++..+++.. +..++++.+|||||+||++|
T Consensus 98 ~~~~~i~~v~q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~L 174 (276)
T PRK14271 98 EFRRRVGMLFQRPN--PFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCL 174 (276)
T ss_pred HHhhheEEeccCCc--cCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHH
Confidence 125899999863 222 46666654211 111222 2356678888753 23568899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+.+|++|||||||++||+.+++.|.+.|.++
T Consensus 175 Aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 209 (276)
T PRK14271 175 ARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209 (276)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=257.79 Aligned_cols=155 Identities=25% Similarity=0.337 Sum_probs=125.3
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------eEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------LKF 342 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~~i 342 (443)
.+.|+.++|++..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999975678999999999999999999999999999999999999999999987431 358
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..++.+++..... .........+..+++... ..++++..|||||||||+||++++.
T Consensus 82 ~~~~q~~~--~~-~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 157 (218)
T cd03290 82 AYAAQKPW--LL-NATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQ 157 (218)
T ss_pred EEEcCCCc--cc-cccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhh
Confidence 99999863 22 3466776653221 223344555666665321 1246789999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 413 APNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+|++|||||||++||+.+++.+.+
T Consensus 158 ~p~illlDEPt~~LD~~~~~~l~~ 181 (218)
T cd03290 158 NTNIVFLDDPFSALDIHLSDHLMQ 181 (218)
T ss_pred CCCEEEEeCCccccCHHHHHHHHH
Confidence 999999999999999999998887
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=292.92 Aligned_cols=168 Identities=21% Similarity=0.361 Sum_probs=135.6
Q ss_pred CCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc------
Q psy208 274 PPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~------ 339 (443)
.++|+++|++++|++ .+++|+++||+|.+|+++||+||||||||||+|+|+|+++| ++|+|.+.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~ 82 (529)
T PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82 (529)
T ss_pred CceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC
Confidence 358999999999963 25799999999999999999999999999999999999987 7999977431
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQK 401 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGek 401 (443)
..+||++|++...+....++.+++.. ..... ....+.+++..+|+.. ...++++.+||||||
T Consensus 83 ~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~ 162 (529)
T PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGER 162 (529)
T ss_pred HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHH
Confidence 25899999863223333444443321 11111 1245678899999963 245889999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||+||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 163 qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l 202 (529)
T PRK15134 163 QRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202 (529)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=298.33 Aligned_cols=168 Identities=20% Similarity=0.344 Sum_probs=139.0
Q ss_pred CCeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------
Q psy208 274 PPILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------ 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------ 338 (443)
.++|+++|++++|+. ..++|+|+||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 468999999999953 24799999999999999999999999999999999999999999987642
Q ss_pred -------------ceEEEEeccCcccccccchhHHHHHHHh---CCCCC----HHHHHHHHhcCCCCh--hhhhccCCCC
Q psy208 339 -------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGKP----QEEYRRQLGGFGVSG--DLALQFVGSL 396 (443)
Q Consensus 339 -------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~~----~~~~~~~L~~~gl~~--~~~~~~~~~L 396 (443)
...+||++|++...+.+..++.+++... ..... ..++.++|..+|+.. ...++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 1258999998633355556666665421 11111 245678899999953 3578999999
Q ss_pred CHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 397 SgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||||+||+||+.+|+||||||||++||+.+++.+.+.|+++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l 214 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL 214 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998765
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=262.64 Aligned_cols=161 Identities=27% Similarity=0.421 Sum_probs=134.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+ ...++|++|
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 47899999996 46899999999999999999999999999999999999999999998753 135899999
Q ss_pred CcccccccchhHHHHHHHh--CCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++. +....++.+++... .... ....+.++++.+++. ...++++.+||+||+||++||++++.+|+++||||
T Consensus 80 ~~~--~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDE 156 (237)
T TIGR00968 80 HYA--LFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDE 156 (237)
T ss_pred Chh--hccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 863 33344556655321 1111 123567788999986 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 157 P~~~LD~~~~~~~~~~l~~~ 176 (237)
T TIGR00968 157 PFGALDAKVRKELRSWLRKL 176 (237)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999764
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=266.37 Aligned_cols=166 Identities=26% Similarity=0.341 Sum_probs=134.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
.++|.++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+
T Consensus 8 ~~~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 8 EDVFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhheeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 46899999999996 57899999999999999999999999999999999999999997664432
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHhC--CC-CCH----HHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG-KPQ----EEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~-~~~----~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +....++.+++.... .. ... ..+..+++.+++.. +..++++..||+|||||++|
T Consensus 87 ~~~~~i~~~~q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 164 (257)
T PRK14246 87 KLRKEVGMVFQQPN--PFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTI 164 (257)
T ss_pred HHhcceEEEccCCc--cCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHH
Confidence 135899999863 334456666554211 11 111 23567788888852 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 165 aral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~ 200 (257)
T PRK14246 165 ARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK 200 (257)
T ss_pred HHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=270.81 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=138.5
Q ss_pred cCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-
Q psy208 266 FPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN- 339 (443)
Q Consensus 266 ~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~- 339 (443)
+.+++...+++|.++||++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+.
T Consensus 35 ~~~~~~~~~~~l~i~nl~~~~~-~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~ 113 (305)
T PRK14264 35 WTDYEFDGDAKLSVEDLDVYYG-DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQD 113 (305)
T ss_pred ccccccCCCceEEEEEEEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEE
Confidence 3344445567899999999996 4679999999999999999999999999999999999986 68999987531
Q ss_pred ------------eEEEEeccCcccccccchhHHHHHHHhCC--------------CC-----CHHHHHHHHhcCCCCh--
Q psy208 340 ------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP--------------GK-----PQEEYRRQLGGFGVSG-- 386 (443)
Q Consensus 340 ------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~--------------~~-----~~~~~~~~L~~~gl~~-- 386 (443)
..++|++|++. +.. .++.+++..... .. ....+..++..+++..
T Consensus 114 i~~~~~~~~~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 114 IYQDGVNLVELRKRVGMVFQSPN--PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred cccccccHHHHhhceEEEccCCc--ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 25899999863 222 366665542110 00 1234667788887742
Q ss_pred -hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 387 -DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 387 -~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
...++++.+|||||+|||+||+||+.+|+||||||||++||+.++..|.+.|+++.
T Consensus 191 ~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~ 247 (305)
T PRK14264 191 NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELA 247 (305)
T ss_pred hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999998763
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=260.53 Aligned_cols=163 Identities=27% Similarity=0.386 Sum_probs=133.7
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcC--------ceE
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHR--------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--------~~~ 341 (443)
++.++||++.|++. +++|+|+||+|.+|++++|+||||||||||+|+|+|+++ |++|+|.+.+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 57899999999754 589999999999999999999999999999999999999 9999998754 235
Q ss_pred EEEeccCcccccccchhHHHHHHH--h--CCC-CC----HHHHHH-HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--A--FPG-KP----QEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~--~~~-~~----~~~~~~-~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++.. . ... .. ...+.. .+..+++. ...++++..|||||+||++||++++
T Consensus 83 i~~~~q~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~ 159 (226)
T cd03234 83 VAYVRQDDI--LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALT-RIGGNLVKGISGGERRRVSIAVQLL 159 (226)
T ss_pred EEEeCCCCc--cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcch-hhhcccccCcCHHHHHHHHHHHHHH
Confidence 899999853 3344566666542 1 111 11 112334 78888875 4567889999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~~ 189 (226)
T cd03234 160 WDPKVLILDEPTSGLDSFTALNLVSTLSQL 189 (226)
T ss_pred hCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=250.92 Aligned_cols=130 Identities=36% Similarity=0.629 Sum_probs=111.7
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
|+++|++++|++. +++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ ...++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999642 4699999999999999999999999999999999999999999998754 135788
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
++|++. +.. .++.+++ |||||+||++||++++.+|++|||||||+
T Consensus 81 ~~q~~~--~~~-~tv~~~l--------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~ 125 (173)
T cd03246 81 LPQDDE--LFS-GSIAENI--------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNS 125 (173)
T ss_pred ECCCCc--ccc-CcHHHHC--------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 888752 222 2333222 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.++..+.+.|.++
T Consensus 126 ~LD~~~~~~l~~~l~~~ 142 (173)
T cd03246 126 HLDVEGERALNQAIAAL 142 (173)
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 99999999999999765
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=251.23 Aligned_cols=133 Identities=29% Similarity=0.441 Sum_probs=114.1
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEe
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYF 345 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~ 345 (443)
|+++|++++|++. +++|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999643 37999999999999999999999999999999999999999999987642 348899
Q ss_pred ccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
+|++. +. ..++.+++ +..|||||+||++|||+++.+|++|||||||++
T Consensus 81 ~q~~~--~~-~~tv~~~i-----------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~ 128 (178)
T cd03247 81 NQRPY--LF-DTTLRNNL-----------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG 128 (178)
T ss_pred ccCCe--ee-cccHHHhh-----------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 88752 21 12333222 568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 129 LD~~~~~~l~~~l~~~ 144 (178)
T cd03247 129 LDPITERQLLSLIFEV 144 (178)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-32 Score=292.42 Aligned_cols=162 Identities=25% Similarity=0.337 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++||+|.|.+++++|+|+||+|++|+++||+||||||||||+++|+|++ |++|+|.+++. ..++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4999999987755678999999999999999999999999999999999999 99999998752 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. + .+.|+.+++....+..+++++.+.+...++... .......+||||||||++||||++++|
T Consensus 428 v~Q~~~--L-F~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~ 504 (588)
T PRK11174 428 VGQNPQ--L-PHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPC 504 (588)
T ss_pred ecCCCc--C-CCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999973 2 245788888755455677888888777766421 112334579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||.++.+.+.+.|.++
T Consensus 505 ~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 505 QLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=276.50 Aligned_cols=155 Identities=25% Similarity=0.383 Sum_probs=129.9
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEe
Q psy208 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYF 345 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~ 345 (443)
||+++|+ ++. + ++||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+ ...++|+
T Consensus 4 ~l~~~~~-~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLG-DFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEEC-CEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 8999996 444 4 99999999999999999999999999999999999999997743 1248999
Q ss_pred ccCcccccccchhHHHHHHHhCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
+|++. +.+..++.+++...... .....+.+++..+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDE 157 (354)
T TIGR02142 81 FQEAR--LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDE 157 (354)
T ss_pred ecCCc--cCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 99863 44556777776432111 1123477889999996 57889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.+++.+.+.|.++
T Consensus 158 Pts~LD~~~~~~l~~~L~~l 177 (354)
T TIGR02142 158 PLAALDDPRKYEILPYLERL 177 (354)
T ss_pred CCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999998765
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=265.57 Aligned_cols=164 Identities=24% Similarity=0.308 Sum_probs=134.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~---------- 338 (443)
.++|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ |++|+|.+.+
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 45899999999996 4679999999999999999999999999999999999987 4899998743
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHH
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVA 405 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~ 405 (443)
...++|++|++. +... ++.+++... .... . ...+...+..+++.. ...++++.+||||||||++
T Consensus 102 ~~~~~~i~~v~q~~~--l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQRPN--PFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecCCc--cCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 135899999863 2223 666665421 1111 1 233566777888753 3467889999999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~ 214 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL 214 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999875
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=290.79 Aligned_cols=162 Identities=21% Similarity=0.302 Sum_probs=133.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+... ..++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 699999999996 467999999999999999999999999999999999999999999986431 13789
Q ss_pred eccCcccccc-c-----chhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 345 FSQHHVDQLD-M-----NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 345 ~~Q~~~~~l~-~-----~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
++|++...+. . ..++.+++.. .....+.+..++..+|+. +..++++.+|||||||||+||+||+.+|++||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 158 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQD--EVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLI 158 (490)
T ss_pred eccCcchhhcccchhhccccHHHhccc--chhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9997532111 1 2233333311 111234677889999996 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+++.+.+.|.++
T Consensus 159 LDEPt~~LD~~~~~~l~~~l~~~ 181 (490)
T PRK10938 159 LDEPFDGLDVASRQQLAELLASL 181 (490)
T ss_pred EcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999876
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=255.61 Aligned_cols=146 Identities=24% Similarity=0.294 Sum_probs=122.4
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc----------
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN---------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---------- 339 (443)
.+.++||+|.|+. ++++|+++||+|.+|++++|+||||||||||+++|+|+++ |++|+|.+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 5789999999963 4579999999999999999999999999999999999999 89999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
..++|++|++. +....++.+++.... . +. .++++..|||||+||++||++++.+|++|||
T Consensus 83 ~~i~~~~q~~~--~~~~~tv~~~l~~~~------~----~~--------~~~~~~~LS~Ge~qrl~laral~~~p~llll 142 (202)
T cd03233 83 GEIIYVSEEDV--HFPTLTVRETLDFAL------R----CK--------GNEFVRGISGGERKRVSIAEALVSRASVLCW 142 (202)
T ss_pred ceEEEEecccc--cCCCCcHHHHHhhhh------h----hc--------cccchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 25899999752 334456666653210 0 00 4567889999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 143 DEPt~~LD~~~~~~~~~~l~~~ 164 (202)
T cd03233 143 DNSTRGLDSSTALEILKCIRTM 164 (202)
T ss_pred cCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=251.17 Aligned_cols=133 Identities=32% Similarity=0.506 Sum_probs=111.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKFG 343 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ig 343 (443)
|+++|++++|+ ++++++++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 47899999996 467999999999999999999999999999999999999999999987541 2477
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++|++. +....++.+++.. .||||||||++||++++.+|++|||||||
T Consensus 80 ~~~q~~~--~~~~~t~~~~l~~-----------------------------~lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 80 MVFQDFA--LFPHLTVLENIAL-----------------------------GLSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred EEecCCc--cCCCCCHHHheee-----------------------------cCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 8877642 2222333322210 09999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.++..+.+.|.++
T Consensus 129 ~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 129 SALDPITRREVRALLKSL 146 (178)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=259.60 Aligned_cols=167 Identities=29% Similarity=0.436 Sum_probs=135.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ce
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NL 340 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~ 340 (443)
..++|+++||++.|+ ++++|+|+|++|++||+++|+|||||||||||++++|.++|++|.+.+.+ +.
T Consensus 28 ~~~li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 28 NEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CcceEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 346899999999995 68999999999999999999999999999999999999999999876532 23
Q ss_pred EEEEeccCcccccccchhHHHHHHHh-------CC-CCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA-------FP-GKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~-------~~-~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+|||++......+....++.+.+.+. +. ..+ ...+..+|..+|+. ...+++..+||-||||||.||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~-~la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK-HLADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchh-hhccCchhhcCHhHHHHHHHHHH
Confidence 57887754322333333444333221 11 122 23567789999986 58899999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|.+|||||||+|||...++.+.+.|.+.
T Consensus 186 Lv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~ 217 (257)
T COG1119 186 LVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217 (257)
T ss_pred HhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999888764
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=261.77 Aligned_cols=163 Identities=22% Similarity=0.318 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ ++++|+++||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+.
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 2 NKFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred CeEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3689999999996 56899999999999999999999999999999999999986 5999887531
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++... .... . ...+...+..+++.. +..++++.+|||||+|||+||
T Consensus 81 ~~~~i~~~~q~~~--~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 157 (249)
T PRK14253 81 LRIKVGMVFQKPN--PFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIA 157 (249)
T ss_pred HHhheeEEecCCC--cCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHH
Confidence 24899999863 222 4666665421 1111 1 123455677777642 346788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 158 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 191 (249)
T PRK14253 158 RTIAMEPDVILMDEPTSALDPIATHKIEELMEEL 191 (249)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=267.38 Aligned_cols=289 Identities=23% Similarity=0.309 Sum_probs=192.2
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------------HHH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-----------------------------MAI 149 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i 149 (443)
...+++...++.+ +.+++.+.|++.. .++|.+++|||||-| -..
T Consensus 180 ~v~elLk~~de~g------~~devve~l~L~n-vl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 180 KVGELLKKVDERG------KFDEVVERLGLEN-VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred hHHHHHHhhhhcC------cHHHHHHHhcchh-hhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHH
Confidence 4455555555444 7889999999986 479999999999988 122
Q ss_pred HHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 150 IWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDT 229 (443)
Q Consensus 150 ~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 229 (443)
..+.+-|.+-+++||+|+||...||-++|-|..+ .|.- |-|-.+-..+..+. -+..+++-
T Consensus 253 ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~-YG~p----g~YGvvs~p~svr~---------------gIN~yL~G 312 (591)
T COG1245 253 ARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL-YGEP----GVYGVVSKPKSVRV---------------GINEYLKG 312 (591)
T ss_pred HHHHHHHhccCCeEEEEechHHHHHHhhheeEEE-ecCC----ccceEeccchHHHH---------------HHHHHHhc
Confidence 2333334333789999999999999999866555 4432 22222111110000 00011110
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCccccccccccCCCCC-CC-CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEE
Q psy208 230 FRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTEL-LS-PPILQLSEVNFEYVPGKPILTNVCLGATLESRIC 307 (443)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~ 307 (443)
+ +....-.-.+.++.|...++.. .. ..+++..++++.|++ .-|.-=.=+|..||+++
T Consensus 313 y-------------------l~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~~~~k~~g~--F~L~V~~G~i~~gEvig 371 (591)
T COG1245 313 Y-------------------LPEENVRFRPEEIEFEEKPPRDDKARDTLVEYPDLKKTYGD--FKLEVEEGEIYDGEVIG 371 (591)
T ss_pred c-------------------CchhcccccccceeeeccCcccccccceeeecchheeecCc--eEEEecCCeeecceEEE
Confidence 0 0000000001122222222111 12 456777888888852 23333344567889999
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC-C-CHHHHHHHHhcCCCC
Q psy208 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-K-PQEEYRRQLGGFGVS 385 (443)
Q Consensus 308 iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~L~~~gl~ 385 (443)
++||||.||||++|+|+|.++|++|. ..+.+++|-||--. .+.+.++.+.+....+. . +..--.+++..+.+.
T Consensus 372 ilGpNgiGKTTFvk~LAG~ikPdeg~---~~~~~vSyKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~ 446 (591)
T COG1245 372 ILGPNGIGKTTFVKLLAGVIKPDEGS---EEDLKVSYKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE 446 (591)
T ss_pred EECCCCcchHHHHHHHhccccCCCCC---CccceEeecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH
Confidence 99999999999999999999999998 55678999999643 34556666666544332 1 112224566777775
Q ss_pred hhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 386 ~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+..++++..|||||.|||+||.+|..++++++||||+++||.+.+-....+|+++
T Consensus 447 -~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~ 501 (591)
T COG1245 447 -DLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRF 501 (591)
T ss_pred -HHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999999999999999888865
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=289.25 Aligned_cols=163 Identities=23% Similarity=0.298 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~------------~~ 341 (443)
+|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+++|+|+++| ++|+|.+.+. ..
T Consensus 1 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 1 LLEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred CEEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 478999999996 56799999999999999999999999999999999999987 7999987541 35
Q ss_pred EEEeccCcccccccchhHHHHHHHhC--C--C--CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF--P--G--KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~--~--~--~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
+||++|++. +....++.+++.... . . .. ...+..++..+++.....++++.+|||||||||+||++|+
T Consensus 80 i~~v~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~ 157 (500)
T TIGR02633 80 IVIIHQELT--LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALN 157 (500)
T ss_pred EEEEeeccc--cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHh
Confidence 899999863 344556666654211 0 0 11 2346778999998643335789999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 158 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 187 (500)
T TIGR02633 158 KQARLLILDEPSSSLTEKETEILLDIIRDL 187 (500)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998765
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=263.44 Aligned_cols=164 Identities=21% Similarity=0.303 Sum_probs=133.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN---------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~---------- 339 (443)
++|+++|+++.|+ ++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++| ++|+|.+.+.
T Consensus 6 ~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 3699999999996 46799999999999999999999999999999999999985 4899887531
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhC------CCCC-HHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHHHHH
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAF------PGKP-QEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~------~~~~-~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqRl~l 406 (443)
..++|++|++. +.. .++.+++.... +... ...+.+.+..+++. ....++++..|||||+||++|
T Consensus 85 ~~~~~i~~v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 161 (259)
T PRK14260 85 RLRRQIGMVFQRPN--PFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCI 161 (259)
T ss_pred hhhhheEEEecccc--cCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 25899999863 223 56666654211 1111 23456778888874 235678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||++.+|++|||||||++||+.++..+.+.|.++.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 197 (259)
T PRK14260 162 ARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197 (259)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=276.63 Aligned_cols=153 Identities=26% Similarity=0.376 Sum_probs=130.2
Q ss_pred EeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEeccCc
Q psy208 285 EYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYFSQHH 349 (443)
Q Consensus 285 ~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~~Q~~ 349 (443)
.|+ ++.+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ ...++|++|++
T Consensus 2 ~~~-~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 2 KTG-GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred ccC-CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 464 56799999999999999999999999999999999999999999998854 23699999985
Q ss_pred ccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 350 VDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
.+.+..++.+++... ..+.. .+.+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 --~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 81 --ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred --cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 355566777766421 11222 34577889999995 5789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.++..+.+.|.++
T Consensus 158 saLD~~~r~~l~~~l~~l 175 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKL 175 (363)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-32 Score=262.49 Aligned_cols=161 Identities=23% Similarity=0.305 Sum_probs=130.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC-------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~------------- 338 (443)
-+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+.+
T Consensus 6 ~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 47899999996 5689999999999999999999999999999999999986 4799998743
Q ss_pred ceEEEEeccCcccccccchhHHHHHHHh--CCCC------CHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK------PQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~------~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
...++|++|++. +... ++.+++... .... ....+..+++.+++.. ...++++..||||||||++||
T Consensus 85 ~~~i~~v~q~~~--~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 85 RAKVGMVFQKPN--PFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred hhhEEEEecCcc--cccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 124899999863 2222 555555321 1111 1234567788999853 245678999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 195 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999765
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=241.87 Aligned_cols=162 Identities=27% Similarity=0.431 Sum_probs=138.9
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-------------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-------------- 338 (443)
+|+++++++..+.+ -.||++|+|.|.+||.++||||+||||||||-+++|+..|++|+|.+.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 78999999988533 3699999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccCcccccccchhHHHHHHH--hCCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 339 -NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 339 -~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
..++||+||.. .+-++.+.++++.- ...+ .....++.+|..+|+. ..+..+|.+|||||+|||+||||++
T Consensus 86 R~~~vGfVFQSF--~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQSF--HLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEee--eccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhc
Confidence 24699999974 56778888887642 1111 2234578999999996 5778899999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
..|++|+.||||-+||..+-+.+.+.|-.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ 191 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFA 191 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence 99999999999999999999999998754
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=294.12 Aligned_cols=162 Identities=28% Similarity=0.465 Sum_probs=137.7
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++. ..+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 5899999999953 467999999999999999999999999999999999999999999988752 3699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh------h----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA------L----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~------~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+ .+++++.+.++..++..... + ....+||||||||++||||++++
T Consensus 531 ~v~Q~~~--l-f~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 531 VVLQNGR--L-MSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred EEccCCc--c-CcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999974 2 24578888865444 56788888888888753221 1 23457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~ 634 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERL 634 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=289.16 Aligned_cols=162 Identities=24% Similarity=0.347 Sum_probs=132.7
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcC----------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHR---------------- 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~---------------- 338 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|++ +|++|+|.+..
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 568999999999999999999999999999999999997 79999998741
Q ss_pred ----------------------------ceEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCC
Q psy208 339 ----------------------------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGV 384 (443)
Q Consensus 339 ----------------------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl 384 (443)
...++|++|++. .+....++.+++... ..... ...+.+++..+|+
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~-~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl 158 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF-ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQL 158 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEecccc-ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence 124899999732 233334555555321 11111 2456788999999
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
. +..++++.+|||||||||+||+||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 159 ~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 214 (520)
T TIGR03269 159 S-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214 (520)
T ss_pred h-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 6 5678899999999999999999999999999999999999999999999888765
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-32 Score=240.07 Aligned_cols=116 Identities=47% Similarity=0.792 Sum_probs=109.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|+++.|++ .++++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+++...++|++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc---------
Confidence 478999999964 5799999999999999999999999999999999999999999999987777888887
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
||+||+||++|||+++.+|+++||||||++||+.++..+.+
T Consensus 71 ---------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~ 111 (144)
T cd03221 71 ---------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111 (144)
T ss_pred ---------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 112 ~l~~~ 116 (144)
T cd03221 112 ALKEY 116 (144)
T ss_pred HHHHc
Confidence 98764
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.8e-32 Score=260.95 Aligned_cols=164 Identities=24% Similarity=0.305 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--C---CCceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--P---TAGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p---~~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++.+|+|+||+|.+|++++|+||||||||||+++|+|+.+ | ++|+|.+.+
T Consensus 5 ~~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 5799999999995 5689999999999999999999999999999999999975 3 489987743
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... ... .. ...+.+++..+++.. ...++++..||||||||++|
T Consensus 84 ~~~~~i~~~~q~~~--~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14261 84 ALRRKIGMVFQRPN--PFP-KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCI 160 (253)
T ss_pred hhhceEEEEecCCc--cCc-ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHH
Confidence 124899999863 222 3666665421 111 11 224556777777632 34678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||+++.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 161 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~ 196 (253)
T PRK14261 161 ARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK 196 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998753
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=275.81 Aligned_cols=161 Identities=27% Similarity=0.403 Sum_probs=141.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
.|+++||+|+|++++++|+++||+|++|+++||+|+|||||||++|+|.+++. ++|+|.+++ +..|||
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 49999999999877779999999999999999999999999999999999999 999999875 235999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||+.. -.+.|++.++....+..+.+++.+..+++|+.+-. ...+...|||||||||+||||++.+|
T Consensus 430 VPQd~~---LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQDSV---LFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCccc---ccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 999863 23568888888777778888999999999885322 22345589999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+|+++||||++||.++...+.+.+.+
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHH
Confidence 99999999999999999999998865
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.7e-32 Score=258.81 Aligned_cols=160 Identities=25% Similarity=0.290 Sum_probs=128.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
+.++++++.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+.. +.+.... ..+.+.
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~-~~~~~~~--~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV-SSLLGLG--GGFNPE 98 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE-chhhccc--ccCCCC
Confidence 78899999996 5789999999999999999999999999999999999999999999886532 2111111 122334
Q ss_pred hhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHH
Q psy208 357 LRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430 (443)
Q Consensus 357 ~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s 430 (443)
.++.+++... ..... ...+..++..+++. +..++++.+||||||||++|||+++.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 4555555321 11111 22456678888885 56788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
+..+.+.|.++
T Consensus 178 ~~~~~~~l~~~ 188 (224)
T cd03220 178 QEKCQRRLREL 188 (224)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=275.93 Aligned_cols=158 Identities=24% Similarity=0.284 Sum_probs=132.1
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------------e
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------------L 340 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------------~ 340 (443)
.++.+.|+ ...+|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+.+. .
T Consensus 28 ~~~~~~~g-~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~ 106 (382)
T TIGR03415 28 EEILDETG-LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTH 106 (382)
T ss_pred HHHHHhhC-CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcC
Confidence 34556664 567999999999999999999999999999999999999999999988641 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++|++. +.+..++.+++... ..... ...+.++++.+|+. +..++++.+|||||||||+|||+|+.+|
T Consensus 107 ~i~~vfQ~~~--l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 107 RVSMVFQKFA--LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred CEEEEECCCc--CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5999999863 45556777776432 11111 24567889999996 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|.++
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l 210 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLEL 210 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.4e-32 Score=246.11 Aligned_cols=130 Identities=34% Similarity=0.543 Sum_probs=110.5
Q ss_pred EEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|+++.|++. .++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999643 27999999999999999999999999999999999999999999987542 24778
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
++|++. +.. .++.+++ ||||||||++||++++.+|++|||||||+
T Consensus 81 ~~~~~~--~~~-~t~~e~l--------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~ 125 (171)
T cd03228 81 VPQDPF--LFS-GTIRENI--------------------------------LSGGQRQRIAIARALLRDPPILILDEATS 125 (171)
T ss_pred EcCCch--hcc-chHHHHh--------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 887652 211 2322221 99999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHccc
Q psy208 425 HLDIETIEALGKAINKY 441 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~~ 441 (443)
+||+.+++.+.+.|.++
T Consensus 126 gLD~~~~~~l~~~l~~~ 142 (171)
T cd03228 126 ALDPETEALILEALRAL 142 (171)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999765
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=245.12 Aligned_cols=128 Identities=31% Similarity=0.461 Sum_probs=104.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+.+. .+. . ..
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~-~~~---~-----~~-- 68 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGK-EVS---F-----AS-- 68 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE-ECC---c-----CC--
Confidence 47899999996 468999999999999999999999999999999999999999999977542 111 0 00
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.. ...+ ..+++ +.+|||||+||++|||+++.+|++|||||||++||+.+++.+.+
T Consensus 69 --~~------------~~~~---~~i~~--------~~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~ 123 (163)
T cd03216 69 --PR------------DARR---AGIAM--------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK 123 (163)
T ss_pred --HH------------HHHh---cCeEE--------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHH
Confidence 00 0000 01111 11299999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 124 ~l~~~ 128 (163)
T cd03216 124 VIRRL 128 (163)
T ss_pred HHHHH
Confidence 99876
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=294.01 Aligned_cols=163 Identities=26% Similarity=0.379 Sum_probs=137.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-|+++||+|+|++++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++. ..+||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 5899999999975578999999999999999999999999999999999999999999998752 36999
Q ss_pred eccCcccccccchhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. + ...|+.+++... .+..+++++.+.+...++.... .......||||||||++||||++++
T Consensus 553 v~Q~~~--l-f~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 553 LPQEPY--I-FSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred EecCce--e-hhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 999973 2 245888888654 2455677777777777664211 1234467999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||.++.+.+.+.|.++
T Consensus 630 p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 630 SKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=294.33 Aligned_cols=162 Identities=26% Similarity=0.423 Sum_probs=137.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|++ ++++|+|+||+|++|+++||+|+||||||||+|+|+|+++|++|+|.+++ +..+|
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 556 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVA 556 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhee
Confidence 5999999999974 36799999999999999999999999999999999999999999999864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + .+.|+.+++....+..+++++.+.+...++.... ......+||||||||++||||++++
T Consensus 557 ~v~Q~~~--l-f~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 557 MVDQDIF--L-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred EEecCCh--h-hhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 9999973 2 2457888886544455677888888877764321 1123467999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
|++|||||||++||..+...+.+.|.+
T Consensus 634 p~iliLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 634 PSILILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHh
Confidence 999999999999999999999998875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=254.37 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=141.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------eEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------~~ig~~~Q~ 348 (443)
.|++++|+++|+ ++.+++|+||++++|++.|++|+|||||||.+|+|.|++.|++|+|.+.+. .+|||+|.+
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE 80 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE 80 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh
Confidence 589999999995 688999999999999999999999999999999999999999999998752 379999987
Q ss_pred cccccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 349 HVDQLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
. .+.+..++.+.+.. ...+... ..+..+|+++++. ....+++.+||.|++|++.+..+++++|+++|||||
T Consensus 81 R--GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 R--GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred h--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 4 46777787776542 2334433 3567789999986 467789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcccc
Q psy208 423 TNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~~ 442 (443)
++||||.+.+.|.+++.+++
T Consensus 158 FSGLDPVN~elLk~~I~~lk 177 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELK 177 (300)
T ss_pred ccCCChhhHHHHHHHHHHHH
Confidence 99999999999999998764
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-32 Score=260.52 Aligned_cols=154 Identities=26% Similarity=0.349 Sum_probs=124.7
Q ss_pred EEeCCCCceeeeeeEEEe-----CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 284 FEYVPGKPILTNVCLGAT-----LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~-----~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
|+|++....+.+++|++. +|++++|+||||||||||+++|+|+++|++|+|.+.+. .++|++|++.. ....+
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-~i~~~~q~~~~--~~~~t 77 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-TVSYKPQYIKA--DYEGT 77 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-eEEEecccccC--CCCCC
Confidence 345544557777777776 79999999999999999999999999999999988764 79999998632 23446
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 359 CVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+.+++...... .......+++..+++. ...++++.+|||||||||+||++|+.+|++|||||||++||+.++..+.+
T Consensus 78 v~e~l~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~ 156 (246)
T cd03237 78 VRDLLSSITKDFYTHPYFKTEIAKPLQIE-QILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK 156 (246)
T ss_pred HHHHHHHHhhhccccHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 66655422111 1123456788889986 56789999999999999999999999999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|+++
T Consensus 157 ~l~~~ 161 (246)
T cd03237 157 VIRRF 161 (246)
T ss_pred HHHHH
Confidence 98875
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=261.03 Aligned_cols=163 Identities=21% Similarity=0.288 Sum_probs=131.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-----CceEEEcC-----------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-----AGTRTVHR----------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-----~G~i~~~~----------- 338 (443)
++|+++|++++|+ ++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 3799999999996 457999999999999999999999999999999999999985 78876643
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHHh--CCCC-C----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHH
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-P----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~l 406 (443)
...++|++|++. +.. .++.+++... .... . ...+..+++.+++.. ...++++.+|||||+||++|
T Consensus 85 ~~~~~i~~~~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 161 (261)
T PRK14258 85 RLRRQVSMVHPKPN--LFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCI 161 (261)
T ss_pred HhhccEEEEecCCc--cCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHH
Confidence 124899999853 333 4666665421 1111 1 234566788888632 34678899999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 162 aral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l 196 (261)
T PRK14258 162 ARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSL 196 (261)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=284.99 Aligned_cols=163 Identities=27% Similarity=0.379 Sum_probs=139.7
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 359999999999653 57999999999999999999999999999999999999999999998652 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhc----------cCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ----------FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~----------~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. +.++.+++....+..+++++.+.++.+++.. ..++ ....||||||||++|||++++
T Consensus 417 ~~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~-~i~~p~GldT~vge~g~~LSgGqrqRialARall~ 492 (574)
T PRK11160 417 SVVSQRVH--LF-SATLRDNLLLAAPNASDEALIEVLQQVGLEK-LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492 (574)
T ss_pred eEEcccch--hh-cccHHHHhhcCCCccCHHHHHHHHHHcCCHH-HHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999973 22 3577888865545567788888999988853 2222 456799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++.+.+.+.|.++
T Consensus 493 ~~~ililDE~ts~lD~~t~~~i~~~l~~~ 521 (574)
T PRK11160 493 DAPLLLLDEPTEGLDAETERQILELLAEH 521 (574)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-32 Score=257.86 Aligned_cols=150 Identities=21% Similarity=0.331 Sum_probs=122.0
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC----CCceEEEcC---------ceEEEEeccCcccccccchh
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP----TAGTRTVHR---------NLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p----~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~ 358 (443)
+|+|+||+|.+|++++|+||||||||||+|+|+|+++| ++|+|.+.+ ...++|++|++...+....+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 899998754 13699999986322333344
Q ss_pred HHHHHHH---hCCC---CCHHHHHHHHhcCCCCh--hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHH
Q psy208 359 CVQLLEA---AFPG---KPQEEYRRQLGGFGVSG--DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430 (443)
Q Consensus 359 ~~~~~~~---~~~~---~~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s 430 (443)
+.+++.. .... .....+.+++..+++.. ...++++.+|||||||||+||++++.+|++|||||||++||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 4443321 1111 11234778899999863 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
++.+.+.|.++
T Consensus 161 ~~~l~~~l~~~ 171 (230)
T TIGR02770 161 QARVLKLLREL 171 (230)
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.4e-31 Score=285.94 Aligned_cols=162 Identities=24% Similarity=0.327 Sum_probs=136.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++|++|+|++++++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 4899999999975567999999999999999999999999999999999999999999988652 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. +.|+.+++.... ..+++++.+.+...|+.... .......||||||||++||||++.+|
T Consensus 420 v~Q~~~--lF-~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~ 495 (592)
T PRK10790 420 VQQDPV--VL-ADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTP 495 (592)
T ss_pred EccCCc--cc-cchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 999974 22 347788876543 45677888888888764211 11234579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+++.+.+.+.|.++
T Consensus 496 ~illlDEpts~LD~~t~~~i~~~l~~~ 522 (592)
T PRK10790 496 QILILDEATANIDSGTEQAIQQALAAV 522 (592)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=249.75 Aligned_cols=141 Identities=29% Similarity=0.414 Sum_probs=118.3
Q ss_pred CeEEEeeeEEEeCC-----CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcC--------c
Q psy208 275 PILQLSEVNFEYVP-----GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHR--------N 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-----~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~--------~ 339 (443)
+.|+++||+++|++ .+++|+++||+|.+|++++|+||||||||||+++|+|++ +|++|+|.+.+ .
T Consensus 2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~ 81 (194)
T cd03213 2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFR 81 (194)
T ss_pred cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhh
Confidence 35899999999964 267999999999999999999999999999999999999 99999998753 2
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
..++|++|++. +....++.+++... .. ...|||||+||++|||+++.+|++|||
T Consensus 82 ~~i~~~~q~~~--~~~~~t~~~~i~~~-------------~~-----------~~~LS~G~~qrv~laral~~~p~illl 135 (194)
T cd03213 82 KIIGYVPQDDI--LHPTLTVRETLMFA-------------AK-----------LRGLSGGERKRVSIALELVSNPSLLFL 135 (194)
T ss_pred heEEEccCccc--CCCCCcHHHHHHHH-------------HH-----------hccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 35899999853 33344555544210 00 017999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|.++
T Consensus 136 DEP~~~LD~~~~~~l~~~l~~~ 157 (194)
T cd03213 136 DEPTSGLDSSSALQVMSLLRRL 157 (194)
T ss_pred eCCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999875
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-32 Score=284.72 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=133.2
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEEEEec
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKFGYFS 346 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ig~~~ 346 (443)
++|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 478999996 568999999999999999999999999999999999999999999987542 3589999
Q ss_pred cCcccccccchhHHHHHHHhC---CC--CC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF---PG--KP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~---~~--~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++. +....++.+++.... .. .. .+.+.+++..+++. ...++++.+|||||||||+||++|+.+|++|
T Consensus 80 q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~ll 156 (491)
T PRK10982 80 QELN--LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDID-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIV 156 (491)
T ss_pred cccc--cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9863 344556666654211 11 01 23467788999986 4578899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.+++.|.+.|.++
T Consensus 157 lLDEPt~~LD~~~~~~l~~~l~~l 180 (491)
T PRK10982 157 IMDEPTSSLTEKEVNHLFTIIRKL 180 (491)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998765
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=286.67 Aligned_cols=163 Identities=23% Similarity=0.293 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.++++||+|+|+++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 49999999999753 67999999999999999999999999999999999999999999998652 3689
Q ss_pred EeccCcccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. + .+.|+.+++....+. .+++++.+.+...++.... .+. ...+||||||||++||||+++
T Consensus 421 ~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 421 LVSQNVH--L-FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred EEccCce--e-ecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 9999963 2 245778888643232 4677888888877764211 122 235699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++...+.+.|.+.
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~ 526 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=256.20 Aligned_cols=146 Identities=30% Similarity=0.376 Sum_probs=121.6
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCcccccccchhHHHHHHHh
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHHVDQLDMNLRCVQLLEAA 366 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~~~~l~~~~~~~~~~~~~ 366 (443)
|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ...+|++|++. +....++.+++...
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~--l~~~~tv~e~l~~~ 78 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS--LLPWLTVRENIALA 78 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcc--cCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999988642 13589999863 44445666665421
Q ss_pred ----CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 367 ----FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 367 ----~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
..... ...+..++..+++. +..++++..||||||||++||++|+.+|++|||||||++||+.++..+.+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 79 VDRVLPDLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred HHhcccCCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 12222 22467789999996 5678999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.++
T Consensus 158 ~~~ 160 (230)
T TIGR01184 158 MQI 160 (230)
T ss_pred HHH
Confidence 764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=258.86 Aligned_cols=164 Identities=22% Similarity=0.306 Sum_probs=132.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC----------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR---------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~---------- 338 (443)
...|+++|++++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 45799999999996 46899999999999999999999999999999999999875 799988742
Q ss_pred -----ceEEEEeccCcccccccchhHHHHHHHh--CCCC-----CHHHHHHHHhcCCCC---hhhhhccCCCCCHHHHHH
Q psy208 339 -----NLKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGK-----PQEEYRRQLGGFGVS---GDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~-----~~~~~~~~L~~~gl~---~~~~~~~~~~LSgGekqR 403 (443)
...++|++|++. +... ++.+++... .... ..+.+...+..+++. .+..++++..|||||+||
T Consensus 93 ~~~~~~~~i~~~~q~~~--~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 169 (265)
T PRK14252 93 DPIEVRMRISMVFQKPN--PFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQR 169 (265)
T ss_pred CHHHHhccEEEEccCCc--CCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHH
Confidence 124899999863 2233 666665421 1111 123456677777763 234578899999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||+++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 170 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l 207 (265)
T PRK14252 170 LCIARALATDPEILLFDEPTSALDPIATASIEELISDL 207 (265)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=290.35 Aligned_cols=163 Identities=31% Similarity=0.459 Sum_probs=137.9
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|++ .+++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++ +..++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5999999999964 35799999999999999999999999999999999999999999999874 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+..+++++.+.+...++.... ......+||||||||++||||++.+
T Consensus 543 ~v~Q~~~--l-f~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 543 YVPQDPR--L-FYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred EECCChh--h-hhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 9999973 2 2458888887554455778888888877764211 1123457999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 620 p~iliLDE~Ts~LD~~te~~i~~~l~~~ 647 (694)
T TIGR03375 620 PPILLLDEPTSAMDNRSEERFKDRLKRW 647 (694)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-32 Score=241.75 Aligned_cols=159 Identities=28% Similarity=0.446 Sum_probs=134.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|.+++|.++|+ . .-=.++++|..|++++|+||+||||||||++|+|++.|.+|+|++++. .-+++++
T Consensus 1 ~l~L~~V~~~y~-~--~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF 77 (231)
T COG3840 1 MLALDDVRFSYG-H--LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF 77 (231)
T ss_pred CccccceEEeeC-c--ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh
Confidence 467899999995 2 334678999999999999999999999999999999999999998642 2478899
Q ss_pred cCcccccccchhHHHHHHHhC-CC-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAF-PG-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~-~~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ ++....++.+++.-.. |. ...+.+...+.++|+. ...++.|.+|||||||||+|||+|+++-+||+||
T Consensus 78 QEn--NLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD 154 (231)
T COG3840 78 QEN--NLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLA-GFLKRLPGELSGGQRQRVALARCLVREQPILLLD 154 (231)
T ss_pred hcc--ccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChh-hHhhhCccccCchHHHHHHHHHHHhccCCeEEec
Confidence 985 4666777777764321 21 2345678889999996 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc
Q psy208 421 EPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~ 440 (443)
||++.|||.-+..+...+.+
T Consensus 155 EPFsALdP~LR~eMl~Lv~~ 174 (231)
T COG3840 155 EPFSALDPALRAEMLALVSQ 174 (231)
T ss_pred CchhhcCHHHHHHHHHHHHH
Confidence 99999999999999888765
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=256.45 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=131.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcCc-----------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHRN----------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~~----------- 339 (443)
+|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.+.+.
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 589999999996 4679999999999999999999999999999999999864 48999876541
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHhC--CC-CC----HHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAAF--PG-KP----QEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~-~~----~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +.. .++.+++.... .. .. ...+...+..+++.. ...++++..||||||||++||
T Consensus 82 ~~~~i~~~~q~~~--~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 158 (250)
T PRK14266 82 LRKKVGMVFQKPN--PFP-KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCCc--cCc-chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHH
Confidence 24899999863 222 26666654221 11 11 234566788888742 345788999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+++.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 192 (250)
T PRK14266 159 RTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL 192 (250)
T ss_pred HHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999865
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=284.49 Aligned_cols=163 Identities=33% Similarity=0.470 Sum_probs=137.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 59999999999754 47999999999999999999999999999999999999999999988642 2599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. +.++.+++....+..+++++.+.++..++... .......+||||||||++||||++++
T Consensus 400 ~v~Q~~~--lf-~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~ 476 (529)
T TIGR02857 400 WVPQHPF--LF-AGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRD 476 (529)
T ss_pred EEcCCCc--cc-CcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcC
Confidence 9999973 22 45788888654445567778888888776421 11234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 477 ~~ililDE~ts~lD~~~~~~i~~~l~~~ 504 (529)
T TIGR02857 477 APLLLLDEPTAHLDAETEALVTEALRAL 504 (529)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998765
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=250.05 Aligned_cols=136 Identities=29% Similarity=0.390 Sum_probs=112.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------eEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~i 342 (443)
|+++|++++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+ ++|++|+|.+.+. ..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999996 46899999999999999999999999999999999999 5899999987531 238
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+|++|++. +....+..+ .+ ......|||||+||++||++++.+|++||||||
T Consensus 80 ~~v~q~~~--~~~~~~~~~----------------~l----------~~~~~~LS~G~~qrv~laral~~~p~illlDEP 131 (200)
T cd03217 80 FLAFQYPP--EIPGVKNAD----------------FL----------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP 131 (200)
T ss_pred EEeecChh--hccCccHHH----------------HH----------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 88888752 222222211 11 123358999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 132 t~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 132 DSGLDIDALRLVAEVINKL 150 (200)
T ss_pred CccCCHHHHHHHHHHHHHH
Confidence 9999999999999999865
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=257.39 Aligned_cols=164 Identities=20% Similarity=0.223 Sum_probs=134.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcCc---------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHRN--------- 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~~--------- 339 (443)
.+++.++++++.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.+.+.
T Consensus 6 ~~~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 6 PIVMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred CceEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 45799999999995 56899999999999999999999999999999999999986 7999987531
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--C---CCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--F---PGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~---~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA 407 (443)
..++|++|++. +. ..++.+++... . .......+..+++.+++.. ...++++.+|||||+||++||
T Consensus 85 ~~~~~~i~~v~q~~~--~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~la 161 (261)
T PRK14263 85 VVVRRYIGMVFQQPN--PF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIA 161 (261)
T ss_pred HhhhhceEEEecCCc--cc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHH
Confidence 24899999863 22 35666666421 1 1111245677888888743 234578899999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 162 ral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~ 195 (261)
T PRK14263 162 RAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195 (261)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=268.27 Aligned_cols=350 Identities=18% Similarity=0.243 Sum_probs=241.1
Q ss_pred hhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEec------------CCceEEEE
Q psy208 7 NTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIP------------SHISVLHV 51 (443)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~------------~~~~i~~l 51 (443)
=.+.||...|++----+.+++.+.+ +| .||+|+|.+. ....|+.+
T Consensus 9 l~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 3456677777664444444444444 11 1466888763 23568888
Q ss_pred ecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh
Q psy208 52 EQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP 130 (443)
Q Consensus 52 ~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~ 130 (443)
.|++.. +..++.+-++-+..... .+.-++...+..+++++|+.+|++.
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~-------------------------------~~g~id~~~m~~~A~~~l~~lg~~~ 137 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTR-------------------------------RFGLIDRKAMRRRARELLARLGLDI 137 (500)
T ss_pred eechhccCCccHHHHhhccccccc-------------------------------CCCccCHHHHHHHHHHHHHHcCCCC
Confidence 998865 45666655542211000 0111222345678999999999974
Q ss_pred hhhhccCCCCChHHHH-----------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEE
Q psy208 131 EMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 131 ~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
+ .+.++.+||+|||| +.+..+...|++.+.+||+|||..+.+-++||||.
T Consensus 138 ~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Drit 216 (500)
T COG1129 138 D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRIT 216 (500)
T ss_pred C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEE
Confidence 3 68999999999999 45667777788889999999999999999999999
Q ss_pred EEeCCeeEEEcCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q psy208 182 HLHSQRIDTYRGNY-EAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEV 260 (443)
Q Consensus 182 ~l~~g~i~~~~G~y-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 260 (443)
+|.+|+..- .+.. +++... +.++.+-. + .+....+. .
T Consensus 217 VlRDG~~v~-~~~~~~~~~~~-----------------------~lv~~MvG----------r-----~~~~~~~~-~-- 254 (500)
T COG1129 217 VLRDGRVVG-TRPTAAETSED-----------------------ELVRLMVG----------R-----ELEDLFPE-P-- 254 (500)
T ss_pred EEeCCEEee-ecccccCCCHH-----------------------HHHHHhhC----------c-----chhhhccc-c--
Confidence 999999752 2221 222100 00110000 0 00000000 0
Q ss_pred ccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-
Q psy208 261 EVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN- 339 (443)
Q Consensus 261 ~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~- 339 (443)
.....+.++++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.+|+|.+++.
T Consensus 255 -------~~~~~~~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~ 322 (500)
T COG1129 255 -------PEEGIGEPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKP 322 (500)
T ss_pred -------cccCCCCcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEE
Confidence 001234678999999853 1689999999999999999999999999999999999999999998753
Q ss_pred -----------eEEEEeccCcc-cccccchhHHHHHH-----Hh----CCCC--CHHHHHHHHhcCCCChhhhhccCCCC
Q psy208 340 -----------LKFGYFSQHHV-DQLDMNLRCVQLLE-----AA----FPGK--PQEEYRRQLGGFGVSGDLALQFVGSL 396 (443)
Q Consensus 340 -----------~~ig~~~Q~~~-~~l~~~~~~~~~~~-----~~----~~~~--~~~~~~~~L~~~gl~~~~~~~~~~~L 396 (443)
..++|+|.+.. ..+....++.+++. .. +... ....+..+...+.+.....+.++.+|
T Consensus 323 v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~L 402 (500)
T COG1129 323 VRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTL 402 (500)
T ss_pred ccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcC
Confidence 24899997642 22334444444431 11 1111 12345677888888777778999999
Q ss_pred CHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 397 SGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 397 SgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.+|||.|||.|..+|++|||||||.|+|+-++..+.+.|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA 448 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA 448 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=258.87 Aligned_cols=159 Identities=25% Similarity=0.443 Sum_probs=134.2
Q ss_pred EEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++|++++|++ ..++|+|+||+|++|++++|+|+||||||||+++|+|+++ ++|+|.+++. ..++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 789999999953 4579999999999999999999999999999999999997 7899988651 25899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCC-----------CCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-----------LSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~-----------LSgGekqRl~lA~al~~~ 413 (443)
++|++. +.. .++.+++.. +.....+++...+..+|+. ...++.+.. ||||||||++||||++.+
T Consensus 82 v~q~~~--lf~-~tv~~nl~~-~~~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKVF--IFS-GTFRKNLDP-YGKWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCcc--cch-hhHHHHhhh-ccCCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999863 222 477777642 2223566788889999985 456666665 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+...+.+.|.+.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~ 184 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQA 184 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=289.13 Aligned_cols=163 Identities=19% Similarity=0.318 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
..|+++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+.....++|++|++. +.
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~--l~ 527 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPY--MT 527 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCC--CC
Confidence 4699999999996556799999999999999999999999999999999999999999998876678999999873 33
Q ss_pred cchhHHHHHHHhC-------CCCCHHHHHHHHhcCCCChhhhhcc---------CCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 355 MNLRCVQLLEAAF-------PGKPQEEYRRQLGGFGVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 355 ~~~~~~~~~~~~~-------~~~~~~~~~~~L~~~gl~~~~~~~~---------~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
.. ++.+++.... +...++++.++++.+++.. ..+++ ..+||||||||++|||+++.+|++||
T Consensus 528 ~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 528 LG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred Cc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHH-HHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 33 7777765321 2234567788899999853 34443 37999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHccc
Q psy208 419 LDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||++||+.+.+.+.+.++++
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~ 628 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREF 628 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHc
Confidence 99999999999999999998764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=247.48 Aligned_cols=140 Identities=27% Similarity=0.379 Sum_probs=117.3
Q ss_pred eEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc-------eEEE
Q psy208 276 ILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN-------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~-------~~ig 343 (443)
.|+++|+++.|++ ++++|+++||+|.+|++++|+||||||||||+++|+|+. +|++|+|.+.+. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 6899999999964 257999999999999999999999999999999999986 489999987642 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++|++. +....++.+++.... .+ ..|||||+||++||++++.+|++|||||||
T Consensus 83 ~~~q~~~--~~~~~tv~~~l~~~~----------~~--------------~~LSgGe~qrv~la~al~~~p~vlllDEP~ 136 (192)
T cd03232 83 YVEQQDV--HSPNLTVREALRFSA----------LL--------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT 136 (192)
T ss_pred EecccCc--cccCCcHHHHHHHHH----------HH--------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence 9999752 333445555553110 00 089999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 137 ~~LD~~~~~~l~~~l~~~ 154 (192)
T cd03232 137 SGLDSQAAYNIVRFLKKL 154 (192)
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-32 Score=241.95 Aligned_cols=162 Identities=30% Similarity=0.408 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++++.+.- ++.++|+++||++++||+++|+||+|||||||+|+++-+++|++|++.+.+. ..++|
T Consensus 3 lle~kq~~y~a-~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 3 LLELKQVGYLA-GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred chHHHHHHhhc-CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 35667776654 3578999999999999999999999999999999999999999999988642 35788
Q ss_pred eccCcccccccchhHHHHHHH----hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA----AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
+.|.+. +. ..++.+++.- .....+...+..+|++|++....+.+++.+||||||||++|+|-|..-|+||+||
T Consensus 82 ~~Q~pa--Lf-g~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPA--LF-GDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcc--cc-ccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 988863 22 2355555421 1122356678899999999988999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+.||+.+.+.+++.|-.|
T Consensus 159 E~TsALD~~nkr~ie~mi~~~ 179 (223)
T COG4619 159 EITSALDESNKRNIEEMIHRY 179 (223)
T ss_pred CchhhcChhhHHHHHHHHHHH
Confidence 999999999999999998776
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=258.92 Aligned_cols=166 Identities=21% Similarity=0.345 Sum_probs=141.3
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-C----CCceEEEcCc--------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-P----TAGTRTVHRN-------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p----~~G~i~~~~~-------- 339 (443)
+|+++||+.+|... ..+++||||+|.+||++||||.+||||||+.+.|+|+++ | .+|+|.+.+.
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 47899999999643 369999999999999999999999999999999999998 3 5688877532
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHhCC---CC-----CHHHHHHHHhcCCCChh--hhhccCCCCCHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK-----PQEEYRRQLGGFGVSGD--LALQFVGSLSGGQKS 402 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~-----~~~~~~~~L~~~gl~~~--~~~~~~~~LSgGekq 402 (443)
..|+|+||++...+++..++-..+..... .. ..+.+.++|+.+|+... ..+.+|++|||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ 160 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ 160 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence 36999999998888888877665543211 11 13467889999999865 678999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||.||.|++.+|++||.||||++||...+.++.+.|++.
T Consensus 161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l 199 (316)
T COG0444 161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL 199 (316)
T ss_pred HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999865
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-31 Score=283.37 Aligned_cols=163 Identities=26% Similarity=0.347 Sum_probs=137.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-|+++||+|+|++ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ ..+++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 4999999999964 35799999999999999999999999999999999999999999999875 23599
Q ss_pred EeccCcccccccchhHHHHHHHhCC-CCCHHHHHHHHhcCCCChhh------hhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFP-GKPQEEYRRQLGGFGVSGDL------ALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~gl~~~~------~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. + .+.+..+++....+ ..+++++.+.+..+|+.... .+. ....||||||||++|||+++.
T Consensus 410 ~v~Q~~~--l-f~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 410 LVSQDVV--L-FNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred EEccCcc--c-ccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 9999973 2 24577788764433 45677888888888774221 122 234699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||..+.+.+.+.|.++
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~ 515 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERL 515 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998775
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=286.45 Aligned_cols=163 Identities=25% Similarity=0.385 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++||+|+|++++++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975467999999999999999999999999999999999999999999988652 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. .+ ..|..+++....+..+++++...+...++... ........||||||||++|||+++++|
T Consensus 414 v~Q~~~-lf--~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 414 VFQDAG-LF--NRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EecCcc-cc--cccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999973 22 45778887654345567777777777665321 112234579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+.+.+.+.|.+.
T Consensus 491 ~iliLDEpts~LD~~t~~~i~~~l~~~ 517 (588)
T PRK13657 491 PILILDEATSALDVETEAKVKAALDEL 517 (588)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=281.91 Aligned_cols=164 Identities=24% Similarity=0.369 Sum_probs=135.9
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 358999999999642 57999999999999999999999999999999999999999999988651 35
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|+||++. -.+.|..+++....+..+++++...+...++... ........||||||||++||||++
T Consensus 416 i~~~~Q~~~---lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~ 492 (576)
T TIGR02204 416 MALVPQDPV---LFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAIL 492 (576)
T ss_pred ceEEccCCc---cccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 999999873 2345777887654444566777777777776321 111234579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|++|||||||++||+.+.+.+.+.|.++
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~ 522 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETL 522 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999888764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=279.80 Aligned_cols=163 Identities=25% Similarity=0.403 Sum_probs=135.0
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
-.|+++||+|+|+.. .++|+|+||+|+||+++|||||||+||||+.++|..++.|++|+|.+++ +.+
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 369999999999753 3699999999999999999999999999999999999999999998864 246
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCC-------CCh---hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFG-------VSG---DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-------l~~---~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
||++.|+|.. ...++.+++.......+++++.+..+.-+ |+. .....+..+||||||||++|||||+
T Consensus 544 Ig~V~QEPvL---Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALl 620 (716)
T KOG0058|consen 544 IGLVGQEPVL---FSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALL 620 (716)
T ss_pred eeeeecccee---ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHh
Confidence 9999999852 35678888876666666666655443322 111 1223455689999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|.||||||.|++||.++...+.++|.+
T Consensus 621 r~P~VLILDEATSALDaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 621 RNPRVLILDEATSALDAESEYLVQEALDR 649 (716)
T ss_pred cCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence 99999999999999999999999999864
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=286.47 Aligned_cols=159 Identities=25% Similarity=0.389 Sum_probs=133.3
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
..|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 556 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQ 556 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhh
Confidence 35999999999974 357999999999999999999999999999999999999999999998752 36
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. + ...|+.+++....+..+++++.+.++..++.... .+ ....+||||||||++||||++
T Consensus 557 i~~v~Q~~~--l-F~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl 633 (711)
T TIGR00958 557 VALVGQEPV--L-FSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALV 633 (711)
T ss_pred ceEEecCcc--c-cccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHh
Confidence 999999974 2 2457888886544555677788888877764211 12 234579999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++|++|||||||++||+++.+.+.+
T Consensus 634 ~~p~ILILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 634 RKPRVLILDEATSALDAECEQLLQE 658 (711)
T ss_pred cCCCEEEEEccccccCHHHHHHHHH
Confidence 9999999999999999999999887
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=261.50 Aligned_cols=165 Identities=21% Similarity=0.313 Sum_probs=133.3
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-----CCCceEEEcC---------
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-----PTAGTRTVHR--------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-----p~~G~i~~~~--------- 338 (443)
..+|+++|++++|.+ .+++|+|+||+|.+|+++||+|+||||||||+++|+|+.+ |++|+|.+.+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 458999999999953 3579999999999999999999999999999999999986 5799987632
Q ss_pred ----ceEEEEeccCcccccccchhHHHHHHH--hCCCCCH-----HHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHH
Q psy208 339 ----NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGKPQ-----EEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~~-----~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl 404 (443)
+..++|+||++. .+ ..++.+++.. .+..... ..+...+..+++.. ...++++.+|||||||||
T Consensus 158 ~~~lr~~i~~v~q~~~-~~--~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 158 SLELRTRIGMVFQKPT-PF--EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred hHhhhccEEEEecCCc-cC--CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 235999999874 22 3566676642 1111221 12466777777632 345788999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||||++.+|+||||||||++||+.+...+.+.|.++
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l 271 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL 271 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998765
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=278.74 Aligned_cols=164 Identities=29% Similarity=0.403 Sum_probs=133.0
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
..++++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 359999999999643 5799999999999999999999999999999999999999999998864 1359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..+..+++....+..+++++.+.++..++.. ........+||||||||++||||++.
T Consensus 395 ~~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 395 GYLPQDVE--LF-PGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred EEecCCcc--cc-cccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999863 22 2477777753223345555555555444321 12334567899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+.+.+.+.|.++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~ 500 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKAL 500 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=278.84 Aligned_cols=163 Identities=26% Similarity=0.362 Sum_probs=134.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.++++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5999999999975567999999999999999999999999999999999999999999988642 35899
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. .+ ..++.+++....+..+++++...+...++.. .........||||||||++|||||+.+|
T Consensus 414 v~q~~~-lf--~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p 490 (585)
T TIGR01192 414 VFQDAG-LF--NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNA 490 (585)
T ss_pred EccCCc-cC--cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999963 22 3577888765434445566655555444321 1234556789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+.+.+.+.|.++
T Consensus 491 ~ililDEpts~LD~~~~~~i~~~l~~~ 517 (585)
T TIGR01192 491 PILVLDEATSALDVETEARVKNAIDAL 517 (585)
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=253.39 Aligned_cols=164 Identities=18% Similarity=0.224 Sum_probs=126.9
Q ss_pred CCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceE
Q psy208 274 PPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ 341 (443)
...|+++|++++|++. +.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ ...
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 3579999999999642 4799999999999999999999999999999999999999999998753 235
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +.. .++.+++.... ......+...+..+++.. ...+.++..||+||+||++|||+++
T Consensus 97 i~~v~q~~~--l~~-~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 97 LSIILQDPI--LFS-GSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred EEEECCCCc--ccc-cHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 899999863 222 35554442111 111222333333333311 2234567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 202 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTA 202 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-31 Score=239.77 Aligned_cols=162 Identities=29% Similarity=0.462 Sum_probs=137.1
Q ss_pred CeEEEeeeEEEeCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEec
Q psy208 275 PILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~--il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~ 346 (443)
.++.+++++.+|+ +++ +|+|+|++|.+||.++++||+||||||||++++|+.+|+.|+|.++.+ ..-|.++
T Consensus 2 ~~l~~~~~sl~y~-g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVF 80 (259)
T COG4525 2 CMLNVSHLSLSYE-GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVF 80 (259)
T ss_pred ceeehhheEEecC-CcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEe
Confidence 3578899999996 455 999999999999999999999999999999999999999999988653 3468899
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++... ..+.. ...+.+.|..+|+. +..++++.+||||||||+.|||||+.+|++|+||
T Consensus 81 Q~~--~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD 157 (259)
T COG4525 81 QNE--ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD 157 (259)
T ss_pred ccC--ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcc-cccccceEeecchHHHHHHHHHHhhcCcceEeec
Confidence 985 456667777776432 22222 23467788999996 4568999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcc
Q psy208 421 EPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~ 440 (443)
||+..||.-+++.+.+.|.+
T Consensus 158 EPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 158 EPFGALDALTREQMQELLLD 177 (259)
T ss_pred CchhhHHHHHHHHHHHHHHH
Confidence 99999999999999988754
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=268.87 Aligned_cols=162 Identities=28% Similarity=0.374 Sum_probs=138.7
Q ss_pred eEEEeeeEEEeCCCC-ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~-~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.++++||+|+|++.. ++|+|+||++.+||++||+|++|||||||+.+|+|.++|++|+|..++. ..++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 799999999998654 7999999999999999999999999999999999999999999988641 2477
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
+++|.+. + ...|..+++.-..++.+++++.+.+..+|+.+-.. ..-...|||||+||++|||+|+++
T Consensus 416 vl~Qr~h--l-F~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~d 492 (573)
T COG4987 416 VLTQRVH--L-FSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHD 492 (573)
T ss_pred hhccchH--H-HHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcC
Confidence 7888752 2 24577888877777788999999999999853222 223458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+++||||||.|||+.+.+.+.+.|.+
T Consensus 493 apl~lLDEPTegLD~~TE~~vL~ll~~ 519 (573)
T COG4987 493 APLWLLDEPTEGLDPITERQVLALLFE 519 (573)
T ss_pred CCeEEecCCcccCChhhHHHHHHHHHH
Confidence 999999999999999999999988754
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=255.23 Aligned_cols=147 Identities=24% Similarity=0.267 Sum_probs=118.9
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHH--hC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA--AF 367 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~ 367 (443)
+++|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.+.+. +++++|.. .+....++.+++.. ..
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~--~~~~~~~~--~~~~~~tv~enl~~~~~~ 112 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE--VSVIAISA--GLSGQLTGIENIEFKMLC 112 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE--EeEEeccc--CCCCCCcHHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999988763 55666653 23334456665532 11
Q ss_pred CCCCHH----HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 PGKPQE----EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ~~~~~~----~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...... .+..++..+++. +..++++.+|||||+||++||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~ 189 (264)
T PRK13546 113 MGFKRKEIKAMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF 189 (264)
T ss_pred cCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 122222 234566777875 5678899999999999999999999999999999999999999999999998765
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=239.38 Aligned_cols=163 Identities=29% Similarity=0.446 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
+.|+++|+.++|+ ...+|++|||+-..||+|.|||.+||||||+||||.=+..|+.|.|.+++.
T Consensus 5 ~~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 4589999999995 578999999999999999999999999999999999999999999987531
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHHhCC---CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
.+.|+++|+. ++....|+++++..... +. ..+.+..+|.++|+. +..+.+|..|||||+||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~F--NLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR 160 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHF--NLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQR 160 (256)
T ss_pred CHHHHHHHHHHhhHhhhhc--chhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHH
Confidence 2478889874 46667788887754211 11 234677899999996 56779999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||+.+|.++++||||++|||+-.-.+...+.+.
T Consensus 161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~L 198 (256)
T COG4598 161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDL 198 (256)
T ss_pred HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998888877654
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=253.92 Aligned_cols=157 Identities=24% Similarity=0.337 Sum_probs=123.2
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
+.+.|+++|+++. ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+ .++|++|++.
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g--~i~yv~q~~~-- 108 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG--RISFSSQFSW-- 108 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--EEEEEeCccc--
Confidence 4567999999985 25699999999999999999999999999999999999999999998865 5999999863
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
+.. .++.+++..... .....+...+..+++... ...+++..||||||||++||++++.+|++||||||
T Consensus 109 l~~-~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEP 186 (282)
T cd03291 109 IMP-GTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSP 186 (282)
T ss_pred ccc-cCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 222 366666542211 122233344444444211 12344679999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy208 423 TNHLDIETIEALGKAI 438 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L 438 (443)
|++||+.+++.+.+.+
T Consensus 187 t~gLD~~~~~~l~~~l 202 (282)
T cd03291 187 FGYLDVFTEKEIFESC 202 (282)
T ss_pred CccCCHHHHHHHHHHH
Confidence 9999999999888753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=269.89 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=130.5
Q ss_pred CCeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccc
Q psy208 274 PPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVD 351 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~ 351 (443)
.++++++||++.|+++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+.+... ++.+..
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--~i~~~~-- 94 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--LIAISS-- 94 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--eEEecc--
Confidence 4689999999999753 4699999999999999999999999999999999999999999999876431 222221
Q ss_pred ccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 352 QLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 352 ~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.+....++.+++.. .+..... +.+..++..+++. +..++++.+||||||||++|||||+.+|++|||||||+|
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~-~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg 173 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIG-KFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV 173 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 12233455555432 1112222 2345678888885 567899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.++..+.+.|.++
T Consensus 174 LD~~sr~~LlelL~el 189 (549)
T PRK13545 174 GDQTFTKKCLDKMNEF 189 (549)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998765
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=240.30 Aligned_cols=163 Identities=27% Similarity=0.427 Sum_probs=130.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
||+++|++++.. ++.+++++||++.+||+++|+||||||||||||.|+|.+.|++|++.+++. ..-+.
T Consensus 1 mi~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 1 MIRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred CeeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 588999999985 578999999999999999999999999999999999999999999988642 23577
Q ss_pred eccCcccccccchhHHHHHHH-hCCC----C-CHHH--HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-AFPG----K-PQEE--YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA---- 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~~~~----~-~~~~--~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~---- 412 (443)
++|+....+.. ++.+.+.. ..+. . .+.. +...|+..++. ....+...+|||||||||.|||+|++
T Consensus 80 lpQ~s~laFpF--tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~ 156 (259)
T COG4559 80 LPQNSSLAFPF--TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPP 156 (259)
T ss_pred cccCcccccce--EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh-hhhccchhhcCchHHHHHHHHHHHHHccCC
Confidence 88886444443 33333321 1111 1 1222 67788888876 46678888999999999999999976
Q ss_pred --CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 413 --APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 413 --~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++.+|+|||||+.||+..+..+.+..++|.
T Consensus 157 v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la 188 (259)
T COG4559 157 VPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188 (259)
T ss_pred CCCCceEEecCCccccchHHHHHHHHHHHHHH
Confidence 345999999999999999999999887763
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=275.99 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=127.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5999999999975567999999999999999999999999999999999999999999988642 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc-----CCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~-----~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
++|++. .++ .+..++ .+..+++.+.+.++.+++... ...+ ..+||||||||++||||++.+|++|||
T Consensus 402 v~q~~~-lf~--~ti~~n----~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ilil 473 (547)
T PRK10522 402 VFTDFH-LFD--QLLGPE----GKPANPALVEKWLERLKMAHK-LELEDGRISNLKLSKGQKKRLALLLALAEERDILLL 473 (547)
T ss_pred EecChh-HHH--Hhhccc----cCchHHHHHHHHHHHcCCchh-hhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999863 222 222222 122345567778888887532 2111 358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHc
Q psy208 420 DEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~ 439 (443)
||||++||+++.+.+.+.|.
T Consensus 474 DE~ts~LD~~~~~~i~~~l~ 493 (547)
T PRK10522 474 DEWAADQDPHFRREFYQVLL 493 (547)
T ss_pred ECCCCCCCHHHHHHHHHHHH
Confidence 99999999999999888775
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=283.26 Aligned_cols=163 Identities=28% Similarity=0.410 Sum_probs=136.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|++++|+|+||||||||+|+|+|+++|++|+|.+++. ..++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 59999999999643 57999999999999999999999999999999999999999999998652 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+..+++++.+.+...++... .......+||||||||++||||++++
T Consensus 535 ~v~q~~~--l-f~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 535 VVLQENV--L-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred EEccCCe--e-hhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999863 2 245778888654455567777777777665321 12234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 612 ~~ililDEpts~LD~~~~~~i~~~l~~~ 639 (694)
T TIGR01846 612 PRILIFDEATSALDYESEALIMRNMREI 639 (694)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=280.51 Aligned_cols=162 Identities=30% Similarity=0.452 Sum_probs=136.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
-|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..++|
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~ 407 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407 (567)
T ss_pred eEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccE
Confidence 399999999997567899999999999999999999999999999999999999999999853 236999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh------hhhhcc----CCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG------DLALQF----VGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~------~~~~~~----~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. +. ..|+.+++....++.+++++.+.+...+... +-.+.. ...||||||||++||||++.+|
T Consensus 408 V~Qd~~--LF-~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~ 484 (567)
T COG1132 408 VSQDPL--LF-SGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNP 484 (567)
T ss_pred Ecccce--ee-cccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 999873 22 3688888876666567777777666554321 112333 4589999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|||||||++||.++...+.+.+.+
T Consensus 485 ~ILILDEaTSalD~~tE~~I~~~l~~ 510 (567)
T COG1132 485 PILILDEATSALDTETEALIQDALKK 510 (567)
T ss_pred CEEEEeccccccCHHhHHHHHHHHHH
Confidence 99999999999999999999999863
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-30 Score=275.71 Aligned_cols=163 Identities=25% Similarity=0.294 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.|+++|++|+|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 48999999999643 57999999999999999999999999999999999999999999988642 3589
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. ..|+.+++....+..+++++...+...++... ........||||||||++||||++.+
T Consensus 393 ~v~q~~~--lf-~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~ 469 (569)
T PRK10789 393 VVSQTPF--LF-SDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469 (569)
T ss_pred EEccCCe--ec-cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcC
Confidence 9999863 22 34777887644344566677777776665321 11234568999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+.+.+.+.|.++
T Consensus 470 ~~illlDEpts~LD~~~~~~i~~~l~~~ 497 (569)
T PRK10789 470 AEILILDDALSAVDGRTEHQILHNLRQW 497 (569)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=268.82 Aligned_cols=167 Identities=22% Similarity=0.386 Sum_probs=142.2
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC----CceEEEcCc--------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT----AGTRTVHRN-------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~~-------- 339 (443)
++|+++||++.|... ..+++||||+|.+||++||+|.+||||||+.+.|.|++++. +|+|.+++.
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999999632 25999999999999999999999999999999999999987 799977542
Q ss_pred -------eEEEEeccCcccccccchhHHHHHHHhC---C----CCCHHHHHHHHhcCCCChhhh-hccCCCCCHHHHHHH
Q psy208 340 -------LKFGYFSQHHVDQLDMNLRCVQLLEAAF---P----GKPQEEYRRQLGGFGVSGDLA-LQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 -------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~----~~~~~~~~~~L~~~gl~~~~~-~~~~~~LSgGekqRl 404 (443)
..|+|+||++...+++..++...+...+ . .....++.++|..+|++.... +++|++|||||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv 163 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV 163 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence 4699999999888888777666554321 1 112456778999999976544 369999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.||+||+.+|++||+||||.+||+.++..+.++|++.
T Consensus 164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l 200 (539)
T COG1123 164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL 200 (539)
T ss_pred HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=249.49 Aligned_cols=146 Identities=24% Similarity=0.442 Sum_probs=126.9
Q ss_pred CeEEEeeeEEEeCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEec
Q psy208 275 PILQLSEVNFEYVPG--------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFS 346 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~ 346 (443)
++++++|+++.|+-+ ..+++||||+|.+||++||||.||||||||-|+|+|+++|++|+|.+.+..-
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i----- 77 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDI----- 77 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcch-----
Confidence 579999999999632 2689999999999999999999999999999999999999999998765320
Q ss_pred cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~L 426 (443)
..+. .....+.+.++|..+|+..+..++++++|||||+||++|||||+.+|+++++||||+.|
T Consensus 78 ----~~~~-------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaL 140 (268)
T COG4608 78 ----TKLS-------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSAL 140 (268)
T ss_pred ----hhcc-------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhc
Confidence 0011 11124568899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHcccc
Q psy208 427 DIETIEALGKAINKYT 442 (443)
Q Consensus 427 D~~s~~~l~~~L~~~~ 442 (443)
|...+.++.++|.+++
T Consensus 141 DvSiqaqIlnLL~dlq 156 (268)
T COG4608 141 DVSVQAQILNLLKDLQ 156 (268)
T ss_pred chhHHHHHHHHHHHHH
Confidence 9999999999998754
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=250.04 Aligned_cols=155 Identities=28% Similarity=0.412 Sum_probs=126.2
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEec
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYFS 346 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~~ 346 (443)
+++||++. .+|+|+||+|.+|++++|+|+||||||||+++|+|+++ .+|+|.+.+. ..++|++
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 57788874 27999999999999999999999999999999999986 4999987542 2489999
Q ss_pred cCcccccccchhHHHHHHHhCC-CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc-------CC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP-GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA-------AP 414 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~-------~p 414 (443)
|++. +....++.+++..... ... ...+.++++.+++. +..++++..||||||||++||++++. +|
T Consensus 76 q~~~--~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p 152 (248)
T PRK03695 76 QQQT--PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLD-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAG 152 (248)
T ss_pred ccCc--cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCC
Confidence 9853 2334466666543211 111 23567889999985 56788999999999999999999997 67
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|.++
T Consensus 153 ~llllDEPt~~LD~~~~~~l~~~L~~~ 179 (248)
T PRK03695 153 QLLLLDEPMNSLDVAQQAALDRLLSEL 179 (248)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999875
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=237.71 Aligned_cols=114 Identities=32% Similarity=0.376 Sum_probs=103.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhH
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC 359 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~ 359 (443)
.||+++|+ +++++.++ |+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ ..++|++|+..
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~i~~~~q~~~--------- 71 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-ITPVYKPQYID--------- 71 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC-EEEEEEcccCC---------
Confidence 58999996 56788884 99999999999999999999999999999999999999865 35888887531
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
||||||||++|||+++.+|+++||||||++||+.+++.+.+.|.
T Consensus 72 ------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 72 ------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIR 115 (177)
T ss_pred ------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
++
T Consensus 116 ~~ 117 (177)
T cd03222 116 RL 117 (177)
T ss_pred HH
Confidence 64
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=245.37 Aligned_cols=143 Identities=36% Similarity=0.516 Sum_probs=117.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEeccCcccccccchhHHHHHHHh-----
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQHHVDQLDMNLRCVQLLEAA----- 366 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----- 366 (443)
|+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++........++.+++...
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 578999999999999999999999999999999999998753 359999998643222334555555321
Q ss_pred --CCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 367 --FPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 367 --~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.. .....+..+++.+++. +..++++.+||||||||++||++++.+|++|||||||++||+.+++.+.+.|.++
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 101 1123567889999986 5678899999999999999999999999999999999999999999999999865
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=231.33 Aligned_cols=161 Identities=29% Similarity=0.457 Sum_probs=133.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-E---------EEEe
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-K---------FGYF 345 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-~---------ig~~ 345 (443)
+++.+|++...+ ..++|.++||++.+||.+-|.||||||||||||+|+|+.+|++|+|.+.+.. . +-|+
T Consensus 2 ~L~a~~L~~~R~-e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yL 80 (209)
T COG4133 2 MLEAENLSCERG-ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYL 80 (209)
T ss_pred cchhhhhhhccC-cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHh
Confidence 478899998874 6789999999999999999999999999999999999999999999986321 1 1111
Q ss_pred ccCcccccccchhHHHHHHH--hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 346 SQHHVDQLDMNLRCVQLLEA--AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
- +...+....|+.+++.- .+.+ .+...+.+.+..+|+. ...+.|+.+||.|||+||+|||..++.++++|||||
T Consensus 81 G--H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP 157 (209)
T COG4133 81 G--HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEP 157 (209)
T ss_pred h--ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCc
Confidence 1 11234566788887642 2222 3456788999999997 578899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcc
Q psy208 423 TNHLDIETIEALGKAINK 440 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~ 440 (443)
|++||...+..|...+..
T Consensus 158 ~taLDk~g~a~l~~l~~~ 175 (209)
T COG4133 158 FTALDKEGVALLTALMAA 175 (209)
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 999999999999887754
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=263.58 Aligned_cols=165 Identities=29% Similarity=0.404 Sum_probs=142.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++++++|++|+|+ +.++|+++||+|.+||++||+|.||||||||+|+|+|.++|++|+|.+++. ..
T Consensus 6 ~~ll~~~~i~K~Fg-gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 6 PPLLELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred cceeeeecceEEcC-CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 46899999999996 578999999999999999999999999999999999999999999998742 34
Q ss_pred EEEeccCcccccccchhHHHHHHH-hCCC-----C----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA-AFPG-----K----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~-~~~~-----~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
|+.++|+. .+.++.++.+++.- ..+. . ....+..+|..+|+..+ .+.++++||.||||.|.||||+.
T Consensus 85 I~~V~QEl--~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~ 161 (500)
T COG1129 85 IATVHQEL--SLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEIARALS 161 (500)
T ss_pred cEEEeech--hccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHh
Confidence 88899986 47778888888742 1111 1 13457788999998633 78999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.+++||||||||+.|+....+.|.+.+++++
T Consensus 162 ~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk 192 (500)
T COG1129 162 FDARVLILDEPTAALTVKETERLFDLIRRLK 192 (500)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=296.84 Aligned_cols=166 Identities=26% Similarity=0.381 Sum_probs=141.4
Q ss_pred CCeEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEE
Q psy208 274 PPILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~i 342 (443)
.+.|+++||++.|+ +++++++|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+.+. ..+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 46899999999995 3468999999999999999999999999999999999999999999988642 358
Q ss_pred EEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++. +....++.+++.. ...+.. .+++.+++..+|+. +..++++++|||||||||+||+||+.+|++
T Consensus 1006 G~~pQ~~~--L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkV 1082 (2272)
T TIGR01257 1006 GMCPQHNI--LFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKV 1082 (2272)
T ss_pred EEEecCCc--CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999853 4455677776642 112221 34577889999996 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||+|||+.+++.+.+.|++++
T Consensus 1083 LLLDEPTSGLDp~sr~~l~~lL~~l~ 1108 (2272)
T TIGR01257 1083 VVLDEPTSGVDPYSRRSIWDLLLKYR 1108 (2272)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998763
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=248.27 Aligned_cols=157 Identities=22% Similarity=0.292 Sum_probs=123.2
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC----------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR---------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 338 (443)
.+|+++|++.+.+++|+|+ +.+|++++|+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999644469999995 999999999999999999999999999999999995 211
Q ss_pred ---ceEEEEeccCcccccccchhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 339 ---NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
...++|++|... ... . +....+...... .....+.+++..+|+. +..++++..||||||||++||++++.+|
T Consensus 83 ~~~~~~i~~~~~~~~-~~~-~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p 158 (255)
T cd03236 83 LEGDVKVIVKPQYVD-LIP-K-AVKGKVGELLKKKDERGKLDELVDQLELR-HVLDRNIDQLSGGELQRVAIAAALARDA 158 (255)
T ss_pred hhcccceeeecchhc-cCc-h-HHHHHHHHHhchhHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 113567777642 221 1 222222221111 1235677889999986 4578899999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++||||||++||+.++..+.+.|.++
T Consensus 159 ~illlDEPts~LD~~~~~~l~~~l~~l 185 (255)
T cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIREL 185 (255)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999888764
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-30 Score=283.75 Aligned_cols=164 Identities=29% Similarity=0.410 Sum_probs=135.0
Q ss_pred CeEEEeeeEEEeCCCC--ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPGK--PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~--~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
-.++++||+|+||..+ ++|+++||.|++|+.++|||||||||||++++|.+++.|++|+|.+++. .+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 3599999999997543 6999999999999999999999999999999999999999999998752 36
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hh----hhhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GD----LALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~----~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
||.|.|+|. ....++.+++....++.+.+++.+.....+.. ++ ..-....+||||||||++|||||+
T Consensus 429 iglV~QePv---lF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 429 IGLVSQEPV---LFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred cCeeeechh---hhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHH
Confidence 999999984 23567888887666666666666555433321 01 111233469999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|+||||||||++||+++...+.++|.+.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~ 535 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKA 535 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999764
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=272.12 Aligned_cols=157 Identities=19% Similarity=0.204 Sum_probs=126.6
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
.|+++||+|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 59999999999642 36999999999999999999999999999999999999999999988641 3
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh-----ccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~-----~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
.++|++|++. .+. .+..++. .+...++++.++++.+++...... ....+||||||||++||||++.+|+
T Consensus 417 ~i~~v~q~~~-lf~--~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ 490 (555)
T TIGR01194 417 LFSAIFADFH-LFD--DLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRP 490 (555)
T ss_pred hCcEEccChh-hhh--hhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 5899999863 122 2332322 233356677888888887532111 1236799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHH
Q psy208 416 FLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+|||||||++||+.+.+.+.+.+
T Consensus 491 ililDE~ts~LD~~~~~~i~~~l 513 (555)
T TIGR01194 491 ILLFDEWAADQDPAFKRFFYEEL 513 (555)
T ss_pred EEEEeCCccCCCHHHHHHHHHHH
Confidence 99999999999999999987754
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-31 Score=236.53 Aligned_cols=162 Identities=25% Similarity=0.434 Sum_probs=133.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~ 344 (443)
|++++||+++|+ ++.+++++|++|++|.+++|+|||||||||||.+++.++++++|+|++.+.. +++.
T Consensus 1 MI~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 578999999995 6889999999999999999999999999999999999999999999987532 2444
Q ss_pred eccCcccccccchhHHHHHHH-hCCC-------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 345 FSQHHVDQLDMNLRCVQLLEA-AFPG-------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~-~~~~-------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
+-|.. .+....|+.+.+.- .||- .+...+.+.++.+.+. +..+++..+||||||||+-+|..++++.+.
T Consensus 80 LkQ~N--~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 80 LKQEN--HINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred HHhhc--hhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-chHHHhHHhcccchhhhhhhheeeeccCcE
Confidence 55543 23445555555432 2221 2234567788888886 678899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++||||.|+||+...-.+++.|++.
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrl 181 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRL 181 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999888753
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=294.00 Aligned_cols=164 Identities=29% Similarity=0.446 Sum_probs=138.4
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.+|+++||++.|++. +++++|+||+|.+||++||+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 479999999999642 57999999999999999999999999999999999999999999988641 2499
Q ss_pred EeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|+. .+....++.+.+.. ...+.. .+.+..+++.+++. +..+++++.|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~~--~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQFD--AIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEeccc--cCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999975 34445666666532 111222 23456789999996 5778999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||+|||+.+++.+.+.|.+.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=293.82 Aligned_cols=163 Identities=26% Similarity=0.434 Sum_probs=137.1
Q ss_pred eEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC------------------------
Q psy208 276 ILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP------------------------ 329 (443)
Q Consensus 276 ~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p------------------------ 329 (443)
-|+++||+|+|++ +.++|+|+||+|++|+++|||||+|||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4999999999963 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CCceEEEcC-----------ceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 330 ------------------------------TAGTRTVHR-----------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 330 ------------------------------~~G~i~~~~-----------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
++|+|.+++ +..+||++|++. + ...|+.+++....+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~--L-F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM--L-FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc--c-ccccHHHHHhcCCC
Confidence 599998864 236999999974 2 25688888876555
Q ss_pred CCCHHHHHHHHhcCCCCh------hhhhc----cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSG------DLALQ----FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~------~~~~~----~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
..+++++...+...++.. +-.+. ....||||||||++|||||+++|+||||||||++||.++.+.+.++|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 567778888777766532 11122 34579999999999999999999999999999999999999999998
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+.
T Consensus 1402 ~~~ 1404 (1466)
T PTZ00265 1402 VDI 1404 (1466)
T ss_pred HHH
Confidence 765
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-29 Score=256.01 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=143.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
+.+++++++|.|+ +..+.++|||+|.+||+.||+|.||||||||+++|.|+++|++|+|.++++ ..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 5799999999997 678999999999999999999999999999999999999999999998753 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCC-----C----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPG-----K----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~-----~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++.|++ .+.++.|+.+++.-.... . ..+++.++..++|+. -..+.++.+||-||||||.|.++|+.+
T Consensus 82 GMVhQHF--~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~ 158 (501)
T COG3845 82 GMVHQHF--MLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRG 158 (501)
T ss_pred cEEeecc--ccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCC-CCccceeecCCcchhHHHHHHHHHhcC
Confidence 9999985 467788988887543221 1 234567788899986 456899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++|||||||+.|-|...+.|.+.|++++
T Consensus 159 a~iLILDEPTaVLTP~E~~~lf~~l~~l~ 187 (501)
T COG3845 159 ARLLILDEPTAVLTPQEADELFEILRRLA 187 (501)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=276.66 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=121.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC---CCCCceEEEcCceEEEEeccCcc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII---SPTAGTRTVHRNLKFGYFSQHHV 350 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~~~~~~ig~~~Q~~~ 350 (443)
..+|+++|++++|+ ++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++|+| +|++|+..
T Consensus 175 ~~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I--------~~~~Q~~~ 245 (718)
T PLN03073 175 IKDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI--------LHVEQEVV 245 (718)
T ss_pred ceeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE--------EEEeccCC
Confidence 45799999999996 567999999999999999999999999999999999964 4566655 44444321
Q ss_pred cccccch-----------h--------H--------------------------------HHHHHHhC---C-CCCHHHH
Q psy208 351 DQLDMNL-----------R--------C--------------------------------VQLLEAAF---P-GKPQEEY 375 (443)
Q Consensus 351 ~~l~~~~-----------~--------~--------------------------------~~~~~~~~---~-~~~~~~~ 375 (443)
..+.+. . . +..+...+ . ...+.++
T Consensus 246 -g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~ 324 (718)
T PLN03073 246 -GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARA 324 (718)
T ss_pred -CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 000000 0 0 00000000 0 0123456
Q ss_pred HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 376 ~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+|..+||.....++++.+|||||||||+||++|+.+|++|||||||||||+.++.+|.+.|++|
T Consensus 325 ~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~ 390 (718)
T PLN03073 325 ASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW 390 (718)
T ss_pred HHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc
Confidence 678888999766678999999999999999999999999999999999999999999999999876
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=230.36 Aligned_cols=121 Identities=26% Similarity=0.325 Sum_probs=102.5
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce------EEEEeccCcccccccchhHHHH
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL------KFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~------~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
..++|+|+||+|.+|++++|+||||||||||||+|. +++|++.+.... .++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q--------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ--------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH---------------
Confidence 357999999999999999999999999999999996 368988765331 1223222
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC--CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA--PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~--p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+.+..+++.....++++.+||||||||++||++++.+ |++|||||||++||+.+++.+.+.|++
T Consensus 68 -------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~ 134 (176)
T cd03238 68 -------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG 134 (176)
T ss_pred -------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 35678888864447889999999999999999999999 999999999999999999999999876
Q ss_pred c
Q psy208 441 Y 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 135 ~ 135 (176)
T cd03238 135 L 135 (176)
T ss_pred H
Confidence 5
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=224.95 Aligned_cols=125 Identities=35% Similarity=0.578 Sum_probs=101.7
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++|+++.|+ ++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|++.+. .+. .. .
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~-~~~---~~-----~---- 67 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGK-DIA---KL-----P---- 67 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCE-Ecc---cC-----C----
Confidence 679999996 457999999999999999999999999999999999999999999987642 111 00 0
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
.. .....+++. .+||+||+||++||++++.+|+++||||||++||+.++..+.+.|
T Consensus 68 -------------~~---~~~~~i~~~--------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 68 -------------LE---ELRRRIGYV--------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred -------------HH---HHHhceEEE--------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 00 000111110 119999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.++
T Consensus 124 ~~~ 126 (157)
T cd00267 124 REL 126 (157)
T ss_pred HHH
Confidence 765
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-27 Score=263.50 Aligned_cols=161 Identities=22% Similarity=0.335 Sum_probs=130.0
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
-|+++|++.+|.++ .++|+|+||+|++||+|||||+.|||||||+.+|-.+..|.+|+|.+++ +.+++
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrls 1217 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLS 1217 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCe
Confidence 59999999999755 5799999999999999999999999999999999999999999999874 34789
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hh----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------AL----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
.+||+|.. + ..|+..++- -+...+++++-+.|+..++.... ++ .-..++|-||||-++|||||+++
T Consensus 1218 IIPQdPvL-F--sGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~ 1293 (1381)
T KOG0054|consen 1218 IIPQDPVL-F--SGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRK 1293 (1381)
T ss_pred eeCCCCce-e--cCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhcc
Confidence 99999852 2 223333331 12234566777777666653211 12 23468999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++||||||+|+++|+++-..+.+.|++
T Consensus 1294 skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1294 SKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred CCEEEEecccccCChHHHHHHHHHHHH
Confidence 999999999999999999998888865
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=288.96 Aligned_cols=162 Identities=21% Similarity=0.349 Sum_probs=135.6
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 59999999999644 5799999999999999999999999999999999999999999999875 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. ....+++++.+.++..++.... ......+||||||||++|||||+++
T Consensus 1314 iVpQdp~--LF-~gTIr~NL~~-~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~ 1389 (1495)
T PLN03232 1314 IIPQSPV--LF-SGTVRFNIDP-FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRR 1389 (1495)
T ss_pred EECCCCe--ee-CccHHHHcCC-CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999974 22 3477777743 2245677888888877764211 1223458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|++.
T Consensus 1390 ~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232 1390 SKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-29 Score=269.92 Aligned_cols=164 Identities=29% Similarity=0.430 Sum_probs=136.6
Q ss_pred CeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-------------
Q psy208 275 PILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 338 (443)
++|+++|+++.|+++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|++.+++
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999532 4699999999999999999999999999999999999999999998753
Q ss_pred --ceEEEEeccCcccccccchhHHHHHHH--hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 339 --NLKFGYFSQHHVDQLDMNLRCVQLLEA--AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 339 --~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
+..++|++|++. +.+..+..+++.. ..... ..+.+.+++..+|+. +..++++..||+||+||++|||+|
T Consensus 83 ~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL 159 (648)
T PRK10535 83 LRREHFGFIFQRYH--LLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARAL 159 (648)
T ss_pred HHhccEEEEeCCcc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHH
Confidence 125899999863 3444455555432 11111 133567788899986 567899999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+++.+.+.|+++
T Consensus 160 ~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l 190 (648)
T PRK10535 160 MNGGQVILADEPTGALDSHSGEEVMAILHQL 190 (648)
T ss_pred hcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=288.57 Aligned_cols=162 Identities=22% Similarity=0.317 Sum_probs=135.5
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+|+|+++ +++|+|+||+|++|+++||+|++|||||||+++|.|+++|++|+|.+++ +.+++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999644 4799999999999999999999999999999999999999999999875 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++... ...+++++.+.++..++... .......+||||||||++|||||+++
T Consensus 1317 iVpQdp~--LF-~GTIreNLd~~-~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~ 1392 (1622)
T PLN03130 1317 IIPQAPV--LF-SGTVRFNLDPF-NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRR 1392 (1622)
T ss_pred EECCCCc--cc-cccHHHHhCcC-CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 9999974 22 34777777432 24467788888887766321 11123458999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++.+.+.+.|++.
T Consensus 1393 p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1393 SKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=220.78 Aligned_cols=163 Identities=29% Similarity=0.381 Sum_probs=139.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 339 (443)
.|.++|+++.|+ ...+|-||+|+-..||.+.++||+|+|||||+|.|.=+..|.+|+..+..+
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 378999999996 567999999999999999999999999999999999999999999876431
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHhC---CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAAF---PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~~---~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
.++|+++|.. .+.+..++.+++.... .+.+ ..++.++|.++.+. +..++.|-.|||||+|||+|||||+
T Consensus 81 r~~vgmvfqqy--~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~-~~adr~plhlsggqqqrvaiaralm 157 (242)
T COG4161 81 RRNVGMVFQQY--NLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALM 157 (242)
T ss_pred HHhhhhhhhhh--ccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccc-cccccCceecccchhhhHHHHHHHh
Confidence 3589999974 4677888888875321 1222 34567889998886 6889999999999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.+|++|++||||+.|||+-...+.++|++..
T Consensus 158 mkpqvllfdeptaaldpeitaqvv~iikel~ 188 (242)
T COG4161 158 MEPQVLLFDEPTAALDPEITAQIVSIIKELA 188 (242)
T ss_pred cCCcEEeecCcccccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-29 Score=222.93 Aligned_cols=166 Identities=30% Similarity=0.404 Sum_probs=140.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 338 (443)
+|+++++++++.|++ ..-.+||||++.|||+.+|+|.+||||||||++|++-+.|+.|+|.+..
T Consensus 4 ~PLL~V~~lsk~Yg~-~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 4 KPLLSVSGLSKLYGP-GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred CcceeehhhhhhhCC-CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 578999999999964 5689999999999999999999999999999999999999999998742
Q ss_pred -----ceEEEEeccCcccccccchhHHHH----HHH---hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 339 -----NLKFGYFSQHHVDQLDMNLRCVQL----LEA---AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~~~~~~~~~----~~~---~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
+...|++.|+|.+.+.+..+.-.+ +.. ...+...+.+..+|.++.+..+..+..|..+|||++||+.|
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQi 162 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQI 162 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHH
Confidence 124799999998777665543322 221 11223456677899999998888888999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
||-|+..|.++++||||.|||...+..|.+.++.
T Consensus 163 ARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg 196 (258)
T COG4107 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196 (258)
T ss_pred HHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence 9999999999999999999999999999998865
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=234.27 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=110.4
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-EcCceEEEEeccCcccccccchhHHHHHHH--hC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-VHRNLKFGYFSQHHVDQLDMNLRCVQLLEA--AF 367 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~ 367 (443)
.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|. +.... + .+.+.+ .+.+..++.+++.. ..
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~-~-~~~~~~--~l~~~ltv~enl~~~~~~ 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDA-L-PLGANS--FILPGLTGEENARMMASL 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCce-e-cccccc--ccCCcCcHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999999986 44321 1 122221 23444566665532 11
Q ss_pred CCCCHHHHH-HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 368 PGKPQEEYR-RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 368 ~~~~~~~~~-~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
......+.. .+...+++. ...+++++.||+|||||++||++++.+|+++||||||+++|+.++..+.+.|.+
T Consensus 77 ~~~~~~~~~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~ 149 (213)
T PRK15177 77 YGLDGDEFSHFCYQLTQLE-QCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALAC 149 (213)
T ss_pred cCCCHHHHHHHHHHHhChh-HHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 122233322 233456665 456789999999999999999999999999999999999999999999887743
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=267.90 Aligned_cols=272 Identities=22% Similarity=0.275 Sum_probs=174.2
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHh---hhCCCe
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYL---QNWPTT 162 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L---~~~~~t 162 (443)
++..|++ .|..+|+....+++++.+|||||+| ..+.+|.+.| ++.+.|
T Consensus 465 ~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~T 543 (943)
T PRK00349 465 EIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNT 543 (943)
T ss_pred HHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 3456675 7889999754468999999999999 4666777666 455789
Q ss_pred EEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANR 236 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (443)
||+||||.+++. .||+|++| ++|++ ++.|+++++....+. ... .++..
T Consensus 544 VIvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~--------l~~---------~~l~~------- 597 (943)
T PRK00349 544 LIVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNS--------LTG---------QYLSG------- 597 (943)
T ss_pred EEEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhh--------eee---------hhhcc-------
Confidence 999999999987 59999999 78887 478888776321100 000 00000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcH
Q psy208 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGK 316 (443)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGK 316 (443)
+. . .+.+. .. .....+.|+++|++. ..|+|+||+|+.|++++|+|+|||||
T Consensus 598 ------------~~-~-~~~~~-~~--------~~~~~~~L~v~~l~~------~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 ------------KK-K-IEVPK-ER--------RKGNGKFLKLKGARE------NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred ------------cc-c-ccccc-cc--------cCCCcceEEecCCcc------CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 0 00000 00 001224689999862 25999999999999999999999999
Q ss_pred HHHHHHHH---------cCCCCCC------c------eEEEcC------------------------------ceEEEEe
Q psy208 317 TTLLKIIM---------GIISPTA------G------TRTVHR------------------------------NLKFGYF 345 (443)
Q Consensus 317 STLlk~l~---------G~~~p~~------G------~i~~~~------------------------------~~~ig~~ 345 (443)
|||++.+. +...+.. | .|.+.. ....||.
T Consensus 649 STLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~ 728 (943)
T PRK00349 649 STLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYK 728 (943)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCC
Confidence 99998763 1111110 1 000100 0001111
Q ss_pred ccCcccc--------------------c--c------------------------------cchhHHHHHHHhCCCCCHH
Q psy208 346 SQHHVDQ--------------------L--D------------------------------MNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 346 ~Q~~~~~--------------------l--~------------------------------~~~~~~~~~~~~~~~~~~~ 373 (443)
++....+ + + ...++.+.+..........
T Consensus 729 ~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~ 808 (943)
T PRK00349 729 PGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIA 808 (943)
T ss_pred cccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhh
Confidence 1110000 0 0 0012222221110001122
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+.|..+|+.....++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|.++
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l 879 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL 879 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 34567888898644578899999999999999999999999 999999999999999999999998765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=287.30 Aligned_cols=163 Identities=28% Similarity=0.353 Sum_probs=132.6
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------ceE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------NLK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------~~~ 341 (443)
.|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 59999999999742 3699999999999999999999999999999999999999999999832 125
Q ss_pred EEEeccCcccccccchhHHHHHHHhCC-----------------------------------------------------
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFP----------------------------------------------------- 368 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~----------------------------------------------------- 368 (443)
+||++|++. +.. .++.+++.....
T Consensus 462 Ig~V~Q~~~--LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 538 (1466)
T PTZ00265 462 IGVVSQDPL--LFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMR 538 (1466)
T ss_pred ccEeccccc--chh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcc
Confidence 899999863 222 467777653210
Q ss_pred ----CCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 369 ----GKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 369 ----~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++++.+.+..+++... .....+..||||||||++||||++.+|++|||||||++||+.+...+
T Consensus 539 ~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i 618 (1466)
T PTZ00265 539 KNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLV 618 (1466)
T ss_pred cccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHH
Confidence 1234556667777766421 12356789999999999999999999999999999999999999999
Q ss_pred HHHHccc
Q psy208 435 GKAINKY 441 (443)
Q Consensus 435 ~~~L~~~ 441 (443)
.++|.++
T Consensus 619 ~~~L~~~ 625 (1466)
T PTZ00265 619 QKTINNL 625 (1466)
T ss_pred HHHHHHH
Confidence 9999875
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=223.53 Aligned_cols=164 Identities=26% Similarity=0.374 Sum_probs=134.2
Q ss_pred eEEEeeeEEEeC----CC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------
Q psy208 276 ILQLSEVNFEYV----PG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----------- 338 (443)
Q Consensus 276 ~l~~~~l~~~y~----~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----------- 338 (443)
.|.++|++|+|- ++ -++++++||+++.||++++=||+|||||||||+|.|.+.|++|+|.+..
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 588999999883 12 3799999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEeccCcccccccchhHHHHHHH-----hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 339 --------NLKFGYFSQHHVDQLDMNLRCVQLLEA-----AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 339 --------~~~ig~~~Q~~~~~l~~~~~~~~~~~~-----~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
+..+||++|... .-+....++..+. ..+ ......+..+|.++.++...+.-+|.++||||+|||
T Consensus 84 pr~vl~vRr~TiGyVSQFLR--viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRV 161 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLR--VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRV 161 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHH--hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheeh
Confidence 235889988532 2233333333321 111 112346778999999999999999999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.|||.++.+-+||+|||||+.||...+..+.+.|.+-
T Consensus 162 NIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~ 198 (235)
T COG4778 162 NIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198 (235)
T ss_pred hhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=240.03 Aligned_cols=352 Identities=16% Similarity=0.218 Sum_probs=250.1
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEec------------CCceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIP------------SHISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~------------~~~~i~~l~ 52 (443)
.+.+|+++|++-+-.+.+++.+.+ +| .||+|+|.+. ....||.+.
T Consensus 6 ~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVh 85 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVH 85 (501)
T ss_pred EEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEe
Confidence 467888899887778888877776 22 2788999863 136799999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++.. +..|+.+-++-+.... ....++...+.+++.++...+||+-+
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~--------------------------------~~~~~~~~~~~~~i~~l~~~yGl~vd 133 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPS--------------------------------KGGLIDRRQARARIKELSERYGLPVD 133 (501)
T ss_pred eccccccccchhhhhhhcCccc--------------------------------cccccCHHHHHHHHHHHHHHhCCCCC
Confidence 99875 5567766554332100 00011122345688888999999853
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHH---hhhCCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENY---LQNWPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~---L~~~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.++.+++||=|+|| ..++-|-+. |+.-++|||+|||....+-++|||+-+
T Consensus 134 -p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTV 212 (501)
T COG3845 134 -PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV 212 (501)
T ss_pred -ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEE
Confidence 58999999999999 344444444 456789999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcccccc
Q psy208 183 LHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEV 262 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 262 (443)
|..|+++ |.++.-.+ .-.+++.+++ +- ..+....
T Consensus 213 LR~Gkvv---gt~~~~~~--------------~t~~ela~lM--vG----------------------~~v~~~~----- 246 (501)
T COG3845 213 LRRGKVV---GTVDPVAE--------------TTEEELAELM--VG----------------------REVVLRV----- 246 (501)
T ss_pred EeCCeEE---eeecCCCC--------------CCHHHHHHHh--cC----------------------Ccccccc-----
Confidence 9999964 44442000 0000111111 00 0000000
Q ss_pred ccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---
Q psy208 263 VLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--- 339 (443)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--- 339 (443)
.. .+..++.++|+++||+..-..+.+.++++||+|..||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.+.+.
T Consensus 247 --~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~ 323 (501)
T COG3845 247 --VK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVL 323 (501)
T ss_pred --cc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEecc
Confidence 00 112345789999999997543357899999999999999999999999999999999999999999988653
Q ss_pred ----------eEEEEeccCc-ccccccchhHHHHHHHh-CCC--------CC----HHHHHHHHhcCCCChhhhhccCCC
Q psy208 340 ----------LKFGYFSQHH-VDQLDMNLRCVQLLEAA-FPG--------KP----QEEYRRQLGGFGVSGDLALQFVGS 395 (443)
Q Consensus 340 ----------~~ig~~~Q~~-~~~l~~~~~~~~~~~~~-~~~--------~~----~~~~~~~L~~~gl~~~~~~~~~~~ 395 (443)
..++|+|.+. ...+-++.+..+++... +.. .. ...+.++++.|.+.......++.+
T Consensus 324 ~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~ 403 (501)
T COG3845 324 GRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARS 403 (501)
T ss_pred ccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhh
Confidence 2478999874 23344555666554321 110 11 234567888898876666778999
Q ss_pred CCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||.+||+.+||-+..+|++||+.+||.|||..+.+.+.+.|.+.
T Consensus 404 LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=274.17 Aligned_cols=267 Identities=22% Similarity=0.292 Sum_probs=167.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
.|++.+ ..+|+....+++++.+|||||+| ..+.+|.+.|+ +.+.|||+
T Consensus 455 ~RL~~L-~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIv 533 (1809)
T PRK00635 455 SRLSIL-IDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533 (1809)
T ss_pred HHHHHH-HhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 444433 46788754468999999999999 45666666664 45789999
Q ss_pred EecCHHHHhccCCcEEEEe------CCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLH------SQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~------~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 239 (443)
||||.+++ ++||+|++|. +|++ ++.|.++.+....+. .. ..+..
T Consensus 534 VeHd~~vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~--------l~---------~~~l~----------- 583 (1809)
T PRK00635 534 VEHDEQMI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS--------LT---------AKYLR----------- 583 (1809)
T ss_pred EeCcHHHH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH--------HH---------HHHhc-----------
Confidence 99999965 7999999997 4566 478887766321100 00 00000
Q ss_pred HHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHH
Q psy208 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTL 319 (443)
Q Consensus 240 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTL 319 (443)
+..... .+.. .....+.|++++++. ..|+++||+|++|++++|+|+||||||||
T Consensus 584 ---------~~~~~~-~~~~----------~~~~~~~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTL 637 (1809)
T PRK00635 584 ---------QELTIP-IPEK----------RTNSLGTLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSL 637 (1809)
T ss_pred ---------Cccccc-Cccc----------ccCCCCeEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHH
Confidence 000000 0000 001123688998862 26999999999999999999999999999
Q ss_pred HH---------HHHcCCCCC------------------------CceEEEcC-------------------ceEEEEecc
Q psy208 320 LK---------IIMGIISPT------------------------AGTRTVHR-------------------NLKFGYFSQ 347 (443)
Q Consensus 320 lk---------~l~G~~~p~------------------------~G~i~~~~-------------------~~~ig~~~Q 347 (443)
++ .|.|...+. ++.+++.+ -....|.++
T Consensus 638 l~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn 717 (1809)
T PRK00635 638 INDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFN 717 (1809)
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeec
Confidence 99 556653221 11122100 000001111
Q ss_pred C------------------ccccc------------------ccchhHHHHHHH-------hCCCC--CHHHHHHHHhcC
Q psy208 348 H------------------HVDQL------------------DMNLRCVQLLEA-------AFPGK--PQEEYRRQLGGF 382 (443)
Q Consensus 348 ~------------------~~~~l------------------~~~~~~~~~~~~-------~~~~~--~~~~~~~~L~~~ 382 (443)
. +.... ....++.+.+.. .+... ....+ ..|..+
T Consensus 718 ~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~v 796 (1809)
T PRK00635 718 TPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSL 796 (1809)
T ss_pred CCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHc
Confidence 1 00000 001122222210 01100 11223 477888
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhc---cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCM---AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~---~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+..-..++++.+|||||+||++||++|+ .+|++|||||||++||+.+++.|.+.|.++
T Consensus 797 GL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L 858 (1809)
T PRK00635 797 GLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL 858 (1809)
T ss_pred CCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 98632368999999999999999999997 699999999999999999999999999765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-28 Score=265.06 Aligned_cols=157 Identities=24% Similarity=0.282 Sum_probs=125.7
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC----------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR---------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~---------- 338 (443)
++++++|++...+|++++ .+++|+++||+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 458999975456999999 9999999999999999999999999999999999986 321
Q ss_pred ---ceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 339 ---NLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
..++++.+|....... ...++.+++... .....+.+++..+++. ...++++.+|||||||||+||++|+.+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p 231 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDA 231 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1235666664321110 112455555321 1234678889999996 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|+++
T Consensus 232 ~lllLDEPts~LD~~~~~~l~~~i~~l 258 (590)
T PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIREL 258 (590)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=265.89 Aligned_cols=160 Identities=25% Similarity=0.401 Sum_probs=130.1
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC--CceEEEcCc-------eEEEEeccC
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT--AGTRTVHRN-------LKFGYFSQH 348 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~~~-------~~ig~~~Q~ 348 (443)
..+|++++|+ ++.+|+|+|+++++|+++||+|||||||||||++|+|..+|+ +|+|.+++. ..+||++|+
T Consensus 70 ~~~~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 70 KISDETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 4667888885 578999999999999999999999999999999999999885 899988652 358999998
Q ss_pred cccccccchhHHHHHHHh--C--C-CCCH----HHHHHHHhcCCCChhhh-----hccCCCCCHHHHHHHHHHHHhccCC
Q psy208 349 HVDQLDMNLRCVQLLEAA--F--P-GKPQ----EEYRRQLGGFGVSGDLA-----LQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~--~--~-~~~~----~~~~~~L~~~gl~~~~~-----~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.. +....++.+++... . + .... +.+.+++..+|+.. .. ++.+..|||||||||+||++|+.+|
T Consensus 149 ~~--l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P 225 (659)
T PLN03211 149 DI--LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK-CENTIIGNSFIRGISGGERKRVSIAHEMLINP 225 (659)
T ss_pred cc--cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-hcCceeCCCCCCCcChhhhhHHHHHHHHHhCC
Confidence 53 44455666665321 1 1 1122 33667888999853 22 3457789999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||+|||+.++..+.+.|+++
T Consensus 226 ~iLlLDEPtsgLD~~~~~~l~~~L~~l 252 (659)
T PLN03211 226 SLLILDEPTSGLDATAAYRLVLTLGSL 252 (659)
T ss_pred CEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999999999865
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=261.27 Aligned_cols=269 Identities=21% Similarity=0.275 Sum_probs=166.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLL 164 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tvi 164 (443)
..|++. |..+|+....+++++.+|||||+| ..+.+|.+.|+ +.+.|||
T Consensus 465 ~~rl~~-L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVI 543 (924)
T TIGR00630 465 KERLGF-LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVI 543 (924)
T ss_pred HHHHHh-HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344433 677888754468999999999999 45666666663 4577999
Q ss_pred EEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 165 VVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRAS 238 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 238 (443)
+||||.+++. .||+|++| ++|++. +.|+++.+....+ .... .++..
T Consensus 544 vVeHd~~~i~-~aD~vi~LgpgaG~~~G~Iv-~~g~~~el~~~~~--------~lt~---------~~l~~--------- 595 (924)
T TIGR00630 544 VVEHDEETIR-AADYVIDIGPGAGIHGGEVV-ASGTPEEILANPD--------SLTG---------QYLSG--------- 595 (924)
T ss_pred EEECCHHHHh-hCCEEEEecccccCCCCEEe-eccCHHHHhcCch--------heee---------ecccc---------
Confidence 9999999997 89999999 788874 6787665422100 0000 00000
Q ss_pred HHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHH
Q psy208 239 SVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTT 318 (443)
Q Consensus 239 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKST 318 (443)
+ ... +.+. . ......++|+++|++. ..|+|+||+|+.|++++|+|+|||||||
T Consensus 596 ----------~-~~~-~~~~-~--------~~~~~~~~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKST 648 (924)
T TIGR00630 596 ----------K-KKI-EVPK-E--------RRPGNGKFLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKST 648 (924)
T ss_pred ----------c-ccc-cccc-c--------ccCCCcceEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHH
Confidence 0 000 0000 0 0001224789999873 2599999999999999999999999999
Q ss_pred HHH-HHH--------c-CCCCC-CceEEE-cCceEEEEeccCccc-----------------------------------
Q psy208 319 LLK-IIM--------G-IISPT-AGTRTV-HRNLKFGYFSQHHVD----------------------------------- 351 (443)
Q Consensus 319 Llk-~l~--------G-~~~p~-~G~i~~-~~~~~ig~~~Q~~~~----------------------------------- 351 (443)
|++ +|. + ..+|. ...+.- ..-..+-++.|.+..
T Consensus 649 Ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~ 728 (924)
T TIGR00630 649 LINDTLYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPG 728 (924)
T ss_pred HHHHHHHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChh
Confidence 998 331 1 11111 000000 000001111111100
Q ss_pred ----------------------------------------cccc----------------chhHHHHHHHhCCC-CCHHH
Q psy208 352 ----------------------------------------QLDM----------------NLRCVQLLEAAFPG-KPQEE 374 (443)
Q Consensus 352 ----------------------------------------~l~~----------------~~~~~~~~~~~~~~-~~~~~ 374 (443)
.+.. ..++.+.+. .+.. .....
T Consensus 729 ~FSfN~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~-f~~~~~~i~~ 807 (924)
T TIGR00630 729 RFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYE-FFEAVPSISR 807 (924)
T ss_pred hcCCCCCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHH-HHHhccchhH
Confidence 0000 001111110 0100 01123
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc---CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA---APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~---~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...+|..+|+.....++++.+|||||+||+.||++|+. +|+++||||||++||+.++..|.+.|.++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l 877 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL 877 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 45677888986445788999999999999999999997 59999999999999999999999999765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-29 Score=217.28 Aligned_cols=123 Identities=37% Similarity=0.566 Sum_probs=100.5
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEEeccCcccccccchhHHH
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGYFSQHHVDQLDMNLRCVQ 361 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~~~Q~~~~~l~~~~~~~~ 361 (443)
|+|+||+|.+|++++|+|+||||||||+++|+|.++|++|.|.+.. ...++|++|++ .+....++.+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDP--QLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSH--CHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccc--cccccccccc
Confidence 6899999999999999999999999999999999999999998763 23589999984 3444445554
Q ss_pred HHHHhCCCCCHHHHHHHHhcCCCCh---hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 362 LLEAAFPGKPQEEYRRQLGGFGVSG---DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 362 ~~~~~~~~~~~~~~~~~L~~~gl~~---~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+ ....++..++..+++.. ...++++..||+||||||+||++++.+|++||||||||
T Consensus 79 ~-------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N-------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H-------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c-------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 4 12345677777777642 23344459999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-29 Score=234.69 Aligned_cols=150 Identities=25% Similarity=0.369 Sum_probs=111.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce----------EEEEeccC-ccccccc----
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL----------KFGYFSQH-HVDQLDM---- 355 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~----------~ig~~~Q~-~~~~l~~---- 355 (443)
++.+|+||+|++|++++++|||||||||+||+|+|++.|++|.|.+.+.. .+++++-. ....++.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 48899999999999999999999999999999999999999999886421 13332211 1001111
Q ss_pred chhHHHHHHHhCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 356 NLRCVQLLEAAFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 356 ~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
+..+...+.. .++ .-.++...+.+.+++. ...+.++..||-|||.|+.||.+|+++|+||+|||||-|||..++..+
T Consensus 118 s~~v~~~Iy~-Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~i 195 (325)
T COG4586 118 SLEVLKLIYE-IPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANI 195 (325)
T ss_pred hHHHHHHHHh-CCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHH
Confidence 1111122211 111 1123344455566765 467899999999999999999999999999999999999999999999
Q ss_pred HHHHcccc
Q psy208 435 GKAINKYT 442 (443)
Q Consensus 435 ~~~L~~~~ 442 (443)
.++|++|.
T Consensus 196 r~Flke~n 203 (325)
T COG4586 196 REFLKEYN 203 (325)
T ss_pred HHHHHHHH
Confidence 99999885
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-29 Score=221.33 Aligned_cols=167 Identities=25% Similarity=0.349 Sum_probs=140.9
Q ss_pred CeEEEeeeEEEeCCC--------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------
Q psy208 275 PILQLSEVNFEYVPG--------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------- 339 (443)
++|+++|++++|... ..+++.|||+++.|+.+||||.||||||||.|+|+|.++|++|+|.+++.
T Consensus 3 ~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy 82 (267)
T COG4167 3 TLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDY 82 (267)
T ss_pred chhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccch
Confidence 468999999988521 24789999999999999999999999999999999999999999988642
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHH---hCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..|-+++|+|...+++...+-..+.. ..... ..+.+.+-|..+|+.++..+-++..||.||||||+|||
T Consensus 83 ~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLAR 162 (267)
T COG4167 83 SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALAR 162 (267)
T ss_pred HhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHH
Confidence 35788999998888877765544422 11122 23457778999999999999999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+.+|.++|.||..++||...+.+|.+...+.
T Consensus 163 ALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL 195 (267)
T COG4167 163 ALILRPKIIIADEALASLDMSMRSQLINLMLEL 195 (267)
T ss_pred HHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=236.25 Aligned_cols=163 Identities=22% Similarity=0.298 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCC-----------------------CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 276 ILQLSEVNFEYVPG-----------------------KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-----------------------~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.|+++||++-|+.. ..-+.|+||+|+.||+.+|.|-+|||||||+|+|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 47888888888621 1247899999999999999999999999999999999999999
Q ss_pred eEEEcC---------------ceEEEEeccCcccccccchhHHHHHHHhC--CCC----CHHHHHHHHhcCCCChhhhhc
Q psy208 333 TRTVHR---------------NLKFGYFSQHHVDQLDMNLRCVQLLEAAF--PGK----PQEEYRRQLGGFGVSGDLALQ 391 (443)
Q Consensus 333 ~i~~~~---------------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~--~~~----~~~~~~~~L~~~gl~~~~~~~ 391 (443)
+|.+++ +.+++++||+. .+.+..++.++..... .+. .++.+.+.|+.+|+. ...++
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~F--aLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~-~~~~~ 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSF--ALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE-GYADK 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhh--ccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch-hhhhc
Confidence 998864 24689999975 4667788888765321 122 245678889999997 57889
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|.+|||||||||.|||||+.+|+|||+|||+++|||--+..+.+.|.++
T Consensus 161 yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~L 210 (386)
T COG4175 161 YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210 (386)
T ss_pred CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888877654
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.3e-28 Score=243.33 Aligned_cols=164 Identities=27% Similarity=0.366 Sum_probs=129.2
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-.|.++++++.=++. +++++++||++.+|+.+|||||+|||||||.|+|.|..+|.+|.|++++ ...|
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hi 412 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHI 412 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhcccc
Confidence 369999999865443 5899999999999999999999999999999999999999999998864 2469
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhcc----CCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQF----VGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~~----~~~LSgGekqRl~lA~al~~ 412 (443)
||+||+- +.+ ..|+-+++...-.+.+.+.+.+....-|.. ++-.+.. ...||||||||++|||||..
T Consensus 413 GYLPQdV-eLF--~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 413 GYLPQDV-ELF--DGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred CcCcccc-eec--CCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 9999985 222 457788887654444444333322222211 0111233 35799999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|.+++||||-++||.+...+|.++|...
T Consensus 490 ~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~ 518 (580)
T COG4618 490 DPFLVVLDEPNSNLDSEGEAALAAAILAA 518 (580)
T ss_pred CCcEEEecCCCCCcchhHHHHHHHHHHHH
Confidence 99999999999999999999999998753
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-28 Score=266.11 Aligned_cols=163 Identities=26% Similarity=0.364 Sum_probs=133.7
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-|+++||+|+||.. .++|+|+||+|++|+.+|||||+||||||.+-+|-.++.|++|.|.+++ +.++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 38999999999742 4699999999999999999999999999999999999999999999864 2369
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhc----cCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQ----FVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~----~~~~LSgGekqRl~lA~al~~ 412 (443)
|.|.|+|.. .+.|+.+++.......+++++.+.+...+.. ++-.+. +..+||||||||++||||+++
T Consensus 1067 ~lVsQEP~L---F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilR 1143 (1228)
T KOG0055|consen 1067 GLVSQEPVL---FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILR 1143 (1228)
T ss_pred ceeccCchh---hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHc
Confidence 999999842 2457888886553334666666655543321 122233 445899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||||||.|++||.+|...+.++|.+-
T Consensus 1144 nPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1144 NPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred CCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence 99999999999999999999999999753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=218.26 Aligned_cols=166 Identities=26% Similarity=0.374 Sum_probs=136.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCc------------e
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRN------------L 340 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~------------~ 340 (443)
.+|+++||+.+..+.+.+|++|||+|++||+.+|+||||||||||.++|+|.- .+++|+|.+.+. .
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 47999999999964358999999999999999999999999999999999975 779999988642 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHhCC----C-----CCHHHHHHHHhcCCCChhhhhccCCC-CCHHHHHHHHHHHHh
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAFP----G-----KPQEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMC 410 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~~----~-----~~~~~~~~~L~~~gl~~~~~~~~~~~-LSgGekqRl~lA~al 410 (443)
.+...+|.|... +..+..+++..... . .....+++.++.++++..++++.+.. +|||||+|.-|+.++
T Consensus 82 GifLafQ~P~ei--~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~ 159 (251)
T COG0396 82 GIFLAFQYPVEI--PGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLL 159 (251)
T ss_pred CCEEeecCCccC--CCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHH
Confidence 356678887542 33444444432111 1 12456778899999998899999875 999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+.+|++.|||||-||||+++.+.+.+.++.|.
T Consensus 160 ~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr 191 (251)
T COG0396 160 LLEPKLAILDEPDSGLDIDALKIVAEGINALR 191 (251)
T ss_pred hcCCCEEEecCCCcCccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-28 Score=230.75 Aligned_cols=144 Identities=24% Similarity=0.438 Sum_probs=124.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ceEEEEeccCcccccccchhH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NLKFGYFSQHHVDQLDMNLRC 359 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~~ig~~~Q~~~~~l~~~~~~ 359 (443)
+++|.++.-.++||.|++|||||||+|+|+|+.+|+.|.|.+++ ..+|||+||+. .+++..++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA--RLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA--RLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc--ccccceEE
Confidence 67888888789999999999999999999999999999998754 24799999985 46777777
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
..++..........+...+.+.+|+. ..++++|.+|||||||||+|+|||+..|++|+||||.+.||..-+..++-.|.
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylE 172 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIE-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLE 172 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcH-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHH
Confidence 77776443333456778888889985 68899999999999999999999999999999999999999999999888876
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
+.
T Consensus 173 RL 174 (352)
T COG4148 173 RL 174 (352)
T ss_pred HH
Confidence 54
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=272.72 Aligned_cols=159 Identities=19% Similarity=0.298 Sum_probs=129.2
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.++++|++|+|++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|++. +
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--~i~yv~Q~~~--l- 710 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--SVAYVPQQAW--I- 710 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--EEEEEcCCcc--c-
Confidence 69999999999643 5799999999999999999999999999999999999999999998875 6999999863 2
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
.+.++.+++....+ ..++.+.+.+...++..+ ....+..+||||||||++||||++.+|+++||||||+
T Consensus 711 ~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~s 789 (1522)
T TIGR00957 711 QNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 789 (1522)
T ss_pred cCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 24577777753221 233444444443332211 2345678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHcc
Q psy208 425 HLDIETIEALGKAINK 440 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~~ 440 (443)
+||+.+.+.+.+.+..
T Consensus 790 aLD~~~~~~i~~~l~~ 805 (1522)
T TIGR00957 790 AVDAHVGKHIFEHVIG 805 (1522)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 9999999999988753
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-27 Score=275.93 Aligned_cols=161 Identities=23% Similarity=0.389 Sum_probs=134.5
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEE
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig 343 (443)
.|+++||+++|++ .+++|+|+||+|++|+++||+|++|||||||+++|+|+++ ++|+|.+++ +.+++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999974 3689999999999999999999999999999999999996 799998864 23699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh------hhcc----CCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL------ALQF----VGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~------~~~~----~~~LSgGekqRl~lA~al~~~ 413 (443)
|+||++. +. ..|+.+++.. +...+++++.++|...++.... .+.. ..+||||||||++|||||+++
T Consensus 1296 ~IpQdp~--LF-~GTIR~NLdp-~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~ 1371 (1490)
T TIGR01271 1296 VIPQKVF--IF-SGTFRKNLDP-YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSK 1371 (1490)
T ss_pred EEeCCCc--cC-ccCHHHHhCc-ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCC
Confidence 9999974 22 3477787742 2344678888999988874211 1222 237999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||.++...+.+.|++.
T Consensus 1372 ~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271 1372 AKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=275.62 Aligned_cols=163 Identities=27% Similarity=0.344 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCceEEEcCc-------eEE
Q psy208 276 ILQLSEVNFEYV---PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS---PTAGTRTVHRN-------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~---~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~-------~~i 342 (443)
+++++||+++|+ +.+.+|+|+|++|++|+++||+|||||||||||++|+|..+ |++|+|.+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 589999999994 23579999999999999999999999999999999999997 78899988652 358
Q ss_pred EEeccCcccccccchhHHHHHHHh----CC-CCC----HHHHHHHHhcCCCChhhhhccCC----CCCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA----FP-GKP----QEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~----~LSgGekqRl~lA~a 409 (443)
||++|++. +....|+.+++... .+ ... .+.+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 839 ~yv~Q~~~--~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQDL--HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeeccccc--CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 99999753 34456777766421 11 112 23467889999986 45677776 799999999999999
Q ss_pred hccCCC-eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPN-FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~-lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|+ ||||||||+|||..+...+.+.|+++
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l 948 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL 948 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 999997 99999999999999999999999875
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-27 Score=241.58 Aligned_cols=159 Identities=31% Similarity=0.474 Sum_probs=121.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--eEEE-EeccCcccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--LKFG-YFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--~~ig-~~~Q~~~~~ 352 (443)
-|.+.+++..|+ ++.+|.+-++++..|-++||+|+||+|||||||+|+. |.|..-+. ...| +++-. ...
T Consensus 80 Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~veqE~~g~~t~~~-~~~ 151 (582)
T KOG0062|consen 80 DIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVEQEVRGDDTEAL-QSV 151 (582)
T ss_pred ceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCchhheeccchHHH-hhh
Confidence 378889999996 6889999999999999999999999999999999986 33322110 0111 11110 111
Q ss_pred cccchhHHHHHHHh---CCCCCHHHHHH-HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 353 LDMNLRCVQLLEAA---FPGKPQEEYRR-QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 353 l~~~~~~~~~~~~~---~~~~~~~~~~~-~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
+..+....+++... .......++.. +|..+||+.+...+|+++||||.|.|++|||||..+|++|||||||||||+
T Consensus 152 l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 152 LESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred hhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 22333333443321 11113344555 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccc
Q psy208 429 ETIEALGKAINKYT 442 (443)
Q Consensus 429 ~s~~~l~~~L~~~~ 442 (443)
.++.||++.|..|+
T Consensus 232 ~av~WLe~yL~t~~ 245 (582)
T KOG0062|consen 232 VAVAWLENYLQTWK 245 (582)
T ss_pred HHHHHHHHHHhhCC
Confidence 99999999999886
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-28 Score=240.75 Aligned_cols=162 Identities=29% Similarity=0.462 Sum_probs=129.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
-++++||+|.|++++++|+||||++.+|+.+|||||+|+||||++|+|..++...+|.|.+++. ..||.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGV 616 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGV 616 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCc
Confidence 4899999999998999999999999999999999999999999999999999999999999752 36999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc-------CCCChh---hhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG-------FGVSGD---LALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-------~gl~~~---~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||+... .+.|+..++...-+..+.+++.+.... ++|+.. ....+.-.|||||||||+|||+++..|
T Consensus 617 VPQDtvL---FNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 617 VPQDTVL---FNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred ccCccee---ecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 9998642 233555555444444444444433322 233321 112234479999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+++|||.|++||..+..++..+|.+
T Consensus 694 ~iIlLDEATSALDT~tER~IQaaL~r 719 (790)
T KOG0056|consen 694 SIILLDEATSALDTNTERAIQAALAR 719 (790)
T ss_pred cEEEEcchhhhcCCccHHHHHHHHHH
Confidence 99999999999999999999988865
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-27 Score=213.76 Aligned_cols=163 Identities=25% Similarity=0.345 Sum_probs=137.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+ +..+++++||+|.+|+.-+|||||||||||++.+|+|..+|+.|++.+++. ..
T Consensus 4 ~iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 5799999999996 578999999999999999999999999999999999999999999988652 24
Q ss_pred EEEeccCcccccccchhHHHHHHHh--------------CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA--------------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA 407 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA 407 (443)
||--+|.|. .....++.+++.-. .......++..+|+..|+. +..+...+.||-||||++.|+
T Consensus 83 IGRKFQ~Pt--Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~-~~~~~~A~~LSHGqKQwLEIG 159 (249)
T COG4674 83 IGRKFQKPT--VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG-DERDRLAALLSHGQKQWLEIG 159 (249)
T ss_pred cCccccCCe--ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccc-hhhhhhhhhhccchhhhhhhh
Confidence 777788763 34556666665321 1122344688999999996 577889999999999999999
Q ss_pred HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 408 ~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..++++|++|+||||++|+--+..+...+.|+..
T Consensus 160 Mll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l 193 (249)
T COG4674 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193 (249)
T ss_pred eeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888887754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=272.46 Aligned_cols=159 Identities=26% Similarity=0.420 Sum_probs=130.6
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcCceEEEEeccCccc
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHRNLKFGYFSQHHVD 351 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~~~~ig~~~Q~~~~ 351 (443)
..|+++|++|+|++ ++++|+|+||+|++|+.++|+||+|||||||+++|+|+++|++ |+|.+.+ .++|++|++.
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~--~Iayv~Q~p~- 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG--TVAYVPQVSW- 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC--eEEEEcCccc-
Confidence 35999999999964 2579999999999999999999999999999999999999999 9998743 6999999973
Q ss_pred ccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
. .+.|+.+++.-..+ .+++++.+++...++..+.. .....+|||||||||+||||++.+|++|||||
T Consensus 690 L--fngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 690 I--FNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred c--CCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 2 34678888764322 35677888888777753321 12345799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHH-HHHc
Q psy208 422 PTNHLDIETIEALG-KAIN 439 (443)
Q Consensus 422 PTn~LD~~s~~~l~-~~L~ 439 (443)
||++||+.+.+.+. +.+.
T Consensus 767 ptSALD~~~~~~I~~~~l~ 785 (1622)
T PLN03130 767 PLSALDAHVGRQVFDKCIK 785 (1622)
T ss_pred CccccCHHHHHHHHHHHhh
Confidence 99999999887765 4444
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=271.73 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=128.4
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
..++++|++|+|++ ++++|+|+||+|++|++++|+||+|||||||+++|+|+++|++|.+.. -+..++|++|++. .
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~-~~~~Iayv~Q~p~-L 690 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV-IRGSVAYVPQVSW-I 690 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE-ecCcEEEEcCccc-c
Confidence 35999999999964 357999999999999999999999999999999999999999987643 2346999999973 2
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhh----------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLA----------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
.+.|+.+++.-.. ..+++++.++++..++..+.. .....+||||||||++||||++++|++||||||
T Consensus 691 --f~gTIreNI~fg~-~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 691 --FNATVRENILFGS-DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred --ccccHHHHhhcCC-ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2457888876432 245677778887777643321 123447999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy208 423 TNHLDIETIEALGKA 437 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~ 437 (443)
|++||..+.+.+.+.
T Consensus 768 tSaLD~~t~~~I~~~ 782 (1495)
T PLN03232 768 LSALDAHVAHQVFDS 782 (1495)
T ss_pred ccccCHHHHHHHHHH
Confidence 999999998877543
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=235.84 Aligned_cols=131 Identities=26% Similarity=0.383 Sum_probs=109.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEeccCcccccccchhHHHHHHHh--CCCCC----H
Q psy208 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----Q 372 (443)
Q Consensus 308 iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~ 372 (443)
|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|++. +.+..++.+++... ..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYA--LFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcc--ccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 68999999999999999999999999988542 25899999853 44556777766432 11111 2
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+..+++.+++. +..++++.+|||||||||+|||+|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 79 ~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 79 PRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 3567889999996 5678999999999999999999999999999999999999999999999998764
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.6e-27 Score=203.51 Aligned_cols=159 Identities=28% Similarity=0.402 Sum_probs=131.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcC---------ceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHR---------NLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~---------~~~ig 343 (443)
++.++||+...+ +..+|.++||+|.+||++-|.||+|||||||+..+.|.+.++ +|+++++. ...+|
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~G 80 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIG 80 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhhee
Confidence 578999999885 578999999999999999999999999999999999999875 78888764 24699
Q ss_pred EeccCcccccccchhHHHHHHHhCCC----C-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPG----K-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~----~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi 418 (443)
+++|++ .+.+..++.+++.-..+. . ....+...|.+.|+. ...++.|.+||||||.||+|.|+|+..|++|+
T Consensus 81 iLFQD~--lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lL 157 (213)
T COG4136 81 ILFQDA--LLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALL 157 (213)
T ss_pred eeeccc--ccccccccccceEEecCcccccHHHHhhHHHHHHHhccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceee
Confidence 999986 345555655554322221 1 233466788999987 46789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHH
Q psy208 419 LDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 419 LDEPTn~LD~~s~~~l~~~L 438 (443)
||||++.||..-+..+.+..
T Consensus 158 LDEPFS~LD~ALR~qfR~wV 177 (213)
T COG4136 158 LDEPFSRLDVALRDQFRQWV 177 (213)
T ss_pred eCCchhHHHHHHHHHHHHHH
Confidence 99999999998888777654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=227.61 Aligned_cols=169 Identities=20% Similarity=0.333 Sum_probs=140.8
Q ss_pred CCeEEEeeeEEEeC---CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-----CCceEEEcC-------
Q psy208 274 PPILQLSEVNFEYV---PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-----TAGTRTVHR------- 338 (443)
Q Consensus 274 ~~~l~~~~l~~~y~---~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-----~~G~i~~~~------- 338 (443)
.++|+++|+++.|. +...++++|||+|.+||.+||||.+|||||-..+.|+|+++. -+|+|.+++
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46899999999995 235799999999999999999999999999999999999865 367887653
Q ss_pred --------ceEEEEeccCcccccccchhHHHHHHHh---CCCC----CHHHHHHHHhcCCCCh--hhhhccCCCCCHHHH
Q psy208 339 --------NLKFGYFSQHHVDQLDMNLRCVQLLEAA---FPGK----PQEEYRRQLGGFGVSG--DLALQFVGSLSGGQK 401 (443)
Q Consensus 339 --------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~---~~~~----~~~~~~~~L~~~gl~~--~~~~~~~~~LSgGek 401 (443)
..+|+++||+|...+++-.++...+... ..+. ...++.++|..+|+.. ...+.+|++||||||
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqR 163 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQR 163 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchh
Confidence 2379999999988888877765544321 1122 2456778999999964 346789999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||.||.||+.+|++||.||||.+||...+.++.+.|++..
T Consensus 164 QRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq 204 (534)
T COG4172 164 QRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQ 204 (534)
T ss_pred hHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-26 Score=251.81 Aligned_cols=150 Identities=27% Similarity=0.336 Sum_probs=124.3
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCce--------EEEEeccCcccccccch
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRNL--------KFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~--------~ig~~~Q~~~~~l~~~~ 357 (443)
++++|+|+|++|++|+.++|+|||||||||||++|+|..+|. +|+|.+++.. .+||++|++ .+....
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~--~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD--LFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc--ccCccC
Confidence 467999999999999999999999999999999999999885 7999886532 479999985 345566
Q ss_pred hHHHHHHH--h--CCC-CC----HHHHHHHHhcCCCChhhhhccCC------CCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 358 RCVQLLEA--A--FPG-KP----QEEYRRQLGGFGVSGDLALQFVG------SLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 358 ~~~~~~~~--~--~~~-~~----~~~~~~~L~~~gl~~~~~~~~~~------~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
|+.+++.- . .+. .. ...+..+++.+|+. +..+++++ .|||||||||+||++|+.+|++|+||||
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR-KCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCch-hcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 77776642 1 111 11 23577889999986 45667776 4999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+.+...+.+.|++.
T Consensus 194 tsgLD~~~~~~l~~~L~~l 212 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGL 212 (617)
T ss_pred CcchhHHHHHHHHHHHHHH
Confidence 9999999999999999865
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=233.90 Aligned_cols=160 Identities=28% Similarity=0.422 Sum_probs=123.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccc---
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQ--- 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~--- 352 (443)
-+.++|++++|. +..+++|++|++.+|+++||+|+|||||||+|++|.|-..|..-.+.+. .+.++....
T Consensus 75 dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y------~ls~e~~ps~~~ 147 (614)
T KOG0927|consen 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFY------LLSREIEPSEKQ 147 (614)
T ss_pred cceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchh------hhcccCCCchHH
Confidence 489999999996 5789999999999999999999999999999999999999865544221 111111000
Q ss_pred ----cc-----------------------cch----hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 353 ----LD-----------------------MNL----RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 353 ----l~-----------------------~~~----~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
.. ... ...+.+........+.++..+|..+||.....++.+.+||||++
T Consensus 148 av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwr 227 (614)
T KOG0927|consen 148 AVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWR 227 (614)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHH
Confidence 00 000 00000001111122345667888999999999999999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|++|||+|+.+|++|+|||||||||++++.+|++.|.+|.
T Consensus 228 mR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d 268 (614)
T KOG0927|consen 228 MRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD 268 (614)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999885
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-26 Score=263.95 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=132.7
Q ss_pred eEEEeeeEEEeC------------CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc--
Q psy208 276 ILQLSEVNFEYV------------PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN-- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~------------~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 339 (443)
.++++||++.++ +.+.+|+|+|+.|++|++++|+|||||||||||++|+|..++ .+|+|.+++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999999874 124699999999999999999999999999999999999763 7899987641
Q ss_pred ------eEEEEeccCcccccccchhHHHHHHHh----CC-CCCH----HHHHHHHhcCCCChhhhhccC-----CCCCHH
Q psy208 340 ------LKFGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKPQ----EEYRRQLGGFGVSGDLALQFV-----GSLSGG 399 (443)
Q Consensus 340 ------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~~----~~~~~~L~~~gl~~~~~~~~~-----~~LSgG 399 (443)
..+||++|+.. +.+..|+.+.+... .+ ..+. ..+.++++.+++. +..++.+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d~--~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQNDI--HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEccccc--cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHH
Confidence 24899999853 44566777776421 11 1122 2367889999986 4566665 589999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||+||++|+.+|++|+|||||+|||+.+...+.+.|+++
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=212.38 Aligned_cols=162 Identities=27% Similarity=0.389 Sum_probs=130.3
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------e
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~ 340 (443)
|+.+.|+.+.|..+ +++|.++|++|..|+++.|+|.||||||||+++|+|.++|++|+|.+++. .
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 35677777776533 57999999999999999999999999999999999999999999998642 1
Q ss_pred EEEEeccCcccccccchhHHHHHHHhC-C----CC-------CHHHHHHHHhcCC--CChhhhhccCCCCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAAF-P----GK-------PQEEYRRQLGGFG--VSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~~-~----~~-------~~~~~~~~L~~~g--l~~~~~~~~~~~LSgGekqRl~l 406 (443)
.++-++|+|.....+..|+.+++.-.. . +. .....+..+..++ +. ..++.+++-|||||||-|+|
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLe-nrL~~~iglLSGGQRQalsL 159 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLE-NRLSDRIGLLSGGQRQALSL 159 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchh-hhhcChhhhccchHHHHHHH
Confidence 356688998777778888888874321 1 11 1223445566544 43 46678999999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
+.|.+++|++|+|||-|++|||.+.+.+++.-
T Consensus 160 ~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT 191 (263)
T COG1101 160 LMATLHPPKILLLDEHTAALDPKTAEFVMELT 191 (263)
T ss_pred HHHhcCCCcEEEecchhhcCCcchHHHHHHHH
Confidence 99999999999999999999999999888754
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=211.06 Aligned_cols=148 Identities=28% Similarity=0.328 Sum_probs=116.4
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH--HhC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAF 367 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~--~~~ 367 (443)
.++|+||||++.+||++||||+||||||||||+|+|.++|++|+|.+.++. +++..- ...+++..|..+++. ..+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v--~~li~l-g~Gf~pelTGreNi~l~~~~ 116 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV--APLIEL-GAGFDPELTGRENIYLRGLI 116 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE--ehhhhc-ccCCCcccchHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999987643 322211 123455566666543 334
Q ss_pred CCCCHHHHH----HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 PGKPQEEYR----RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ~~~~~~~~~----~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.+.+++. .+.+--.+ ++..++|+.++|.||+.||+++.+...+|++||+||-.+--|+.-++.-.+.+.++
T Consensus 117 ~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~ 193 (249)
T COG1134 117 LGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNEL 193 (249)
T ss_pred hCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHH
Confidence 444444333 33332233 47889999999999999999999999999999999999999999998888877765
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-26 Score=264.23 Aligned_cols=142 Identities=23% Similarity=0.371 Sum_probs=113.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
+++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+.+ .++|++|++. +. ..++.+++....+
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g--~iayv~Q~~~--l~-~~Ti~eNI~~g~~- 512 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG--RISFSPQTSW--IM-PGTIKDNIIFGLS- 512 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC--EEEEEeCCCc--cC-CccHHHHHHhccc-
Confidence 4689999999999999999999999999999999999999999999865 6999999863 22 2477887753221
Q ss_pred CCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 370 KPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.....+.+.+..+++..+ ....++.+|||||||||+||||++.+|+++||||||++||+.+.+.+.+.
T Consensus 513 ~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 513 YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 222333333333333211 23345789999999999999999999999999999999999999999874
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=213.62 Aligned_cols=150 Identities=20% Similarity=0.203 Sum_probs=102.2
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH-HHHHc--------------------CCCCCCceEEEcCceEEEEecc
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLL-KIIMG--------------------IISPTAGTRTVHRNLKFGYFSQ 347 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl-k~l~G--------------------~~~p~~G~i~~~~~~~ig~~~Q 347 (443)
+..+|+++||+|++||++||+|+||||||||+ .+|.. ...|..+.+. ....++..|
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 83 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIE---GLSPAIAID 83 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCcccccccc---CCCceEEec
Confidence 45799999999999999999999999999996 33321 1112211110 012233333
Q ss_pred CcccccccchhHH------HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEE
Q psy208 348 HHVDQLDMNLRCV------QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVL 419 (443)
Q Consensus 348 ~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiL 419 (443)
++...+.+..++. ..+...+.........+.|..+++.....++++.+||||||||++||++++.+| ++|||
T Consensus 84 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll 163 (226)
T cd03270 84 QKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL 163 (226)
T ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 3322222221211 111111121122333578899999644578999999999999999999999998 59999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.++..+.+.|.++
T Consensus 164 DEPt~gLD~~~~~~l~~~l~~~ 185 (226)
T cd03270 164 DEPSIGLHPRDNDRLIETLKRL 185 (226)
T ss_pred eCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-26 Score=224.26 Aligned_cols=162 Identities=30% Similarity=0.428 Sum_probs=131.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.+.+.||+|.|.+.+++|+++||++.+|+.++|+|++|+||||++++|..++++.+|.|.+++. ..||.
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 4889999999988899999999999999999999999999999999999999999999998652 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------hhhhhccC----CCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------GDLALQFV----GSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~~~~~~~~----~~LSgGekqRl~lA~al~~~p 414 (443)
+||+.... +.+...++...-+..+.+++...++.+.+. ++-.+..+ -.|||||||||+|||+++.+|
T Consensus 342 VPQDtvLF---NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 342 VPQDTVLF---NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred Ccccceeh---hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 99987432 335555555444555566655555444332 12223333 369999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|+|||.|+.||..+.+++...|+.
T Consensus 419 ~il~~deatsaldt~te~~iq~~l~~ 444 (497)
T COG5265 419 PILILDEATSALDTHTEQAIQAALRE 444 (497)
T ss_pred CEEEEehhhhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999998875
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=236.16 Aligned_cols=164 Identities=27% Similarity=0.397 Sum_probs=138.0
Q ss_pred eEEEeeeEEEeCCC----CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEEcC--------ce
Q psy208 276 ILQLSEVNFEYVPG----KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVHR--------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~----~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~~ 340 (443)
-+.++|++....+. +.+|++||..+++|+++||+||+||||||||++|+|.... .+|+|.+++ ..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~ 104 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK 104 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence 47788888877543 6799999999999999999999999999999999999875 789999976 23
Q ss_pred EEEEeccCcccccccchhHHHHHHH----hCCC-----CCHHHHHHHHhcCCCChhhhhccCC-----CCCHHHHHHHHH
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEA----AFPG-----KPQEEYRRQLGGFGVSGDLALQFVG-----SLSGGQKSRVAF 406 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~----~~~~-----~~~~~~~~~L~~~gl~~~~~~~~~~-----~LSgGekqRl~l 406 (443)
..||+.|+. .+.+..|+.+.+.- ..+. .....+.+++..+|+. ...+..++ .+|||||+||+|
T Consensus 105 ~s~yV~QdD--~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsi 181 (613)
T KOG0061|consen 105 ISGYVQQDD--VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-KCADTLIGNPGIRGLSGGERKRVSI 181 (613)
T ss_pred eeEEEcccc--cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-hhccceecCCCCCccccchhhHHHH
Confidence 589999973 56777888877642 2222 1234678899999997 56777776 499999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 407 ARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|.-++.+|.+|+|||||+|||..+...+.+.|+++.
T Consensus 182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA 217 (613)
T KOG0061|consen 182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLA 217 (613)
T ss_pred HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999998764
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=220.88 Aligned_cols=163 Identities=26% Similarity=0.391 Sum_probs=138.7
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
...|+++|++..-+++.+++++.||+|.+|+++.|.|+||||||||+|+|+|+.|--+|+|.......+-|+||.|. +
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY--~ 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPY--L 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCC--C
Confidence 46799999999988778999999999999999999999999999999999999999999998876777899999975 2
Q ss_pred ccchhHHHHHHHhCC--CCCHHHHHHHHhcCCCChhhhhc------cCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 354 DMNLRCVQLLEAAFP--GKPQEEYRRQLGGFGVSGDLALQ------FVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gl~~~~~~~------~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
+ ..+..+.+..-.. ..+++++.+.|.++|+. +..++ =-..||+||||||++||+++++|++++|||.|++
T Consensus 468 p-~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~-~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsA 545 (604)
T COG4178 468 P-QGTLREALCYPNAAPDFSDAELVAVLHKVGLG-DLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSA 545 (604)
T ss_pred C-CccHHHHHhCCCCCCCCChHHHHHHHHHcCcH-HHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhc
Confidence 2 3366666653211 25678899999999984 22221 1247999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcc
Q psy208 426 LDIETIEALGKAINK 440 (443)
Q Consensus 426 LD~~s~~~l~~~L~~ 440 (443)
||.++...+.+.|++
T Consensus 546 LDe~~e~~l~q~l~~ 560 (604)
T COG4178 546 LDEETEDRLYQLLKE 560 (604)
T ss_pred cChHHHHHHHHHHHh
Confidence 999999999999986
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=254.64 Aligned_cols=141 Identities=24% Similarity=0.307 Sum_probs=112.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+. ..++|++|++. + ...++.+++....+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~--~~i~yv~Q~~~--l-~~~Tv~enI~~~~~ 746 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE--RSIAYVPQQAW--I-MNATVRGNILFFDE 746 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC--CeEEEEeCCCc--c-CCCcHHHHHHcCCh
Confidence 3569999999999999999999999999999999999999999999875 36999999863 2 24577777653211
Q ss_pred CCCHHHHHHH---------HhcC--CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 369 GKPQEEYRRQ---------LGGF--GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 369 ~~~~~~~~~~---------L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
...+.+... +..+ |+. ....+++.+|||||||||+||||++.+|++|||||||++||+.+.+.+.+
T Consensus 747 -~~~~~~~~~~~~~~l~~~l~~l~~g~~-t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 747 -EDAARLADAVRVSQLEADLAQLGGGLE-TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred -hhHHHHHHHHHHhhhHHHHHHhhccch-HHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHH
Confidence 122222222 3333 443 24567789999999999999999999999999999999999998887765
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=254.37 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=119.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEEcCc----------eEEEEeccCccccccc
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII----SPTAGTRTVHRN----------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~~~----------~~ig~~~Q~~~~~l~~ 355 (443)
+++|+|+|+.+++|++++|+||||||||||||+|+|.. +|++|+|.+++. ..++|++|+. .+.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d--~~~~ 151 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETD--VHFP 151 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccc--ccCC
Confidence 56999999999999999999999999999999999986 579999988641 2489999974 2445
Q ss_pred chhHHHHHHH--h--CC-----CCCHH----H-HHHHHhcCCCChhhhhcc-----CCCCCHHHHHHHHHHHHhccCCCe
Q psy208 356 NLRCVQLLEA--A--FP-----GKPQE----E-YRRQLGGFGVSGDLALQF-----VGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 356 ~~~~~~~~~~--~--~~-----~~~~~----~-~~~~L~~~gl~~~~~~~~-----~~~LSgGekqRl~lA~al~~~p~l 416 (443)
..|+.+.+.- . .+ ....+ . ...+++.+|+. +..+++ +..|||||||||+||++|+.+|++
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLS-HTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcc-cccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 5677666532 1 11 11221 2 24578889986 344444 567999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||||+|||+.+...+.+.|+++
T Consensus 231 lllDEPTsgLD~~~~~~i~~~L~~l 255 (1394)
T TIGR00956 231 QCWDNATRGLDSATALEFIRALKTS 255 (1394)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 9999999999999999999999875
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-25 Score=204.71 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=101.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc---------eEEEcC--------ceEEEEeccCcccccccc
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG---------TRTVHR--------NLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G---------~i~~~~--------~~~ig~~~Q~~~~~l~~~ 356 (443)
++++|++.+| +++|+||||||||||+++|+|+++|..| .+.+.+ ...++|++|++..++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~-- 90 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYS-- 90 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCcee--
Confidence 6789999999 9999999999999999999999877643 232211 2468999998754311
Q ss_pred hhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHH
Q psy208 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~ 432 (443)
.....++.++++. .+..++++.+||||||||++||++++ .+|+++||||||++||+.++.
T Consensus 91 ------------~~~~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~ 154 (197)
T cd03278 91 ------------IISQGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVE 154 (197)
T ss_pred ------------EEehhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHH
Confidence 0012345556665 23467889999999999999999986 567999999999999999999
Q ss_pred HHHHHHccc
Q psy208 433 ALGKAINKY 441 (443)
Q Consensus 433 ~l~~~L~~~ 441 (443)
.+.+.|.++
T Consensus 155 ~l~~~l~~~ 163 (197)
T cd03278 155 RFARLLKEF 163 (197)
T ss_pred HHHHHHHHh
Confidence 999998875
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=240.87 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
..+.++|+++.|+..+.+++++||.|++||+.|+.|+|||||||++|+|+|..+|++|++.+.+. ..+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 56899999999964333999999999999999999999999999999999999999999988431 239
Q ss_pred EEeccCcccccccchhHHHHHH--HhCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLE--AAFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~--~~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||.||.. .+....|..+.+. ....+. -.+.+...++.+++. +..+++++.+|||+|+|+++|.|++.+|++
T Consensus 643 GyCPQ~d--~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~v 719 (885)
T KOG0059|consen 643 GYCPQFD--ALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSV 719 (885)
T ss_pred ccCCchh--hhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCE
Confidence 9999973 4566666666553 222222 234567889999997 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||+|+||.++..+.+++.+.
T Consensus 720 i~LDEPstGmDP~arr~lW~ii~~~ 744 (885)
T KOG0059|consen 720 ILLDEPSTGLDPKARRHLWDIIARL 744 (885)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=251.07 Aligned_cols=151 Identities=24% Similarity=0.271 Sum_probs=120.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcC--------ceEEEEeccCcccccccch
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHR--------NLKFGYFSQHHVDQLDMNL 357 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~ 357 (443)
.+.+|+|+|+.|++|++++|+||||||||||||+|+|.++|+ +|+|.+++ ...++|++|+.. +.+..
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~--~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDV--HVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEeccccc--CCCcC
Confidence 357999999999999999999999999999999999999998 99998864 235899999742 34455
Q ss_pred hHHHHHHH--hCC--C--------CCH----------------------------HHHHHHHhcCCCChh----hhhccC
Q psy208 358 RCVQLLEA--AFP--G--------KPQ----------------------------EEYRRQLGGFGVSGD----LALQFV 393 (443)
Q Consensus 358 ~~~~~~~~--~~~--~--------~~~----------------------------~~~~~~L~~~gl~~~----~~~~~~ 393 (443)
|+.+.+.- ... . ... ..+..+++.+|+... ..+..+
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 66665531 110 0 000 013457888998531 124567
Q ss_pred CCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..|||||||||+||++++.+|++|+|||||+|||..+...+.+.|+++
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l 382 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI 382 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999875
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=197.53 Aligned_cols=144 Identities=23% Similarity=0.321 Sum_probs=97.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc----------------CCCCCCc--------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----------------IISPTAG-------- 332 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G----------------~~~p~~G-------- 332 (443)
|+++|.. +|+ +..++.+++ |++++|+||||||||||+++|++ ++.+.+|
T Consensus 4 i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 5677763 674 456788876 78999999999999999999984 3444444
Q ss_pred eEEEcCc--------------eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh------------
Q psy208 333 TRTVHRN--------------LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG------------ 386 (443)
Q Consensus 333 ~i~~~~~--------------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~------------ 386 (443)
++.+... ..++|++++.. +... ..+.+++...+..+|+..
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~--l~~~------------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i 142 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYF--LDKK------------NVTKNDVMNLLESAGFSRSNPYYIVPQGKI 142 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEE--ECCe------------EcCHHHHHHHHHHcCCCCCCCcEEEEcCch
Confidence 2221110 01333333211 1110 012233333444433321
Q ss_pred -------hhhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 387 -------DLALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 387 -------~~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...++++..||||||||++||++++ .+|++|||||||++||+.+++.+.+.|.++
T Consensus 143 ~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~ 208 (243)
T cd03272 143 NSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208 (243)
T ss_pred HHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 1345788999999999999999996 368999999999999999999999998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-21 Score=203.64 Aligned_cols=263 Identities=21% Similarity=0.261 Sum_probs=164.1
Q ss_pred HHhCCCChhhhhccCCCCChHHHH-------------------------------HHHHHHHHHhhhCCCeEEEEecCHH
Q psy208 123 LAGLGFTPEMQKRATKHFSGGWRK-------------------------------MAIIWLENYLQNWPTTLLVVSHDRH 171 (443)
Q Consensus 123 L~~lgl~~~~~~~~~~~LSGGqr~-------------------------------~~i~wL~~~L~~~~~tviiVSHDr~ 171 (443)
|-.+||+-.-++|...+|||||.| +.+.-...-|++.+.|||||+||-+
T Consensus 465 L~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed 544 (935)
T COG0178 465 LVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED 544 (935)
T ss_pred HHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH
Confidence 445788866789999999999988 1222222335788999999999999
Q ss_pred HHhccCCcEEEEeC-----CeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 172 FLDSVPTDIFHLHS-----QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 172 fLd~v~~~i~~l~~-----g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
-+. .||+|++|-. |+=.+|.|++++.....+ ...- ++
T Consensus 545 ti~-~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~--------SlTG---------~Y-------------------- 586 (935)
T COG0178 545 TIR-AADHIIDIGPGAGEHGGEIVAEGTPEELLANPE--------SLTG---------QY-------------------- 586 (935)
T ss_pred HHh-hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc--------chhh---------Hh--------------------
Confidence 875 4899999953 344568999988743221 0000 00
Q ss_pred HhcCCCCCCCccccccccccCCCCCCC-CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHH----
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLS-PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLK---- 321 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk---- 321 (443)
|..-.. +..|..++.+ ...|++++.+. .=|+||+.+|+-|-.++|+|-+|||||||++
T Consensus 587 Lsg~~~-----------i~vP~~rr~~~~~~L~l~gA~~------nNLkni~v~iPLg~~t~VTGVSGSGKSTLIn~tL~ 649 (935)
T COG0178 587 LSGKKT-----------IEVPKKRRAPNGKWLELKGARR------NNLKNIDVEIPLGVFTCVTGVSGSGKSTLINDTLV 649 (935)
T ss_pred hcCCcc-----------cCCcccccCCCCCeEEEecccc------cCcccceeecccccEEEEEecCCCCHHHhHHHHHH
Confidence 000001 1111222221 22688888763 1489999999999999999999999999982
Q ss_pred -----HHHcC-CCCCCc-eEEEc-CceEEEEeccCcccc-----------------------------------------
Q psy208 322 -----IIMGI-ISPTAG-TRTVH-RNLKFGYFSQHHVDQ----------------------------------------- 352 (443)
Q Consensus 322 -----~l~G~-~~p~~G-~i~~~-~~~~ig~~~Q~~~~~----------------------------------------- 352 (443)
.|.+. ..|... .|.-. .-.++-+++|.|.-.
T Consensus 650 ~a~~~~l~~~~~~p~~~~~i~G~e~idkvI~IdQsPIGRTpRSNPATYtg~Fd~IR~lFA~tpeAK~rGyk~grFSFNvk 729 (935)
T COG0178 650 PALARHLNGTKEEPGPYKKIEGLEHIDKVIDIDQSPIGRTPRSNPATYTGVFDDIRELFAGTPEAKARGYKPGRFSFNVK 729 (935)
T ss_pred HHHHHHhccCCCCCCCcceeechhhcCeEEEecCCCCCCCCCCCccchhcchHHHHHHHhcChHHHHcCCCcccccccCC
Confidence 22231 112111 11000 000122222222100
Q ss_pred ---------------------------------------cc-----------cchhHHHHHHHhCCCC-CHHHHHHHHhc
Q psy208 353 ---------------------------------------LD-----------MNLRCVQLLEAAFPGK-PQEEYRRQLGG 381 (443)
Q Consensus 353 ---------------------------------------l~-----------~~~~~~~~~~~~~~~~-~~~~~~~~L~~ 381 (443)
+. .++++.+.. ..|... ...+..+.|-.
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn~EtLev~ykGK~IadVL~MTveEA~-~FF~~~p~I~rkLqtL~d 808 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYNRETLEVKYKGKNIADVLDMTVEEAL-EFFEAIPKIARKLQTLVD 808 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCcccccceEEEEECCccHHHHHhccHHHHH-HHHhcchHHHHHHHHHHH
Confidence 00 001111111 011111 12233455677
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+..-.+-++..+|||||.|||-||.-|.... -++||||||.||-+..++.|.+.|.+.
T Consensus 809 VGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL 871 (935)
T COG0178 809 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL 871 (935)
T ss_pred cCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 888776778999999999999999999998877 899999999999999999999988764
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=221.72 Aligned_cols=159 Identities=21% Similarity=0.343 Sum_probs=133.5
Q ss_pred CCCeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcc
Q psy208 273 SPPILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~ 350 (443)
+...++++|.++++++ ..+.|+||||+|++|+.+||+|+-|||||+||.+|.|..+..+|.+.+++. ++|++|.+
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--iaYv~Q~p- 591 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--VAYVPQQP- 591 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe--EEEecccc-
Confidence 4567999999999864 245999999999999999999999999999999999999999999998764 99999986
Q ss_pred cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh----------ccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL----------QFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
. -.+.|+.+++.-.. ..+++++++.++...+..|..- .+.-+||||||||++||||+.+++++++||
T Consensus 592 W--I~ngTvreNILFG~-~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 592 W--IQNGTVRENILFGS-PYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLD 668 (1381)
T ss_pred H--hhCCcHHHhhhcCc-cccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEc
Confidence 2 33567777775322 3467888899988888655332 345589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy208 421 EPTNHLDIETIEALGKA 437 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~ 437 (443)
.|.+++|...-..|.+-
T Consensus 669 DplSAVDahvg~~if~~ 685 (1381)
T KOG0054|consen 669 DPLSAVDAHVGKHIFEE 685 (1381)
T ss_pred CcchhhhHhhhHHHHHH
Confidence 99999999987777653
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-22 Score=187.55 Aligned_cols=151 Identities=21% Similarity=0.216 Sum_probs=104.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHHcCC-CCCCceEEEc----------CceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGAT-LESRICIVGDNGAGKTTLLKIIMGII-SPTAGTRTVH----------RNLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~-~Ge~i~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~----------~~~~ig 343 (443)
-|+++|+. +|.+ . .+++|+.. +|++++|+||||||||||+++|++.+ -+..+..... ....++
T Consensus 5 ~i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (213)
T cd03279 5 KLELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVS 79 (213)
T ss_pred EEEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEE
Confidence 37889988 7743 2 55666544 58899999999999999999999643 3333333211 123577
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHH--HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc---------
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA--------- 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~--------- 412 (443)
+.+|+...... ... ..+.+.+...+. +...++ ....++++..||+||+||++||++++.
T Consensus 80 ~~f~~~~~~~~-~~r--------~~gl~~~~~~~~~~l~~g~l-~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~ 149 (213)
T cd03279 80 FTFQLGGKKYR-VER--------SRGLDYDQFTRIVLLPQGEF-DRFLARPVSTLSGGETFLASLSLALALSEVLQNRGG 149 (213)
T ss_pred EEEEECCeEEE-EEE--------ecCCCHHHHHHhhhhhhcch-HHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccC
Confidence 77776532111 111 112333333322 233333 256678999999999999999999974
Q ss_pred -CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 -APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 -~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+.+.+.+.|.++
T Consensus 150 ~~~~~lllDEp~~~lD~~~~~~~~~~l~~~ 179 (213)
T cd03279 150 ARLEALFIDEGFGTLDPEALEAVATALELI 179 (213)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999988765
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-22 Score=193.63 Aligned_cols=158 Identities=18% Similarity=0.233 Sum_probs=109.8
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcC--------------ceE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHR--------------NLK 341 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~--------------~~~ 341 (443)
|.++|. ++|. ...++.++ ...+++|+||||||||||+++|++++.|.. |++.... ...
T Consensus 6 ~~~~~f-~~~~-~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~ 78 (251)
T cd03273 6 IILDGF-KSYA-TRTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKAS 78 (251)
T ss_pred EEEeCc-cccC-cCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEE
Confidence 556666 4563 22222222 256999999999999999999999998863 4544311 236
Q ss_pred EEEeccCccc-------ccccchhHHHHHH----H-h-CC--CCCHHHHHHHHhcCCCCh-------------------h
Q psy208 342 FGYFSQHHVD-------QLDMNLRCVQLLE----A-A-FP--GKPQEEYRRQLGGFGVSG-------------------D 387 (443)
Q Consensus 342 ig~~~Q~~~~-------~l~~~~~~~~~~~----~-~-~~--~~~~~~~~~~L~~~gl~~-------------------~ 387 (443)
+++++|++.. .+++..++...+. . . .. .....++..+|..+|+.. +
T Consensus 79 v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~ 158 (251)
T cd03273 79 VTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGG 158 (251)
T ss_pred EEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHH
Confidence 8888887421 1111222111110 0 0 11 123467888999999852 3
Q ss_pred hhhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 388 LALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 388 ~~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..++++.+||+|||||++||++++ .+|+++||||||++||+.+++.+.+.|.++
T Consensus 159 ~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~ 216 (251)
T cd03273 159 VWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH 216 (251)
T ss_pred hhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 456789999999999999999997 588999999999999999999999998765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=215.87 Aligned_cols=246 Identities=17% Similarity=0.193 Sum_probs=159.2
Q ss_pred HHhCCCChhhhhccCCCCChHHHH-------------------------------HHHHHHHHHhhhCCCeEEEEecCHH
Q psy208 123 LAGLGFTPEMQKRATKHFSGGWRK-------------------------------MAIIWLENYLQNWPTTLLVVSHDRH 171 (443)
Q Consensus 123 L~~lgl~~~~~~~~~~~LSGGqr~-------------------------------~~i~wL~~~L~~~~~tviiVSHDr~ 171 (443)
|..+||...-++|+..+|||||-| +.+.-..+-|++.+.|||||+||.+
T Consensus 1371 l~~vGL~YLtL~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~ 1450 (1809)
T PRK00635 1371 IDKVGLSYITLGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGS 1450 (1809)
T ss_pred HHhCCCCcccccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 445899877789999999999988 2333334446778999999999999
Q ss_pred HHhccCCcEEEEeC-----CeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 172 FLDSVPTDIFHLHS-----QRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 172 fLd~v~~~i~~l~~-----g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
.+.. ||+|++|=+ |+-.+|.|.|.+... . . . .
T Consensus 1451 ~i~~-AD~iidiGPgAG~~GG~iv~~G~~~~l~~--~---------~-----------------~--~------------ 1487 (1809)
T PRK00635 1451 LAEH-ADHLIHLGPGSGPQGGYLLSTSALKQSQP--D---------L-----------------H--N------------ 1487 (1809)
T ss_pred HHHh-CCEEEEeCCCccCCCCEEEecCCHHHHhh--h---------c-----------------c--c------------
Confidence 9865 899999952 344568999876520 0 0 0 0
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH--
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-- 324 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-- 324 (443)
.. .. .. .+.|++ +++. .=|+|++++|+-|-.++|+|.+|||||||++-+.
T Consensus 1488 -------~~--~~----~~--------~~~l~l-~a~~------nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~ 1539 (1809)
T PRK00635 1488 -------TR--SS----EE--------TPTLSV-SLSI------HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYK 1539 (1809)
T ss_pred -------cc--cc----cc--------CcEEEE-eccc------ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHH
Confidence 00 00 00 013666 5432 2489999999999999999999999999997443
Q ss_pred --------cCCCCCCceEEEcC-------------------------------------------c--------------
Q psy208 325 --------GIISPTAGTRTVHR-------------------------------------------N-------------- 339 (443)
Q Consensus 325 --------G~~~p~~G~i~~~~-------------------------------------------~-------------- 339 (443)
|.... +--|.++. |
T Consensus 1540 ~l~~~l~~g~~~~-~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~ 1618 (1809)
T PRK00635 1540 QACALIEKGPSVF-SEIIFLDSHPQISSQRSDISTYFDIAPSLRNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGY 1618 (1809)
T ss_pred HHHHHhccccccc-CcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCce
Confidence 22110 00111110 0
Q ss_pred --eEEEEeccCcc-------cccc----------------cchhHHHHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccC
Q psy208 340 --LKFGYFSQHHV-------DQLD----------------MNLRCVQLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFV 393 (443)
Q Consensus 340 --~~ig~~~Q~~~-------~~l~----------------~~~~~~~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~ 393 (443)
..+.|++.-.. ..+. .++++-+.+ ..|... .-....+.|..+|+..-.+.++.
T Consensus 1619 i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ea~-~~F~~~~~i~~~L~~L~~vGLgYl~LGq~~ 1697 (1809)
T PRK00635 1619 QWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEEVA-ETFPFLKKIQKPLQALIDNGLGYLPLGQNL 1697 (1809)
T ss_pred EEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHHHH-HHhhccHHHHHHHHHHHHcCCCeeeCCCcC
Confidence 00111111000 0000 001111111 112111 12334567888999777778999
Q ss_pred CCCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 394 GSLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 394 ~~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|||||.||+-||.-|..+ +.++||||||+||++...+.|.+.|.+.
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999875 7899999999999999999999997654
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-21 Score=187.42 Aligned_cols=151 Identities=21% Similarity=0.241 Sum_probs=102.0
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-----c---C--CCCCCceEEEcC--ceEEEEeccCcccc-----c
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-----G---I--ISPTAGTRTVHR--NLKFGYFSQHHVDQ-----L 353 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-----G---~--~~p~~G~i~~~~--~~~ig~~~Q~~~~~-----l 353 (443)
.-|+|+|++|+.|..++|+|++|||||||++.+. . . ..|..+....+. -..+-+++|.|... .
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3689999999999999999999999999998662 1 1 113322221110 11234455543210 0
Q ss_pred ---------------------------------------ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCC
Q psy208 354 ---------------------------------------DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394 (443)
Q Consensus 354 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~ 394 (443)
....++.+.+.............+.|..+|+.....++++.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~ 168 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPAT 168 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccc
Confidence 00111111111000000123456678889996545789999
Q ss_pred CCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 395 SLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||+||++||++|+.+ |+++||||||++||+..++.+.+.|.++
T Consensus 169 ~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 169 TLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999996 7999999999999999999999998765
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=194.07 Aligned_cols=163 Identities=24% Similarity=0.339 Sum_probs=127.3
Q ss_pred CCeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce---EEEEeccCc
Q psy208 274 PPILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---KFGYFSQHH 349 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---~ig~~~Q~~ 349 (443)
..+|++++|++.=|+ +..+++|+||+|..|+-+.|+||||||||+|+|+|+|+.+..+|++...... .+-|+||.|
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrP 510 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRP 510 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCC
Confidence 468999999999776 5668889999999999999999999999999999999999999999875433 388999988
Q ss_pred ccccccchhHHHHHHH-------hCCCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHhc
Q psy208 350 VDQLDMNLRCVQLLEA-------AFPGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al~ 411 (443)
...+ .|..+.+.. .....+++++...|+.+++.. .+. .=...||+||+||+++||.+.
T Consensus 511 Ymt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~h-l~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy 586 (659)
T KOG0060|consen 511 YMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGH-LLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFY 586 (659)
T ss_pred Cccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhh-HHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHh
Confidence 5221 133333211 011234566777776665531 111 113479999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|++-||||-|+++|.+...++.+.+++
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~ 615 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCRE 615 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHH
Confidence 99999999999999999999999888765
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=180.72 Aligned_cols=131 Identities=27% Similarity=0.335 Sum_probs=95.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHH----cCCCCCCceEEEc--------CceEEEEeccCc-cccccc--chhHH
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIM----GIISPTAGTRTVH--------RNLKFGYFSQHH-VDQLDM--NLRCV 360 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~----G~~~p~~G~i~~~--------~~~~ig~~~Q~~-~~~l~~--~~~~~ 360 (443)
.++++.+| +++|+||||||||||+++|. |..+|+.|.+... ....+++.+|++ ...+.. ..+++
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 34566677 99999999999999999995 9999988754311 134688888875 222221 12444
Q ss_pred HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH------HHHHHHhccCCCeEEEeCCCCCCCHHHHH-H
Q psy208 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR------VAFARMCMAAPNFLVLDEPTNHLDIETIE-A 433 (443)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR------l~lA~al~~~p~lLiLDEPTn~LD~~s~~-~ 433 (443)
+.+... ...++... .++++..||+||+|| ++||++++.+|+++||||||++||+.+++ .
T Consensus 95 ~~~~~~----~~~~~~~~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 95 ENVIFC----HQGESNWP----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred hceeee----chHHHHHH----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 433211 12222222 267889999999996 78999999999999999999999999999 9
Q ss_pred HHHHHccc
Q psy208 434 LGKAINKY 441 (443)
Q Consensus 434 l~~~L~~~ 441 (443)
+.+.|.++
T Consensus 161 l~~~l~~~ 168 (204)
T cd03240 161 LAEIIEER 168 (204)
T ss_pred HHHHHHHH
Confidence 99988764
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-22 Score=191.34 Aligned_cols=153 Identities=21% Similarity=0.278 Sum_probs=99.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~ 356 (443)
|+++|.. +|+ +..++++++| ++++|+||||||||||+++|+-..-.+.... ...+++|+++.... .+.
T Consensus 6 l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~---~~~~i~~~~~~~~~--~~~ 73 (212)
T cd03274 6 LVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM---RQKKLSDLIHNSAG--HPN 73 (212)
T ss_pred EEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh---hhhhHHHHhcCCCC--CCC
Confidence 7788886 785 5679999987 7999999999999999999983211110000 11234555544211 110
Q ss_pred hhH------------HHHHHH-hCCCCCHH---HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----CCCe
Q psy208 357 LRC------------VQLLEA-AFPGKPQE---EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----APNF 416 (443)
Q Consensus 357 ~~~------------~~~~~~-~~~~~~~~---~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~----~p~l 416 (443)
.+. ...+.. ........ ....++..+++. +..++++..||+|||||++||++++. +|++
T Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 74 LDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMP-KKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred CceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccc-cccccchhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 000 001100 00000000 013344566664 45677899999999999999999963 5899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+||||||++||+.++..+.+.|.++.
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~ 178 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERT 178 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-21 Score=190.77 Aligned_cols=160 Identities=29% Similarity=0.420 Sum_probs=121.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
-|.++|.+++-. ++.+|-+.||.|-.|-++|||||||-||||||+.|+.--- .+.+++.+-|+.|+....-..
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral------aIPpnIDvLlCEQEvvad~t~ 336 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL------AIPPNIDVLLCEQEVVADSTS 336 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhc------cCCCCCceEeeeeeeeecCcH
Confidence 388999999874 5789999999999999999999999999999999986321 112233334444432110000
Q ss_pred -----------------------------chhH-------HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHH
Q psy208 356 -----------------------------NLRC-------VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG 399 (443)
Q Consensus 356 -----------------------------~~~~-------~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgG 399 (443)
+.++ ++.+...-....+.+++++|+.+||+.+..++|...+|||
T Consensus 337 Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGG 416 (807)
T KOG0066|consen 337 AIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGG 416 (807)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCc
Confidence 0011 1111111112235568899999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.|.||+|||||...|-+|.|||||||||...+-||-+.|..|+
T Consensus 417 WRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk 459 (807)
T KOG0066|consen 417 WRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK 459 (807)
T ss_pred eeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh
Confidence 9999999999999999999999999999999999999998774
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=181.37 Aligned_cols=157 Identities=22% Similarity=0.251 Sum_probs=116.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.-|+++|+.|.|.+...-+.+||++|++||++-|+|.||||||||+++|+|+++|++|+|.++++.. +.+ +++
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV----~~e---~le 393 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV----SAE---QLE 393 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC----CCC---CHH
Confidence 3599999999997544667899999999999999999999999999999999999999999876431 111 111
Q ss_pred cchhHHHH----------HHHhCCCCCHHHHHHHHhcCCCChh--hhh--ccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 355 MNLRCVQL----------LEAAFPGKPQEEYRRQLGGFGVSGD--LAL--QFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 355 ~~~~~~~~----------~~~~~~~~~~~~~~~~L~~~gl~~~--~~~--~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
.....+.. +...-...+++.+..+|.++.+... ..+ -..-.||.|||+|+++..|++.+.+|++||
T Consensus 394 dYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~D 473 (546)
T COG4615 394 DYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLD 473 (546)
T ss_pred HHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEee
Confidence 11111111 1111111345667777776654211 111 234579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q psy208 421 EPTNHLDIETIEALGKAI 438 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L 438 (443)
|=-+.-||.-+.++.+.+
T Consensus 474 EWAADQDPaFRR~FY~~l 491 (546)
T COG4615 474 EWAADQDPAFRREFYQVL 491 (546)
T ss_pred hhhccCChHHHHHHHHHH
Confidence 999999999999887655
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=182.20 Aligned_cols=157 Identities=20% Similarity=0.265 Sum_probs=101.6
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------------------
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------------------ 338 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------------ 338 (443)
|+++|. ++|.+ ... |...++ +++|+|||||||||||.+|++.+.+..|.+....
T Consensus 4 i~l~nf-~~~~~-~~~-----~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~ 75 (247)
T cd03275 4 LELENF-KSYKG-RHV-----IGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSA 75 (247)
T ss_pred EEEECc-cccCC-Cee-----ecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceE
Confidence 677776 46642 222 222333 8999999999999999999999987766653211
Q ss_pred ceEEEEeccCcccccccchhHHHHHHH-h--CCCCCHHHHHHHHhcCCCChh---------------------hhhccCC
Q psy208 339 NLKFGYFSQHHVDQLDMNLRCVQLLEA-A--FPGKPQEEYRRQLGGFGVSGD---------------------LALQFVG 394 (443)
Q Consensus 339 ~~~ig~~~Q~~~~~l~~~~~~~~~~~~-~--~~~~~~~~~~~~L~~~gl~~~---------------------~~~~~~~ 394 (443)
...+.|..+++..... .......... . .......++.+++..+|+..+ ..++++.
T Consensus 76 ~v~~~f~~~~~~~~~~-~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~ 154 (247)
T cd03275 76 YVTAVYEDDDGEEKTF-RRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMD 154 (247)
T ss_pred EEEEEEEcCCCcEEEE-EEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHH
Confidence 1223343333211100 0000000000 0 011235566777777777421 2234568
Q ss_pred CCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 395 SLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 395 ~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
.||+|||||++||++++. +|+++||||||++||+.++..+.+.|.++.
T Consensus 155 ~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~ 206 (247)
T cd03275 155 NLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQA 206 (247)
T ss_pred HcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhc
Confidence 999999999999999986 489999999999999999999999988763
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-20 Score=188.71 Aligned_cols=163 Identities=21% Similarity=0.270 Sum_probs=129.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc--
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL-- 353 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l-- 353 (443)
-|.++|+-+--+.+..++..++|.|.+|-.+.|+||||||||+|+|+|.|+.|...|.....+..++-|+||.|.-..
T Consensus 481 gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gt 560 (728)
T KOG0064|consen 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGT 560 (728)
T ss_pred ceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCc
Confidence 488999988877777899999999999999999999999999999999999999999988887778999999885221
Q ss_pred -----ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhcc---------CCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 354 -----DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQF---------VGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 354 -----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~---------~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
-...+..+... .+..+++...+|..+.+. ..+.+- -..||||||||+++||++.++|..-+|
T Consensus 561 lRDQIIYPdS~e~~~~---kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalL 636 (728)
T KOG0064|consen 561 LRDQIIYPDSSEQMKR---KGYTDQDLEAILDIVHLE-HILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALL 636 (728)
T ss_pred ccceeecCCcHHHHHh---cCCCHHHHHHHHHHhhHH-HHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhh
Confidence 11112222221 234566777776655542 111111 136999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHcccc
Q psy208 420 DEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
||-||+..++....+.++.+++.
T Consensus 637 DEcTsAvsidvE~~i~~~ak~~g 659 (728)
T KOG0064|consen 637 DECTSAVSIDVEGKIFQAAKDAG 659 (728)
T ss_pred hhhhcccccchHHHHHHHHHhcC
Confidence 99999999999999999988763
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-20 Score=171.66 Aligned_cols=134 Identities=22% Similarity=0.214 Sum_probs=93.8
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-----ce-----EEEc-CceEEEEeccCcccccccchhHH
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-----GT-----RTVH-RNLKFGYFSQHHVDQLDMNLRCV 360 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-----G~-----i~~~-~~~~ig~~~Q~~~~~l~~~~~~~ 360 (443)
.++++++++.+| +.+|+||||||||||+..|.-.+.... |. +..+ ....+.+.+++.. +...
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~--~~~~---- 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQG--LDAN---- 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCC--ccCC----
Confidence 346677787776 779999999999999999975433221 11 0000 1234556665532 1110
Q ss_pred HHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
.........+.+++.. .+..++++.+||+|||||++||+++ +.+|+++||||||++||+.++..+.+
T Consensus 84 -----~~~~~~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~ 154 (198)
T cd03276 84 -----PLCVLSQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTD 154 (198)
T ss_pred -----cCCHHHHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHH
Confidence 0111123455666665 3456789999999999999999999 68999999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 155 ~l~~~ 159 (198)
T cd03276 155 LLVKE 159 (198)
T ss_pred HHHHH
Confidence 88664
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=163.52 Aligned_cols=163 Identities=25% Similarity=0.326 Sum_probs=120.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~i 342 (443)
.-.|+++++.|+|+...|++-|+|++++.|++..++|.||||||||||+|+|-.-.-.|.|.+.+.. ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 3469999999999877899999999999999999999999999999999999887777887764321 23
Q ss_pred EEeccCcc--------cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 343 GYFSQHHV--------DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 343 g~~~Q~~~--------~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.|+--+-. -.+..+.++...+... .+...++-..++..+.++ ..-+.+.+|-|||+||.||.-|+.+=
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mifgV-~g~dp~Rre~LI~iLDId---l~WRmHkvSDGqrRRVQicMGLL~Pf 166 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMIFGV-GGDDPERREKLIDILDID---LRWRMHKVSDGQRRRVQICMGLLKPF 166 (291)
T ss_pred eEecccccccccccccccccccccHHHHHhhc-cCCChhHhhhhhhheecc---ceEEEeeccccchhhhHHHHhcccce
Confidence 33332210 0011223333333221 222233334444444442 34567889999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++|+|||.|-.||.-++..|.+.|+.
T Consensus 167 kVLLLDEVTVDLDVlARadLLeFlke 192 (291)
T KOG2355|consen 167 KVLLLDEVTVDLDVLARADLLEFLKE 192 (291)
T ss_pred eEEEeeeeEeehHHHHHHHHHHHHHH
Confidence 99999999999999999999998864
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-20 Score=165.48 Aligned_cols=157 Identities=27% Similarity=0.403 Sum_probs=118.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~ 344 (443)
++.++||+.+- -|-.+|.++..|+++-+||||||||||||-.++|++ |-+|+|.+.+.. .-+|
T Consensus 3 l~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAY 76 (248)
T COG4138 3 LMQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76 (248)
T ss_pred eeeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHH
Confidence 57888888642 466789999999999999999999999999999986 678999886421 2357
Q ss_pred eccCcccccccchhHHHHHHHhCCCCC-HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc-----CC--Ce
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKP-QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA-----AP--NF 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~-----~p--~l 416 (443)
+.|.... .....++.++.-..|... ...+..+...+++. +...+.++.|||||-|||-||..++. || ++
T Consensus 77 LsQqq~p--~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~L 153 (248)
T COG4138 77 LSQQQTP--PFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQL 153 (248)
T ss_pred HhhccCC--cchhhhhhhhhhcCchHHHHHHHHHHHhhhccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCcccee
Confidence 7765422 222344444443333322 23455566677775 67889999999999999999988765 44 69
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||.|+||+.....|-..|.++
T Consensus 154 LllDEP~~~LDvAQ~~aLdrll~~~ 178 (248)
T COG4138 154 LLLDEPMNSLDVAQQSALDRLLSAL 178 (248)
T ss_pred EEecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999988888777655
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-19 Score=163.69 Aligned_cols=169 Identities=21% Similarity=0.299 Sum_probs=134.0
Q ss_pred CeEEEeeeEEEeCC---CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC----CceEEEcC---------
Q psy208 275 PILQLSEVNFEYVP---GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT----AGTRTVHR--------- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~---~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~----~G~i~~~~--------- 338 (443)
++|.++|++..+.. ...+++++|+++..||+-|+||.+|||||-..|.|+|..+-. .-...++.
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 46888999988742 246899999999999999999999999999999999986531 11111110
Q ss_pred ------ceEEEEeccCcccccccchhHHHHHHHhCC------------CCCHHHHHHHHhcCCCCh--hhhhccCCCCCH
Q psy208 339 ------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFP------------GKPQEEYRRQLGGFGVSG--DLALQFVGSLSG 398 (443)
Q Consensus 339 ------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~~~~L~~~gl~~--~~~~~~~~~LSg 398 (443)
...+++++|+|..-+++..++-..+....+ +....++.++|.++|+.. +....++.+|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 124788999998888887776554433222 234567889999999953 456678999999
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccccC
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYTF 443 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~~ 443 (443)
||-|+|.||.|++.+|.+||.|||||.+|+.++.++...|....|
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQ 206 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQ 206 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999877643
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=173.68 Aligned_cols=153 Identities=25% Similarity=0.383 Sum_probs=113.9
Q ss_pred EEeCCCCceeeeeeEEEeCCC-----EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh
Q psy208 284 FEYVPGKPILTNVCLGATLES-----RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 284 ~~y~~~~~il~~vsl~i~~Ge-----~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~ 358 (443)
++|++-+..+.++.|.|..|+ ++..+|.||.|||||+++++|.++|+.|.= -+...++|-||.... ....+
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e--~p~lnVSykpqkisp--K~~~t 418 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGE--IPVLNVSYKPQKISP--KREGT 418 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCc--ccccceeccccccCc--cccch
Confidence 567665667788888888775 789999999999999999999999998742 123568888886432 22334
Q ss_pred HHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 359 CVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 359 ~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+...+.....+ ...+-+...+..+.+. ...++.+..|||||.||++||.+|-..+++++.|||.+.||.+.+-.-..
T Consensus 419 vR~ll~~kIr~ay~~pqF~~dvmkpL~ie-~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask 497 (592)
T KOG0063|consen 419 VRQLLHTKIRDAYMHPQFVNDVMKPLQIE-NIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK 497 (592)
T ss_pred HHHHHHHHhHhhhcCHHHHHhhhhhhhHH-HHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence 44443322111 2344455566666654 56788899999999999999999999999999999999999998876666
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.+++|
T Consensus 498 vikRf 502 (592)
T KOG0063|consen 498 VIKRF 502 (592)
T ss_pred HHHHH
Confidence 55543
|
|
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=172.67 Aligned_cols=147 Identities=27% Similarity=0.384 Sum_probs=119.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--------CCCCCceEEEcCceEEEEeccCcccccccchhHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--------ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--------~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
.+++|+||+|++||+++|+|++||||||||++|+|. ++|++|.|.+..+..-+.+|......+. ..++.+.
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~-~~tileh 475 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFG-EVTILEH 475 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccC-chhHHHH
Confidence 589999999999999999999999999999999996 5799999988766644556655433344 5567777
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhh-hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLA-LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~-~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.+... +...+..+|...|++...+ .++++.||.|||-|+.||+++...|++++.||--+|||..+...+..-|.+
T Consensus 476 l~s~tG--D~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkise 552 (593)
T COG2401 476 LRSKTG--DLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISE 552 (593)
T ss_pred HhhccC--chhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence 765433 2334678899999865433 467899999999999999999999999999999999999999988876654
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=191.45 Aligned_cols=163 Identities=26% Similarity=0.366 Sum_probs=121.9
Q ss_pred eEEEeeeEEEe---CCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCceEEEcC--------ceEE
Q psy208 276 ILQLSEVNFEY---VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS--PTAGTRTVHR--------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y---~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~~--------~~~i 342 (443)
+...+|+.+.. ++.+.+|+||+=-+.||-.+||+|+|||||||||++|+|-.. ..+|.|.+.+ ...+
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~ 866 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVS 866 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhcccc
Confidence 45556666544 134679999999999999999999999999999999999742 2345666654 2358
Q ss_pred EEeccCcccccccchhHHHHHH--Hh--CC-CCC---H-HHHHHHHhcCCCChhhhhccCCC----CCHHHHHHHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLE--AA--FP-GKP---Q-EEYRRQLGGFGVSGDLALQFVGS----LSGGQKSRVAFARM 409 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~--~~--~~-~~~---~-~~~~~~L~~~gl~~~~~~~~~~~----LSgGekqRl~lA~a 409 (443)
||+.|+..+. +..|+.+-+. +. .+ ..+ + +-++++++.+++. +..+.-++. ||..||+||.||--
T Consensus 867 GYvqQ~DiH~--~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVE 943 (1391)
T KOG0065|consen 867 GYVEQQDIHS--PELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK-EYADALVGLPGSGLSTEQRKRLTIGVE 943 (1391)
T ss_pred ceeecccccC--cccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCch-hhhhhhccCCCCCCCHHHhceeeEEEE
Confidence 9999975432 4566666553 11 11 111 1 3456777777775 344544554 99999999999999
Q ss_pred hccCC-CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAP-NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p-~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+| .||+|||||||||..+...+++++++.
T Consensus 944 LvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl 976 (1391)
T KOG0065|consen 944 LVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976 (1391)
T ss_pred EecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence 99999 899999999999999999999998864
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-18 Score=170.28 Aligned_cols=155 Identities=25% Similarity=0.315 Sum_probs=105.1
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-----------------------
Q psy208 281 EVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH----------------------- 337 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~----------------------- 337 (443)
++..+|+.+..-|..+= ...+|.++||+|+||.||||-+|+|+|.+.|.=|...-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45677854322222211 245899999999999999999999999999987753210
Q ss_pred -CceEEEEeccCcccccc--cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 338 -RNLKFGYFSQHHVDQLD--MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 338 -~~~~ig~~~Q~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++.++..-+|-- +.++ ...++.+.+.... ......++.+.+++. ..+++.+++|||||-||++||.++++++
T Consensus 158 ~g~~r~v~K~QYV-d~iPk~~KG~v~elLk~~d---e~g~~devve~l~L~-nvl~r~v~~LSGGELQr~aIaa~l~rdA 232 (591)
T COG1245 158 EGELRAVHKPQYV-DLIPKVVKGKVGELLKKVD---ERGKFDEVVERLGLE-NVLDRDVSELSGGELQRVAIAAALLRDA 232 (591)
T ss_pred cCCcceecchHHH-HHHHHHhcchHHHHHHhhh---hcCcHHHHHHHhcch-hhhhhhhhhcCchHHHHHHHHHHHhccC
Confidence 111222222210 0000 1112222222110 112355677788886 5789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++++||||+.||+..+-...+.++++
T Consensus 233 DvY~FDEpsSyLDi~qRl~~ar~Irel 259 (591)
T COG1245 233 DVYFFDEPSSYLDIRQRLNAARVIREL 259 (591)
T ss_pred CEEEEcCCcccccHHHHHHHHHHHHHH
Confidence 999999999999999998888887764
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-18 Score=159.06 Aligned_cols=110 Identities=20% Similarity=0.215 Sum_probs=81.7
Q ss_pred eeeeeeEEEeCCC-EEEEECCCCCcHHHHHHHHH--------cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHH
Q psy208 292 ILTNVCLGATLES-RICIVGDNGAGKTTLLKIIM--------GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 292 il~~vsl~i~~Ge-~i~iiG~NGsGKSTLlk~l~--------G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
-+-++||++.+|+ +++|+||||||||||||+|+ |...|... ...++|++|... .
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~------~~~~~~~~~~~~-~---------- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE------GSSLPVFENIFA-D---------- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc------cccCcCccEEEE-e----------
Confidence 3557899999996 69999999999999999998 65555432 223555555421 1
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH-HHc
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK-AIN 439 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~-~L~ 439 (443)
++.. +.....++.+|+|++|++.+++++ .+|+++|+||||++||+.....+.. .+.
T Consensus 79 -------------------lg~~-~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~ 135 (200)
T cd03280 79 -------------------IGDE-QSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE 135 (200)
T ss_pred -------------------cCch-hhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 1111 223455678999999999999874 8999999999999999999887753 443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-16 Score=148.86 Aligned_cols=144 Identities=14% Similarity=0.064 Sum_probs=82.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce----------EEEcC-ceEEEEeccCcccccccch----
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------RTVHR-NLKFGYFSQHHVDQLDMNL---- 357 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~----------i~~~~-~~~ig~~~Q~~~~~l~~~~---- 357 (443)
++++.+.+.+| ..+|+|+|||||||||..|.-.+-..... +..+. ...+-.........+..+.
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~n~~~~ 92 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPGNIQVDNLCQF 92 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCCccccCCceEE
Confidence 35556666554 67999999999999999987655221110 11111 0111111111000000000
Q ss_pred hHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHH
Q psy208 358 RCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEA 433 (443)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~ 433 (443)
..-+.... +...... +.+..+.......+.++.+||+||||++.+|.++ +.+|+++|+||||++||+.++..
T Consensus 93 ~~q~~~~~-~~~~~~~---e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~ 168 (213)
T cd03277 93 LPQDRVGE-FAKLSPI---ELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERK 168 (213)
T ss_pred EchHHHHH-HHhCChH---hHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHH
Confidence 00000000 0111121 2233333322334667899999999998877554 58999999999999999999999
Q ss_pred HHHHHccc
Q psy208 434 LGKAINKY 441 (443)
Q Consensus 434 l~~~L~~~ 441 (443)
+.+.|.++
T Consensus 169 i~~~l~~~ 176 (213)
T cd03277 169 VFDMLVET 176 (213)
T ss_pred HHHHHHHH
Confidence 99988765
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-16 Score=141.51 Aligned_cols=112 Identities=25% Similarity=0.231 Sum_probs=78.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
...++.+.++.+++|+|||||||||+++.+....-...|.+......+.|+.... .....
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~------------------ 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA--VSAEL------------------ 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee--eEEEE------------------
Confidence 3345555566799999999999999999988766665554433221112211100 00000
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+ .....||+||++|+.||+++.. +|+++|||||++++|+.....+.++|.++
T Consensus 72 ----------i------~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~ 127 (162)
T cd03227 72 ----------I------FTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127 (162)
T ss_pred ----------e------hheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0 0012399999999999999986 78999999999999999999999988765
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.2e-15 Score=138.46 Aligned_cols=46 Identities=35% Similarity=0.429 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+||+||++||++++ .+|+++|+||||++||+.....+.+.|.++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~ 144 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM 144 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999985 699999999999999999999999988764
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.59 E-value=1e-15 Score=143.47 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGI-ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
..++++.+|++++|+||||||||||||+|++. +.+..|.........++|++|... .
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~-~--------------------- 78 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFT-R--------------------- 78 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEE-E---------------------
Confidence 34667779999999999999999999999943 334445433333334444333211 1
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
++.. +......+.+|+++++ +..+..++.+|+++||||||+++|+.....+..
T Consensus 79 --------~~~~-d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~ 131 (202)
T cd03243 79 --------IGAE-DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY 131 (202)
T ss_pred --------ecCc-ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1110 1122344567777665 666677889999999999999999988776644
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=139.47 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhcc----CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 393 VGSLSGGQKSRVAFARMCMA----APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 393 ~~~LSgGekqRl~lA~al~~----~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
...|||||+||++||++++. +|+++||||||++||+..+..+.+.|.++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~ 220 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL 220 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 34599999999999986543 99999999999999999999999998765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=149.96 Aligned_cols=130 Identities=21% Similarity=0.269 Sum_probs=89.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCC-CEEEEECCCCCcHHHHHHHHHcC-CCCCCc-eEEEcCceEEEEeccCcccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLE-SRICIVGDNGAGKTTLLKIIMGI-ISPTAG-TRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~G-e~i~iiG~NGsGKSTLlk~l~G~-~~p~~G-~i~~~~~~~ig~~~Q~~~~~ 352 (443)
++.++++..-+-. ..-+-.+|+.+.++ ++++|+||||+|||||||+|+|. +.+..| .|.......++|++|... .
T Consensus 295 ~i~l~~~rhPll~-~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~-~ 372 (771)
T TIGR01069 295 KIILENARHPLLK-EPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFA-D 372 (771)
T ss_pred CEEEccccCceec-CCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheee-e
Confidence 5777766542211 11123478899887 89999999999999999999998 566666 333332334555444321 0
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
+ +. .+.....++++|+|+++++.+++.+ .+|.++|||||++|+|+....
T Consensus 373 i-----------------------------~~-~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 373 I-----------------------------GD-EQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred c-----------------------------Ch-HhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 1 00 0122244678999999999988776 789999999999999999999
Q ss_pred HHHHHH
Q psy208 433 ALGKAI 438 (443)
Q Consensus 433 ~l~~~L 438 (443)
.|...+
T Consensus 422 ala~ai 427 (771)
T TIGR01069 422 ALAISI 427 (771)
T ss_pred HHHHHH
Confidence 885433
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-14 Score=135.09 Aligned_cols=116 Identities=19% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEE-EeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFG-YFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig-~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
...+.+|+++++.++++++|+||||+|||||+++|+-. .+ -..+| |+|.+.. .+.
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~--la~~g~~vpa~~~-~~~------------- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL--MAQIGCFVPCDSA-DIP------------- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH--HHHhCCCcCcccE-EEe-------------
Confidence 35689999999999999999999999999999999721 00 01122 3333211 000
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeCC---CCCCCHHHHHHHH-HHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDEP---TNHLDIETIEALG-KAI 438 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDEP---Tn~LD~~s~~~l~-~~L 438 (443)
.+..++..+++... ....+|.|+++++.+++++ +.+|+++||||| ||+||+.+..+.. +.|
T Consensus 72 ------~~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l 138 (222)
T cd03285 72 ------IVDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYI 138 (222)
T ss_pred ------ccceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHH
Confidence 11234455665422 2568999999999999999 899999999999 9999999886544 444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=132.33 Aligned_cols=143 Identities=21% Similarity=0.227 Sum_probs=96.3
Q ss_pred HHHHHHccccccCCCCCcceEEecC--------CceEEEEecccCCC---CchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 20 FYCKALTLHLHLEGGMVSGQLRIPS--------HISVLHVEQEVVGD---DTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~G~i~~~~--------~~~i~~l~Q~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
+|+|.+-|.+.| .+|+|.+.+ +.+|||+||....+ +.||.+.|..+........+
T Consensus 45 TLlK~iLGll~p----~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~---------- 110 (254)
T COG1121 45 TLLKAILGLLKP----SSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR---------- 110 (254)
T ss_pred HHHHHHhCCCcC----CcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc----------
Confidence 344444444444 559998532 36899999976443 45777777654211111100
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
+ ....+ .+++.++|+.+|+.+ ..+|++.+|||||+|
T Consensus 111 ----------~----------~~~~d-~~~v~~aL~~Vgm~~-~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~ 168 (254)
T COG1121 111 ----------R----------LNKKD-KEKVDEALERVGMED-LRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFT 168 (254)
T ss_pred ----------c----------ccHHH-HHHHHHHHHHcCchh-hhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcc
Confidence 0 00011 357999999999985 579999999999999
Q ss_pred -------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 147 -------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 147 -------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
..+.-|.+.|++-+.|||+||||...+.+.||+|+.|+..-+ +.|+.++...
T Consensus 169 gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~--~~G~~~~~~~ 227 (254)
T COG1121 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI--ASGPPEEVLT 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE--eccChhhccC
Confidence 344445555655588999999999999999999999965543 5688776643
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=131.74 Aligned_cols=157 Identities=18% Similarity=0.242 Sum_probs=116.0
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecCC-c-----------eEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPSH-I-----------SVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~~-~-----------~i~~l~ 52 (443)
.+.|+...||..-..|.|++.+.. .| .+++|+|.+.+. + ++|++.
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 356888888888888888887776 11 258899988651 1 478999
Q ss_pred cccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|+... +..|+++-+.-+.-.+ -.....+++.++.+.|..+|+.+.
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v----------------------------------~~~~k~eA~~~A~~lL~~VGL~~k 129 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV----------------------------------KKLSKAEAREKALELLEKVGLADK 129 (240)
T ss_pred ccccccccchHHHHHHhhhHHH----------------------------------cCCCHHHHHHHHHHHHHHcCchhh
Confidence 99864 6677776665432111 112223456789999999999864
Q ss_pred hhhccCCCCChHHHH-----------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK-----------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.+..+++||||||| ..+.-+..-|.+-+.|.|+|+|+..|..+|||||+.
T Consensus 130 -a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviF 208 (240)
T COG1126 130 -ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIF 208 (240)
T ss_pred -hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEE
Confidence 58899999999999 233344455667789999999999999999999999
Q ss_pred EeCCeeEEEcCChhHHHH
Q psy208 183 LHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~ 200 (443)
+++|.+..- |..+++..
T Consensus 209 md~G~iie~-g~p~~~f~ 225 (240)
T COG1126 209 MDQGKIIEE-GPPEEFFD 225 (240)
T ss_pred eeCCEEEEe-cCHHHHhc
Confidence 999988764 57666543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=134.92 Aligned_cols=155 Identities=17% Similarity=0.237 Sum_probs=112.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc-----------CC------------CCCcceEEecC-----------CceEEEEec
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL-----------EG------------GMVSGQLRIPS-----------HISVLHVEQ 53 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------~~~~G~i~~~~-----------~~~i~~l~Q 53 (443)
.|.||++.|+.....+.+++.+.+ +| .|++|+|.+.. .-+|||+=|
T Consensus 3 ~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQ 82 (309)
T COG1125 3 EFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQ 82 (309)
T ss_pred eeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhh
Confidence 477888888888888888887766 11 26889998642 136899888
Q ss_pred ccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-h
Q psy208 54 EVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP-E 131 (443)
Q Consensus 54 ~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~ 131 (443)
.... +..|+.+-+.-. -++..|+...++.|+.++|..+|+++ +
T Consensus 83 qigLFPh~Tv~eNIa~V-----------------------------------P~L~~w~k~~i~~r~~ELl~lvgL~p~~ 127 (309)
T COG1125 83 QIGLFPHLTVAENIATV-----------------------------------PKLLGWDKERIKKRADELLDLVGLDPSE 127 (309)
T ss_pred hcccCCCccHHHHHHhh-----------------------------------hhhcCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 8764 444543322110 11223444457789999999999986 5
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
+.+|.+++|||||+| -.+..|.+.+ ++.+.|||+||||.+..-..+|||+
T Consensus 128 ~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 128 YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred HhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 789999999999999 1233343333 5689999999999999999999999
Q ss_pred EEeCCeeEEEcCChhHH
Q psy208 182 HLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y 198 (443)
+|+.|++..| ++.+..
T Consensus 208 vm~~G~i~Q~-~~P~~i 223 (309)
T COG1125 208 VMDAGEIVQY-DTPDEI 223 (309)
T ss_pred EecCCeEEEe-CCHHHH
Confidence 9999999988 554443
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-14 Score=133.19 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=79.6
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEe-ccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYF-SQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~-~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
...+.+|++|++.+|++++|+||||+|||||+|+|+++.- . .++|++ |-. ....+.+
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------l---a~~G~~vpa~-----~~~l~~~------- 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------M---AQIGCFVPAE-----YATLPIF------- 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------H---HHcCCCcchh-----hcCccCh-------
Confidence 4579999999999999999999999999999999987631 0 012221 111 0111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
..++..++.. +...+..+.+|+|+++. ..+..++.+|+++|||||++|+|+.....+
T Consensus 73 --------d~I~~~~~~~-d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l 129 (204)
T cd03282 73 --------NRLLSRLSND-DSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI 129 (204)
T ss_pred --------hheeEecCCc-cccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence 2223344443 34556778999999975 555667899999999999999999764444
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=125.18 Aligned_cols=147 Identities=20% Similarity=0.271 Sum_probs=105.2
Q ss_pred hhhhhhhcchHH----HHHHHcccccc-----------C----------C--CCCcceEEecC------------CceEE
Q psy208 9 VSNSIFCFSSEF----YCKALTLHLHL-----------E----------G--GMVSGQLRIPS------------HISVL 49 (443)
Q Consensus 9 ~~~~~~~~~~~~----~~~~~~~~~~~-----------~----------~--~~~~G~i~~~~------------~~~i~ 49 (443)
+.|+.+.|++.. ..+.+++.+.+ + | .+++|+|.+.+ --.|-
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQ 85 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQ 85 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcccee
Confidence 557777777777 77777777766 1 1 15779998653 23478
Q ss_pred EEecccCC--CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC
Q psy208 50 HVEQEVVG--DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLG 127 (443)
Q Consensus 50 ~l~Q~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lg 127 (443)
++.|+|.. .+..+++..+.. .+. ..+-.+.+.|+.++|+.+|
T Consensus 86 mVFQDp~~SLnP~~tv~~~l~E----------------pl~--------------------~~~~~~~~~~i~~~L~~Vg 129 (252)
T COG1124 86 MVFQDPYSSLNPRRTVGRILSE----------------PLR--------------------PHGLSKSQQRIAELLDQVG 129 (252)
T ss_pred EEecCCccccCcchhHHHHHhh----------------hhc--------------------cCCccHHHHHHHHHHHHcC
Confidence 89999853 344333333211 010 0122345567999999999
Q ss_pred CChhhhhccCCCCChHHHH-----------------------------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccC
Q psy208 128 FTPEMQKRATKHFSGGWRK-----------------------------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 128 l~~~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~ 177 (443)
+++.+++|.+++|||||+| ..|..|...| ++++.|+|+||||...+..+|
T Consensus 130 L~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 130 LPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred CCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHh
Confidence 9999999999999999999 2333344444 678999999999999999999
Q ss_pred CcEEEEeCCeeEEE
Q psy208 178 TDIFHLHSQRIDTY 191 (443)
Q Consensus 178 ~~i~~l~~g~i~~~ 191 (443)
+||++|++|+++..
T Consensus 210 dRi~Vm~~G~ivE~ 223 (252)
T COG1124 210 DRIAVMDNGQIVEI 223 (252)
T ss_pred hheeeeeCCeEEEe
Confidence 99999999999864
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-13 Score=128.67 Aligned_cols=100 Identities=17% Similarity=0.118 Sum_probs=74.1
Q ss_pred eEEEeCC--CEEEEECCCCCcHHHHHHHHH--cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCH
Q psy208 297 CLGATLE--SRICIVGDNGAGKTTLLKIIM--GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ 372 (443)
Q Consensus 297 sl~i~~G--e~i~iiG~NGsGKSTLlk~l~--G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (443)
++.+.++ .+++|+||||+|||||||.|+ +.+ +..|.........++|++|... .+....+..+
T Consensus 21 d~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~~~~~~~~d~i~~-~l~~~~si~~----------- 87 (213)
T cd03281 21 DTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPADSATIGLVDKIFT-RMSSRESVSS----------- 87 (213)
T ss_pred eEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcCCcEEeeeeeeee-eeCCccChhh-----------
Confidence 3444554 689999999999999999998 434 6778877777788999888642 2222111110
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCC--HHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHH
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLS--GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LS--gGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
.+| .-+-+|++++++++.+|.++|||||++++|+...
T Consensus 88 ----------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~ 126 (213)
T cd03281 88 ----------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG 126 (213)
T ss_pred ----------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence 112 3567899999999999999999999999998653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.7e-14 Score=130.51 Aligned_cols=112 Identities=19% Similarity=0.173 Sum_probs=65.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
+.+++|++|+. |++++|+||||||||||+|+|+|.... ..|.- +.. ..+++| . ..+....+..+.+.....
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~-v~a---~~~~~q-~-~~l~~~~~~~d~l~~~~s 85 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAP-VCA---SSFELP-P-VKIFTSIRVSDDLRDGIS 85 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCE-Eec---CccCcc-c-ceEEEeccchhccccccC
Confidence 45777776654 799999999999999999999985531 23321 111 123344 2 222233333332211000
Q ss_pred CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc--cCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM--AAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~--~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
....+.+|+.-+...+ .+|+++|+||||+++|+.....+..
T Consensus 86 ---------------------------~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~ 128 (199)
T cd03283 86 ---------------------------YFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASA 128 (199)
T ss_pred ---------------------------hHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHH
Confidence 0012223332222233 4999999999999999998876543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.3e-13 Score=126.65 Aligned_cols=141 Identities=18% Similarity=0.129 Sum_probs=104.9
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC------------CceEEEEecccCC--CCchHHHHHHhccHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS------------HISVLHVEQEVVG--DDTPAIDSVLECDTKRQNLLNREKT 82 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~------------~~~i~~l~Q~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (443)
|=++|++.++|.+.|.+ |.|.+.. .-++||+.|+|.. -..||.+++.-+..
T Consensus 42 GKSTL~~~l~GLl~p~~----G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~----------- 106 (235)
T COG1122 42 GKSTLLKLLNGLLKPTS----GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLE----------- 106 (235)
T ss_pred CHHHHHHHHcCcCcCCC----CEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchh-----------
Confidence 45788888998888887 6764321 1259999999853 35577666543210
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------
Q psy208 83 ITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------- 146 (443)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------- 146 (443)
...+...+++.|+..+|..+|+... +++++++|||||||
T Consensus 107 ------------------------n~g~~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 107 ------------------------NLGLPREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred ------------------------hcCCCHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 0011122466799999999999864 79999999999999
Q ss_pred ----------HHHHHHHHHhhh----CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------MAIIWLENYLQN----WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------~~i~wL~~~L~~----~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.+++ .+.|+|+||||.+++..+|+++++|++|++. +.|....+
T Consensus 162 LDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i 226 (235)
T COG1122 162 LDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEI 226 (235)
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHH
Confidence 566777776654 3579999999999999999999999999995 67775443
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=127.76 Aligned_cols=50 Identities=28% Similarity=0.226 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 393 VGSLSGGQKSRVAFARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 393 ~~~LSgGekqRl~lA~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
...||+||+++++||++++ .+|+++||||||++||+..++.+.+.|.++.
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~ 239 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV 239 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC
Confidence 4568999999999999975 7999999999999999999999999997653
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-13 Score=128.21 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=67.4
Q ss_pred EEEECCCCCcHHHHHHHHH-cCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCC
Q psy208 306 ICIVGDNGAGKTTLLKIIM-GIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGV 384 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~-G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl 384 (443)
++|+||||+|||||+|.|+ ..+.+..|.........++++.+-. ..++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il------------------------------~~~~~ 51 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIF------------------------------TRIGA 51 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEE------------------------------EEeCC
Confidence 6899999999999999998 4444555654444444555544321 12222
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHH
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
. +...+..+++|+|+++...++. .+.+|+++|+|||++++|+.....+..
T Consensus 52 ~-d~~~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~ 101 (185)
T smart00534 52 S-DSLAQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAA 101 (185)
T ss_pred C-CchhccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHH
Confidence 1 2345667889998887444333 345999999999999999997766643
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-13 Score=149.82 Aligned_cols=149 Identities=26% Similarity=0.319 Sum_probs=112.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC---CCceEEEcC--------ceEEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP---TAGTRTVHR--------NLKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p---~~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~~ 358 (443)
..+++|+|.-+++|+.+.++||.||||||||+.|+|.+.- ..|+|.+++ +..++|.+|+..+. +..|
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~--p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHF--PELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccc--ceeE
Confidence 4799999999999999999999999999999999998753 245676653 24588999875432 2333
Q ss_pred HHH---HHH-HhCC-----CCCHHH-----HHHHHhcCCCChhhhhc-----cCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 359 CVQ---LLE-AAFP-----GKPQEE-----YRRQLGGFGVSGDLALQ-----FVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 359 ~~~---~~~-~~~~-----~~~~~~-----~~~~L~~~gl~~~~~~~-----~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+.+ ... ...+ +..+.+ ...+++.+|+.. -.+. -+.-.|||||+||.+|-+++.+|.++.+
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~-~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDH-CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchh-hccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 322 222 1111 222222 335788889852 3333 3457899999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|+|||..+.-.+.++|+..
T Consensus 285 De~t~GLDSsTal~iik~lr~~ 306 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQL 306 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=126.12 Aligned_cols=156 Identities=17% Similarity=0.123 Sum_probs=107.7
Q ss_pred hhhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC----------CceEEEEe
Q psy208 6 VNTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS----------HISVLHVE 52 (443)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~----------~~~i~~l~ 52 (443)
+=.+.|+++.|+....++.+++.+.+ +| .|++|+|.+.+ .-++||++
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 33566777777665566666666555 21 25779987631 13699999
Q ss_pred cccCCC-CchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVVGD-DTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|++... ..|+.+.+... ..+ ......+...++..+++.+|+.+
T Consensus 87 q~~~~~~~~tv~e~l~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~~~~l~~- 130 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVF---------------GRY--------------------FGLSAAAARALVPPLLEFAKLEN- 130 (306)
T ss_pred ccCcCCCCCcHHHHHHHH---------------HHH--------------------cCCCHHHHHHHHHHHHHHcCCch-
Confidence 998654 34554433210 000 00011123347888899999975
Q ss_pred hhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccCCcEEE
Q psy208 132 MQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
..++++.+||||||+ .++.++.+.|+++ +.|||++|||.+++..+||+|+.
T Consensus 131 ~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~i 210 (306)
T PRK13537 131 KADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCV 210 (306)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 468999999999999 6777888877543 67999999999999999999999
Q ss_pred EeCCeeEEEcCChhHH
Q psy208 183 LHSQRIDTYRGNYEAF 198 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y 198 (443)
|++|++. +.|..+.+
T Consensus 211 l~~G~i~-~~g~~~~l 225 (306)
T PRK13537 211 IEEGRKI-AEGAPHAL 225 (306)
T ss_pred EECCEEE-EECCHHHH
Confidence 9999996 56886654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.2e-12 Score=122.08 Aligned_cols=83 Identities=27% Similarity=0.352 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++++.+|+.....++++.+||||||+ .+..+|.+.|++ .+.|||+|
T Consensus 129 ~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiiv 208 (257)
T PRK10619 129 RERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 208 (257)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578888999999854347889999999999 677788887643 46899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||+|++|++|++. +.|+++++.
T Consensus 209 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 209 THEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred eCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 99999999999999999999997 568877653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=125.39 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=66.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++..+++.+|+++ ..++++.+||||||+ .+..++.+.|+++ +.|||+||
T Consensus 114 ~~~~~ll~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~s 192 (303)
T TIGR01288 114 AVIPSLLEFARLES-KADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 192 (303)
T ss_pred HHHHHHHHHCCChh-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 35677888899975 468999999999999 5777888877543 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++. +.|..++.
T Consensus 193 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 222 (303)
T TIGR01288 193 HFMEEAERLCDRLCVLESGRKI-AEGRPHAL 222 (303)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999986 56776543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-12 Score=120.59 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+
T Consensus 114 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 192 (235)
T cd03261 114 REIVLEKLEAVGLRG-AEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIM 192 (235)
T ss_pred HHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 346788899999975 458999999999999 567777777754 4689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|.++.+
T Consensus 193 vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 224 (235)
T cd03261 193 VTHDLDTAFAIADRIAVLYDGKIV-AEGTPEEL 224 (235)
T ss_pred EecCHHHHHHhcCEEEEEECCeEE-EecCHHHH
Confidence 999999999999999999999986 56776655
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.5e-12 Score=125.05 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCC-CCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATK-HFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~-~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
..++..++..+|++....++++. +||||||+ .+..++.++|+++ +.|||+
T Consensus 120 ~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~ 199 (243)
T TIGR01978 120 LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLI 199 (243)
T ss_pred HHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEE
Confidence 45788999999997544577887 59999999 5778888888654 579999
Q ss_pred EecCHHHHhcc-CCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSV-PTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+ ||+|+.|++|++. +.|+++.+.
T Consensus 200 vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 200 ITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred EEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 99999999998 8999999999996 568877553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=125.78 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
+..++.+++..+||+....++++.+||||||+ .+..++.+.|+ +.+.|||+
T Consensus 141 ~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiii 220 (305)
T PRK13651 141 AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIIL 220 (305)
T ss_pred HHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34578899999999755678999999999999 46666666664 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++.. .|.....
T Consensus 221 vtHd~~~~~~~adrv~vl~~G~i~~-~g~~~~~ 252 (305)
T PRK13651 221 VTHDLDNVLEWTKRTIFFKDGKIIK-DGDTYDI 252 (305)
T ss_pred EeeCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999864 4655443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=125.67 Aligned_cols=141 Identities=22% Similarity=0.242 Sum_probs=99.3
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC----------CceEEEEecccCCC-CchHHHHHHhccHHHHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS----------HISVLHVEQEVVGD-DTPAIDSVLECDTKRQNLLNREKTITQ 85 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~----------~~~i~~l~Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~ 85 (443)
|=++|++.++|.+.|+. |+|.+.+ .-++||++|++... ..|+.+.+... .
T Consensus 31 GKSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~---------------~ 91 (302)
T TIGR01188 31 GKTTTIRMLTTLLRPTS----GTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMM---------------G 91 (302)
T ss_pred CHHHHHHHHhCCCCCCc----eEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHH---------------H
Confidence 34677788888777665 8887632 12489999997653 34554332110 0
Q ss_pred HHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-------------------
Q psy208 86 AINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------- 146 (443)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------- 146 (443)
.+. + ....+...++.++|..+|+.+ ..++++.+||||||+
T Consensus 92 ~~~-~-------------------~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 150 (302)
T TIGR01188 92 RLY-G-------------------LPKDEAEERAEELLELFELGE-AADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 (302)
T ss_pred HHc-C-------------------CCHHHHHHHHHHHHHHcCChh-HhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 000 0 001122347888999999985 468999999999999
Q ss_pred -------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|+++ +.|||++|||.+++..+||+|+.|++|++. +.|+.+.+
T Consensus 151 Pt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~l 211 (302)
T TIGR01188 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII-AEGTPEEL 211 (302)
T ss_pred CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5777777777543 579999999999999999999999999996 46776554
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-12 Score=123.54 Aligned_cols=84 Identities=19% Similarity=0.171 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvii 165 (443)
.+.++.++|..+|+.+...++++.+||||||+ .+..+|.+.|+ +.+.|||+
T Consensus 120 ~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~ 199 (288)
T PRK13643 120 AEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199 (288)
T ss_pred HHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 34578899999999754568999999999999 56667776664 34689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|++|++|++. +.|..+++.
T Consensus 200 vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 232 (288)
T PRK13643 200 VTHLMDDVADYADYVYLLEKGHII-SCGTPSDVF 232 (288)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999997 568877654
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-12 Score=118.19 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++.++++.+|+++ ..++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 109 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 187 (220)
T cd03265 109 RERIDELLDFVGLLE-AADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILL 187 (220)
T ss_pred HHHHHHHHHHcCCHH-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 347888999999975 468999999999999 566777776643 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCCh
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNY 195 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y 195 (443)
||||.+++..+|++|++|++|++.. .|+.
T Consensus 188 ~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~ 216 (220)
T cd03265 188 TTHYMEEAEQLCDRVAIIDHGRIIA-EGTP 216 (220)
T ss_pred EeCCHHHHHHhCCEEEEEeCCEEEE-eCCh
Confidence 9999999999999999999999964 3553
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-12 Score=124.27 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=67.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tvii 165 (443)
+.++.+++..+|+.....++++.+||||||+ .+..++.+.|+ +++.|||+
T Consensus 128 ~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 207 (258)
T PRK11701 128 RATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVI 207 (258)
T ss_pred HHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 3467888999999754578999999999999 56777777764 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|..+++
T Consensus 208 isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~ 239 (258)
T PRK11701 208 VTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQV 239 (258)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999996 45766554
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=117.10 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=63.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEe
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVS 167 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVS 167 (443)
+.++..++..+|+++ ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vs 186 (211)
T cd03264 108 KARVDEVLELVNLGD-RAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILST 186 (211)
T ss_pred HHHHHHHHHHCCCHH-HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 346788899999975 468899999999999 6788888888654 58999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++.++||+++.|++|++..
T Consensus 187 H~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 187 HIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999863
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.9e-12 Score=118.93 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
+.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 116 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~v 194 (216)
T TIGR00960 116 NERVSAALEKVGLEG-KAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVA 194 (216)
T ss_pred HHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999975 468899999999999 5777777777543 6799999
Q ss_pred ecCHHHHhccCCcEEEEeCCee
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i 188 (443)
|||.+++..+||+|+.|++|++
T Consensus 195 sH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 195 THDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred eCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=121.66 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=111.9
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC------------CceEEEEe
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS------------HISVLHVE 52 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~------------~~~i~~l~ 52 (443)
++.|++..|++..-++.|++++.- +| .||+|.|.... .-+||++-
T Consensus 4 ~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 4 RINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred eehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEE
Confidence 345677777776666655555432 22 15778887532 24799999
Q ss_pred cccC-CCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChh
Q psy208 53 QEVV-GDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPE 131 (443)
Q Consensus 53 Q~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~ 131 (443)
|+.. +...||.+.+--+.. +. ....+..++..|+.+.|..+.++..
T Consensus 84 Q~YALF~HmtVa~NIAFGl~-~~--------------------------------~~~p~~~~~r~rv~elL~lvqL~~l 130 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLK-VR--------------------------------KERPSEAEIRARVEELLRLVQLEGL 130 (345)
T ss_pred echhhcccchHHhhhhhccc-cc--------------------------------ccCCChhhHHHHHHHHHHHhcccch
Confidence 9975 356666655432210 00 0011223456789999999999853
Q ss_pred hhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEE
Q psy208 132 MQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIF 181 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~ 181 (443)
-++.+.+||||||| +-..||.+...+++.|.|+||||.++.-.+|+||+
T Consensus 131 -a~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvv 209 (345)
T COG1118 131 -ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVV 209 (345)
T ss_pred -hhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEE
Confidence 47999999999999 45568888888899999999999999999999999
Q ss_pred EEeCCeeEEEcCChhHH
Q psy208 182 HLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 182 ~l~~g~i~~~~G~y~~y 198 (443)
+|++|+|....-..+.|
T Consensus 210 vl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 210 VLNQGRIEQVGPPDEVY 226 (345)
T ss_pred EecCCeeeeeCCHHHHh
Confidence 99999998775555555
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=122.88 Aligned_cols=82 Identities=16% Similarity=0.192 Sum_probs=67.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++|+.+|+.....++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tvii 201 (290)
T PRK13634 122 KQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVL 201 (290)
T ss_pred HHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 3578889999999754568999999999999 466666666643 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 202 itHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~ 233 (290)
T PRK13634 202 VTHSMEDAARYADQIVVMHKGTVF-LQGTPREI 233 (290)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999996 56776654
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=117.93 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|++....++++.+||||||+ .+..++.+.|+. .+.|||+|
T Consensus 109 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~ 188 (241)
T PRK14250 109 VDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWI 188 (241)
T ss_pred HHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 467788999999744568899999999999 577777777754 47899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCC
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGN 194 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~ 194 (443)
|||.+++..+||+|+.|++|++......
T Consensus 189 sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (241)
T PRK14250 189 THNMEQAKRIGDYTAFLNKGILVEYAKT 216 (241)
T ss_pred eccHHHHHHhCCEEEEEeCCEEEEeCCH
Confidence 9999999999999999999999765433
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=116.99 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 109 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 187 (213)
T cd03259 109 ARVRELLELVGLEG-LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYV 187 (213)
T ss_pred HHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46788899999985 468899999999999 677788888754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 188 sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 188 THDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred ecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999863
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=122.53 Aligned_cols=81 Identities=16% Similarity=0.350 Sum_probs=70.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEe
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVS 167 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVS 167 (443)
..++..++..+|+.+. .++++.+||||||+ .++.|+.+.|+.+ +.|||++|
T Consensus 111 ~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~s 189 (301)
T TIGR03522 111 KQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILST 189 (301)
T ss_pred HHHHHHHHHHCCCchH-hcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 4578889999999854 68999999999999 6778888888655 58999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+.+.++||||+.|++|++. +.|+.+++
T Consensus 190 H~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 190 HIMQEVEAICDRVIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999997 67887765
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=119.85 Aligned_cols=147 Identities=19% Similarity=0.202 Sum_probs=102.5
Q ss_pred chHHHHHHHccccc-cCCCCCcceEEec---------------CCceEEEEecccC--CCCchHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLH-LEGGMVSGQLRIP---------------SHISVLHVEQEVV--GDDTPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~G~i~~~---------------~~~~i~~l~Q~~~--~~~~~~~~~~~~~~~~~~~l~~ 78 (443)
|=+++.++|-+.+. +.+.-.+|+|.+. +|-+|++++|++- +++.. .+..
T Consensus 43 GKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~-------------~Ig~ 109 (316)
T COG0444 43 GKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM-------------TIGD 109 (316)
T ss_pred CHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChh-------------hHHH
Confidence 34788999999887 5555566777542 3568999999973 22221 1222
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhc-ccCCHHHHHHHHHHhCCCChh--hhhccCCCCChHHHH---------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAI-EADKAPARASVILAGLGFTPE--MQKRATKHFSGGWRK--------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rv~~~L~~lgl~~~--~~~~~~~~LSGGqr~--------- 146 (443)
++.+ ....+... ...++..++.++|+.+||++. .+++.+++|||||||
T Consensus 110 Qi~E--------------------~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala 169 (316)
T COG0444 110 QIAE--------------------VLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALA 169 (316)
T ss_pred HHHH--------------------HHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHh
Confidence 2111 11111111 112355789999999999854 678999999999999
Q ss_pred --------------------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 --------------------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 --------------------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
..|..|.+-| ++++.|+|+||||..++.++||||++|..|++..+ |+..+
T Consensus 170 ~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~-g~~~~ 240 (316)
T COG0444 170 LNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEE-GPVEE 240 (316)
T ss_pred CCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEe-CCHHH
Confidence 3344455555 45899999999999999999999999999999876 55443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-11 Score=121.24 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeE
Q psy208 115 APARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTL 163 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tv 163 (443)
...++.++|+.+|+.. ...++++.+||||||+ .+..+|.+.|++ .+.||
T Consensus 119 ~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tv 198 (287)
T PRK13637 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTI 198 (287)
T ss_pred HHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 3457889999999972 3568999999999999 566677776643 46799
Q ss_pred EEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 164 LVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 164 iiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+||||.+++..+||+|++|++|++.. .|....+
T Consensus 199 i~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~ 232 (287)
T PRK13637 199 ILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREV 232 (287)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999999999974 5776654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=121.20 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=68.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
..++.++|..+|+.....++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvliv 201 (287)
T PRK13641 122 KEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201 (287)
T ss_pred HHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3578889999999744568999999999999 5777777777543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. ..|..+.+
T Consensus 202 sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 232 (287)
T PRK13641 202 THNMDDVAEYADDVLVLEHGKLI-KHASPKEI 232 (287)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999986 45776654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=115.51 Aligned_cols=75 Identities=21% Similarity=0.256 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..++..+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~ 186 (213)
T cd03301 108 DERVREVAELLQIEH-LLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIY 186 (213)
T ss_pred HHHHHHHHHHcCCHH-HHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 346788899999974 468999999999999 567777777743 4789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEE
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTY 191 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~ 191 (443)
||||.+++..+|++|+.|++|++..+
T Consensus 187 ~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 187 VTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEEec
Confidence 99999999999999999999998754
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=115.23 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=63.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
+.++.++++.+|++. ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 106 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~ 184 (210)
T cd03269 106 RRRIDEWLERLELSE-YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILS 184 (210)
T ss_pred HHHHHHHHHHcCChH-HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346888899999974 467899999999999 5777888877543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 185 sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 185 THQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCCHHHHHHhhhEEEEEeCCEEEe
Confidence 999999999999999999999864
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=120.06 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++|..+|+.....++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 122 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~ 201 (286)
T PRK13646 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIIL 201 (286)
T ss_pred HHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4578889999999744568899999999999 577777777753 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|++|++|++. +.|...+..
T Consensus 202 vtH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 234 (286)
T PRK13646 202 VSHDMNEVARYADEVIVMKEGSIV-SQTSPKELF 234 (286)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 999999999999999999999997 457766643
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.1e-12 Score=118.14 Aligned_cols=161 Identities=17% Similarity=0.126 Sum_probs=117.3
Q ss_pred cchhhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC--------------Cc
Q psy208 4 QRVNTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS--------------HI 46 (443)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~--------------~~ 46 (443)
+.+=++.++++.||..++++.+++.+.. .| .|++|+|.+-+ .-
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5566788999999999888888887766 11 26889997631 12
Q ss_pred eEEEEecccC-CCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHh
Q psy208 47 SVLHVEQEVV-GDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAG 125 (443)
Q Consensus 47 ~i~~l~Q~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~ 125 (443)
++|++.|.-. +++.||++-|.-- +.++..+....++..+..-|+.
T Consensus 86 r~GvlFQ~gALFssltV~eNVafp----------------------------------lre~~~lp~~~i~~lv~~KL~~ 131 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFP----------------------------------LREHTKLPESLIRELVLMKLEL 131 (263)
T ss_pred heeEEeeccccccccchhHhhhee----------------------------------hHhhccCCHHHHHHHHHHHHHh
Confidence 4888888754 3555665544210 0111112222344456667888
Q ss_pred CCCChhhhhccCCCCChHHHH-----------------------------HHHHHHHHHhh-hCCCeEEEEecCHHHHhc
Q psy208 126 LGFTPEMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQ-NWPTTLLVVSHDRHFLDS 175 (443)
Q Consensus 126 lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~-~~~~tviiVSHDr~fLd~ 175 (443)
+|++....++.+++||||+++ ..+.-|..-|+ +.+.|+|+||||.+-+..
T Consensus 132 VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~ 211 (263)
T COG1127 132 VGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLT 211 (263)
T ss_pred cCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHh
Confidence 999976678999999999998 46667777774 578999999999999999
Q ss_pred cCCcEEEEeCCeeEEEcCChhHHH
Q psy208 176 VPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 176 v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
+||+|+.|.+|++. +.|.+++..
T Consensus 212 i~Drv~~L~~gkv~-~~Gt~~el~ 234 (263)
T COG1127 212 IADRVAVLADGKVI-AEGTPEELL 234 (263)
T ss_pred hhceEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999996 679987764
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-11 Score=120.07 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++..+|..+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 116 ~~~~~~~l~~~~L~~-~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~ 194 (274)
T PRK13647 116 ERRVEEALKAVRMWD-FRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVA 194 (274)
T ss_pred HHHHHHHHHHCCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357888999999974 578999999999999 566677777643 36899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++.++||+|+.|++|++.. .|..+.+
T Consensus 195 tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 195 THDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 999999999999999999999964 5666544
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=116.12 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=44.7
Q ss_pred cCCCCCHH--HHHHHHHHHHhccCCCeEEEeCCC-----CCCCHHHHHHHHHHHcccc
Q psy208 392 FVGSLSGG--QKSRVAFARMCMAAPNFLVLDEPT-----NHLDIETIEALGKAINKYT 442 (443)
Q Consensus 392 ~~~~LSgG--ekqRl~lA~al~~~p~lLiLDEPT-----n~LD~~s~~~l~~~L~~~~ 442 (443)
..+..||+ +++++.||++++.+|++++||||| ++||+.+++.+.+.|.++.
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 34455555 999999999999999999999999 9999999999999998763
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=122.83 Aligned_cols=82 Identities=13% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLL 164 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvi 164 (443)
.+.|+.++|+.+|+.+ ..++++.+||||||| .+..++.+.|++ .+.|||
T Consensus 117 ~~~~v~e~l~~vgL~~-~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tii 195 (343)
T TIGR02314 117 IKRKVTELLALVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTIL 195 (343)
T ss_pred HHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3457889999999985 468999999999999 455666666543 478999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+||||.+++.++||+|+.|++|++.. .|+.++.
T Consensus 196 liTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v 228 (343)
T TIGR02314 196 LITHEMDVVKRICDCVAVISNGELIE-QGTVSEI 228 (343)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999974 5776655
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=118.52 Aligned_cols=139 Identities=20% Similarity=0.199 Sum_probs=94.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecC-----------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS-----------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQA 86 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~-----------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 86 (443)
++|.+.+++.+.| .+|+|...+ .-+++|+||.+.. ...+|.+.|..+.......
T Consensus 42 STLLk~l~g~l~p----~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~---------- 107 (258)
T COG1120 42 STLLKCLAGLLKP----KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL---------- 107 (258)
T ss_pred HHHHHHHhccCCC----CCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCccccc----------
Confidence 3444444444444 448887542 1279999999754 4567877776553211000
Q ss_pred HhCCCCChhhHHHHHHHHHHHhhcccCC--HHHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------
Q psy208 87 INNGTADANMSTELTQVFAELEAIEADK--APARASVILAGLGFTPEMQKRATKHFSGGWRK------------------ 146 (443)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------ 146 (443)
+..|. -++.+.++|+.+|+.+ ..+|++.+|||||||
T Consensus 108 -----------------------~~~~~~~D~~~v~~aL~~~~~~~-la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 108 -----------------------FGRPSKEDEEIVEEALELLGLEH-LADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred -----------------------ccCCCHhHHHHHHHHHHHhCcHH-HhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 00111 1236888999999986 468999999999999
Q ss_pred -----------HHHHHHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChh
Q psy208 147 -----------MAIIWLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 147 -----------~~i~wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~ 196 (443)
-.+.-|...| ++.+.|||+|.||..+....||+++.|++|++.. .|...
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a-~G~p~ 224 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVA-QGTPE 224 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEe-ecCcc
Confidence 1233344444 4668999999999999999999999999999975 56654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=116.46 Aligned_cols=82 Identities=23% Similarity=0.314 Sum_probs=67.6
Q ss_pred HHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEE
Q psy208 116 PARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLL 164 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvi 164 (443)
..++.++++.+|+.. ...++++.+||||||+ .+..++.+.|++ .+.|||
T Consensus 111 ~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvi 190 (242)
T cd03295 111 RERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIV 190 (242)
T ss_pred HHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence 357888999999985 3568999999999999 567777777754 367999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+||||.+++..+||+|+.|++|++.. .|..+.+
T Consensus 191 i~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 191 FVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999964 4665544
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=115.87 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiV 166 (443)
..++.++++.+|+++ ..++++.+||||||+ .+..++.++|+++ +.|||+|
T Consensus 114 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 192 (218)
T cd03266 114 TARLEELADRLGMEE-LLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFS 192 (218)
T ss_pred HHHHHHHHHHcCCHH-HHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 357788899999974 468899999999999 5667777777543 6799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+||+|+.|++|++..
T Consensus 193 tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 193 THIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred eCCHHHHHHhcCEEEEEECCEEee
Confidence 999999999999999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=122.86 Aligned_cols=80 Identities=18% Similarity=0.152 Sum_probs=67.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|+++ ..++++.+||||||+ .+..++.++|++ .+.|||++|
T Consensus 151 ~~~~~ll~~~~L~~-~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisS 229 (340)
T PRK13536 151 AVIPSLLEFARLES-KADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTT 229 (340)
T ss_pred HHHHHHHHHcCCch-hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 46777888899985 468999999999999 567777777754 378999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+.+.++||+|+.|++|++. +.|..+..
T Consensus 230 H~l~e~~~~~d~i~il~~G~i~-~~g~~~~l 259 (340)
T PRK13536 230 HFMEEAERLCDRLCVLEAGRKI-AEGRPHAL 259 (340)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 9999999999999999999996 56776654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.3e-11 Score=115.16 Aligned_cols=82 Identities=21% Similarity=0.265 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+...+.++| ++.+.|||+|
T Consensus 108 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~ 186 (232)
T PRK10771 108 EKLHAIARQMGIED-LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMV 186 (232)
T ss_pred HHHHHHHHHcCcHH-HHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 56888999999974 578999999999999 4554555544 3347799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
|||.+++..+||+|+.|++|++. +.|+++++..
T Consensus 187 sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 187 SHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999996 5688877643
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=121.49 Aligned_cols=146 Identities=15% Similarity=0.169 Sum_probs=97.3
Q ss_pred chHHHHHHHccccccCCCCCcceEEecCC---------------ceEEEEecccC--CCC-chHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPSH---------------ISVLHVEQEVV--GDD-TPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~~---------------~~i~~l~Q~~~--~~~-~~~~~~~~~~~~~~~~l~~ 78 (443)
|=++|.+.+.|.+.|.+.+++|+|.+.+. -.|+|++|++. ... .++.+.+...
T Consensus 45 GKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~--------- 115 (326)
T PRK11022 45 GKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--------- 115 (326)
T ss_pred hHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHH---------
Confidence 34688888888887666677898876421 14999999973 222 2322221110
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH----------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP--EMQKRATKHFSGGWRK---------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~---------- 146 (443)
+ ..+......+...++.++|+.+|+++ ..+++.+++|||||||
T Consensus 116 --------l-----------------~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~ 170 (326)
T PRK11022 116 --------I-----------------KVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIAC 170 (326)
T ss_pred --------H-----------------HHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHh
Confidence 0 00000011123457889999999974 3568899999999999
Q ss_pred ----------------H----HHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 ----------------M----AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 ----------------~----~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
. -+.+|.++-++.+.|+|+||||..++..+||+|++|.+|++... |+..+
T Consensus 171 ~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~ 240 (326)
T PRK11022 171 RPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHD 240 (326)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 2 22334443334678999999999999999999999999999764 66444
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=114.32 Aligned_cols=71 Identities=21% Similarity=0.404 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 105 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 183 (205)
T cd03226 105 EQAETVLKDLDLYA-LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVIT 183 (205)
T ss_pred HHHHHHHHHcCCch-hcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 57888999999985 468999999999999 5777888877544 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCee
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i 188 (443)
||.+++..+||+|+.|++|++
T Consensus 184 H~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 184 HDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-12 Score=120.91 Aligned_cols=112 Identities=22% Similarity=0.268 Sum_probs=70.0
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP 368 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~ 368 (443)
..+.+|++|++.+ ++++|+||||||||||||+|++..- ...|.........++|+++-. ..
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~-----~~------------ 79 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIF-----TR------------ 79 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEe-----cc------------
Confidence 4588899999887 8999999999999999999986431 123332222223444443210 00
Q ss_pred CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH----HHHHHHh--ccCCCeEEEeCC---CCCCCHHHH-HHHHHHH
Q psy208 369 GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR----VAFARMC--MAAPNFLVLDEP---TNHLDIETI-EALGKAI 438 (443)
Q Consensus 369 ~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR----l~lA~al--~~~p~lLiLDEP---Tn~LD~~s~-~~l~~~L 438 (443)
++. ..++|.|+.+. +.|+.++ +.+|.++||||| |+++|..+. ..+.+.|
T Consensus 80 -------------~~~--------~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l 138 (216)
T cd03284 80 -------------IGA--------SDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYL 138 (216)
T ss_pred -------------CCc--------hhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHH
Confidence 111 11344444332 2344444 579999999999 999998763 5555555
Q ss_pred cc
Q psy208 439 NK 440 (443)
Q Consensus 439 ~~ 440 (443)
.+
T Consensus 139 ~~ 140 (216)
T cd03284 139 HE 140 (216)
T ss_pred Hh
Confidence 44
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=116.53 Aligned_cols=80 Identities=24% Similarity=0.349 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.+++..+|+.. ..++++.+||||||+ .+..++.++|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~gl~~-~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~t 201 (250)
T PRK11264 123 ARARELLAKVGLAG-KETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVT 201 (250)
T ss_pred HHHHHHHHHcCCcc-hhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46778889999974 468899999999999 577788777743 467999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|++|++|++. +.|+.+++
T Consensus 202 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 231 (250)
T PRK11264 202 HEMSFARDVADRAIFMDQGRIV-EQGPAKAL 231 (250)
T ss_pred CCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999986 45776655
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.2e-11 Score=115.83 Aligned_cols=81 Identities=20% Similarity=0.305 Sum_probs=68.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++++.+|+++ .+++++.+||||||+ .+..++.++|++ .+.|||+||
T Consensus 115 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~s 193 (240)
T PRK09493 115 KQARELLAKVGLAE-RAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVT 193 (240)
T ss_pred HHHHHHHHHcCChH-HHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46788899999974 468999999999999 577777777743 368999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||.+++..+||+|+.|++|++. +.|+++++.
T Consensus 194 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 194 HEIGFAEKVASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999999996 568877653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=122.73 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+.+ ..++++.+||||||| .+..++.+.| ++.+.|+|+
T Consensus 111 ~~~~~~~l~~lgL~~-~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~ 189 (369)
T PRK11000 111 NQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY 189 (369)
T ss_pred HHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 457888999999975 468999999999999 4445555544 345789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++..+ |..++.
T Consensus 190 vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~i 221 (369)
T PRK11000 190 VTHDQVEAMTLADKIVVLDAGRVAQV-GKPLEL 221 (369)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 99999999999999999999999754 665443
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=118.30 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=65.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+|..+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 122 ~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiiv 200 (269)
T PRK11831 122 STVMMKLEAVGLRG-AAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVV 200 (269)
T ss_pred HHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 46777889999975 468899999999999 466666666643 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||++++..+||+|++|++|++. +.|..+++
T Consensus 201 sH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 231 (269)
T PRK11831 201 SHDVPEVLSIADHAYIVADKKIV-AHGSAQAL 231 (269)
T ss_pred ecCHHHHHHhhCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999986 45776654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.6e-11 Score=117.52 Aligned_cols=83 Identities=12% Similarity=0.181 Sum_probs=69.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+...++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 126 ~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 205 (267)
T PRK15112 126 EKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEE
Confidence 3467889999999644567889999999999 577777777754 4679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|+.|++|++. ..|.++++.
T Consensus 206 vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 238 (267)
T PRK15112 206 VTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVL 238 (267)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHh
Confidence 999999999999999999999996 568877664
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=122.11 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNRE 80 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~ 80 (443)
|=++|.+.|.|.+.|++ |+|.+.. .-.++|++|++.. ...|+.+.+.... +
T Consensus 31 GKSTLLr~L~Gl~~p~~----G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~--------~- 97 (363)
T TIGR01186 31 GKSTTVRMLNRLIEPTA----GQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP--------E- 97 (363)
T ss_pred hHHHHHHHHhCCCCCCc----eEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHH--------H-
Confidence 45788899999888766 7877532 1269999999865 3456654332110 0
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------
Q psy208 81 KTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------------- 146 (443)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-------------- 146 (443)
+ ..+...+...++.++|+.+|++. ..++++.+|||||||
T Consensus 98 ------~--------------------~~~~~~~~~~~~~~~l~~vgL~~-~~~~~p~~LSGGq~QRV~lARAL~~~p~i 150 (363)
T TIGR01186 98 ------L--------------------LGWPEQERKEKALELLKLVGLEE-YEHRYPDELSGGMQQRVGLARALAAEPDI 150 (363)
T ss_pred ------H--------------------cCCCHHHHHHHHHHHHHhcCCch-hhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 0 00111123457889999999974 578999999999999
Q ss_pred ------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 147 ------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 147 ------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+..++.+.|. ..+.|||+||||.+++..+||+|+.|++|++.. .|..+++.
T Consensus 151 LLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~ 218 (363)
T TIGR01186 151 LLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEIL 218 (363)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHH
Confidence 45666666653 347899999999999999999999999999864 57766553
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=115.74 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++++.+|++. ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 121 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~v 199 (236)
T cd03219 121 RERAEELLERVGLAD-LADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLV 199 (236)
T ss_pred HHHHHHHHHHcCccc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 346888899999975 468999999999999 577777777754 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|++|++|++. +.|+.+++
T Consensus 200 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 200 EHDMDVVMSLADRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred ecCHHHHHHhCCEEEEEeCCEEE-eecCHHHh
Confidence 99999999999999999999996 45766554
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=113.10 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 110 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~ 188 (220)
T cd03293 110 ERAEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLV 188 (220)
T ss_pred HHHHHHHHHcCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46788999999974 468899999999999 566677776643 36799999
Q ss_pred ecCHHHHhccCCcEEEEe--CCeeE
Q psy208 167 SHDRHFLDSVPTDIFHLH--SQRID 189 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~--~g~i~ 189 (443)
|||.+++..+||+|+.|+ +|++.
T Consensus 189 sH~~~~~~~~~d~i~~l~~~~G~i~ 213 (220)
T cd03293 189 THDIDEAVFLADRVVVLSARPGRIV 213 (220)
T ss_pred ecCHHHHHHhCCEEEEEECCCCEEE
Confidence 999999999999999999 68875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.9e-11 Score=118.02 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|+.....++++.+||||||+ .+..++.+.|++ .+.|||+||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 467788889999754568999999999999 577788877754 367999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++.. .|..++.
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 232 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLVL-SGKPKDI 232 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999874 4665544
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-11 Score=116.27 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=102.0
Q ss_pred hhhhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC------CceEEEEecccC
Q psy208 6 VNTVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS------HISVLHVEQEVV 56 (443)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~------~~~i~~l~Q~~~ 56 (443)
+=.+.|+++.|+...+++.+++.+.+ + | .+++|+|.+.. .-.++|++|++.
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 34567777777776677777777766 1 1 25779997632 125899999975
Q ss_pred CC-CchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhc
Q psy208 57 GD-DTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKR 135 (443)
Q Consensus 57 ~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~ 135 (443)
.. ..++.+.+.... . ...+.++..++..+|+.+ ..++
T Consensus 92 l~~~~tv~enl~~~~---------------------~--------------------~~~~~~~~~~l~~~gl~~-~~~~ 129 (257)
T PRK11247 92 LLPWKKVIDNVGLGL---------------------K--------------------GQWRDAALQALAAVGLAD-RANE 129 (257)
T ss_pred CCCCCcHHHHHHhcc---------------------c--------------------chHHHHHHHHHHHcCChh-HhcC
Confidence 43 234443322100 0 001246778888999975 4688
Q ss_pred cCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 136 ATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 136 ~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++.+||||||+ .+..++.++|+ +.+.|||+||||.+++..+||+|+.|++
T Consensus 130 ~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~ 209 (257)
T PRK11247 130 WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEE 209 (257)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999 56666666663 3478999999999999999999999999
Q ss_pred CeeEEEcCC
Q psy208 186 QRIDTYRGN 194 (443)
Q Consensus 186 g~i~~~~G~ 194 (443)
|++.. .|.
T Consensus 210 G~i~~-~~~ 217 (257)
T PRK11247 210 GKIGL-DLT 217 (257)
T ss_pred CEEEe-ecc
Confidence 99864 444
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=120.16 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=69.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++..++..+|++....++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 153 ~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiiv 232 (320)
T PRK13631 153 KKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVI 232 (320)
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3478889999999754578999999999999 567777777743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
|||.+++..+||+|++|++|++. ..|..+++..
T Consensus 233 tHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 233 THTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999997 4577766543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-11 Score=121.22 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+.+ ..++++.+||||||| ....+|.+.| ++++.|+|+
T Consensus 112 ~~~~~~~l~~~gL~~-~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~ 190 (356)
T PRK11650 112 EERVAEAARILELEP-LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLY 190 (356)
T ss_pred HHHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999975 578999999999999 3445555544 345789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+.+..+||+|+.|++|++..+ |..++.
T Consensus 191 vTHd~~ea~~l~D~i~vl~~G~i~~~-g~~~~~ 222 (356)
T PRK11650 191 VTHDQVEAMTLADRVVVMNGGVAEQI-GTPVEV 222 (356)
T ss_pred EeCCHHHHHHhCCEEEEEeCCEEEEE-CCHHHH
Confidence 99999999999999999999999754 666543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=115.80 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++++.+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 123 ~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 201 (243)
T TIGR02315 123 KERALSALERVGLAD-KAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVII 201 (243)
T ss_pred HHHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 357888899999974 468999999999999 567777777754 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++.++||+|+.|++|++. +.|+++..
T Consensus 202 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 202 NLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred EeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 999999999999999999999986 56776654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=114.75 Aligned_cols=130 Identities=17% Similarity=0.123 Sum_probs=94.2
Q ss_pred chHHHHHHHccccccCCCCCcceEEec------CCceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhC
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIP------SHISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINN 89 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~------~~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 89 (443)
|=++|++.|.|...|++ |+|.+. ++-.++|+.|+... +=.|+.+-|.-+.. +
T Consensus 41 GKSTLLriiAGL~~p~~----G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~---------------~-- 99 (248)
T COG1116 41 GKSTLLRLIAGLEKPTS----GEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLE---------------L-- 99 (248)
T ss_pred CHHHHHHHHhCCCCCCC----ceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhh---------------c--
Confidence 34566667776666665 777653 35589999999764 33455544432100 0
Q ss_pred CCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------
Q psy208 90 GTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------- 146 (443)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------- 146 (443)
......+.++++.++|+.+|+.. ..++.+++|||||||
T Consensus 100 ------------------~~~~~~e~~~~a~~~L~~VgL~~-~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 100 ------------------RGKSKAEARERAKELLELVGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred ------------------cccchHhHHHHHHHHHHHcCCcc-hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 00122334458999999999985 468999999999999
Q ss_pred -------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCC
Q psy208 147 -------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186 (443)
Q Consensus 147 -------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g 186 (443)
..-+||.+..++.+.|||+||||.+..-.++|||+.|.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 3555788877888999999999999999999999999873
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.5e-11 Score=120.42 Aligned_cols=80 Identities=16% Similarity=0.313 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+++ ..++++.+||||||| .+..++.++|++ .+.|||+|
T Consensus 119 ~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilv 197 (343)
T PRK11153 119 ARVTELLELVGLSD-KADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLI 197 (343)
T ss_pred HHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 47888899999975 468999999999999 566677777754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|...+.
T Consensus 198 tH~~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 198 THEMDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999996 45665443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-11 Score=117.59 Aligned_cols=133 Identities=17% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCcceEEecC--------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHH
Q psy208 35 MVSGQLRIPS--------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTE 99 (443)
Q Consensus 35 ~~~G~i~~~~--------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 99 (443)
|++|+|.+.. .-+||++.|++.. ...||.+-+.- .|+
T Consensus 58 PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~------PLe---------------------- 109 (339)
T COG1135 58 PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF------PLE---------------------- 109 (339)
T ss_pred CCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhh------hHh----------------------
Confidence 6779988643 1368999999875 45666654421 110
Q ss_pred HHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------------HHHH
Q psy208 100 LTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-----------------------------MAII 150 (443)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i~ 150 (443)
+..+...++++|+.+.|+-+|+++ ..++.+++||||||| ++|.
T Consensus 110 -------iag~~k~ei~~RV~elLelVgL~d-k~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL 181 (339)
T COG1135 110 -------LAGVPKAEIKQRVAELLELVGLSD-KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSIL 181 (339)
T ss_pred -------hcCCCHHHHHHHHHHHHHHcCChh-hhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 011223356789999999999994 678999999999999 3444
Q ss_pred HHHHHh-hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHH
Q psy208 151 WLENYL-QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKT 203 (443)
Q Consensus 151 wL~~~L-~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~ 203 (443)
-|..-+ ++.+.||++|+|-.+++..+|+|+.+|+.|++....--.+-|...+.
T Consensus 182 ~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~ 235 (339)
T COG1135 182 ELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKH 235 (339)
T ss_pred HHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcch
Confidence 444444 57899999999999999999999999999999886555566655433
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.6e-11 Score=115.51 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHH----HHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAII----WLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~----wL~~~L~~~~~tvii 165 (443)
+.++..+++.+|+.....++++.+||||||+ .+.. +|.++.++++.|||+
T Consensus 127 ~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii 206 (265)
T TIGR02769 127 KARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLF 206 (265)
T ss_pred HHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 3568888999999644568899999999999 3333 444443445789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+++.|++|++. +.|..++.
T Consensus 207 vsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 238 (265)
T TIGR02769 207 ITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQL 238 (265)
T ss_pred EeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHH
Confidence 999999999999999999999996 55776554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=121.65 Aligned_cols=80 Identities=19% Similarity=0.275 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++++.+|+.+ ..++++.+||||||| ....+|.+.| ++++.|+|+
T Consensus 112 ~~~~~~~l~~l~L~~-~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~ 190 (353)
T TIGR03265 112 AERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIM 190 (353)
T ss_pred HHHHHHHHHHcCCCc-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 458899999999985 578999999999999 3455555555 346889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+.+..+||+|+.|++|++..+ |..++
T Consensus 191 vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~ 221 (353)
T TIGR03265 191 VTHDQEEALSMADRIVVMNHGVIEQV-GTPQE 221 (353)
T ss_pred EcCCHHHHHHhCCEEEEEECCEEEEE-cCHHH
Confidence 99999999999999999999999755 55443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=114.71 Aligned_cols=81 Identities=21% Similarity=0.336 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++..+++.+|++. ..++++.+||||||+ .++.||.+.|++ .+.|+|+||
T Consensus 120 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~s 198 (242)
T PRK11124 120 ARAEKLLERLRLKP-YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVT 198 (242)
T ss_pred HHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46888899999974 568999999999999 678888888854 468999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||.+++..+|++|+.|++|++. +.|+++.+.
T Consensus 199 h~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 199 HEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred CCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 9999999999999999999996 568877653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=114.74 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh---hhCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL---QNWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L---~~~~~tviiV 166 (443)
+.++.++++.+|+.. ..++++.+||||||+ .+..++.+.| ++.+.|||+|
T Consensus 115 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~ 193 (241)
T PRK10895 115 EDRANELMEEFHIEH-LRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193 (241)
T ss_pred HHHHHHHHHHcCCHH-HhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 356788899999975 468899999999999 4555665555 3457899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||+|+.|++|++. +.|+++++.
T Consensus 194 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 194 DHNVRETLAVCERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred EcCHHHHHHhcCEEEEEeCCeEE-eeCCHHHHh
Confidence 99999999999999999999986 468877663
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=113.96 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=65.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+..++.++|++ .+.|||+|
T Consensus 115 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~ 193 (239)
T cd03296 115 AKVHELLKLVQLDW-LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV 193 (239)
T ss_pred HHHHHHHHHcCChh-hhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46778899999974 468899999999999 566777777754 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|..+.+
T Consensus 194 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 194 THDQEEALEVADRVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred eCCHHHHHHhCCEEEEEECCeEE-EecCHHHH
Confidence 99999999999999999999986 45665544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5e-11 Score=113.09 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=59.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh---hhCCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL---QNWPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L---~~~~~tviiVS 167 (443)
.++..+++.+|+.+ ..++++.+||||||+ .+...+.+.| ++.+.|+|+||
T Consensus 116 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (222)
T PRK10908 116 RRVSAALDKVGLLD-KAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMAT 194 (222)
T ss_pred HHHHHHHHHcCChh-hhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 35778889999975 468999999999999 3444444444 33468999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++..+||+|+.|++|++.-
T Consensus 195 H~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 195 HDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred CCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999854
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.6e-11 Score=120.59 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=103.7
Q ss_pred hhhhhhhhcchHHHHHHHcccccc---------C------------C--CCCcceEEecC---------CceEEEEeccc
Q psy208 8 TVSNSIFCFSSEFYCKALTLHLHL---------E------------G--GMVSGQLRIPS---------HISVLHVEQEV 55 (443)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~---------~------------~--~~~~G~i~~~~---------~~~i~~l~Q~~ 55 (443)
.+.|+++.|+....++.+++.+.+ + | .+++|+|.+.. .-++||++|++
T Consensus 8 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 87 (351)
T PRK11432 8 VLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSY 87 (351)
T ss_pred EEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCc
Confidence 456677777655555555555554 1 1 14678887532 13699999998
Q ss_pred CC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhh
Q psy208 56 VG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQK 134 (443)
Q Consensus 56 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~ 134 (443)
.. ...|+.+.+.-. +. + . ..+..+...++.++++.+|+.. ..+
T Consensus 88 ~lfp~~tv~eNi~~~------l~---------~-~-------------------~~~~~~~~~~v~~~l~~~gl~~-~~~ 131 (351)
T PRK11432 88 ALFPHMSLGENVGYG------LK---------M-L-------------------GVPKEERKQRVKEALELVDLAG-FED 131 (351)
T ss_pred ccCCCCCHHHHHHHH------Hh---------H-c-------------------CCCHHHHHHHHHHHHHHcCCch-hhc
Confidence 64 445665443211 00 0 0 0011123458889999999985 568
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
+++.+||||||| ..+.++.+.| ++++.|+|+||||.+.+..+||+|++|+
T Consensus 132 r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~ 211 (351)
T PRK11432 132 RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMN 211 (351)
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEE
Confidence 999999999999 4555555555 4457899999999999999999999999
Q ss_pred CCeeEEEcCChhH
Q psy208 185 SQRIDTYRGNYEA 197 (443)
Q Consensus 185 ~g~i~~~~G~y~~ 197 (443)
+|++... |..++
T Consensus 212 ~G~i~~~-g~~~~ 223 (351)
T PRK11432 212 KGKIMQI-GSPQE 223 (351)
T ss_pred CCEEEEE-cCHHH
Confidence 9999764 66544
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-11 Score=119.18 Aligned_cols=81 Identities=23% Similarity=0.368 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|..+|+++..+++++++||||||| .+..++.+.| ++++.|+|+
T Consensus 131 ~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~ 210 (327)
T PRK11308 131 REKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVF 210 (327)
T ss_pred HHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4578999999999765678999999999999 3444555544 335789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||..++..+||+|++|++|++..+ |.-++
T Consensus 211 iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 211 ISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999764 65443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.1e-11 Score=115.17 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=66.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 139 ~~~~~~l~~~~l~~-~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~ 217 (269)
T cd03294 139 ERAAEALELVGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFI 217 (269)
T ss_pred HHHHHHHHHcCCHh-HhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46788899999974 468999999999999 566777776643 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++.. .|..+++
T Consensus 218 tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~ 248 (269)
T cd03294 218 THDLDEALRLGDRIAIMKDGRLVQ-VGTPEEI 248 (269)
T ss_pred eCCHHHHHHhcCEEEEEECCEEEE-eCCHHHH
Confidence 999999999999999999999974 4665554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=115.30 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tviiV 166 (443)
.++.+++..+|+.+ ..++++.+||||||+ .+..++.+.|+++ +.|||+|
T Consensus 107 ~~~~~~l~~~gl~~-~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviiv 185 (255)
T PRK11248 107 EIAHQMLKKVGLEG-AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLI 185 (255)
T ss_pred HHHHHHHHHcCChh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 47888999999975 468899999999999 6777888877543 6799999
Q ss_pred ecCHHHHhccCCcEEEEe--CCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLH--SQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~--~g~i~~ 190 (443)
|||.+++..+||+|+.|+ +|++..
T Consensus 186 sH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 186 THDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred eCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 999999999999999998 488754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.3e-11 Score=115.38 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tvii 165 (443)
+.++..+++.+|+.. ..++++.+||||||+ .++.+|.+.|+++ +.|||+
T Consensus 130 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii 208 (262)
T PRK09984 130 KQRALQALTRVGMVH-FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVV 208 (262)
T ss_pred HHHHHHHHHHcCCHH-HHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999974 568999999999999 5777888877543 579999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+|++|++|++|++. +.|+++++
T Consensus 209 ~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~ 240 (262)
T PRK09984 209 TLHQVDYALRYCERIVALRQGHVF-YDGSSQQF 240 (262)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999999999995 67888776
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.9e-11 Score=113.41 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 118 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 196 (218)
T cd03255 118 RERAEELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVV 196 (218)
T ss_pred HHHHHHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 357888999999975 468899999999999 567777777754 3679999
Q ss_pred EecCHHHHhccCCcEEEEeCCee
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i 188 (443)
||||.++++ +||+|+.|++|++
T Consensus 197 ~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 197 VTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred EECCHHHHh-hhcEEEEeeCCcC
Confidence 999999998 9999999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.5e-12 Score=118.09 Aligned_cols=64 Identities=31% Similarity=0.450 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
..++...+...++..+ .||||||..++||..| ..+++++|||||.++||...+..+.+.|.++.
T Consensus 120 ~~~~~~~l~~~~i~~~-------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~ 187 (220)
T PF02463_consen 120 LKDLEELLPEVGISPE-------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELS 187 (220)
T ss_dssp HHHHHHHHHCTTTTTT-------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHT
T ss_pred cccccccccccccccc-------cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4567777887777543 8999999999999765 35789999999999999999999999998754
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.3e-11 Score=118.45 Aligned_cols=82 Identities=18% Similarity=0.352 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++.++|+.+|+++...++.+++|||||+| .+...+.+.| ++++.|+|+
T Consensus 138 ~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 138 KDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred HHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3578889999999755678999999999999 3444444444 335789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||..++..+||+|++|++|++.. .|..++.
T Consensus 218 iTHdl~~~~~~~dri~vl~~G~ive-~g~~~~i 249 (331)
T PRK15079 218 IAHDLAVVKHISDRVLVMYLGHAVE-LGTYDEV 249 (331)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999999999975 4665543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.4e-11 Score=112.48 Aligned_cols=70 Identities=21% Similarity=0.340 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.+++..+|++. ..++++.+||||||+ .+..++.++|+++ +.|||+||
T Consensus 113 ~~~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~s 191 (211)
T cd03225 113 ERVEEALELVGLEG-LRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVT 191 (211)
T ss_pred HHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 46788889999974 568999999999999 5777888877543 56999999
Q ss_pred cCHHHHhccCCcEEEEeCCe
Q psy208 168 HDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~ 187 (443)
||.+++..+||+|+.|++|+
T Consensus 192 H~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 192 HDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999998874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=116.57 Aligned_cols=152 Identities=16% Similarity=0.095 Sum_probs=99.7
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccC--CCC-chHHHHHHhccHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVV--GDD-TPAIDSVLECDTKRQNLLN 78 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~--~~~-~~~~~~~~~~~~~~~~l~~ 78 (443)
|=++|++.|.|.+.+.+.+++|+|.+.+ +-.|+|++|++. ... .++.+.+...
T Consensus 45 GKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~--------- 115 (330)
T PRK15093 45 GKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN--------- 115 (330)
T ss_pred CHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH---------
Confidence 5578889998888766556789887632 125999999974 222 2333222110
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh--hhhhccCCCCChHHHH----------
Q psy208 79 REKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP--EMQKRATKHFSGGWRK---------- 146 (443)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~--~~~~~~~~~LSGGqr~---------- 146 (443)
+. ....... . . ........++.++|+.+||.+ ..+++.+++|||||||
T Consensus 116 ----~~-~~~~~~~----------~---~--~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~ 175 (330)
T PRK15093 116 ----IP-GWTYKGR----------W---W--QRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN 175 (330)
T ss_pred ----HH-hhhcccc----------c---c--ccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence 00 0000000 0 0 000012357889999999974 3467899999999999
Q ss_pred ----------------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|+ +++.|+|+||||..++..+||+|++|++|++.. .|...++
T Consensus 176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~g~~~~i 246 (330)
T PRK15093 176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-TAPSKEL 246 (330)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 35555555553 357899999999999999999999999999964 5665443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.4e-11 Score=113.15 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++..+++.+|+.. ..++++.+||||||+ .+..++.+.|++ .+.|||+
T Consensus 122 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 200 (241)
T cd03256 122 KQRALAALERVGLLD-KAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIV 200 (241)
T ss_pred HHHHHHHHHHcCChh-hhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 356788899999974 468899999999999 566677776643 4689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|.++++
T Consensus 201 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 201 SLHQVDLAREYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-eecCHHHh
Confidence 999999999999999999999986 45777665
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-11 Score=112.57 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
+.++..+++.+|+.+ ..++.+.+|||||++ .+..|+.+.|++ .+.|||+
T Consensus 108 ~~~~~~~l~~~~l~~-~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii 186 (232)
T cd03300 108 KERVAEALDLVQLEG-YANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF 186 (232)
T ss_pred HHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 347788899999974 568899999999999 577788877754 3689999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++..+ |....
T Consensus 187 ~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~ 217 (232)
T cd03300 187 VTHDQEEALTMSDRIAVMNKGKIQQI-GTPEE 217 (232)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEEec-CCHHH
Confidence 99999999999999999999999754 55443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.1e-11 Score=114.19 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=66.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tviiVS 167 (443)
.++.+++..+|+.+ ..++++.+||||||+ .+..++.+.|++. +.|||+||
T Consensus 116 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~s 194 (256)
T TIGR03873 116 AVVDRALARTELSH-LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAAL 194 (256)
T ss_pred HHHHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46888899999974 568999999999999 5677777777543 67999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+||+|+.|++|++. ..|..+++
T Consensus 195 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 224 (256)
T TIGR03873 195 HDLNLAASYCDHVVVLDGGRVV-AAGPPREV 224 (256)
T ss_pred CCHHHHHHhCCEEEEEeCCCEE-EecCHHHh
Confidence 9999999999999999999986 45776554
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=117.38 Aligned_cols=81 Identities=16% Similarity=0.184 Sum_probs=65.4
Q ss_pred HHHHHHHHhCCCCh---hhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEE
Q psy208 117 ARASVILAGLGFTP---EMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~---~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tvii 165 (443)
.++..++..+|+.+ ...++++.+||||||+ .+..++.++|+++ +.|||+
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 124 ERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45667777778742 2457889999999999 5777888888643 479999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|++|++|++. ..|..+++
T Consensus 204 ~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 204 VTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EEecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999996 45776554
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.4e-11 Score=113.80 Aligned_cols=81 Identities=20% Similarity=0.281 Sum_probs=67.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|+++ ..++.+.+|||||++ .+..++.+.|++ .+.|+|+|
T Consensus 125 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiiv 203 (252)
T TIGR03005 125 KRAMELLDMVGLAD-KADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLV 203 (252)
T ss_pred HHHHHHHHHcCChh-HhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 46778899999974 468899999999999 566777777743 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++..+||++++|++|++. ..|+++.+.
T Consensus 204 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 204 THEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred eCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999996 457776653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=115.32 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..++..+++.+|+.. ..++++.+||||||+ .+...+.++| ++.+.|||+
T Consensus 119 ~~~~~~~l~~~gL~~-~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~till 197 (283)
T PRK13636 119 RKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197 (283)
T ss_pred HHHHHHHHHHCCChh-hhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 346888899999974 568999999999999 4554444444 334789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
||||.+++..+||+|+.|++|++. +.|.+++...
T Consensus 198 vsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 198 ATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 999999999999999999999996 5688776643
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=112.28 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=61.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++++.+|+++ ..++++.+|||||++ .+..++.+.|++ .+.|||+|
T Consensus 113 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~ 191 (213)
T cd03262 113 EERALELLEKVGLAD-KADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVV 191 (213)
T ss_pred HHHHHHHHHHcCCHh-HhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 346778889999975 468999999999999 677888888864 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCee
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i 188 (443)
|||.+++..+||+|++|++|++
T Consensus 192 sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 192 THEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred eCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999998864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=112.23 Aligned_cols=71 Identities=23% Similarity=0.326 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++..+++.+|+.+ ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 115 ~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~ 193 (214)
T TIGR02673 115 QRRVGAALRQVGLEH-KADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVA 193 (214)
T ss_pred HHHHHHHHHHcCChh-hhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 347888999999985 468899999999999 677788887754 36899999
Q ss_pred ecCHHHHhccCCcEEEEeCCe
Q psy208 167 SHDRHFLDSVPTDIFHLHSQR 187 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~ 187 (443)
|||.+++..+||+|+.|++|+
T Consensus 194 tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 194 THDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred eCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999998874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=119.74 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=96.6
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC---------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS---------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREK 81 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~---------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 81 (443)
=++|++.+.|.+.|++ |+|.+.. .-++||++|++.. ...|+.+.+....
T Consensus 67 KSTLLr~I~Gl~~p~s----G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~----------- 131 (400)
T PRK10070 67 KSTMVRLLNRLIEPTR----GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGM----------- 131 (400)
T ss_pred HHHHHHHHHcCCCCCC----CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHH-----------
Confidence 3677777777777665 8886532 1259999999754 3345544332110
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------
Q psy208 82 TITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------- 146 (443)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------- 146 (443)
.+. + +...+...++.++|+.+|+.+ ..++++.+|||||||
T Consensus 132 ----~~~-~-------------------~~~~~~~~~~~e~L~~~gL~~-~~~~~~~~LSgGq~QRv~LArAL~~~P~iL 186 (400)
T PRK10070 132 ----ELA-G-------------------INAEERREKALDALRQVGLEN-YAHSYPDELSGGMRQRVGLARALAINPDIL 186 (400)
T ss_pred ----Hhc-C-------------------CCHHHHHHHHHHHHHHcCCCh-hhhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 000 0 000112347888999999975 568999999999999
Q ss_pred -----------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|+ +.+.|||+||||.+++..+||+|+.|++|++. ..|..+++
T Consensus 187 LLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~-~~g~~~~l 252 (400)
T PRK10070 187 LMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVV-QVGTPDEI 252 (400)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEE-ecCCHHHH
Confidence 45556666553 34789999999999999999999999999996 45765554
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.3e-11 Score=120.41 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHH----HHhhhCCCeEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLE----NYLQNWPTTLL 164 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~----~~L~~~~~tvi 164 (443)
...++.++++.+|+.+ ..++.+.+||||||| ....+|. +++++++.|+|
T Consensus 126 ~~~~v~~~l~~l~L~~-~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii 204 (377)
T PRK11607 126 IASRVNEMLGLVHMQE-FAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204 (377)
T ss_pred HHHHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3457889999999985 568999999999999 3444444 55556789999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
+||||.+++..+||+|+.|++|++..+ |...+
T Consensus 205 ~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~ 236 (377)
T PRK11607 205 MVTHDQEEAMTMAGRIAIMNRGKFVQI-GEPEE 236 (377)
T ss_pred EEcCCHHHHHHhCCEEEEEeCCEEEEE-cCHHH
Confidence 999999999999999999999999865 66544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=111.11 Aligned_cols=73 Identities=21% Similarity=0.256 Sum_probs=61.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tvii 165 (443)
..++.++++.+|+.+ ..++++.+||||||+ .+..++.+.|++ ++.|||+
T Consensus 124 ~~~~~~~l~~~~l~~-~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~ 202 (228)
T PRK10584 124 RNGAKALLEQLGLGK-RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL 202 (228)
T ss_pred HHHHHHHHHHcCCHh-HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457888999999974 468899999999999 577788887743 4679999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEE
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||||.++++. ||+|+.|++|++..
T Consensus 203 ~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 203 VTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred EecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999965 99999999999853
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.26 E-value=9e-11 Score=110.74 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh----CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN----WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~----~~~tviiV 166 (443)
.++.++++.+|++. ..++++.+||||||+ .+..++.+.|++ .+.|||+|
T Consensus 110 ~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~ 188 (214)
T cd03297 110 ISVDELLDLLGLDH-LLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFV 188 (214)
T ss_pred HHHHHHHHHcCCHh-HhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 46778899999974 468899999999999 577777777743 36799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEE
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
|||.+++..+|+++++|++|++..
T Consensus 189 sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 189 THDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred ecCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 443 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-17 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 6e-09 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-16 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 3e-08 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 4e-16 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-08 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 3e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 8e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-08 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 1e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 1e-08 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-08 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-08 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-08 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-08 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 7e-08 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 8e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-08 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-07 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-07 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 2e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-07 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-07 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-07 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-07 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-07 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 6e-07 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 7e-07 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 8e-07 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 8e-07 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 9e-07 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-06 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 1e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-04 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-06 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 9e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-05 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-05 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 3e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-04 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-04 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-04 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-04 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 3e-04 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-04 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 7e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 225 bits (574), Expect = 2e-65
Identities = 73/404 (18%), Positives = 131/404 (32%), Gaps = 109/404 (26%)
Query: 26 TLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQ 85
TL + G V ++VE ++ G + + ++
Sbjct: 476 TLMRAIANGQV-DGFPTQEECRTVYVEHDIDGTHS-------------------DTSVLD 515
Query: 86 AINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWR 145
+ L GFT EM SGGW+
Sbjct: 516 FVFES---------------------GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWK 554
Query: 146 K--------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTD 179
+ + WL NYL T + +SHD FLD+V
Sbjct: 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEY 614
Query: 180 IFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASS 239
I + ++ Y+GN+ F K + E ++
Sbjct: 615 IINYEGLKLRKYKGNFTEF-----VKKCPAAKAYEELS------NTDLEFKFPEPGYLEG 663
Query: 240 VQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLG 299
V++K K + ++ ++ ++P T KP +T++
Sbjct: 664 VKTKQKAIVKVTNMEF---------QYPGTS-------------------KPQITDINFQ 695
Query: 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR- 358
+L SRI ++G NGAGK+TL+ ++ G + PT+G H N + Y QH ++ +L
Sbjct: 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDK 755
Query: 359 -CVQLLEAAFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
+ ++ F G+ +E R + A+ + + G
Sbjct: 756 TPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTP 799
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-30
Identities = 40/211 (18%), Positives = 73/211 (34%), Gaps = 16/211 (7%)
Query: 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGA 300
Q +E + P E D E + Q++E + +
Sbjct: 743 QHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINE------NDAEAMNKIFKIE 796
Query: 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---------HRNLKFGYFSQHHVD 351
RI + K T ++ G ++ + + G + H
Sbjct: 797 GTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856
Query: 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-FVGSLSGGQKSRVAFARMC 410
+ L F ++E G+ ++ + LSGGQK ++ A
Sbjct: 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
P+ +VLDEPTN+LD +++ AL KA+ ++
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 1e-29
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLKFGY 344
K +L L R I G NG GK+TL++ I RTV+
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV------ 500
Query: 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404
+H +D + + + + +E + +L FG + ++ + +LSGG K ++
Sbjct: 501 --EHDIDGTHSDTSVLDFVFES-GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKL 557
Query: 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
A AR + + L+LDEPTNHLD + L +N
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC 594
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 4e-20
Identities = 15/128 (11%), Positives = 40/128 (31%), Gaps = 31/128 (24%)
Query: 99 ELTQVFAELEAIEA----DKAPARASVILAGLGFTPE-MQKRATKHFSGGWRK------- 146
++ EA+ + + LG PE + + SGG +
Sbjct: 856 KMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAG 915
Query: 147 -------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQR 187
++ L L+ + +++++H F ++ +++ + R
Sbjct: 916 TWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGR 975
Query: 188 IDTYRGNY 195
+ N+
Sbjct: 976 MTPSGHNW 983
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 6e-35
Identities = 69/297 (23%), Positives = 118/297 (39%), Gaps = 46/297 (15%)
Query: 147 MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKL 206
+ + + L N +LVV HD LD + +D+ H+ + G Y F K K
Sbjct: 265 LKVARVIRRLANEGKAVLVVEHDLAVLDYL-SDVIHV----VYGEPGVYGIFSKPKGT-- 317
Query: 207 KNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKF 266
R + +F+ + + +V+ + ++ + ++ E E ++++
Sbjct: 318 -------------RNGINEFLQGYL----KDENVRFRPYEIRFTKLSERVDVERETLVEY 360
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
P G L I IVG NG GKTT +K++ G+
Sbjct: 361 P---------------RLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV 405
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLL-EAAFPGKPQEEYRRQ-LGGFGV 384
PT G V +L Y Q+ + + +LL + Y+ + L G+
Sbjct: 406 EEPTEGK--VEWDLTVAYKPQY--IKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI 461
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
DL + V LSGG+ RVA A + + +LDEP+ +LD+E A+ +AI
Sbjct: 462 I-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-21
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC----- 359
+ IVG NG GKTT +KI+ G + P + F + + L+
Sbjct: 119 VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRP 178
Query: 360 ------VQLLEAAFPGK-----PQEEYRRQLGGFGVSGDLAL-----QFVGSLSGGQKSR 403
V LL A GK + + + V +L L + + LSGG+ R
Sbjct: 179 VVKPQYVDLLPKAVKGKVRELLKKVDEVGKF--EEVVKELELENVLDRELHQLSGGELQR 236
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
VA A + +F DEP+++LDI + + I +
Sbjct: 237 VAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 3e-28
Identities = 53/185 (28%), Positives = 79/185 (42%), Gaps = 25/185 (13%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
S ++QL ++ GK IL + + + G NGAGKTTLL I+ T+G
Sbjct: 18 SHMLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG 76
Query: 333 TRTVH-----------RNLK--FGYFSQHHVDQLDMNLRCVQL-LEAAFP--GKPQEEYR 376
T + ++ G+ S +++ R + + + AF G Q+
Sbjct: 77 TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 377 RQ-------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429
L G+S A Q++G LS G+K RV AR M P L+LDEP LD
Sbjct: 137 EIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195
Query: 430 TIEAL 434
E+L
Sbjct: 196 ARESL 200
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 5e-28
Identities = 63/299 (21%), Positives = 103/299 (34%), Gaps = 45/299 (15%)
Query: 148 AIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEK 205
+ + ++ ++VV HD LD + TD+ H+ I Y K
Sbjct: 173 ERMNMAKAIRELLKNKYVIVVDHDLIVLDYL-TDLIHI----IYGESSVYGRVSKSYAA- 226
Query: 206 LKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLK 265
R + F+ + N R E+K + KEV
Sbjct: 227 --------------RVGINNFLKGYLPAENMKI----------RPDEIKFMLKEV----- 257
Query: 266 FPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325
D +L ++ G L A I I+G NG GKTT +I++G
Sbjct: 258 -SDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVG 316
Query: 326 IISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ-LGGF 382
I+ G+ T Y Q D ++ Q LE + + +
Sbjct: 317 EITADEGSVTPE-KQILSYKPQRIFPNYDGTVQ--QYLENASKDALSTSSWFFEEVTKRL 373
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
+ L V LSGG+ ++ A + VLD+P+++LD+E + KAI +
Sbjct: 374 NLH-RLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 23/157 (14%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----HRNLK-------FGYFSQ------- 347
+ ++G NG GKTT+LKI+ G I P G LK + YF +
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 348 --HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSR 403
H + ++ + ++ K E ++ ++ L + LSGG R
Sbjct: 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-LWNKDANILSGGGLQR 146
Query: 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ A + + + D+P+++LD+ + KAI +
Sbjct: 147 LLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE 183
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 11/164 (6%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
L + + F Y + + + ++G NG GK+TLL +++GI P G
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 335 TVHRNLKFGYFSQHHVDQ-----LDMNL--RCVQLLEAAFPGKPQEEY-RRQLGGFGVSG 386
V++++ G+ Q LD+ L R + A P + + L ++
Sbjct: 63 EVYQSI--GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT- 119
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
LA + SLSGGQ+ + AR + ++LDEPT+ LD+
Sbjct: 120 HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 69/297 (23%), Positives = 113/297 (38%), Gaps = 46/297 (15%)
Query: 147 MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKL 206
+ L ++LVV HD LD + +DI H+ + G Y F + K
Sbjct: 195 LNAARAIRRLSEEGKSVLVVEHDLAVLDYL-SDIIHV----VYGEPGVYGIFSQPK---- 245
Query: 207 KNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKF 266
+ I+ F + +V+ + +++ + +E E E ++ +
Sbjct: 246 ---------------GTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTY 290
Query: 267 PDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326
P G L I IVG NG GKTT +K++ G+
Sbjct: 291 P---------------RLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGV 335
Query: 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ--LGGFGV 384
PT G + +L Y Q+ + D +LL K + + L G+
Sbjct: 336 EEPTEG--KIEWDLTVAYKPQYI--KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI 391
Query: 385 SGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441
DL + V LSGG+ RVA A + + +LDEP+ +LD+E A+ +AI
Sbjct: 392 I-DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 4e-15
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 21/153 (13%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRNLKF-------GYFSQHHVDQLDMN 356
+ IVG NG GK+T +KI+ G + P + ++ YF + ++
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 357 LRC--VQLLEAAFPGKPQEEYRRQ---------LGGFGVSGDLALQFVGSLSGGQKSRVA 405
++ V L+ A GK E ++ + + ++ + + LSGG+ RVA
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVA 168
Query: 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
A + F DEP+++LDI +AI
Sbjct: 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAI 201
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 4e-22
Identities = 39/199 (19%), Positives = 68/199 (34%), Gaps = 11/199 (5%)
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRI 306
+ E + + S + + G +L + +
Sbjct: 322 IPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEIL 381
Query: 307 CIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCV--QLLE 364
++G+NG GKTTL+K++ G + P G L Q + QL
Sbjct: 382 VMMGENGTGKTTLIKLLAGALKPDEGQ--DIPKLNVSMKPQK----IAPKFPGTVRQLFF 435
Query: 365 AAFPGKPQEEYRRQ--LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
G+ + + + D+ Q V LSGG+ RVA + ++DEP
Sbjct: 436 KKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEP 494
Query: 423 TNHLDIETIEALGKAINKY 441
+ +LD E K I ++
Sbjct: 495 SAYLDSEQRIICSKVIRRF 513
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 6e-18
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 30/163 (18%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------RTVHRNLKFGYFSQ--- 347
+ +VG NG GK+T LKI+ G P G + +N
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 348 -----HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----QFVGSLS 397
+VD + ++ E+ + L L + + LS
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDV--KRYIKILQLENVLKRDIEKLS 223
Query: 398 GGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
GG+ R A C+ + + DEP+++LD++ + I
Sbjct: 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS 266
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 3e-21
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 56/208 (26%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
IL++ E+N+ Y G L + + I+G NG GK+TL + GI+ P++G
Sbjct: 4 EDYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG 63
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCV-------------QLLEA------AF-P---G 369
+D + + QL A +F
Sbjct: 64 RILFD---------NKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK 114
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVL 419
P++E R+++ D AL+ G LS GQK RVA A + + P L+L
Sbjct: 115 LPEDEIRKRV-------DNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLIL 167
Query: 420 DEPTNHLD-------IETIEALGKAINK 440
DEPT LD ++ + + K +
Sbjct: 168 DEPTAGLDPMGVSEIMKLLVEMQKELGI 195
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 7e-21
Identities = 40/173 (23%), Positives = 58/173 (33%), Gaps = 26/173 (15%)
Query: 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++QL +V L + + +VG NGAGK+TLL + G+ G+
Sbjct: 2 SIVMQLQDVA-----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 55
Query: 334 RTVH-RNL----------KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF 382
+ L Y SQ + L E G
Sbjct: 56 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTL-HQHDKTRTELLNDVAGAL 114
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMC-------MAAPNFLVLDEPTNHLDI 428
+ D + LSGG+ RV A + A L+LDEP N LD+
Sbjct: 115 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-17
Identities = 46/190 (24%), Positives = 71/190 (37%), Gaps = 61/190 (32%)
Query: 277 LQLSEVNFEYVPGKPI----LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++ V+ + G P+ L NV L + + G+ G+GK+TLL+I+ G+I PT+G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 333 TRTVHRNLKFGYFSQHHVDQLDMNLRCV-------------QLLEA------AF-P---G 369
D + Q AF
Sbjct: 63 DVLY--------------DGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY 108
Query: 370 KPQEEYRRQLGGFGVSGDLALQFVG------------SLSGGQKSRVAFARMCMAAPNFL 417
++ V A++FVG LSGG+K RVA A + + P+ L
Sbjct: 109 PDRDPVPL------V--KKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160
Query: 418 VLDEPTNHLD 427
+LDEP LD
Sbjct: 161 ILDEPLVGLD 170
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 3e-17
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 14/142 (9%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGTRTVH-RNL-----KFGYFSQHHVDQLDMNLRCVQLL 363
G NG GKTTLLK I + P G + + K + + + + L
Sbjct: 42 GPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE--IIVPRKISVEDYL 99
Query: 364 E--AAFPGKPQEEYR--RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419
+ A+ G + L V + +G LS G RV A + VL
Sbjct: 100 KAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157
Query: 420 DEPTNHLDIETIEALGKAINKY 441
D+P +D ++ + K+I +
Sbjct: 158 DDPVVAIDEDSKHKVLKSILEI 179
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 1e-16
Identities = 35/172 (20%), Positives = 65/172 (37%), Gaps = 32/172 (18%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLE---SRICIVGDNGAGKTTLLKIIMGIISPTAG 332
++QL V GK LE ++ I+G NG+GKTTLL+ I G++ P +G
Sbjct: 1 MIQLKNVGITL-SGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 333 T--------RTVHRNLK-----FGYFSQHHVDQLDMNLRCVQLLEAAFP----GKPQEEY 375
R + ++ + + + + G ++ +
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIG------VTVNDI----VYLYEELKGLDRDLF 108
Query: 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
L + ++ + + LS GQ V + + P + LDEP ++D
Sbjct: 109 LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 2e-16
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 23/143 (16%)
Query: 310 GDNGAGKTTLLKIIMGIISPTAGT------------RTVHRNLKFGYFSQHHVDQLDMNL 357
G NGAGKTT L+II +I P++G V + + Y + N+
Sbjct: 48 GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI--SYLPEEA--GAYRNM 103
Query: 358 RCVQLLE--AAFPGKPQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411
+ ++ L A F E G+ + V + S G ++ AR M
Sbjct: 104 QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALM 162
Query: 412 AAPNFLVLDEPTNHLDIETIEAL 434
P +LDEPT+ LD+ +
Sbjct: 163 VNPRLAILDEPTSGLDVLNAREV 185
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 4e-14
Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 54/187 (28%)
Query: 271 LLSPPILQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP 329
++S +L++ ++ Y G + + L + ++G NGAGKTT L I G++
Sbjct: 1 MVSDIVLEVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 330 TAGT---------------------------R------TVHRNLKFGYFSQHHVDQLDMN 356
G R TV+ NL G +++ + + +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 357 LRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416
L + L FP +E +QLG G+LSGG++ +A R M+ P
Sbjct: 119 LEWIFSL---FP--RLKERLKQLG-------------GTLSGGEQQMLAIGRALMSRPKL 160
Query: 417 LVLDEPT 423
L++DEP+
Sbjct: 161 LMMDEPS 167
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 2e-12
Identities = 48/200 (24%), Positives = 72/200 (36%), Gaps = 71/200 (35%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+L V+F Y + IL ++ A S I G +G GK+T+ ++ PTAG T
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG--------------- 380
+ D + + L E +R Q+G
Sbjct: 61 I--------------D--GQPIDNISL----------ENWRSQIGFVSQDSAIMAGTIRE 94
Query: 381 --GFGVSGDL-------------ALQFVGS---------------LSGGQKSRVAFARMC 410
+G+ GD A FV + +SGGQ+ R+A AR
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154
Query: 411 MAAPNFLVLDEPTNHLDIET 430
+ P L+LDE T LD E+
Sbjct: 155 LRNPKILMLDEATASLDSES 174
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 49/197 (24%), Positives = 74/197 (37%), Gaps = 60/197 (30%)
Query: 277 LQLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+ + F Y P P IL N+ L I IVG +G+GK+TL K+I P G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 334 -----------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
R++ N+ M++ +++
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA--------NPGMSVE--KVIY 117
Query: 365 AA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417
AA F + +E Y +G G LSGGQ+ R+A AR + P L
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAG----------LSGGQRQRIAIARALVNNPKIL 167
Query: 418 VLDEPTNHLDIETIEAL 434
+ DE T+ LD E+ E +
Sbjct: 168 IFDEATSALDYES-EHV 183
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 49/184 (26%), Positives = 78/184 (42%), Gaps = 39/184 (21%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT- 333
IL+ + + IL + L + I+G +G+GK+TLL I+ + +PT G
Sbjct: 3 EILRAENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 334 --------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQ--LLEAAFPGKPQEEYR 376
++ RN K G+ F H+ L L ++ ++ GKP++E +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHY---LIPELTALENVIVPMLKMGKPKKEAK 118
Query: 377 RQLGGFGVSGDLALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ G+ L +G LSGG++ RVA AR P L DEPT +L
Sbjct: 119 ER-------GEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 427 DIET 430
D
Sbjct: 172 DSAN 175
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 59/232 (25%)
Query: 247 LERLPELKPIEKEVEVVLKFPDTELLSPP--ILQLSEVNFEYVPGKPILTNVCLGATLES 304
+E + +L +++E EV P L ++ V+F Y G+ L +V
Sbjct: 25 MENMFDL--LKEETEVKDL-PGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQ 81
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGT--------RTV-----HRNLKFGYFSQHHV- 350
+ +VG +GAGK+T+L+++ ++G V ++ G Q V
Sbjct: 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI--GVVPQDTVL 139
Query: 351 --DQLDMNLR-------CVQLLEAA-----------FPGKPQEEYRRQLG--GFGVSGDL 388
D + N+R ++ AA FP E YR Q+G G +SG
Sbjct: 140 FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFP----EGYRTQVGERGLKLSG-- 193
Query: 389 ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
G+K RVA AR + AP ++LDE T+ LD A+ ++ K
Sbjct: 194 ----------GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-10
Identities = 61/474 (12%), Positives = 137/474 (28%), Gaps = 139/474 (29%)
Query: 23 KALTLHLHLEGGMV-SGQLRIPSHISVLHVEQEVVGDDTPAID--------SVLECDTKR 73
K + + G++ SG+ + + ++ V ++ C++
Sbjct: 151 KNVLID-----GVLGSGK-------TWVALD--VCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 74 QNLLNREKTITQAINNGTA----DANMSTELTQVFAELEAIEADKAPARASVILAGLGFT 129
L +K + Q N T+ +N+ + + AEL + K ++L +
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--- 253
Query: 130 PEMQKRATKHFSGGWRKMAIIWLENYLQNWPTTLLVVSHDRHFLDSV----PTDIFHLHS 185
+A F+ + +L+ + + D + T I H
Sbjct: 254 --QNAKAWNAFNLSCK-----------------ILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 186 QRIDTYRGNYEAFDK---IKTEKLKNQQREIE--AQRMHREHVQKFIDTF----RYNANR 236
T K + + L + + E ++ + T+ N ++
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 237 ASSV-QSKIKQLERLP-ELKPIEKEVEVVLKFPDTELLSPPILQL--SEVNFEYVPGKPI 292
+++ +S + LE P E + + + V FP + + +L L +V V +
Sbjct: 355 LTTIIESSLNVLE--PAEYRKMFDRLSV---FPPSAHIPTILLSLIWFDVIKSDVM--VV 407
Query: 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL--------KF-- 342
+ L + ++ I + + +HR++ F
Sbjct: 408 VN------KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 343 ---------GYFSQH---HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL 390
YF H H+ ++ R + L F L
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPER-MTLFRMVF--------------------LDF 500
Query: 391 QFVGSLSGGQKSRVAFARMCMAAP------------NFLVLDEPTNHLDIETIE 432
+F+ QK R + ++ ++P + I
Sbjct: 501 RFL-----EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 69/236 (29%)
Query: 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK--------------IKTEKLK---NQQ 210
H H +D + Q D +AF + E++ +
Sbjct: 2 HHHHHMD---FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 211 REIEAQRM--------HREHVQKFI-DTFRYNANRASSVQSKIKQLERLPELKPIEKEVE 261
+ E VQKF+ + R N + S IK +R P + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 262 VVLKFPDTELLSP-------PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGA 314
+ D ++ + P L+L + E P K + I G G+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK--------------NVLIDGVLGS 161
Query: 315 GKTTLLKIIMGIISPTAGTRTVHRNLKFGYF------SQHHVDQLDM--NLRCVQL 362
GKT + + V + F F L+M L Q+
Sbjct: 162 GKTWV-------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL-LYQI 209
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 48/198 (24%)
Query: 277 LQLSEVNFEYV--PGKPILTNVCL----GATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
L+ ++F Y IL + L G T + +VG++G GK+T ++++ + P
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQT----VALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 331 AGTRTV-HRNLK----------FGYFSQHHV---DQLDMNLRC-------VQLLEAA--- 366
G ++ ++++ G SQ V + N+R ++ +A
Sbjct: 444 DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEA 503
Query: 367 ----FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422
F K ++ +G G LSGGQK R+A AR + P L+LDE
Sbjct: 504 NAYDFIMKLPHQFDTLVGERGAQ----------LSGGQKQRIAIARALVRNPKILLLDEA 553
Query: 423 TNHLDIETIEALGKAINK 440
T+ LD E+ + A++K
Sbjct: 554 TSALDTESEAVVQAALDK 571
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 88/259 (33%)
Query: 233 NANRASSVQSKIKQL-ERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEY--VPG 289
+ +A+ S I ++ E+ PE+ + +Q S V F Y P
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGN-------VQFSGVVFNYPTRPS 1045
Query: 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV-HRNLKFGYFSQH 348
P+L + L + +VG +G GK+T+++++ P AG+ + + +K
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIK------- 1098
Query: 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----------------GFGVSGDL--- 388
+N++ R QLG +G + +
Sbjct: 1099 -----QLNVQ---------------WLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY 1138
Query: 389 -----------ALQFVGS---------------LSGGQKSRVAFARMCMAAPNFLVLDEP 422
QF+ S LSGGQK R+A AR + P+ L+LDE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEA 1198
Query: 423 TNHLDIET----IEALGKA 437
T+ LD E+ EAL KA
Sbjct: 1199 TSALDTESEKVVQEALDKA 1217
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 6e-10
Identities = 39/174 (22%), Positives = 54/174 (31%), Gaps = 43/174 (24%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGT----------------------RT---------- 335
I+G NG+GK+TL+ +I G + G RT
Sbjct: 38 IIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 97
Query: 336 -VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVG 394
V NL G + + E E+ + L +S L + G
Sbjct: 98 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEM----VEKAFKILEFLKLS-HLYDRKAG 152
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPT---NHLDIETIEALGKAINK--YTF 443
LSGGQ V R M P +V+DEP I + TF
Sbjct: 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITF 206
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 52/180 (28%), Positives = 76/180 (42%), Gaps = 25/180 (13%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++L V Y G+ L NV L + I+G +G+GK+T+L II + PT G
Sbjct: 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 333 T---------------RTVHRNLKFGY-FSQHHVDQLDMNLRCVQL--LEAAFPGKPQEE 374
T R K G+ F Q ++ L L V+L + EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 375 YRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
R++ L + A LSGGQ+ RVA AR P ++ D+PT LD +T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKT 180
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 36/161 (22%), Positives = 55/161 (34%), Gaps = 68/161 (42%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
++G GAGK+ L++I GI+ P G R +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR---------QLGGFGVSG 386
V+RN+ +G LR + E R +
Sbjct: 87 VYRNIAYG-------------LR----------NVERVERDRRVREMAEKLGIAHL---- 119
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ LSGG++ RVA AR + P L+LDEP + +D
Sbjct: 120 --LDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 46/169 (27%), Positives = 70/169 (41%), Gaps = 52/169 (30%)
Query: 308 IVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMN-LRCVQ----- 361
++G +GAGK+TL++ + + PT G+ V + L + L +
Sbjct: 59 VIGASGAGKSTLIRCVNLLERPTEGSVLVD---------GQELTTLSESELTKARRQIGM 109
Query: 362 ------LLEA-------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG---------- 394
LL + A P P++E +R++ L VG
Sbjct: 110 IFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTEL-------LSLVGLGDKHDSYPS 162
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET---IEALGKAINK 440
+LSGGQK RVA AR + P L+ D+ T+ LD T I L K IN+
Sbjct: 163 NLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR 211
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 47/233 (20%), Positives = 80/233 (34%), Gaps = 55/233 (23%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVP-GK 290
N + Q + + L + ++ E E ++ L+ V F Y
Sbjct: 302 TNVNAQFQRGMAACQTLFAI--LDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGREV 356
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT----------------R 334
P L N+ L + +VG +G+GK+T+ +I G R
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416
Query: 335 ---------------TVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRR 377
TV N+ + ++ +Q++ R ++
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG----LDT 472
Query: 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
+G GV LSGGQ+ R+A AR + L+LDE T+ LD E+
Sbjct: 473 IIGENGVL----------LSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVPGKP 291
+N+ + +Q + ER+ E+ +E+E + PD L ++ V F Y KP
Sbjct: 314 SNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKP 369
Query: 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
+L ++ ++ +VG G+GKTT++ ++M
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 45/245 (18%), Positives = 80/245 (32%), Gaps = 79/245 (32%)
Query: 234 ANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLSEVNFEYVPG-K 290
+ S Q + + L L ++ E E + + +V F Y K
Sbjct: 302 TSVTSEFQRGMAACQTLFGL--MDLETERD---NGKYEAERVNGEVDVKDVTFTYQGKEK 356
Query: 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHV 350
P L++V + +VG +G+GK+T+ + +G+ +
Sbjct: 357 PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC--------------L 402
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLG-----------------GFGVSGDL----- 388
D ++R +L RR + G+
Sbjct: 403 D--GHDVRDYKL----------TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQI 450
Query: 389 --------ALQFVGSL---------------SGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
A++F+ ++ SGGQ+ RVA AR + L+LDE T+
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSA 510
Query: 426 LDIET 430
LD E+
Sbjct: 511 LDTES 515
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 33/152 (21%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--------HRNL-----KFGYFSQH--- 348
+ ++G +G+GK+T L+ + + G + NL + G Q
Sbjct: 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL 111
Query: 349 --HVDQLD------MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ 400
H+ L+ M +R +A + + L G+ D A + SLSGGQ
Sbjct: 112 FPHMTVLNNITLAPMKVRKWPREKA------EAKAMELLDKVGLK-DKAHAYPDSLSGGQ 164
Query: 401 KSRVAFAR-MCMAAPNFLVLDEPTNHLDIETI 431
RVA AR + M P ++ DEPT+ LD E +
Sbjct: 165 AQRVAIARALAM-EPKIMLFDEPTSALDPEMV 195
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 39/163 (23%), Positives = 67/163 (41%), Gaps = 49/163 (30%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHVD----Q 352
I I+G +G+GK+T L+ I + P+ G V+ ++ + ++ + +
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 94
Query: 353 LDM-----NLRCVQLLEAAFP----------------GKPQEEYRRQ----LGGFGVSGD 387
L M NL + G + + R + L G+
Sbjct: 95 LTMVFQHFNL---------WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDER 145
Query: 388 LALQFVGSLSGGQKSRVAFAR-MCMAAPNFLVLDEPTNHLDIE 429
++ LSGGQ+ RV+ AR + M P+ L+ DEPT+ LD E
Sbjct: 146 AQGKYPVHLSGGQQQRVSIARALAM-EPDVLLFDEPTSALDPE 187
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 63/207 (30%)
Query: 267 PDTELLSPPILQ----LSEVNFEY--VPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320
P + L+P ++ +V+F Y P +L + +VG NG+GK+T+
Sbjct: 3 PLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA 62
Query: 321 KII-----------------------------MGIIS--PTAGTRTVHRNLKFGYFSQHH 349
++ + + P R+ N+ +G
Sbjct: 63 ALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYG------ 116
Query: 350 VDQLDMNLRCVQLLEAA-------FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402
L ++ A F + Y ++G G LSGGQ+
Sbjct: 117 ---LTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ----------LSGGQRQ 163
Query: 403 RVAFARMCMAAPNFLVLDEPTNHLDIE 429
VA AR + P L+LD T+ LD
Sbjct: 164 AVALARALIRKPRLLILDNATSALDAG 190
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 46/187 (24%), Positives = 72/187 (38%), Gaps = 52/187 (27%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPT 330
++ V Y G + V + + ++G +G+GKTT+L++I G+ PT
Sbjct: 11 GSMTIEFVGVEKIYPGGARSVRGVSF--QIREGEMVGLLGPSGSGKTTILRLIAGLERPT 68
Query: 331 AGT---------------R---------------TVHRNLKFGYFSQHHVDQLDMNLRCV 360
G R TV+ N+ FG + V + +M+ R
Sbjct: 69 KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFG-LREKRVPKDEMDARVR 127
Query: 361 QLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420
+LL +L + A +F LSGGQ+ RVA AR P L+ D
Sbjct: 128 ELLRFM-----------RLESY------ANRFPHELSGGQQQRVALARALAPRPQVLLFD 170
Query: 421 EPTNHLD 427
EP +D
Sbjct: 171 EPFAAID 177
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 44/192 (22%), Positives = 75/192 (39%), Gaps = 49/192 (25%)
Query: 272 LSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT 330
L+ + + V + G P+L ++ + + G GAGKT+LL +IMG + P+
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 331 AGT------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGK 370
G T+ N+ FG + + ++ QL E + F
Sbjct: 62 EGKIKHSGRISFCSQFSWIMPGTIKENIIFG--VSYDEYRYRSVIKACQLEEDISKFAE- 118
Query: 371 PQEEYRRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
D + +G +LSGGQ++R++ AR + +LD P +L
Sbjct: 119 ---------------KDNIV--LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 427 DIETIEALGKAI 438
D+ T K I
Sbjct: 162 DVLT----EKEI 169
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 47/185 (25%)
Query: 278 QLSEVNFEYVPGKP-ILTNVCLGATLESRICIVGDNGAGKTTLL-----------KII-- 323
+ ++ +Y G IL N+ + R+ ++G G+GK+TLL +I
Sbjct: 21 TVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQID 80
Query: 324 ---------------MGII--SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366
G+I + T +NL + H ++ V L
Sbjct: 81 GVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADEVGLRSV- 137
Query: 367 FPGKPQE-EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425
P + ++ GG LS G K + AR ++ L+LDEP+ H
Sbjct: 138 IEQFPGKLDFVLVDGG------------CVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 426 LDIET 430
LD T
Sbjct: 186 LDPVT 190
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 45/211 (21%), Positives = 76/211 (36%), Gaps = 57/211 (27%)
Query: 257 EKEVEVVLKFPDTELLSPPILQLSEVNFE--YVPGKPILTNVCLGATLESRICIVGDNGA 314
E E+ K ++F + G P+L ++ + + G GA
Sbjct: 16 EGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGA 75
Query: 315 GKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA-AFP----- 368
GKT+LL +IMG + P+ G + + + + SQ + P
Sbjct: 76 GKTSLLMMIMGELEPSEG--KIKHSGRISFCSQ----------------NSWIMPGTIKE 117
Query: 369 ---GKPQEEYR--------------RQLGGFGVSGDLALQFVG----SLSGGQKSRVAFA 407
G +EYR + D + +G +LSGGQ++R++ A
Sbjct: 118 NIIGVSYDEYRYRSVIKACQLEEDISKFAE----KDNIV--LGEGGITLSGGQRARISLA 171
Query: 408 RMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
R + +LD P +LD+ T K I
Sbjct: 172 RAVYKDADLYLLDSPFGYLDVLT----EKEI 198
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 45/157 (28%)
Query: 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+ + F + P L + + + +VG G GK++LL ++ + G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 334 ----------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEY 375
++ N+ FG Q ++ LL P
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALLPDLEILPS------ 115
Query: 376 RRQLGGFGVSGDLALQFVG----SLSGGQKSRVAFAR 408
GD +G +LSGGQK RV+ AR
Sbjct: 116 ----------GDRTE--IGEKGVNLSGGQKQRVSLAR 140
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGG++ R+A AR + P ++ DE T+ LD +T KA+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 35/158 (22%), Positives = 52/158 (32%), Gaps = 63/158 (39%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGT---------------R---------------T 335
I+G GAGKT L++I G P +G
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMN 88
Query: 336 VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR------QLGGFGVSGDLA 389
V +NL+FG +R + ++
Sbjct: 89 VKKNLEFG-------------MR--------MKKIKDPKRVLDTARDLKIEHL------L 121
Query: 390 LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ +LSGG++ RVA AR + P L+LDEP + LD
Sbjct: 122 DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 46/210 (21%), Positives = 77/210 (36%), Gaps = 49/210 (23%)
Query: 267 PDTELLSPPILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
+ V F Y P+L+ V S + ++G+ G+GK+TL+ +I
Sbjct: 332 ALALPNVEGSVSFENVEFRY-FENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP 390
Query: 325 GIISPTAGTRTVH----RNL-------KFGYFSQHHV-------DQLDMNLR-------- 358
+I P G V R + Q V + NL+
Sbjct: 391 RLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKE----NLKWGREDATD 446
Query: 359 --CVQLLEAA----FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412
V+ + A F E Y ++ G + SGGQK R++ AR +
Sbjct: 447 DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN----------FSGGQKQRLSIARALVK 496
Query: 413 APNFLVLDEPTNHLDIETIEALGKAINKYT 442
P L+LD+ T+ +D T + + + +YT
Sbjct: 497 KPKVLILDDCTSSVDPITEKRILDGLKRYT 526
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 57/189 (30%)
Query: 275 PILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332
L + ++ + P+L ++ L +L+ + I+G +G GKTTLL+ + G P +G
Sbjct: 3 AALHIGHLSKSF-QNTPVLNDISL--SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG 59
Query: 333 T-------------------R---------------TVHRNLKFGYFSQHHVDQLDMNLR 358
R TV+RN+ +G R
Sbjct: 60 EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG-LGNGKGRTAQERQR 118
Query: 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV 418
+LE + A ++ LSGGQ+ R A AR P ++
Sbjct: 119 IEAMLE-----------LTGISEL------AGRYPHELSGGQQQRAALARALAPDPELIL 161
Query: 419 LDEPTNHLD 427
LDEP + LD
Sbjct: 162 LDEPFSALD 170
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
LSGGQK R++ AR+ + P L+LDE T+ LD+E+ + +A++
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 223 VQKFIDTFRYNANRASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPI--LQLS 280
++ R +++ ++R+ +L I+++ ++ + + + +
Sbjct: 287 LELLFGPLRRLVASFTTLTQSFASMDRVFQL--IDEDYDIKNG-VGAQPIEIKQGRIDID 343
Query: 281 EVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324
V+F+Y + PIL ++ L + VG +G GK+TL+ +I
Sbjct: 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 59/160 (36%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365
I+G +GAGKTT ++II G+ P+ G L F D+ + ++
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGE------LYFD-------DR-LVASNGKLIVPP 79
Query: 366 ------------------------AFP----GKPQEEYRRQLGGFGVSGDLALQFVG--- 394
AFP +EE R+++ + + +
Sbjct: 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-------EEVAKILDIHH 132
Query: 395 -------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
LSG Q+ RVA AR + P+ L+LDEP ++LD
Sbjct: 133 VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 6e-05
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFA--- 407
+ + + EE + +L + L F LSGG++ + A
Sbjct: 207 ELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTF---LSGGERIALGLAFRL 263
Query: 408 ---RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ L+LDEPT +LD E L + +
Sbjct: 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 393 VGSLSGGQKSRVAFA------RMCMAAP-NFLVLDEPTNHLDIETIEALGKAINK 440
+ +LSGG++ VA + + ++LDEPT +LD L + K
Sbjct: 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK 332
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 40.2 bits (95), Expect = 3e-04
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E RI I+G +GAGKTT+L + PT G TV ++NLKF
Sbjct: 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKF 53
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 4e-04
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 391 QFVGSLSGGQKSRVAFA------RMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ + LSGG++ + A + L+LDEPT +LD E L + +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 108
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 5e-04
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E ++ IVG + AGKTT+L SPT G + N +F
Sbjct: 21 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRF 67
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGI----ISPTAG--TRTV-HRNLKF 342
E R+ ++G + AGKTT+LK G ISPT G +T+ HR K
Sbjct: 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKL 64
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
E RI I+G +GAGKTT+L + PT G T+ ++NLK
Sbjct: 18 ELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKL 64
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGI----ISPTAG--TRTV-HRNLKF 342
E RI ++G + AGKTTLLK + I+PT G ++V + K
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAG--TRTV-HRNLKF 342
+ RI +VG + AGKTT+L + PT G TV ++N+ F
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICF 75
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.97 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.95 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.94 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.93 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.85 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.83 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.81 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.78 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.78 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.69 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.68 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.68 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.68 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.67 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.66 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.64 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.63 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.63 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.61 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.6 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.55 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.51 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.46 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.46 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.45 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.45 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.42 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.42 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.42 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.42 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.41 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.41 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.4 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.39 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.39 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.38 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.38 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.38 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.38 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.37 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.37 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.37 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.36 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.36 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.36 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.36 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.35 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.35 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.35 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.34 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.34 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.33 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.32 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.32 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.32 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.31 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.31 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.31 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.31 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.3 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.3 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.29 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.27 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.27 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.26 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.22 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.22 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.22 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.21 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.21 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.2 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.19 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.18 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.16 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.15 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.15 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.14 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.14 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.14 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.12 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.11 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.11 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.1 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.1 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.09 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.09 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.08 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.07 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.07 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.07 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.07 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.05 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.05 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.04 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.04 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.03 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.03 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.98 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.94 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.93 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 98.91 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.91 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 98.89 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 98.87 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 98.86 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.83 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 98.83 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.83 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.82 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 98.82 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.82 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.82 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.79 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.77 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.77 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.76 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.75 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.7 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.66 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.63 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.62 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.62 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.58 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.51 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.5 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.48 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.44 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.42 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.34 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.31 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.28 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.28 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.27 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.25 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.25 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.22 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.2 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.18 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.13 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.12 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 98.12 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.08 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.07 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.06 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.06 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.05 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.03 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.01 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.01 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.01 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.0 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.98 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.97 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.94 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.93 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.92 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.9 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 97.9 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.88 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.87 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.85 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.84 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.83 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.83 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.78 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.76 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.71 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.66 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.64 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.63 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.62 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.58 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 97.57 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.55 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.52 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.46 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.45 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.41 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.39 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.38 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.36 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.36 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.36 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.35 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.35 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.34 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.33 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.26 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.24 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.23 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.22 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.21 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.21 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.16 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.15 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.12 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.09 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.09 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.08 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.07 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.04 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.01 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.0 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.99 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.84 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.82 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.78 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.77 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.75 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 96.74 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.72 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.72 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.7 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.7 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.65 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.62 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.59 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.57 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.54 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.54 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.53 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.52 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.51 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.5 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 96.5 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.46 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.45 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.43 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.37 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.36 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.35 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.33 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.32 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.31 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.3 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.25 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.23 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.22 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.21 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.2 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.2 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.2 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.2 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.17 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.17 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.17 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.14 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.14 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.11 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.11 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.11 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.1 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.09 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.08 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.07 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.07 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.07 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.06 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.06 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.06 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.05 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.05 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.04 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.04 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.02 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.02 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.02 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.01 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.0 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.98 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.97 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.96 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.96 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.95 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.93 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.93 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.93 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.93 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.92 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.91 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.9 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.89 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 95.89 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.87 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.86 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 95.85 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.84 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.83 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.83 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.83 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.81 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.81 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 95.8 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 95.8 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.79 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.75 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.75 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.75 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 95.73 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.72 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 95.72 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 95.72 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.72 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.71 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.7 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 95.69 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.68 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.68 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 95.68 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.67 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.65 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 95.64 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 95.63 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.61 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 95.6 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 95.6 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 95.59 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 95.58 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.57 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.57 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.56 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.56 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 95.56 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 95.55 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 95.54 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 95.54 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.53 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 95.52 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 95.5 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 95.49 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 95.49 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 95.49 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 95.48 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 95.48 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 95.47 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 95.47 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 95.47 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 95.46 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 95.46 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 95.45 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 95.43 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 95.42 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 95.42 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.42 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 95.42 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 95.41 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 95.4 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 95.4 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 95.4 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.39 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 95.38 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 95.36 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 95.35 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 95.35 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 95.35 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 95.34 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 95.33 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 95.31 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 95.3 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 95.29 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 95.28 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.27 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 95.27 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.27 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.24 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 95.24 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.24 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 95.24 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 95.23 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 95.23 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 95.2 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 95.19 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 95.14 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 95.14 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 95.13 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.13 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.13 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.06 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.06 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 95.05 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.02 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 95.01 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 94.98 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.94 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 94.94 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 94.94 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.91 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 94.91 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.9 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.88 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.88 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 94.88 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.86 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 94.85 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 94.84 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 94.79 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.78 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.75 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.75 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.7 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.7 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 94.69 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.68 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 94.67 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.65 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 94.64 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 94.6 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.56 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.55 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 94.47 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.46 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 94.46 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 94.45 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 94.39 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.3 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 94.29 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.28 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=422.47 Aligned_cols=280 Identities=30% Similarity=0.572 Sum_probs=217.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhCCCeEEEEecC
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNWPTTLLVVSHD 169 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~~~tviiVSHD 169 (443)
+.++..+|..+||+....++++.+||||||| .++.||.++|++.++|||+||||
T Consensus 525 ~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHd 604 (986)
T 2iw3_A 525 KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHD 604 (986)
T ss_dssp HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSC
T ss_pred HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECC
Confidence 4689999999999755679999999999999 78999999998778899999999
Q ss_pred HHHHhccCCcEEEEeCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy208 170 RHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQLER 249 (443)
Q Consensus 170 r~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 249 (443)
++++..+||+|++|++|++..|.|++++|........ .. ..
T Consensus 605 l~~l~~~adrii~L~~G~iv~~~G~~~e~~~~~~~~~------------------~~---------------------~~ 645 (986)
T 2iw3_A 605 SVFLDNVCEYIINYEGLKLRKYKGNFTEFVKKCPAAK------------------AY---------------------EE 645 (986)
T ss_dssp HHHHHHHCSEEEEEETTEEEEEESCHHHHHHHCGGGG------------------GS---------------------SS
T ss_pred HHHHHHhCCEEEEEECCeeecCCCCHHHHHhhhHHHH------------------HH---------------------Hh
Confidence 9999999999999999999878999988753211000 00 00
Q ss_pred CCCCCCCccccccccccCCC------CCCCCCeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHH
Q psy208 250 LPELKPIEKEVEVVLKFPDT------ELLSPPILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKI 322 (443)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~ 322 (443)
+.. . ...+.++.+ ...++++|+++|++|+|++. +++|+|+||+|.+|++++|+||||||||||+|+
T Consensus 646 l~~-~------~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLkl 718 (986)
T 2iw3_A 646 LSN-T------DLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718 (986)
T ss_dssp TTT-C------CCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHH
T ss_pred hhh-h------hhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 000 0 000111110 11235689999999999642 679999999999999999999999999999999
Q ss_pred HHcCCCCCCceEEEcCceEEEEeccCccccc--ccchhHHHHHH------------------------------------
Q psy208 323 IMGIISPTAGTRTVHRNLKFGYFSQHHVDQL--DMNLRCVQLLE------------------------------------ 364 (443)
Q Consensus 323 l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l--~~~~~~~~~~~------------------------------------ 364 (443)
|+|+++|++|+|.++++..++|++|++...+ ....++.+.+.
T Consensus 719 LaGll~P~sG~I~~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~ 798 (986)
T 2iw3_A 719 LTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGT 798 (986)
T ss_dssp HTTSSCCSEEEEEECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTE
T ss_pred HhCCCCCCceEEEEcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccc
Confidence 9999999999999987778999998642100 00001111000
Q ss_pred -----------------------------------------------------------------------HhCCCCCHH
Q psy208 365 -----------------------------------------------------------------------AAFPGKPQE 373 (443)
Q Consensus 365 -----------------------------------------------------------------------~~~~~~~~~ 373 (443)
.........
T Consensus 799 ~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~ 878 (986)
T 2iw3_A 799 PRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878 (986)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHH
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHH
Confidence 001122356
Q ss_pred HHHHHHhcCCCChhh-hhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSGDL-ALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~-~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.++|..+|+.... .++++.+|||||||||+|||+|+.+|++|||||||||||+.++..+.+.|+++
T Consensus 879 ~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947 (986)
T ss_dssp HHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh
Confidence 678899999997544 68899999999999999999999999999999999999999999999999876
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=382.83 Aligned_cols=276 Identities=23% Similarity=0.276 Sum_probs=201.3
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|+.. ..++++++||||||| .++.|+.++|++ .++|||+||
T Consensus 137 ~~~~~~l~~lgl~~-~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vs 215 (538)
T 1yqt_A 137 GKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE 215 (538)
T ss_dssp SCHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 46889999999985 478999999999999 455566665543 488999999
Q ss_pred cCHHHHhccCCcEEEEeCCee--EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI--DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i--~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||+++++.+||+|++|+++.. ..|...++.-.. + ...... ... . .
T Consensus 216 Hd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~~-------------------~---~~~~~~--~~~--~-------~ 262 (538)
T 1yqt_A 216 HDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNG-------------------I---NEFLRG--YLK--D-------E 262 (538)
T ss_dssp SCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH-------------------H---HHHHHT--EET--T-------T
T ss_pred CCHHHHHHhCCEEEEEcCcccccccccchhhHHHH-------------------H---HHHhhh--ccc--h-------h
Confidence 999999999999999975421 233444432000 0 000000 000 0 0
Q ss_pred HHhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
. .+... ....+.++... ..+.++++++|+++.|+ + ..|+++||+|.+|+++||+||||||||||+|+|
T Consensus 263 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l 332 (538)
T 1yqt_A 263 N-VRFRP-------YEIKFTKTGERVEIERETLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332 (538)
T ss_dssp T-EECSS-------SCCCCCCSSGGGSSCCCEEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred h-hcccc-------cccccccCCcccccCCCeEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000 00011111111 12456899999999995 3 579999999999999999999999999999999
Q ss_pred HcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-CC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-FP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 324 ~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|+++|++|+|.+ ...+||++|++.. ....++.+.+... .. ....+.+.++++.+++. +..++++.+||||||
T Consensus 333 ~Gl~~p~~G~i~~--~~~i~~v~Q~~~~--~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 407 (538)
T 1yqt_A 333 AGVEEPTEGKIEW--DLTVAYKPQYIKA--DYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVNELSGGEL 407 (538)
T ss_dssp HTSSCCSBCCCCC--CCCEEEECSSCCC--CCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGGGCCHHHH
T ss_pred hCCCCCCCeEEEE--CceEEEEecCCcC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChhhCCHHHH
Confidence 9999999999976 3579999998643 2334444444321 00 01345678889999996 678899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||++|+.+|++|||||||||||+.+++.+.+.|+++
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l 447 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=377.69 Aligned_cols=276 Identities=22% Similarity=0.269 Sum_probs=199.7
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|..+|+.+ ..++++++||||||| .+..++.++|++ .+.|||+||
T Consensus 207 ~~~~~~L~~lgL~~-~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivs 285 (607)
T 3bk7_A 207 GKFEEVVKELELEN-VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285 (607)
T ss_dssp SCHHHHHHHTTCTT-GGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCCc-hhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 47889999999985 478999999999999 455555555533 488999999
Q ss_pred cCHHHHhccCCcEEEEeCCee--EEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRI--DTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIK 245 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i--~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 245 (443)
||+++++.+||+|++|+++.. ..+...++.- + . + ..+.... ... .
T Consensus 286 Hdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~----~----~-----------i---~~~~~~~--~~~---------~ 332 (607)
T 3bk7_A 286 HDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTR----N----G-----------I---NEFLQGY--LKD---------E 332 (607)
T ss_dssp SCHHHHHHHCSEEEEEESCTTTEEEECCCEEHH----H----H-----------H---HHHHHTE--ETT---------T
T ss_pred cChHHHHhhCCEEEEECCCccccceeccchhHH----H----H-----------H---HHHHhhc--chh---------h
Confidence 999999999999999986422 1223333310 0 0 0 0000000 000 0
Q ss_pred HHhcCCCCCCCccccccccccCCCC--CCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 246 QLERLPELKPIEKEVEVVLKFPDTE--LLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
. .+... ....+.+.... ..+.++++++|+++.|++ ..|+++||+|.+|+++||+||||||||||+|+|
T Consensus 333 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l 402 (607)
T 3bk7_A 333 N-VRFRP-------YEIRFTKLSERVDVERETLVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKML 402 (607)
T ss_dssp T-EECCS-------SCCCCCCSTTSCCCCCCEEEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHH
T ss_pred h-hhccc-------cccccccCCCcccccCceEEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 0 00000 00111111111 123568999999999953 479999999999999999999999999999999
Q ss_pred HcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-CCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHH
Q psy208 324 MGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-FPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQK 401 (443)
Q Consensus 324 ~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGek 401 (443)
+|+++|++|+|.+ ...+||++|++.. ....++.+.+... ... ...+.+.++++.+++. +..++++.+||||||
T Consensus 403 ~Gl~~p~~G~I~~--~~~i~~v~Q~~~~--~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGe~ 477 (607)
T 3bk7_A 403 AGVEEPTEGKVEW--DLTVAYKPQYIKA--EYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII-DLYDRNVEDLSGGEL 477 (607)
T ss_dssp HTSSCCSBSCCCC--CCCEEEECSSCCC--CCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-TTTTSBGGGCCHHHH
T ss_pred hcCCCCCceEEEE--eeEEEEEecCccC--CCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHH
Confidence 9999999999976 3569999998643 2334554444321 000 1245567889999996 678899999999999
Q ss_pred HHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 402 SRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 402 qRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 517 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=364.08 Aligned_cols=282 Identities=20% Similarity=0.212 Sum_probs=200.8
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEec
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSH 168 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSH 168 (443)
.++++++..+|+.. ..++++.+||||||| .+..||.++|+++ +.|||+|||
T Consensus 117 ~~~~~~l~~l~l~~-~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH 195 (538)
T 3ozx_A 117 GKKDEVKELLNMTN-LWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH 195 (538)
T ss_dssp SCHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 46888999999975 468999999999999 5666777776543 789999999
Q ss_pred CHHHHhccCCcEEEEeCCeeE--EEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 169 DRHFLDSVPTDIFHLHSQRID--TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSKIKQ 246 (443)
Q Consensus 169 Dr~fLd~v~~~i~~l~~g~i~--~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 246 (443)
|+++++.+||+|++|+++... .+...|.. ++ . +..++....... .
T Consensus 196 dl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~----~~--------~----------~~~~~~g~~~~~-----------~ 242 (538)
T 3ozx_A 196 DLIVLDYLTDLIHIIYGESSVYGRVSKSYAA----RV--------G----------INNFLKGYLPAE-----------N 242 (538)
T ss_dssp CHHHHHHHCSEEEEEEEETTTEEEECCCEEH----HH--------H----------HHHHHHTEETTT-----------T
T ss_pred ChHHHHhhCCEEEEecCCcccccccchhhhH----HH--------H----------HHHHHhhhchhh-----------h
Confidence 999999999999999764321 22233321 00 0 000000000000 0
Q ss_pred HhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 247 LERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+............. ........+.++++++|+++.|++ ..|.++||+|.+|+++||+||||||||||+|+|+|+
T Consensus 243 -~~~r~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 243 -MKIRPDEIKFMLKEV--SDLDLSKDLKTKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp -EECSSSCCCCSCC------------CCEEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred -hhccchhhhcccccc--ccccccccccceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 000000000000000 000000123568999999999953 578889999999999999999999999999999999
Q ss_pred CCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC---CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 327 ISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG---KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 327 ~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
++|++|+|.+.. ..++|++|+... ....++.+++...... .....+..++..+++. +..++++.+||||||||
T Consensus 318 ~~p~~G~i~~~~-~~i~~~~q~~~~--~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QR 393 (538)
T 3ozx_A 318 ITADEGSVTPEK-QILSYKPQRIFP--NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNVNDLSGGELQK 393 (538)
T ss_dssp SCCSBCCEESSC-CCEEEECSSCCC--CCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBGGGCCHHHHHH
T ss_pred CCCCCcEEEECC-eeeEeechhccc--ccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHH
Confidence 999999998654 468999998532 2345666665432211 2234567888899986 57889999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l 431 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRV 431 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-40 Score=352.07 Aligned_cols=279 Identities=20% Similarity=0.246 Sum_probs=196.1
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEE
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLL 164 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tvi 164 (443)
....++.++|+.+|+.. ..++++.+||||||| .++.++.++|+ +.+.|||
T Consensus 197 ~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 197 KSPEDVKRYIKILQLEN-VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp SCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEE
T ss_pred hHHHHHHHHHHHcCCcc-hhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34578999999999985 578999999999999 45556666554 4478999
Q ss_pred EEecCHHHHhccCCcEEEEeCCeeE--EEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 165 VVSHDRHFLDSVPTDIFHLHSQRID--TYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQS 242 (443)
Q Consensus 165 iVSHDr~fLd~v~~~i~~l~~g~i~--~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 242 (443)
+||||+++++.+||+|++|+++... .+...++. ++ . ...++..
T Consensus 276 ~vtHdl~~~~~~~drv~vl~~~~~~~~~~~~~~~~----~~-----~-------------~~~~~~~------------- 320 (608)
T 3j16_B 276 CVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASV----RE-----G-------------INIFLDG------------- 320 (608)
T ss_dssp EECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEH----HH-----H-------------HHHHHHT-------------
T ss_pred EEeCCHHHHHHhCCEEEEEeCCccccceecCchhH----HH-----H-------------HHHhhcc-------------
Confidence 9999999999999999999865431 11112111 00 0 0000000
Q ss_pred HHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCC-----CEEEEECCCCCcHH
Q psy208 243 KIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLE-----SRICIVGDNGAGKT 317 (443)
Q Consensus 243 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~G-----e~i~iiG~NGsGKS 317 (443)
...............+... .......+..++++++|++...+++++||++.+| |+++|+||||||||
T Consensus 321 ------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKS 392 (608)
T 3j16_B 321 ------HIPAENLRFRTEALQFRIA--DATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKT 392 (608)
T ss_dssp ------EETTTTEECSSSCCCCCCS--SSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHH
T ss_pred ------ccchhhhcccccccccccc--ccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHH
Confidence 0000000000000011110 1111112233678888965456899999999999 88999999999999
Q ss_pred HHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC--CCHHHHHHHHhcCCCChhhhhccCCC
Q psy208 318 TLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG--KPQEEYRRQLGGFGVSGDLALQFVGS 395 (443)
Q Consensus 318 TLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~gl~~~~~~~~~~~ 395 (443)
||+|+|+|+++|++|+.. ....++|++|+.... ...++.+++...... .....+..++..+++. +..++++.+
T Consensus 393 TLlk~l~Gl~~p~~G~~~--~~~~i~~~~q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~ 467 (608)
T 3j16_B 393 TLIKLLAGALKPDEGQDI--PKLNVSMKPQKIAPK--FPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQH 467 (608)
T ss_dssp HHHHHHHTSSCCSBCCCC--CSCCEEEECSSCCCC--CCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSS
T ss_pred HHHHHHhcCCCCCCCcCc--cCCcEEEeccccccc--CCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhh
Confidence 999999999999999842 345699999985322 233555555433221 2345567788899986 578899999
Q ss_pred CCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 396 LSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 468 LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l 513 (608)
T 3j16_B 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513 (608)
T ss_dssp CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988765
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=367.59 Aligned_cols=163 Identities=28% Similarity=0.402 Sum_probs=132.0
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
.|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+++ +..+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 59999999999642 3699999999999999999999999999999999999999999999864 2359
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--CCCHHHHHHHHhcCCCCh------hhh----hccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--GKPQEEYRRQLGGFGVSG------DLA----LQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gl~~------~~~----~~~~~~LSgGekqRl~lA~al 410 (443)
+|+||++. + ...++.+++....+ ....+++.+.+...++.. +.. .....+|||||||||+|||||
T Consensus 1110 ~~v~Q~~~--l-~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1110 GIVSQEPI--L-FDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp EEEESSCC--C-CSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCc--c-ccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 99999973 2 24577787753222 234556666555554421 111 224568999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 1187 ~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A 1187 VRQPHILLLDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp HHCCSSEEEESCSSSCCHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=313.40 Aligned_cols=165 Identities=28% Similarity=0.381 Sum_probs=140.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+++.++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 47999999999975556999999999999999999999999999999999999999999988642 25
Q ss_pred EEEeccCcccccccchhHHHHHHH--hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA--AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~--~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++...+. ..++.+++.. ...... .+.+.+++..+|+. +..++++.+|||||||||+|||||+.+|+
T Consensus 86 ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~ 163 (275)
T 3gfo_A 86 IGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 163 (275)
T ss_dssp EEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 9999998743333 4577666542 122222 23577889999995 67889999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.++..+.+.|.++
T Consensus 164 lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 164 VLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-39 Score=308.64 Aligned_cols=164 Identities=29% Similarity=0.353 Sum_probs=138.6
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|+++ .++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 48999999999632 36999999999999999999999999999999999999999999998641
Q ss_pred --eEEEEeccCcccccccchhHHHHHHHh--CC---CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEAA--FP---GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~---~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
..+||++|++. +.+..++.+++... .. ... .+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFN--LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCC--CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCc--cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 24999999863 45556777776431 11 122 2356788999999754458999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999765
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=299.69 Aligned_cols=163 Identities=30% Similarity=0.391 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 3 ~~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 3 EILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred cEEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 4799999999996 478999999999999999999999999999999999999999999988531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
..++|++|++. +....++.+++... ..... .+.+.+++..+++. +..++++.+|||||||||+||+||+.+
T Consensus 82 ~~i~~v~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 82 RKLGFVFQFHY--LIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHEEEECSSCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred CcEEEEecCcc--cCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 24999999863 44455666665321 11111 24567889999996 567899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+++.+.+.|.++
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998765
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=311.90 Aligned_cols=167 Identities=30% Similarity=0.430 Sum_probs=140.0
Q ss_pred CCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
..++|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 18 ~~~~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp -CEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred CCceEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 345899999999996 568999999999999999999999999999999999999999999988641
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhC-------CCCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAF-------PGKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~-------~~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..+||++|++...+....++.+++.... .... .+.+.+++..+|+. +..++++.+|||||||||+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHH
Confidence 2489999985322333457777764311 0111 23567889999995 57789999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=304.03 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=139.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~ 341 (443)
++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 23 ~~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CSEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred heEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 4799999999995 568999999999999999999999999999999999999999999988641 14
Q ss_pred EEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
+||++|++. +....++.+++.. ...... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 102 i~~v~Q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 102 VGMVFQRFN--LFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp EEEECSSCC--CCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCc--CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 999999863 4455577666643 122222 24567889999995 5678999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|+++
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999765
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-38 Score=303.10 Aligned_cols=163 Identities=27% Similarity=0.422 Sum_probs=139.2
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 5 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred ceEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 4799999999995 568999999999999999999999999999999999999999999987541
Q ss_pred ---------eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhh-hhccCCCCCHHHHH
Q psy208 340 ---------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDL-ALQFVGSLSGGQKS 402 (443)
Q Consensus 340 ---------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~-~~~~~~~LSgGekq 402 (443)
..+||++|++ .+....++.+++.. ...... .+.+.+++..+|+. +. .++++.+|||||||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp CHHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHH
T ss_pred ChhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHH
Confidence 1389999985 34455677766643 122222 24567889999996 45 78999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998765
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=303.48 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=140.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 5 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 5 MEILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp CEEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred CcEEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 34799999999995 568999999999999999999999999999999999999999999988641 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhC-C---C-----------C-C---HHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF-P---G-----------K-P---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~-~---~-----------~-~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
+||++|++. +....++.+++.... . . . . ...+.+++..+|+. +..++++.+|||||||
T Consensus 84 i~~v~q~~~--l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 84 IVRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMK 160 (257)
T ss_dssp EEECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHH
T ss_pred EEEEccCCc--cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHH
Confidence 999999863 445667777775321 1 1 1 1 24567889999995 5778999999999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+|||||+.+|++|||||||++||+.+++.+.+.|.++
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999765
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=296.68 Aligned_cols=162 Identities=23% Similarity=0.335 Sum_probs=139.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------eEEEEecc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------LKFGYFSQ 347 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------~~ig~~~Q 347 (443)
..+|+++||+++|+ + ++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|++|
T Consensus 8 ~~~l~~~~ls~~y~-~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp -CEEEEEEEEEESS-S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred CceEEEEEEEEEeC-C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 35799999999996 4 8999999999999999999999999999999999999999999998653 35999999
Q ss_pred CcccccccchhHHHHHHH---hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 348 HHVDQLDMNLRCVQLLEA---AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~---~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
++. +....++.+++.. ... ....+.+..+++.+|+.. . ++++.+|||||||||+||+||+.+|++|||||||
T Consensus 86 ~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPt 161 (214)
T 1sgw_A 86 EII--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPV 161 (214)
T ss_dssp SCC--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTT
T ss_pred CCc--CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 863 3445566666532 111 223567888999999974 4 8899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|.++
T Consensus 162 s~LD~~~~~~l~~~l~~~ 179 (214)
T 1sgw_A 162 VAIDEDSKHKVLKSILEI 179 (214)
T ss_dssp TTSCTTTHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=301.66 Aligned_cols=164 Identities=22% Similarity=0.335 Sum_probs=138.6
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 4 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CceEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 35799999999996 468999999999999999999999999999999999999999999988641 13
Q ss_pred EEEeccCcccccccchhHHHHHHHhC-CC--CC--HHHHHHHHhcCC-CChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF-PG--KP--QEEYRRQLGGFG-VSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~-~~--~~--~~~~~~~L~~~g-l~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
+||++|++ .+....++.+++.... .. .. .+.+..+++.++ +. +..++++.+|||||||||+|||||+.+|+
T Consensus 83 i~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 159 (240)
T 1ji0_A 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999986 3445567777775421 11 11 235667888884 74 56788999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|.++
T Consensus 160 lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 160 LLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999765
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=316.89 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=140.9
Q ss_pred CCCeEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------
Q psy208 273 SPPILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------- 339 (443)
Q Consensus 273 ~~~~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------- 339 (443)
.+++|+++||+++|+++ .++|+||||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999632 36999999999999999999999999999999999999999999988642
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
..+||++|++ .+.+..++.+++... ..... .+.+.++|+.+|+. +..++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHH
Confidence 2599999986 355666777776431 11222 23577889999996 57899999999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l 209 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDI 209 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999765
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=301.86 Aligned_cols=161 Identities=22% Similarity=0.367 Sum_probs=138.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
+|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+. ..+||++|++. +..
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~--~~~ 79 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFS--SPF 79 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCC--CSS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCc--cCC
Confidence 79999999999524689999999999999999999999999999999999999999999853 36999999863 334
Q ss_pred chhHHHHHHHhC----C---CCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 356 NLRCVQLLEAAF----P---GKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 356 ~~~~~~~~~~~~----~---~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
..++.+++.... . ... .+.+..++..+|+. +..++++.+|||||||||+|||||+.+|++|||||||++
T Consensus 80 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~ 158 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSA 158 (253)
T ss_dssp CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTT
T ss_pred CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 557777765321 0 011 24577889999996 567899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.+++.+.+.|.++
T Consensus 159 LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 159 LDLANQDIVLSLLIDL 174 (253)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999765
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=301.85 Aligned_cols=164 Identities=24% Similarity=0.401 Sum_probs=141.3
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
.++|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 9 ~~~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp CCEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred cceEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 35899999999995 578999999999999999999999999999999999999999999998642 248
Q ss_pred EEeccCcccccccchhHHHHHHHhC---C-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc------
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF---P-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA------ 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~---~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~------ 412 (443)
+|++|++. +....++.+++.... . ....+.+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 88 ~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~ 164 (266)
T 4g1u_C 88 AVMRQYSE--LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQP 164 (266)
T ss_dssp EEECSCCC--CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSC
T ss_pred EEEecCCc--cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCC
Confidence 99999863 334567777775321 1 12245678899999996 57789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|+++
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=301.17 Aligned_cols=165 Identities=29% Similarity=0.402 Sum_probs=140.4
Q ss_pred eEEEeeeEEEeC-CC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEE
Q psy208 276 ILQLSEVNFEYV-PG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~-~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig 343 (443)
+|+++||+++|+ ++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999996 23 57999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccCcccccccchhHHHHHHHhC----C-CCCHHHHHHHHhcCCCCh-hhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF----P-GKPQEEYRRQLGGFGVSG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~----~-~~~~~~~~~~L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++...+ ...++.+++.... + ....+.+..++..+|+.. +..++++.+|||||||||+|||||+.+|++|
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 160 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDIL 160 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999853222 3467777775421 1 123456888999999962 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 161 lLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 161 ILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEcCccccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=300.28 Aligned_cols=164 Identities=25% Similarity=0.350 Sum_probs=139.1
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFG 343 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 343 (443)
.++|+++||+++|+ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 13 ~~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~ 91 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLIS 91 (256)
T ss_dssp -CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEE
T ss_pred CCeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEE
Confidence 46899999999995 578999999999999999999999999999999999999999999988642 2499
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL 417 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL 417 (443)
|++|++. +....++.+++... ..... .+.+.+++..+|+. +..++++.+|||||||||+||+||+.+|++|
T Consensus 92 ~v~q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~ll 168 (256)
T 1vpl_A 92 YLPEEAG--AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLA 168 (256)
T ss_dssp EECTTCC--CCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEcCCCC--CCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999863 34455666665321 11112 23567889999986 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHccc
Q psy208 418 VLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 418 iLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||++||+.++..+.+.|.++
T Consensus 169 lLDEPts~LD~~~~~~l~~~l~~l 192 (256)
T 1vpl_A 169 ILDEPTSGLDVLNAREVRKILKQA 192 (256)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999765
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=311.67 Aligned_cols=161 Identities=26% Similarity=0.440 Sum_probs=140.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------~~i 342 (443)
+|+++||+++|+ +.++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+.+. ..+
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 699999999995 578999999999999999999999999999999999999999999987542 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCC--CC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP--GK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~--~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++ .+.+..++.+++..... .. ..+.+.++|+.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 83 g~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~l 159 (359)
T 3fvq_A 83 GYLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPEL 159 (359)
T ss_dssp EEECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999986 46667788888864221 11 134577889999996 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
|||||||++||+.++..+.+.|.+
T Consensus 160 LLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 160 ILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHH
Confidence 999999999999999999876654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=310.89 Aligned_cols=167 Identities=25% Similarity=0.340 Sum_probs=142.2
Q ss_pred CCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEE
Q psy208 272 LSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKF 342 (443)
Q Consensus 272 ~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~i 342 (443)
.+..+|+++||+++|++++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+.+. ..+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 35678999999999932467999999999999999999999999999999999999999999988642 359
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
||++|++ .+.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999985 355667777776431 11222 34577899999995 578899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|+++
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l 191 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQV 191 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=294.79 Aligned_cols=162 Identities=29% Similarity=0.406 Sum_probs=134.9
Q ss_pred eEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
-++++||+++|+ +++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+|
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 389999999993 3467999999999999999999999999999999999999999999988641 2499
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. +.. .++.+++.........+.+...+..+++. +..+ +++.+|||||||||+|||||+.
T Consensus 87 ~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~ 162 (247)
T 2ff7_A 87 VVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAH-DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 162 (247)
T ss_dssp EECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCH-HHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTT
T ss_pred EEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChH-HHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999863 222 48888875432233455667777777764 2333 4568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|.++
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=298.24 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=138.4
Q ss_pred eEEEeeeEEEeCCC---CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------eEEE-
Q psy208 276 ILQLSEVNFEYVPG---KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------LKFG- 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~---~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------~~ig- 343 (443)
+|+++|++++|++. +++|+|+||+|+ |++++|+||||||||||+|+|+|++ |++|+|.+.+. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 48999999999631 679999999999 9999999999999999999999999 99999998652 2589
Q ss_pred EeccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
|++|++. + ..++.+++... ......+.+.+++..+++..+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 79 ~v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 154 (263)
T 2pjz_A 79 NLPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDE 154 (263)
T ss_dssp CCGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred EeCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 9999863 2 55666665421 1134566788999999996356789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcccc
Q psy208 422 PTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~~ 442 (443)
||++||+.+++.+.+.|.++.
T Consensus 155 Pts~LD~~~~~~l~~~L~~~~ 175 (263)
T 2pjz_A 155 PFENVDAARRHVISRYIKEYG 175 (263)
T ss_dssp TTTTCCHHHHHHHHHHHHHSC
T ss_pred CccccCHHHHHHHHHHHHHhc
Confidence 999999999999999998764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=311.73 Aligned_cols=162 Identities=25% Similarity=0.344 Sum_probs=140.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ +..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 589999999995 578999999999999999999999999999999999999999999998642 3599999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD 158 (381)
T 3rlf_A 82 QSY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD 158 (381)
T ss_dssp TTC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986 456677887776421 11222 34577899999996 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+..+..+.+.|+++
T Consensus 159 EPts~LD~~~~~~l~~~l~~l 179 (381)
T 3rlf_A 159 EPLSNLDAALRVQMRIEISRL 179 (381)
T ss_dssp STTTTSCHHHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=293.32 Aligned_cols=159 Identities=24% Similarity=0.359 Sum_probs=136.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ + +|+|+||+|++ ++++|+||||||||||+|+|+|+++|++|+|.+.+. ..+||++
T Consensus 1 ml~~~~l~~~y~-~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~ 76 (240)
T 2onk_A 1 MFLKVRAEKRLG-N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CCEEEEEEEEET-T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred CEEEEEEEEEeC-C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEc
Confidence 478999999995 3 59999999999 999999999999999999999999999999988642 2589999
Q ss_pred cCcccccccchhHHHHHHHhCCCC----CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGK----PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
|++. +....++.+++....... ..+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 q~~~--l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEP 153 (240)
T 2onk_A 77 QDYA--LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSCC--CCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred CCCc--cCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9863 455667777775322111 134577899999996 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.+++.+.+.|.++
T Consensus 154 ts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 154 LSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=306.47 Aligned_cols=162 Identities=22% Similarity=0.297 Sum_probs=141.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVF 81 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEe
Confidence 589999999995 567999999999999999999999999999999999999999999988642 2599999
Q ss_pred cCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD 158 (359)
T 2yyz_A 82 QNY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD 158 (359)
T ss_dssp SSC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 986 35567788888764321 111 24578899999995 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.+++.+.+.|+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l 179 (359)
T 2yyz_A 159 EPLSNLDANLRMIMRAEIKHL 179 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=297.52 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=134.9
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------ 339 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------ 339 (443)
.++|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+.+.
T Consensus 18 ~~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp --CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred CceEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 45799999999995 57899999999999999999999999999999999999 4689999988642
Q ss_pred eEEEEeccCcccccccchhHHHHHHH---------hCCCCC----HHHHHHHHhcCCCChhhhhccCC-CCCHHHHHHHH
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEA---------AFPGKP----QEEYRRQLGGFGVSGDLALQFVG-SLSGGQKSRVA 405 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~---------~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~-~LSgGekqRl~ 405 (443)
..++|++|++. +....++.+++.. ...... .+.+.++++.+|+.....++++. +|||||||||+
T Consensus 97 ~~i~~v~Q~~~--l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~ 174 (267)
T 2zu0_C 97 EGIFMAFQYPV--EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRND 174 (267)
T ss_dssp HTEEEECSSCC--CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHH
T ss_pred CCEEEEccCcc--ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHH
Confidence 13899999863 2334444443321 111112 23567889999996456778887 59999999999
Q ss_pred HHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 406 FARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 406 lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||+.+|++|||||||++||+.+++.+.+.|.++.
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~ 211 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR 211 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998763
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=304.93 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=139.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
||+++||+++|+ ++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 1 ml~~~~l~~~y~-~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 78 (348)
T 3d31_A 1 MIEIESLSRKWK-NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (348)
T ss_dssp CEEEEEEEEECS-SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEEC-CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEe
Confidence 489999999996 46 999999999999999999999999999999999999999999998652 2489999
Q ss_pred cCcccccccchhHHHHHHHh---CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAA---FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++ .+.+..++.+++... ......+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~ 155 (348)
T 3d31_A 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (348)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred cCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 986 355566777776431 1111236788899999996 5788999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.+++.+.+.|+++
T Consensus 156 s~LD~~~~~~l~~~l~~l 173 (348)
T 3d31_A 156 SALDPRTQENAREMLSVL 173 (348)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 999999999999998765
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=331.56 Aligned_cols=270 Identities=20% Similarity=0.184 Sum_probs=182.8
Q ss_pred CCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHH---HhhhCCC
Q psy208 113 DKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLEN---YLQNWPT 161 (443)
Q Consensus 113 ~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~---~L~~~~~ 161 (443)
+++..|++ .|..+|++...+++++.+|||||+| ..+.||.+ .|+++++
T Consensus 354 ~ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~ 432 (842)
T 2vf7_A 354 ADLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGN 432 (842)
T ss_dssp HHHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCC
Confidence 45678888 6889999865578999999999999 35555555 5677899
Q ss_pred eEEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 162 TLLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNAN 235 (443)
Q Consensus 162 tviiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (443)
|||+||||+++++ .||+|++| ++|++ +|.|+|+++.+.++... ..++.
T Consensus 433 TVIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~i-v~~g~~~~~~~~~~~~~-----------------~~~l~------- 486 (842)
T 2vf7_A 433 SLFVVEHDLDVIR-RADWLVDVGPEAGEKGGEI-LYSGPPEGLKHVPESQT-----------------GQYLF------- 486 (842)
T ss_dssp EEEEECCCHHHHT-TCSEEEEECSSSGGGCCSE-EEEECGGGGGGCTTCHH-----------------HHHHH-------
T ss_pred EEEEEcCCHHHHH-hCCEEEEeCCCcccCCCEE-EEecCHHHHHhchHHHH-----------------HHHhh-------
Confidence 9999999999986 69999999 45555 58899998854311000 00000
Q ss_pred HHHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCc
Q psy208 236 RASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAG 315 (443)
Q Consensus 236 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsG 315 (443)
.+. .. ++ . .+..+.++|+++|+++ ..|+||||+|++|+++||+|+||||
T Consensus 487 ------------~~~-~~-~~---~--------~~~~~~~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSG 535 (842)
T 2vf7_A 487 ------------ADR-HT-EP---H--------TPREPAGWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSG 535 (842)
T ss_dssp ------------TCC-CC-CC---C--------CCCCCSCEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSS
T ss_pred ------------hcc-cc-cc---c--------ccCCCCceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcC
Confidence 000 00 00 0 0112346899999985 1699999999999999999999999
Q ss_pred HHHHHHH-HHcCC-------CCCCceEE-------------Ec---CceEEEEeccCccccccc----------------
Q psy208 316 KTTLLKI-IMGII-------SPTAGTRT-------------VH---RNLKFGYFSQHHVDQLDM---------------- 355 (443)
Q Consensus 316 KSTLlk~-l~G~~-------~p~~G~i~-------------~~---~~~~ig~~~Q~~~~~l~~---------------- 355 (443)
||||+++ |+|++ +|+.|.+. .+ .-.++.++.|.+......
T Consensus 536 KSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~ 615 (842)
T 2vf7_A 536 KSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKL 615 (842)
T ss_dssp HHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHH
Confidence 9999996 77543 45455431 11 011233555543210000
Q ss_pred -------------------------------------------------------------------ch--------hHH
Q psy208 356 -------------------------------------------------------------------NL--------RCV 360 (443)
Q Consensus 356 -------------------------------------------------------------------~~--------~~~ 360 (443)
.. ++.
T Consensus 616 fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~ 695 (842)
T 2vf7_A 616 FAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVD 695 (842)
T ss_dssp HHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHH
T ss_pred HhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHH
Confidence 00 111
Q ss_pred HHHHHhCCCC-CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC---CCeEEEeCCCCCCCHHHHHHHHH
Q psy208 361 QLLEAAFPGK-PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA---PNFLVLDEPTNHLDIETIEALGK 436 (443)
Q Consensus 361 ~~~~~~~~~~-~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~---p~lLiLDEPTn~LD~~s~~~l~~ 436 (443)
+.+. .+... ....+.++|..+|+.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.+++.|.+
T Consensus 696 e~l~-~~~~~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~ 774 (842)
T 2vf7_A 696 EAHD-FFADESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQR 774 (842)
T ss_dssp HHHH-HTTTSHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHH
T ss_pred HHHH-HhhcchHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 1111 11111 1234577899999975456899999999999999999999996 79999999999999999999999
Q ss_pred HHccc
Q psy208 437 AINKY 441 (443)
Q Consensus 437 ~L~~~ 441 (443)
.|.++
T Consensus 775 lL~~L 779 (842)
T 2vf7_A 775 QLVKL 779 (842)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=305.37 Aligned_cols=162 Identities=26% Similarity=0.369 Sum_probs=140.5
Q ss_pred eEEEeeeEEEeCCCCc--eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc--------------
Q psy208 276 ILQLSEVNFEYVPGKP--ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~--il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------------- 339 (443)
+|+++||+++|+ +++ +|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~l~~~y~-~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEG-GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEEC-CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 589999999995 467 999999999999999999999999999999999999999999987531
Q ss_pred eEEEEeccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 340 LKFGYFSQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 340 ~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
..+||++|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 82 r~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~ 158 (353)
T 1oxx_K 82 RKIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKD 158 (353)
T ss_dssp SCEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhC
Confidence 2599999986 35667788888764221 222 24577899999995 578899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.++..+.+.|+++
T Consensus 159 P~lLLLDEP~s~LD~~~r~~l~~~l~~l 186 (353)
T 1oxx_K 159 PSLLLLDEPFSNLDARMRDSARALVKEV 186 (353)
T ss_dssp CSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=295.39 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=134.1
Q ss_pred CeEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.+|+++||+++|++ .+++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 47999999999964 267999999999999999999999999999999999999999999998642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCH-HH---------HHHHHhcC--CCChhhhhccCCCCCHHHHHHHHHHHH
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQ-EE---------YRRQLGGF--GVSGDLALQFVGSLSGGQKSRVAFARM 409 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~-~~---------~~~~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~a 409 (443)
+||++|++. +.. .++.+++......... .. +..++..+ |+. ...++++.+|||||||||+||||
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAra 170 (271)
T 2ixe_A 95 VAAVGQEPL--LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALARA 170 (271)
T ss_dssp EEEECSSCC--CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHH
T ss_pred EEEEecCCc--ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHH
Confidence 999999863 333 4888887643221111 11 23445555 453 34678899999999999999999
Q ss_pred hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 410 CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 410 l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.+|++|||||||++||+.++..+.+.|.++
T Consensus 171 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 202 (271)
T 2ixe_A 171 LIRKPRLLILDNATSALDAGNQLRVQRLLYES 202 (271)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=305.98 Aligned_cols=162 Identities=25% Similarity=0.369 Sum_probs=139.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||++
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 81 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVF 81 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEEC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEe
Confidence 589999999995 568999999999999999999999999999999999999999999988642 2599999
Q ss_pred cCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|++. +.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 82 Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 158 (362)
T 2it1_A 82 QNWA--LYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD 158 (362)
T ss_dssp TTCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred cCcc--cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 9863 55667777776431 11122 24577889999996 5788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||++||+.++..+.+.|+++
T Consensus 159 EP~s~LD~~~r~~l~~~l~~l 179 (362)
T 2it1_A 159 EPLSNLDALLRLEVRAELKRL 179 (362)
T ss_dssp SGGGGSCHHHHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHH
Confidence 999999999999999998765
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-37 Score=295.76 Aligned_cols=163 Identities=23% Similarity=0.305 Sum_probs=131.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC--CCCCCceEEEcCc------------eE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI--ISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~--~~p~~G~i~~~~~------------~~ 341 (443)
+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+|+|+|+ ++|++|+|.+.+. ..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 699999999995 57899999999999999999999999999999999998 7899999988642 13
Q ss_pred EEEeccCcccccccchhHHHHHHHh----CC-CCC----HHHHHHHHhcCCCChhhhhccCCC-CCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKP----QEEYRRQLGGFGVSGDLALQFVGS-LSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~----~~~~~~~L~~~gl~~~~~~~~~~~-LSgGekqRl~lA~al~ 411 (443)
++|++|++. +....++.+++... .. ... ...+.+++..+|+..+..++++++ |||||||||+|||||+
T Consensus 82 i~~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~ 159 (250)
T 2d2e_A 82 LFLAFQYPV--EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLV 159 (250)
T ss_dssp BCCCCCCCC---CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHH
T ss_pred EEEeccCCc--cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 789999863 33444555554311 11 111 245678899999954667899999 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.+++.+.+.|.++
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 189 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAM 189 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=305.62 Aligned_cols=163 Identities=23% Similarity=0.340 Sum_probs=138.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
.+|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||+
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 10 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eeEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 3699999999995 567999999999999999999999999999999999999999999988642 359999
Q ss_pred ccCcccccccchhHHHHHHHhCC--CCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAFP--GKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~~--~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
+|++ .+.+..++.+++..... ... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 89 ~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLL 165 (372)
T 1v43_A 89 FQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 165 (372)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred ecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9985 35567788888764321 122 23577889999996 578899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.+++.+.+.|+++
T Consensus 166 DEP~s~LD~~~r~~l~~~l~~l 187 (372)
T 1v43_A 166 DEPLSNLDAKLRVAMRAEIKKL 187 (372)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=299.16 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=136.9
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
..|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+|
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 35999999999975678999999999999999999999999999999999999999999998652 2599
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. +. ..++.+++..........++...+..+++... ...+++.+|||||||||+|||||+.+
T Consensus 132 ~v~Q~~~--lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~ 208 (306)
T 3nh6_A 132 VVPQDTV--LF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKA 208 (306)
T ss_dssp EECSSCC--CC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred EEecCCc--cC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhC
Confidence 9999873 33 34888888654434455666666666665321 22345579999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||+.+...+.+.|.++
T Consensus 209 p~iLlLDEPts~LD~~~~~~i~~~l~~l 236 (306)
T 3nh6_A 209 PGIILLDEATSALDTSNERAIQASLAKV 236 (306)
T ss_dssp CSEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=294.28 Aligned_cols=162 Identities=27% Similarity=0.380 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++|++++++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+. ..++|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 4899999999953567999999999999999999999999999999999999999999988541 24899
Q ss_pred eccCcccccccchhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhhh-----------hccCCCCCHHHHHHHHHHHHhcc
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDLA-----------LQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~~-----------~~~~~~LSgGekqRl~lA~al~~ 412 (443)
++|++. +.. .++.+++... ........+...+..+++.. .. ++++.+|||||||||+|||||+.
T Consensus 81 v~q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 81 VSQDSA--IMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARS-FVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp ECCSSC--CCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTT-TTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EcCCCc--ccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHH-HHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 999863 333 3788877532 12334566777788777742 22 34568999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+++.+.+.|.++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~ 185 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSL 185 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=305.05 Aligned_cols=162 Identities=22% Similarity=0.331 Sum_probs=139.2
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------e
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------L 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------~ 340 (443)
+|+++||+++|+ ++++|+|+||+|.+|++++|+||||||||||||+|+|+++|++|+|.+++. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 589999999995 568999999999999999999999999999999999999999999987531 2
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.+||++|++. +.+..++.+++... ..... .+.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~~--l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P 158 (372)
T 1g29_1 82 DIAMVFQSYA--LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (372)
T ss_dssp SEEEECSCCC--CCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CEEEEeCCCc--cCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 4999999863 55667777776431 11222 24577889999995 5788999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.+++.+.+.|+++
T Consensus 159 ~lLLLDEP~s~LD~~~r~~l~~~l~~l 185 (372)
T 1g29_1 159 QVFLMDEPLSNLDAKLRVRMRAELKKL 185 (372)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEECCCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-36 Score=283.35 Aligned_cols=161 Identities=23% Similarity=0.346 Sum_probs=129.9
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccc
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQL 353 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l 353 (443)
.+|+++||+++|++ ++++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~--~ 80 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSW--I 80 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCC--C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCc--c
Confidence 37999999999962 46799999999999999999999999999999999999999999999976 5999999863 3
Q ss_pred ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 354 DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
... ++.+++..... .........+..+++... ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 81 ~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 81 MPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred cCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 333 78888754221 223334444555554211 122346899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-ccc
Q psy208 424 NHLDIETIEALGKAI-NKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L-~~~ 441 (443)
++||+.+++.+.+.+ ..+
T Consensus 159 s~LD~~~~~~i~~~l~~~~ 177 (229)
T 2pze_A 159 GYLDVLTEKEIFESCVCKL 177 (229)
T ss_dssp TTSCHHHHHHHHHHCCCCC
T ss_pred cCCCHHHHHHHHHHHHHHh
Confidence 999999999999974 443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=287.80 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=129.0
Q ss_pred eEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+|+++||+++|++ ++++|+++||+|.+|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 5899999999963 36799999999999999999999999999999999999999999999976 5999999863 3
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCC------h----hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVS------G----DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~------~----~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
...++.+++..... .........+..+++. + ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 78 ~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 156 (237)
T 2cbz_A 78 QNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLS 156 (237)
T ss_dssp CSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence 35678888754221 1112223333333321 1 12457889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHc
Q psy208 425 HLDIETIEALGKAIN 439 (443)
Q Consensus 425 ~LD~~s~~~l~~~L~ 439 (443)
+||+.++..+.+.|.
T Consensus 157 ~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 157 AVDAHVGKHIFENVI 171 (237)
T ss_dssp TSCHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999999984
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-36 Score=288.20 Aligned_cols=163 Identities=22% Similarity=0.280 Sum_probs=134.4
Q ss_pred CeEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eE
Q psy208 275 PILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LK 341 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ 341 (443)
.+|+++||+++|++. +++|+|+||+|++|++++|+||||||||||+|+|+|+++| +|+|.+.+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999643 4699999999999999999999999999999999999987 899988642 24
Q ss_pred EEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhc
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~ 411 (443)
++|++|++. +.. .++.+++.........+++...+..+++.... .++++.+|||||||||+|||||+
T Consensus 95 i~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTI--LFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCC--CCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCc--ccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 999999863 232 47888875432223455667777777763211 23567899999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|.++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDL 201 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999765
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=286.04 Aligned_cols=157 Identities=27% Similarity=0.361 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
+|+++||+++ ++|+|+||+|.+|++++|+||||||||||+|+|+|+++|+ |+|.+.+. ..+||
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 6999999985 5999999999999999999999999999999999999999 99998652 24999
Q ss_pred eccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC-------e
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN-------F 416 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~-------l 416 (443)
++|++. +....++.+++.... .....+.+.+++..+|+. +..++++.+|||||||||+|||||+.+|+ +
T Consensus 78 v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 78 LSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp ECSCCC--CCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ECCCCc--cCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 999863 345567888775321 111356788899999995 57789999999999999999999999999 9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||||||++||+.+++.+.+.|+++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999775
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-34 Score=329.57 Aligned_cols=163 Identities=21% Similarity=0.290 Sum_probs=136.4
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~i 342 (443)
-|+++||+|+|+++ .++|+|+||+|++|+++|||||+|||||||+++|.|+++|++|+|.+++ +.++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 59999999999642 4799999999999999999999999999999999999999999999875 2369
Q ss_pred EEeccCcccccccchhHHHHHHHh--CCCCCHHHHHHHHhcCCCChh------hhhc----cCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA--FPGKPQEEYRRQLGGFGVSGD------LALQ----FVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~gl~~~------~~~~----~~~~LSgGekqRl~lA~al 410 (443)
+|+||+|. + .+.|+.+++... .+..+++++.+.+...++... -.+. ...+||||||||++|||||
T Consensus 1156 ~~V~Qdp~--L-F~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAl 1232 (1321)
T 4f4c_A 1156 AIVSQEPT--L-FDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232 (1321)
T ss_dssp EEECSSCC--C-CSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHH
T ss_pred EEECCCCE--e-eCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHH
Confidence 99999974 2 245778887532 134567888888888776321 1223 3357999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++|+||||||||++||+++...+.+.|++.
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=317.88 Aligned_cols=265 Identities=20% Similarity=0.234 Sum_probs=168.7
Q ss_pred HHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhh---hCCCeEEEEecC
Q psy208 121 VILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQ---NWPTTLLVVSHD 169 (443)
Q Consensus 121 ~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~---~~~~tviiVSHD 169 (443)
.+|..+||++...++++.+||||||| ..+.|+.++|+ +.+.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46889999865568999999999999 35566666664 457899999999
Q ss_pred HHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 170 RHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSVQSK 243 (443)
Q Consensus 170 r~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 243 (443)
++++.. ||+|++| ++|++. +.|++++...... ... ..+
T Consensus 264 ~~~~~~-~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~--------~~~---------~~~----------------- 307 (670)
T 3ux8_A 264 EDTMLA-ADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPN--------SLT---------GQY----------------- 307 (670)
T ss_dssp HHHHHH-CSEEEEECSSSGGGCCSEE-EEECHHHHHTCTT--------CHH---------HHH-----------------
T ss_pred HHHHhh-CCEEEEecccccccCCEEE-EecCHHHHhcCch--------hHH---------HHH-----------------
Confidence 999875 9999999 788885 5688766432100 000 000
Q ss_pred HHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH
Q psy208 244 IKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
+... ...+.+.. ........+++.+. ...+|+||||+|++|+++||+||||||||||+++|
T Consensus 308 ---~~~~-~~~~~~~~---------~~~~~~~~~~~~~~------~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 308 ---LSGK-KFIPIPAE---------RRRPDGRWLEVVGA------REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp ---HTTS-SCCCCCSS---------CCCCCSCEEEEEEE------CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ---hccc-cccccccc---------cccccccceeecCc------cccccccceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 0000 00000000 00111234444432 24589999999999999999999999999999876
Q ss_pred H----------------------cCCCCCCceEEEcCce-----------------------------------------
Q psy208 324 M----------------------GIISPTAGTRTVHRNL----------------------------------------- 340 (443)
Q Consensus 324 ~----------------------G~~~p~~G~i~~~~~~----------------------------------------- 340 (443)
+ |+..+ .|.+.+....
T Consensus 369 ~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (670)
T 3ux8_A 369 LYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSF 447 (670)
T ss_dssp HHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCT
T ss_pred HHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccc
Confidence 4 22211 2233221100
Q ss_pred -----------EEEEeccCccc------------------------------ccccchhHHHHHHHhCCCCCHHHHHHHH
Q psy208 341 -----------KFGYFSQHHVD------------------------------QLDMNLRCVQLLEAAFPGKPQEEYRRQL 379 (443)
Q Consensus 341 -----------~ig~~~Q~~~~------------------------------~l~~~~~~~~~~~~~~~~~~~~~~~~~L 379 (443)
..|+++++... ......++.+++.............+.+
T Consensus 448 ~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l 527 (670)
T 3ux8_A 448 NVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETL 527 (670)
T ss_dssp TSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHH
Confidence 00111110000 0000123333332211111123456778
Q ss_pred hcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC---eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 380 GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN---FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 380 ~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~---lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..+++.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.+.|+++
T Consensus 528 ~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l 592 (670)
T 3ux8_A 528 YDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 592 (670)
T ss_dssp HHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 888886556688999999999999999999998875 99999999999999999999998765
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=326.04 Aligned_cols=271 Identities=21% Similarity=0.278 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHh---hhCCCe
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYL---QNWPTT 162 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L---~~~~~t 162 (443)
++..|+ ..|..+||+...++|++.+|||||+| ..+.||.+.| ++.+.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 355676 45899999865578999999999999 4666777665 467889
Q ss_pred EEEEecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANR 236 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 236 (443)
||+||||++++. .||+|++| ++|++ ++.|+|+++....+. .. ..+
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~i-v~~G~~~e~~~~~~s--------lt---------~~~---------- 609 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS--------LT---------GQY---------- 609 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCSE-EEEECTTTTTTCTTC--------TT---------HHH----------
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCEE-EEecCHHHHHhhhHH--------HH---------HHH----------
Confidence 999999999997 59999999 45666 588999887542110 00 000
Q ss_pred HHHHHHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcH
Q psy208 237 ASSVQSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGK 316 (443)
Q Consensus 237 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGK 316 (443)
+...... +.+.. ......++|++++++. ..|+||||+|++|+++||+|+|||||
T Consensus 610 ----------l~g~~~~-~~~~~---------~~~~~~~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGK 663 (972)
T 2r6f_A 610 ----------LSGKKFI-PIPAE---------RRRPDGRWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGK 663 (972)
T ss_dssp ----------HHTSSCC-CCCSS---------CCCCCSCEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSH
T ss_pred ----------hcCCccc-cCccc---------cccccceEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCH
Confidence 0000000 00000 0011236799999862 36999999999999999999999999
Q ss_pred HHHHHHHH-cCC-------CCCCceE-EEcC---ceEEEEeccCcccc--------------------------------
Q psy208 317 TTLLKIIM-GII-------SPTAGTR-TVHR---NLKFGYFSQHHVDQ-------------------------------- 352 (443)
Q Consensus 317 STLlk~l~-G~~-------~p~~G~i-~~~~---~~~ig~~~Q~~~~~-------------------------------- 352 (443)
|||+++|+ |.+ .+..|.+ .+.+ -.++.+++|.+...
T Consensus 664 STLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~ 743 (972)
T 2r6f_A 664 STLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYK 743 (972)
T ss_dssp HHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhccc
Confidence 99999854 221 1234431 1111 01122233322100
Q ss_pred -----cc------------------------------------------------------cchhHHHHHHHhCCCCC-H
Q psy208 353 -----LD------------------------------------------------------MNLRCVQLLEAAFPGKP-Q 372 (443)
Q Consensus 353 -----l~------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 372 (443)
++ ...++.+.+. .+.... .
T Consensus 744 ~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~-~~~~~~~~ 822 (972)
T 2r6f_A 744 KGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALD-FFASIPKI 822 (972)
T ss_dssp TTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHH-HTCSCHHH
T ss_pred ccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHH-HHhcchhH
Confidence 00 0112222221 111111 1
Q ss_pred HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 373 EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 373 ~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
....++|..+|+.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.+.|.++
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 894 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL 894 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 234678899999754678999999999999999999999865 999999999999999999999998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.33 Aligned_cols=268 Identities=21% Similarity=0.324 Sum_probs=174.9
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChHHHH----------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 118 RASVILAGLGFTPEMQKRATKHFSGGWRK----------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 118 rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+....|..+|+....+++++.+|||||+| ..+.||.+.|++ .+.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34567888999865568999999999999 456677776654 46799999
Q ss_pred ecCHHHHhccCCcEEEE------eCCeeEEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy208 167 SHDRHFLDSVPTDIFHL------HSQRIDTYRGNYEAFDKIKTEKLKNQQREIEAQRMHREHVQKFIDTFRYNANRASSV 240 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l------~~g~i~~~~G~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 240 (443)
|||++++.. ||+|++| ++|++ ++.|+++++....+. ... ..+
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~-------~~~---------~~~-------------- 570 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDS-------SLT---------GEY-------------- 570 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTT-------CHH---------HHH--------------
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchh-------cch---------hhh--------------
Confidence 999999976 9999999 67777 478999887432110 000 000
Q ss_pred HHHHHHHhcCCCCCCCccccccccccCCCCCCCCCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHH
Q psy208 241 QSKIKQLERLPELKPIEKEVEVVLKFPDTELLSPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 241 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl 320 (443)
+....... .+.........+++++++ ...|+||||+|++|++++|+|+||||||||+
T Consensus 571 ------l~~~~~~~-----------~~~~~~~~~~~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 571 ------LSGKRKIT-----------VNKTRRLPYASLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ------HHSSSCCC-----------CCSSCCCCSSEEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ------hhcccccc-----------cccccccccceEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 00000000 001111112346666553 2479999999999999999999999999997
Q ss_pred ---------HHHHcCCCCCCceEEEcCc---eEE----------------------------------------------
Q psy208 321 ---------KIIMGIISPTAGTRTVHRN---LKF---------------------------------------------- 342 (443)
Q Consensus 321 ---------k~l~G~~~p~~G~i~~~~~---~~i---------------------------------------------- 342 (443)
+++.+...+..+...+.+. ..+
T Consensus 628 ~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~f 707 (916)
T 3pih_A 628 METLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRF 707 (916)
T ss_dssp HHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGG
T ss_pred HHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccc
Confidence 4555544333221111110 011
Q ss_pred ---------------EEeccCcccccc------------------------------cchhHHHHHHHhCCCC-CHHHHH
Q psy208 343 ---------------GYFSQHHVDQLD------------------------------MNLRCVQLLEAAFPGK-PQEEYR 376 (443)
Q Consensus 343 ---------------g~~~Q~~~~~l~------------------------------~~~~~~~~~~~~~~~~-~~~~~~ 376 (443)
|++.++.....+ ...++.+.+. .+... ......
T Consensus 708 s~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~-f~~~~~~~~~~~ 786 (916)
T 3pih_A 708 SFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE-FFKNIPSIKRTL 786 (916)
T ss_dssp CTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH-HTTTCHHHHHHH
T ss_pred cccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH-HHhcchhHHHHH
Confidence 122221100000 0112222221 11111 124566
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC---CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP---NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p---~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.|..+|+......+++.+|||||||||+|||+|+.+| +||||||||+|||+.+++.|.+.|.++
T Consensus 787 ~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 787 QVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 78899999765678999999999999999999999875 799999999999999999999998764
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=293.27 Aligned_cols=161 Identities=24% Similarity=0.425 Sum_probs=139.2
Q ss_pred CeEEEeeeEEEeC-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYV-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+ ++.++|+|+||+|++|++++|+||||||||||||+|+|+++ ++|+|.+++. ..+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 4699999999995 24679999999999999999999999999999999999998 8999998652 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCC-----------CCHHHHHHHHHHHHhc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGS-----------LSGGQKSRVAFARMCM 411 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~-----------LSgGekqRl~lA~al~ 411 (443)
||++|++. +.. .++.+++.. +.....+++.+++..+++. +..++++.. |||||||||+|||||+
T Consensus 97 g~v~Q~~~--lf~-~tv~enl~~-~~~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 97 GVIPQKVF--IFS-GTFRKNLDP-NAAHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp EEESCCCC--CCS-EEHHHHHCT-TCCSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred EEEcCCcc--cCc-cCHHHHhhh-ccccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 99999863 222 477777742 2334567788899999985 577888887 9999999999999999
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 412 AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 412 ~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+|++|||||||++||+.++..+.+.|++.
T Consensus 172 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999764
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=299.98 Aligned_cols=163 Identities=25% Similarity=0.336 Sum_probs=138.0
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 469999999999643 67999999999999999999999999999999999999999999988651 359
Q ss_pred EEeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al 410 (443)
||++|++. +.. .++.+++.... +..+++++.+.++.+++.. ..+ +++.+||||||||++||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral 495 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAME-FIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHH-HHHhCcccccchhcCCCCcCCHHHHHHHHHHHHH
Confidence 99999873 332 48888876433 3445677888888887742 222 34579999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDEL 526 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=299.03 Aligned_cols=163 Identities=25% Similarity=0.287 Sum_probs=138.7
Q ss_pred CeEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|+++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 469999999999643 67999999999999999999999999999999999999999999998652 259
Q ss_pred EEeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhh-----------ccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLAL-----------QFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~-----------~~~~~LSgGekqRl~lA~al 410 (443)
+|++|++. +.. .++.+++.... +...++++.+.++.+++.. ..+ +++.+||||||||++||||+
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral 495 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMD-FINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHH-HHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHH-HHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999874 333 48888886433 3456777888888888742 222 34679999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|++|||||||++||+.+.+.+.+.|.++
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~ 526 (582)
T 3b60_A 496 LRDSPILILDEATSALDTESERAIQAALDEL 526 (582)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred HhCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=276.54 Aligned_cols=154 Identities=23% Similarity=0.346 Sum_probs=114.8
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
++|+++||++.+ +++|+++||+|++|++++|+||||||||||+|+|+|+++|++|+|.+.+ .++|++|++. +.
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSW--IM 111 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCC--CC
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCc--cC
Confidence 469999999863 4799999999999999999999999999999999999999999999876 5899999863 33
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
. .++.+++. .. ......+...+..+++... ...+++.+|||||||||+|||||+.+|++|||||||+
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts 188 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFG 188 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTT
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcc
Confidence 3 37888876 32 1223334445555555321 1123458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy208 425 HLDIETIEALGKAI 438 (443)
Q Consensus 425 ~LD~~s~~~l~~~L 438 (443)
+||+.++..+.+.+
T Consensus 189 ~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 189 YLDVLTEKEIFESC 202 (290)
T ss_dssp TCCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999974
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-33 Score=297.92 Aligned_cols=164 Identities=26% Similarity=0.363 Sum_probs=136.8
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|++ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35999999999964 357999999999999999999999999999999999999999999998752 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. +. ..|+.+++....+...++++.+.+...++... ....+..+||||||||++||||++.
T Consensus 418 ~~v~Q~~~--l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~ 494 (578)
T 4a82_A 418 GLVQQDNI--LF-SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494 (578)
T ss_dssp EEECSSCC--CC-SSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCc--cC-cccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHc
Confidence 99999863 33 33888888654455566777777777665321 1123456899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.+.|.++
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~ 523 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVL 523 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-33 Score=300.12 Aligned_cols=162 Identities=25% Similarity=0.376 Sum_probs=136.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
.|+++||+|+|++++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++. ..+||
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 5999999999976678999999999999999999999999999999999999999999998752 25999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhc-----------cCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQ-----------FVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~-----------~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++....+..+++++.+.+...++. +..++ ...+||||||||++||||++.+
T Consensus 434 v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 434 VLQDTI--LF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp ECTTCC--CC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred EeCCCc--cc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999973 22 348888886443444556677777777663 22333 2368999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|++|||||||++||+.+...+.+.|.++
T Consensus 510 p~illlDEpts~LD~~~~~~i~~~l~~~ 537 (598)
T 3qf4_B 510 PKILILDEATSNVDTKTEKSIQAAMWKL 537 (598)
T ss_dssp CSEEEECCCCTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-32 Score=292.37 Aligned_cols=164 Identities=24% Similarity=0.340 Sum_probs=136.3
Q ss_pred CeEEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 275 PILQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
..|+++||+|+|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 35999999999963 467999999999999999999999999999999999999999999998642 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
+|++|++. +. ..|+.+++....+...++++.+.+...++.. ....+++.+||||||||++||||++.
T Consensus 420 ~~v~Q~~~--lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~ 496 (587)
T 3qf4_A 420 SAVPQETV--LF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVK 496 (587)
T ss_dssp EEECSSCC--CC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCc--Cc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHc
Confidence 99999973 33 3488888764434445666666665555421 12346778999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.+.|.++
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~ 525 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRY 525 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-30 Score=295.31 Aligned_cols=163 Identities=26% Similarity=0.371 Sum_probs=134.8
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
.|+++||+|+|++. .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 59999999999742 47999999999999999999999999999999999999999999998752 259
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChh----------hhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGD----------LALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. +. ..++.+++....+....+++.+.+...++... ....+..+||||||||++||||++.
T Consensus 467 ~~v~Q~~~--l~-~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 467 GVVSQEPV--LF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp EEECSSCC--CC-SSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCc--cC-CccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 99999973 33 34888888755544566666666655544211 1234566899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+++...+.+.|...
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~ 572 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKA 572 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=295.25 Aligned_cols=163 Identities=26% Similarity=0.344 Sum_probs=138.6
Q ss_pred eEEEeeeEEEeCC--CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 276 ILQLSEVNFEYVP--GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~--~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
-|+++||+|+|++ ++++|+|+||+|++|+.+||+||+|||||||+++|.|+++|++|+|.+++. .++
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 4899999999964 358999999999999999999999999999999999999999999999752 369
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhcc
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
||++|++. -.+.|+.+++....+..+++++.+.+...++.... ......+||||||||++||||+++
T Consensus 495 ~~v~Q~~~---Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 495 AVVSQEPA---LFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp EEECSSCC---CCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccCCcce---eeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 99999973 23568888887555566788888888877763221 113446899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.+...+.++|.++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~ 600 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKA 600 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999888653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=276.77 Aligned_cols=160 Identities=23% Similarity=0.277 Sum_probs=124.6
Q ss_pred EEE-eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EEcC--------
Q psy208 277 LQL-SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR---------TVHR-------- 338 (443)
Q Consensus 277 l~~-~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~~-------- 338 (443)
.++ +||+++|++...++.++| +|.+|+++||+||||||||||+|+|+|+++|++|++ .+.+
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 699999964335899999 999999999999999999999999999999999984 1111
Q ss_pred -----ceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 339 -----NLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
...+++++|....... ...++.+.+.... ....+.++|..+|+. ...++++.+|||||||||+||+||+.
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~---~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~ 175 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD---ETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLR 175 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC---SSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh---HHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 1346788876421111 0114444443221 123467889999996 56789999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||||||+.+++.+.+.|+++
T Consensus 176 ~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 204 (538)
T 1yqt_A 176 NATFYFFDEPSSYLDIRQRLNAARAIRRL 204 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999765
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-30 Score=278.81 Aligned_cols=161 Identities=21% Similarity=0.274 Sum_probs=128.8
Q ss_pred eEEE--------eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE---------EEc-
Q psy208 276 ILQL--------SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR---------TVH- 337 (443)
Q Consensus 276 ~l~~--------~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i---------~~~- 337 (443)
+|++ +||+++|++...+|.++| +|.+|++++|+||||||||||+|+|+|+++|++|++ .+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 5788 999999964335899999 999999999999999999999999999999999985 111
Q ss_pred ------------CceEEEEeccCcccccc-cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 338 ------------RNLKFGYFSQHHVDQLD-MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 338 ------------~~~~ig~~~Q~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
....+++++|....... ...++.+++... .....+.++|..+|+. +..++++.+|||||||||
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRV 237 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHH
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHH
Confidence 12346777876321111 112555555421 1123467889999996 578899999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||+||+.+|++|||||||||||+.++..+.+.|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l 274 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=276.18 Aligned_cols=158 Identities=27% Similarity=0.392 Sum_probs=127.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc-CCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG-IISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
.|...|++++|+ ++++|+|+||+|.+|++++|+||||||||||+|+|+| .+ .|. .......++|++|+.. .+.
T Consensus 435 ~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~-~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDID-GTH 508 (986)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCC-CCC
T ss_pred eeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEccccc-ccc
Confidence 466669999995 5789999999999999999999999999999999995 22 121 0011234788888642 234
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
...++.+++....... .+++..+|..+|+..+..++++++|||||||||+||++|+.+|++|||||||||||+.+++.|
T Consensus 509 ~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l 587 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWL 587 (986)
T ss_dssp TTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHH
T ss_pred cCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHH
Confidence 4567777665322122 667889999999976678899999999999999999999999999999999999999999999
Q ss_pred HHHHcc
Q psy208 435 GKAINK 440 (443)
Q Consensus 435 ~~~L~~ 440 (443)
.+.|.+
T Consensus 588 ~~~L~~ 593 (986)
T 2iw3_A 588 VNYLNT 593 (986)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-28 Score=260.13 Aligned_cols=159 Identities=23% Similarity=0.316 Sum_probs=119.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------------
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------------- 338 (443)
+|++++|+.....+++++ .+.+|+++||+||||||||||||+|+|+++|++|+|....
T Consensus 81 ~~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~ 159 (608)
T 3j16_B 81 AHVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM 159 (608)
T ss_dssp TTEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHH
Confidence 367899975556777777 6899999999999999999999999999999999873110
Q ss_pred ---ceEEEEeccCccccc-----ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 339 ---NLKFGYFSQHHVDQL-----DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 339 ---~~~ig~~~Q~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
.....+.+|.. ... ....++.+.+... .......+.+++..+|+. ...++++.+|||||||||+||+||
T Consensus 160 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGe~Qrv~iAraL 236 (608)
T 3j16_B 160 LEDDIKAIIKPQYV-DNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSC 236 (608)
T ss_dssp HHTSCCCEEECCCT-TTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCT-GGGGSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHhhhhhhchhhh-hhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCc-chhCCChHHCCHHHHHHHHHHHHH
Confidence 00111222211 000 0001222222221 223456788899999996 578999999999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
+.+|++|||||||++||+.++..+.+.|+++.
T Consensus 237 ~~~p~llllDEPts~LD~~~~~~l~~~l~~l~ 268 (608)
T 3j16_B 237 VQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL 268 (608)
T ss_dssp HSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG
T ss_pred HhCCCEEEEECcccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-27 Score=250.52 Aligned_cols=157 Identities=23% Similarity=0.246 Sum_probs=114.5
Q ss_pred eeeEEEeCCCCceeeeeeEEEe-CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-----------EcC---------
Q psy208 280 SEVNFEYVPGKPILTNVCLGAT-LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-----------VHR--------- 338 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~-~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-----------~~~--------- 338 (443)
++++.+|+.+ -|+-..|.+. +|+++||+||||||||||+|+|+|+++|++|+|. +.+
T Consensus 3 ~~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~ 80 (538)
T 3ozx_A 3 GEVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80 (538)
T ss_dssp CCEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHH
T ss_pred CCCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHH
Confidence 3577889644 3444445444 9999999999999999999999999999999872 111
Q ss_pred ----ceEEEEeccCccccc-ccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccC
Q psy208 339 ----NLKFGYFSQHHVDQL-DMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 339 ----~~~ig~~~Q~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
...+....|...... ....++.+.+..... ...+..++..+++. ...++++.+|||||||||+||+||+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~ 156 (538)
T 3ozx_A 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLRE 156 (538)
T ss_dssp HHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSC
T ss_pred HhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 112333333221000 011233333332211 22456788889985 577899999999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|++||||||||+||+.++..+.+.|+++.
T Consensus 157 p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 157 ADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998763
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-26 Score=251.25 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=99.5
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHHcCCCCCCceEE-------EcC--
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLL---------------------KIIMGIISPTAGTRT-------VHR-- 338 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLl---------------------k~l~G~~~p~~G~i~-------~~~-- 338 (443)
...+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. +..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 999999999966543 221
Q ss_pred -----ceEEEEeccCcccc-----------------cccchhHHHHHHHh--C--CCCCH----------HHHHHHHhcC
Q psy208 339 -----NLKFGYFSQHHVDQ-----------------LDMNLRCVQLLEAA--F--PGKPQ----------EEYRRQLGGF 382 (443)
Q Consensus 339 -----~~~ig~~~Q~~~~~-----------------l~~~~~~~~~~~~~--~--~~~~~----------~~~~~~L~~~ 382 (443)
...+||++|..... .....++.+++... . ..... .+...++..+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 11234444432100 00111222222110 0 00000 0112347889
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+.....++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..|.+.|+++
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l 250 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 250 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence 987545789999999999999999999999998 99999999999999999999999765
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=213.08 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 396 LSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 396 LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
|||||||||+||++|+.+| ++|||||||||||+.+++.|.+.|+++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~ 344 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA 344 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 6999999999999999999 9999999999999999999999998763
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-27 Score=243.04 Aligned_cols=157 Identities=14% Similarity=0.127 Sum_probs=118.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-e-EEEcC--ceEEEEeccCc
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-T-RTVHR--NLKFGYFSQHH 349 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~-i~~~~--~~~ig~~~Q~~ 349 (443)
.++++++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+++|++| + |.++. ...++|++|+.
T Consensus 116 ~~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~ 188 (460)
T 2npi_A 116 HTMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCI 188 (460)
T ss_dssp CTHHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCC
T ss_pred cchhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccch
Confidence 46789999999884 69999999999999999999999999999999999999 8 88864 34588999875
Q ss_pred ccc-cccchhHHHHHH-HhC-CC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHH--hccCCCe----EEE
Q psy208 350 VDQ-LDMNLRCVQLLE-AAF-PG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARM--CMAAPNF----LVL 419 (443)
Q Consensus 350 ~~~-l~~~~~~~~~~~-~~~-~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~a--l~~~p~l----LiL 419 (443)
... +....++.+++. ... .. .....+..++..+|+.. ..+ +.+|||||||||+||++ |+.+|++ |||
T Consensus 189 ~l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 189 SATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp EEEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 211 111122222220 000 00 11123445677788753 333 88999999999999999 9999999 999
Q ss_pred eC-CCCCCCHHHHHHHHHHHccc
Q psy208 420 DE-PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DE-PTn~LD~~s~~~l~~~L~~~ 441 (443)
|| ||++||+. .+.|.++++++
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~ 287 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL 287 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT
T ss_pred eCCcccccChh-HHHHHHHHHHh
Confidence 99 99999999 77777777654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.7e-26 Score=212.04 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=89.7
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc--------CceEEEEeccCccccc-ccchhH
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH--------RNLKFGYFSQHHVDQL-DMNLRC 359 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~--------~~~~ig~~~Q~~~~~l-~~~~~~ 359 (443)
.+.+|+++ .+|++++|+||||||||||+|+|+|+ +|++|+|... ....+||++|++.+.+ ......
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~ 86 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPL 86 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHH
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHH
Confidence 35688885 89999999999999999999999999 9999998431 1235889998763333 111111
Q ss_pred HHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 360 VQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
...+ ........+..++.. ++ ||||||+|||||+.+|++|||||||++ ++..+.+.|.
T Consensus 87 ~~~~---~~~~~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~ 144 (208)
T 3b85_A 87 HDAL---RDMVEPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLT 144 (208)
T ss_dssp HHHH---TTTSCTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHT
T ss_pred HHHH---HHhccHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHH
Confidence 1111 111122344555544 32 999999999999999999999999999 8888998887
Q ss_pred cc
Q psy208 440 KY 441 (443)
Q Consensus 440 ~~ 441 (443)
++
T Consensus 145 ~l 146 (208)
T 3b85_A 145 RL 146 (208)
T ss_dssp TB
T ss_pred Hh
Confidence 65
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=183.75 Aligned_cols=129 Identities=17% Similarity=0.205 Sum_probs=85.6
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
|+||+|++|++++|+||||||||||+|++.+- ...+......|+++|++.... ......+.+.. .
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~--------~ 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSDFCRGLMSDDENDQT-VTGAAFDVLHY--------I 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHHHHHHHHCSSTTCGG-GHHHHHHHHHH--------H
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccHHHHHHhcCcccchh-hHHHHHHHHHH--------H
Confidence 68999999999999999999999999986532 211222122355666543221 11111221110 1
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH----------------HHHHHHHHH
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE----------------TIEALGKAI 438 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~----------------s~~~l~~~L 438 (443)
... ....|... ........|+|||||++||++++.+|++|+|||||++||+. .+..+.+.|
T Consensus 66 ~~~-~~~~g~~~--~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l 142 (171)
T 4gp7_A 66 VSK-RLQLGKLT--VVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSI 142 (171)
T ss_dssp HHH-HHHTTCCE--EEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHS
T ss_pred HHH-HHhCCCeE--EEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhh
Confidence 111 22234321 22344567999999999999999999999999999999999 558888876
Q ss_pred ccc
Q psy208 439 NKY 441 (443)
Q Consensus 439 ~~~ 441 (443)
.+.
T Consensus 143 ~~l 145 (171)
T 4gp7_A 143 KGL 145 (171)
T ss_dssp TTH
T ss_pred hhH
Confidence 653
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-22 Score=214.27 Aligned_cols=142 Identities=13% Similarity=0.044 Sum_probs=100.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+.++++++++.|++-..+| +..|.+|++++|+|+||||||||+++++|...|. |. ..+.|.+|++..
T Consensus 256 ~~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~------~vi~~~~ee~~~--- 322 (525)
T 1tf7_A 256 QRSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE------RAILFAYEESRA--- 322 (525)
T ss_dssp CCCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC------CEEEEESSSCHH---
T ss_pred cccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC------CEEEEEEeCCHH---
Confidence 4567888887663201233 4589999999999999999999999999998885 53 124455665421
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH-----
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE----- 429 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~----- 429 (443)
....... .+ +....+ +..+|+. ...+.++..|||||+||+++|+++..+|++||+| ||++||..
T Consensus 323 ---~l~~~~~-~~-g~~~~~----~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 323 ---QLLRNAY-SW-GMDFEE----MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp ---HHHHHHH-TT-SCCHHH----HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred ---HHHHHHH-Hc-CCCHHH----HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 1111111 11 222222 2234432 3456778899999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcc
Q psy208 430 TIEALGKAINK 440 (443)
Q Consensus 430 s~~~l~~~L~~ 440 (443)
.++.+.+.++.
T Consensus 392 ~~~~i~~ll~~ 402 (525)
T 1tf7_A 392 FRQFVIGVTGY 402 (525)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887777654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-24 Score=217.69 Aligned_cols=143 Identities=15% Similarity=0.095 Sum_probs=108.9
Q ss_pred CceeeeeeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce--EEEEecc
Q psy208 290 KPILTNVCLGATLES--------------------RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL--KFGYFSQ 347 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge--------------------~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~--~ig~~~Q 347 (443)
+.+++++||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++... ..+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 999999999999999999999999999998765421 1267887
Q ss_pred CcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHH--HHHHHHHHHHhcc----------CCC
Q psy208 348 HHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGG--QKSRVAFARMCMA----------APN 415 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgG--ekqRl~lA~al~~----------~p~ 415 (443)
++. ....++.+...... ....+.+++..+++.. . +..+. ||+| |+||+.||++++. +|+
T Consensus 116 ~~~---~~~ltv~D~~g~~~---~~~~~~~~L~~~~L~~-~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 116 HPN---IPNVVFWDLPGIGS---TNFPPDTYLEKMKFYE-Y-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CSS---CTTEEEEECCCGGG---SSCCHHHHHHHTTGGG-C-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred ccc---cCCeeehHhhcccc---hHHHHHHHHHHcCCCc-c-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 642 11112111110001 1224567888888753 2 33333 9999 9999999999999 999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||++||+.+++.+.+.|+++
T Consensus 187 lllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 187 SDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp HHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred ccccCcccccCCHHHHHHHHHHHHHH
Confidence 99999999999999999998888765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.3e-22 Score=181.70 Aligned_cols=114 Identities=15% Similarity=0.166 Sum_probs=82.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEc-----CceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVH-----RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~-----~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
+++|+||||||||||+|+|+|++... .|..... ....+||++|+.. . .. . +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~-~~--~-------------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE-G-KK--K-------------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT-C-CE--E-------------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc-H-HH--H-------------------H
Confidence 68999999999999999999998522 2322110 1234677777531 0 00 0 0
Q ss_pred HhcCCCCh-hhhhccCCCCCHHHHHHHHHHHH-----hccCCCeEEEeC--CCCCCCHHHHHHHHHHHccc
Q psy208 379 LGGFGVSG-DLALQFVGSLSGGQKSRVAFARM-----CMAAPNFLVLDE--PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 379 L~~~gl~~-~~~~~~~~~LSgGekqRl~lA~a-----l~~~p~lLiLDE--PTn~LD~~s~~~l~~~L~~~ 441 (443)
+..+++.. ...++++.+||||||||++||++ ++.+|++||||| ||++||+.+.+.+.+.|.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~ 129 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC
Confidence 11122211 24567888999999999999996 999999999999 99999999999999998763
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-23 Score=206.51 Aligned_cols=139 Identities=17% Similarity=0.175 Sum_probs=109.1
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEE-----------------------EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLG-----------------------ATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~-----------------------i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
..|+++||++.|. ++++++++. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 42 ~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 42 EQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred CeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 3589999999994 577777764 89999999999999999999999999999987
Q ss_pred ceEEEcCceEEEEeccCcccccccchhHHHHHHHh----CC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH
Q psy208 332 GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA----FP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF 406 (443)
Q Consensus 332 G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~----~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l 406 (443)
|. ..++|++|+.. +... ++.+++... .+ ......+.+.|..++ . ...+.++..|||||+||+++
T Consensus 119 G~------~~v~~v~qd~~--~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~ 187 (312)
T 3aez_A 119 HH------PRVDLVTTDGF--LYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPG 187 (312)
T ss_dssp TC------CCEEEEEGGGG--BCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEE
T ss_pred CC------CeEEEEecCcc--CCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhh
Confidence 74 35899999853 3333 555554211 11 112355677777776 3 23356788999999999999
Q ss_pred HHHhccCCCeEEEeCCCCCCC
Q psy208 407 ARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 407 A~al~~~p~lLiLDEPTn~LD 427 (443)
|++++.+|+|||||||+..+|
T Consensus 188 a~al~~~p~ilIlDep~~~~d 208 (312)
T 3aez_A 188 AEQVVRHPDILILEGLNVLQT 208 (312)
T ss_dssp EEEEECSCSEEEEECTTTTCC
T ss_pred HHHhccCCCEEEECCccccCC
Confidence 999999999999999999986
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-20 Score=190.62 Aligned_cols=53 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred hccCCCCCHHHHHHHHHHHHhc------cCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM------AAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++++.+|||||||||+||+||+ .+|++|||||||+|||+.+++.+.+.|.++.
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~ 332 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE 332 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999 7999999999999999999999999998753
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-23 Score=200.95 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=97.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
.|+++||+|+|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|.+.. +.
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I-------~~~v~q~~~l-f~- 166 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV-------LSFANHKSHF-WL- 166 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE-------ECGGGTTSGG-GG-
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE-------EEEecCcccc-cc-
Confidence 488999999995 67999999999999999999999999999999999998 8988 3466776421 11
Q ss_pred chhHHH-HHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 356 NLRCVQ-LLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 356 ~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
.++.+ ++.. .+... ..+...+..+ +. ...+ +..|||||||| |||++.+|+||| |++||+.+...+
T Consensus 167 -~ti~~~ni~~-~~~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i 232 (305)
T 2v9p_A 167 -ASLADTRAAL-VDDAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRY 232 (305)
T ss_dssp -GGGTTCSCEE-EEEEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGG
T ss_pred -ccHHHHhhcc-Ccccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHH
Confidence 12211 1110 01111 1344555553 32 2223 77999999999 999999999999 999999887766
Q ss_pred H
Q psy208 435 G 435 (443)
Q Consensus 435 ~ 435 (443)
.
T Consensus 233 ~ 233 (305)
T 2v9p_A 233 L 233 (305)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-19 Score=176.17 Aligned_cols=53 Identities=30% Similarity=0.355 Sum_probs=48.5
Q ss_pred hhccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.++..||||||||++||++|+ .+|++|||||||++||+..++.|.+.|.++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 45678899999999999999996 689999999999999999999999998765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-21 Score=183.86 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=88.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~~~Q~~~~~l~~~~~ 358 (443)
..-|+|+||+|.+|++++|+||||||||||+++|+|++ | |.|.++.. ..++|++|++.. + ...+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~-~-~~~~ 84 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTI-F-EDKL 84 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHH-H-HHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHH-H-HHhh
Confidence 35799999999999999999999999999999999998 6 88876211 235677776421 1 1100
Q ss_pred HH-HHH-----HHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHH-----HHHhccCCCeEEEeCCCCCCC
Q psy208 359 CV-QLL-----EAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAF-----ARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 359 ~~-~~~-----~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~l-----A~al~~~p~lLiLDEPTn~LD 427 (443)
.. +.+ .....+.....+.+++...... .. ..+|||||+||++| +++++.+|++++|||||+++|
T Consensus 85 ~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d 159 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LF---EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRN 159 (218)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EE---EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTC
T ss_pred hccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 00 000 0000011234456666653321 11 15789999999999 899999999999999999999
Q ss_pred HHHHHHHHHHHcc
Q psy208 428 IETIEALGKAINK 440 (443)
Q Consensus 428 ~~s~~~l~~~L~~ 440 (443)
..+.+.+.+.|..
T Consensus 160 ~~~~~~i~~~l~~ 172 (218)
T 1z6g_A 160 TENQEQIQKRMEQ 172 (218)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9888888877653
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-20 Score=183.68 Aligned_cols=129 Identities=20% Similarity=0.171 Sum_probs=98.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCccccccc
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDM 355 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~ 355 (443)
+.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. .+++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~ 168 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKA 168 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCH
Confidence 35678899999999999999999999999999999999999987431 14899999753 1455
Q ss_pred chhHHHHHHHh-CCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHH
Q psy208 356 NLRCVQLLEAA-FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETI 431 (443)
Q Consensus 356 ~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~ 431 (443)
..++.+++... ..... ..++..+|+. ...++++.+|| |||++||++++.+|+ +|+|| ||++||+..+
T Consensus 169 ~~~v~e~l~~~~~~~~d----~~lldt~gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~ 238 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ 238 (302)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCCS-SCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH
T ss_pred HHHHHHHHHHHHHcCCc----chHHhcCCCC-cchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH
Confidence 55666665421 11111 1245567765 34567788999 999999999999999 99999 9999999865
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-20 Score=178.99 Aligned_cols=123 Identities=14% Similarity=0.167 Sum_probs=77.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------ceEEEEeccCcccccccchhHHHHHHHh--C-CCCCHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------NLKFGYFSQHHVDQLDMNLRCVQLLEAA--F-PGKPQE 373 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~-~~~~~~ 373 (443)
.++|+||||||||||+|+|+|+..|++|+|.+.+ ...++|++|++. +....++.+++... . .....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~--~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG--VKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC--CcCCceEEechhhhhhcccHHHHH
Confidence 4899999999999999999999999999987643 246999999753 22233332222110 0 111122
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.+..++. ....+..+.+|||||+||+++||+++. +++|||||.+||+...+.+..+
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence 3333333 244566778999999999999999886 9999999999999986655443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-19 Score=181.50 Aligned_cols=129 Identities=20% Similarity=0.178 Sum_probs=98.6
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccc
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMN 356 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~ 356 (443)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. .+++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~-~~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS-SCCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEeccc-ccChh
Confidence 3578889999999999999999999999999999999999977421 24899999752 14455
Q ss_pred hhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHH
Q psy208 357 LRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIE 432 (443)
Q Consensus 357 ~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~ 432 (443)
.++.+++.... .... ..++..+|+. ...++++.+|| +||++||++++.+|+ +|+|| ||++||+..+.
T Consensus 227 ~tv~e~l~~~~~~~~d----~~lldt~Gl~-~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~ 296 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA 296 (359)
T ss_dssp HHHHHHHHHHHHTTCS----EEEEECCCCS-SCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH
T ss_pred hhHHHHHHHHHhCCCH----HHHHHhcCCC-hhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH
Confidence 56666654211 1111 1235566764 34567788899 999999999999999 99999 99999998653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-19 Score=176.35 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~ 370 (443)
++++++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+...+. +++.. .
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~-~------------------- 217 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHK-N------------------- 217 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCS-S-------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccch-h-------------------
Confidence 48899999999999999999999999999999999999999999876532110 00000 0
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
.+++- .. |||+||++||++|..+|++|||||||+
T Consensus 218 ----------~i~~~--------~g--gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 218 ----------YTQLF--------FG--GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp ----------EEEEE--------CB--TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred ----------EEEEE--------eC--CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 00000 00 899999999999999999999999998
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-17 Score=164.28 Aligned_cols=53 Identities=32% Similarity=0.431 Sum_probs=47.9
Q ss_pred hhccCCCCCHHHHH------HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKS------RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekq------Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.++++..||||||| |+++|++++.+|++|||||||+|||+.++..+.+.|.++
T Consensus 242 ~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~ 300 (339)
T 3qkt_A 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 300 (339)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHT
T ss_pred CcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 35688999999999 678888899999999999999999999999999998765
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-18 Score=159.27 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=84.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
|++++|+||||||||||+++|+|+++ ++| |.+++ ...+||++|+.... ..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~----~~--------------- 59 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGT----RG--------------- 59 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSC----EE---------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccc----ee---------------
Confidence 78999999999999999999999998 888 65432 23567777753110 00
Q ss_pred HHHHHHhcCCCCh------hhhhccCCCCCHHHHHHHH-HHH---HhccCCCeEEEeC--CCCCCCHHHHHHHHHHHccc
Q psy208 374 EYRRQLGGFGVSG------DLALQFVGSLSGGQKSRVA-FAR---MCMAAPNFLVLDE--PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 ~~~~~L~~~gl~~------~~~~~~~~~LSgGekqRl~-lA~---al~~~p~lLiLDE--PTn~LD~~s~~~l~~~L~~~ 441 (443)
.++.+++.. ....++...+|+|||+++. +++ |++.+|++||||| ||+++|....+.|.++|..+
T Consensus 60 ----~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 60 ----PLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp ----EEEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred ----hhhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 111222211 1234455679999999884 444 5789999999999 99999999999999999876
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-18 Score=173.50 Aligned_cols=146 Identities=13% Similarity=0.123 Sum_probs=107.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++++++++++.|+.+..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.+.+.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4689999999996456799999 999999999999999999999999999999999999877542
Q ss_pred ----eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 340 ----LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 340 ----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
..++|++|+.. .+....++.++.... .++....+-.-...-..+..||+|| ||++|| +.+|+
T Consensus 209 ~~l~r~i~~v~q~~~-~~~~~~~v~~~~~~~---------ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 209 DGRARSVVIAAPADV-SPLLRMQGAAYATRI---------AEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp HHHHTEEEEEECTTS-CHHHHHHHHHHHHHH---------HHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH---TTCCC
T ss_pred cccCceEEEEECCCC-CHHHHHHHHHHHHHH---------HHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH---hCCCc
Confidence 24789998532 223333443333210 0111111100001112366799999 999999 88888
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+ |++||+.+...+.+.|.+.
T Consensus 275 ~------t~glD~~~~~~l~~ll~r~ 294 (438)
T 2dpy_A 275 A------TKGYPPSVFAKLPALVERA 294 (438)
T ss_dssp C------SSSCCTTHHHHHHHHHTTC
T ss_pred c------cccCCHHHHHHHHHHHHHH
Confidence 8 9999999999999998765
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-18 Score=154.84 Aligned_cols=161 Identities=16% Similarity=0.157 Sum_probs=96.5
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC-----CCCCceEEEcCce----EEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII-----SPTAGTRTVHRNL----KFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~-----~p~~G~i~~~~~~----~ig~~~ 346 (443)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|++...... .+.+++
T Consensus 3 ~l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp --------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred chhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 588999999995 367887 889999999999999999999999999998 7888876431100 111111
Q ss_pred cCcccc---cccc-----hhHH-HHHHH--h----------CCCCC--HHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 347 QHHVDQ---LDMN-----LRCV-QLLEA--A----------FPGKP--QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 347 Q~~~~~---l~~~-----~~~~-~~~~~--~----------~~~~~--~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
- +... .... .... ..+.. . ..... ...+..++...++..-....++..+|+||+||
T Consensus 79 t-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 79 L-PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp C-CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred C-cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 0 0000 0000 0011 11110 0 00111 22455566666765333456778899999999
Q ss_pred -HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 -VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 -l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+..+++++.+|.++++||||+++|..+++.+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999888654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=183.41 Aligned_cols=134 Identities=18% Similarity=0.259 Sum_probs=89.9
Q ss_pred CCeEEEee-----eEEEeCCCCceeeeeeEEEeC-------CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceE
Q psy208 274 PPILQLSE-----VNFEYVPGKPILTNVCLGATL-------ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK 341 (443)
Q Consensus 274 ~~~l~~~~-----l~~~y~~~~~il~~vsl~i~~-------Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ 341 (443)
.++|+++| |++.|.++..+++|++|++.+ |++++|+||||||||||||+| |++.+- ..
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------aq 817 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------AQ 817 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------HT
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------hh
Confidence 45799999 999995456899999999987 999999999999999999999 987652 13
Q ss_pred EE-EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 342 FG-YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 342 ig-~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
+| |+||+.. .+ ++.+. ++..+|.. +...+..+++|+++++ +++|++++.+|.++|||
T Consensus 818 iG~~Vpq~~~-~l----~v~d~---------------I~~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLD 875 (1022)
T 2o8b_B 818 MGCYVPAEVC-RL----TPIDR---------------VFTRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVD 875 (1022)
T ss_dssp TTCCEESSEE-EE----CCCSB---------------EEEECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEE
T ss_pred eeEEeccCcC-CC----CHHHH---------------HHHHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEE
Confidence 45 7888642 11 11110 12234443 2333455678887775 99999999999999999
Q ss_pred CCCCCCCHHHH-HHHHHHHc
Q psy208 421 EPTNHLDIETI-EALGKAIN 439 (443)
Q Consensus 421 EPTn~LD~~s~-~~l~~~L~ 439 (443)
|||+|+|+... ..+...|.
T Consensus 876 Ep~~Gtd~~dg~~~~~~il~ 895 (1022)
T 2o8b_B 876 ELGRGTATFDGTAIANAVVK 895 (1022)
T ss_dssp CTTTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHH
Confidence 99999998874 33444443
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.3e-18 Score=162.38 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-CceEEEEeccCcccccccchhHHHHHHHh
Q psy208 288 PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-RNLKFGYFSQHHVDQLDMNLRCVQLLEAA 366 (443)
Q Consensus 288 ~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~-~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~ 366 (443)
+++++|+|+||++.+|+++||+||||||||||+++|+|++ |.+.+. ....++|++|+. +....+..+.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 3567999999999999999999999999999999999976 433221 123588999874 22233444433221
Q ss_pred CC--C------CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 367 FP--G------KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 367 ~~--~------~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
.. . .....+.+.|..+. .....++..||+||+||+.+ ++++.+|+++|||||....+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 11 1 12233455555431 23456788999999999988 5888899999999998887754
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-18 Score=162.07 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=83.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEcCceEEEEeccCcccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVHRNLKFGYFSQHHVDQLD 354 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~~~~ig~~~Q~~~~~l~ 354 (443)
+++++++++. ++|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|.+.+. .++|++|......
T Consensus 5 ~~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~-~i~~~~~~~~~~v- 75 (261)
T 2eyu_A 5 IPEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED-PIEYVFKHKKSIV- 75 (261)
T ss_dssp -CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES-SCCSCCCCSSSEE-
T ss_pred CCChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC-cceeecCCcceee-
Confidence 4567777742 5899999 8999999999999999999999999999998 999876432 2345544321100
Q ss_pred cchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 355 MNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
.. ..+|+.. ..| |++||++|..+|++||||||| |+++...+
T Consensus 76 -------------~q----------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~ 116 (261)
T 2eyu_A 76 -------------NQ----------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETA 116 (261)
T ss_dssp -------------EE----------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH
T ss_pred -------------eH----------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH
Confidence 00 0233321 222 899999999999999999999 99987765
Q ss_pred HHH
Q psy208 435 GKA 437 (443)
Q Consensus 435 ~~~ 437 (443)
.+.
T Consensus 117 l~~ 119 (261)
T 2eyu_A 117 LRA 119 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-17 Score=163.26 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=99.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------------
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN--------------- 339 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--------------- 339 (443)
++++++++++.|+.+..+++++ |.|.+|++++|+||||||||||+++|+|+.+|+.|.+.+.+.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4689999999996456799999 999999999999999999999999999999999998765321
Q ss_pred ---eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCe
Q psy208 340 ---LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNF 416 (443)
Q Consensus 340 ---~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~l 416 (443)
..+.+++|.... ........+. ...+.+++...+-.--..-..+..||+|| ||+++| +.+|++
T Consensus 123 ~~~~~v~~~~~~~~~---~~~r~~~~~~-------~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 123 TLSKCVLVVTTSDRP---ALERMKAAFT-------ATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp HHTTEEEEEECTTSC---HHHHHHHHHH-------HHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred hhhceEEEEECCCCC---HHHHHHHHHH-------HHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 013344432110 0000000000 00011111111100000114678899999 899999 577877
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 417 LVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 417 LiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||+.....+.+.+.+.
T Consensus 189 ------t~Gldp~~~~~l~~ller~ 207 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERA 207 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTC
T ss_pred ------ccCCCHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.3e-16 Score=173.20 Aligned_cols=128 Identities=15% Similarity=0.144 Sum_probs=83.3
Q ss_pred eEEEeeeEEEe-----C-CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcCceEEEEeccC
Q psy208 276 ILQLSEVNFEY-----V-PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y-----~-~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~~~~ig~~~Q~ 348 (443)
.|.+++...-+ + +++.+++|+||++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS--
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH--
Confidence 46666654322 1 246799999999999999999999999999999999754211 11110000001112111
Q ss_pred cccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCH
Q psy208 349 HVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDI 428 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~ 428 (443)
.++..+|.. +...+.++.+|+|+++++.++++ +.+|++|||||||+|||+
T Consensus 718 ----------------------------~i~~~ig~~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 718 ----------------------------GIFTRMGAA-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ----------------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred ----------------------------HHHHhCChH-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 012223332 23445667899999999999998 899999999999999999
Q ss_pred HHHHHHH
Q psy208 429 ETIEALG 435 (443)
Q Consensus 429 ~s~~~l~ 435 (443)
.....+.
T Consensus 768 ~~~~~i~ 774 (918)
T 3thx_B 768 HDGIAIA 774 (918)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888776
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-16 Score=155.58 Aligned_cols=52 Identities=23% Similarity=0.089 Sum_probs=48.1
Q ss_pred hccCC-CCCHHHHHHHHHHHHhc---------cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVG-SLSGGQKSRVAFARMCM---------AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~-~LSgGekqRl~lA~al~---------~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.|.++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~ 320 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV 320 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc
Confidence 35677 79999999999999999 899999999999999999999999998764
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=6.3e-16 Score=169.39 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=92.1
Q ss_pred eEEEeeeEEEeC--CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccc
Q psy208 276 ILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQ 352 (443)
Q Consensus 276 ~l~~~~l~~~y~--~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~ 352 (443)
.|.+++...-.- +++.+++|+||+ |++++|+||||||||||||+|+|+.. |+.|.+.......+++++|-.
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~--- 623 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIY--- 623 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhh---
Confidence 466766633220 235789999999 99999999999999999999999874 778875433334566665411
Q ss_pred cccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeCC---CCCCC
Q psy208 353 LDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDEP---TNHLD 427 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDEP---Tn~LD 427 (443)
...+..+. ....+|+|+++++.+++++ +.+|+++||||| |++||
T Consensus 624 --~~~~~~d~-----------------------------l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD 672 (765)
T 1ewq_A 624 --TRIGASDD-----------------------------LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLD 672 (765)
T ss_dssp --EECCC-----------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHH
T ss_pred --ccCCHHHH-----------------------------HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcC
Confidence 11111110 0124799999999999999 999999999999 99999
Q ss_pred HHHH-HHHHHHHcc
Q psy208 428 IETI-EALGKAINK 440 (443)
Q Consensus 428 ~~s~-~~l~~~L~~ 440 (443)
..+. ..+.+.|.+
T Consensus 673 ~~~~~~~i~~~L~~ 686 (765)
T 1ewq_A 673 GVAIATAVAEALHE 686 (765)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 9886 467777653
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-16 Score=170.77 Aligned_cols=120 Identities=17% Similarity=0.144 Sum_probs=80.0
Q ss_pred eEEEeeeEEEeC----CCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHH--------HcCCCCCCceEEEcCceEEE
Q psy208 276 ILQLSEVNFEYV----PGKPILTNVCLGATLESRICIVGDNGAGKTTLLKII--------MGIISPTAGTRTVHRNLKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~----~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l--------~G~~~p~~G~i~~~~~~~ig 343 (443)
.+.+++...-+- +++.+++|++|++.+|++++|+||||||||||||+| .|...|.++. .++
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~-------~~~ 703 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA-------EVS 703 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE-------EEE
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc-------cch
Confidence 456655443221 235689999999999999999999999999999999 6655554322 122
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHh--ccCCCeEEEeC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMC--MAAPNFLVLDE 421 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al--~~~p~lLiLDE 421 (443)
.+.+ ++..+|.. + .....+|+|+.+++.+|+++ +.+|+++||||
T Consensus 704 ~~d~------------------------------i~~~ig~~-d---~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDE 749 (934)
T 3thx_A 704 IVDC------------------------------ILARVGAG-D---SQLKGVSTFMAEMLETASILRSATKDSLIIIDE 749 (934)
T ss_dssp CCSE------------------------------EEEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred HHHH------------------------------HHHhcCch-h---hHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeC
Confidence 1110 11222322 1 12245777777777777777 89999999999
Q ss_pred CCCCCCHHHHHHHHH
Q psy208 422 PTNHLDIETIEALGK 436 (443)
Q Consensus 422 PTn~LD~~s~~~l~~ 436 (443)
||+|+|+.....+..
T Consensus 750 p~~GlD~~~~~~i~~ 764 (934)
T 3thx_A 750 LGRGTSTYDGFGLAW 764 (934)
T ss_dssp CSCSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999988777733
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-18 Score=159.25 Aligned_cols=129 Identities=14% Similarity=0.098 Sum_probs=93.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCC---CCCHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP---GKPQEEYR 376 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~ 376 (443)
..+|+++||+||||||||||+++|+|++.| .++|++|+.........+..+.....+. ......+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYL 71 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHH
Confidence 468999999999999999999999998765 4788888753221122333333321111 12345566
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHH----HHHHHHHHhccCCCeEEEeCCCCC-------CCHHHHHHHHHHHcc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQK----SRVAFARMCMAAPNFLVLDEPTNH-------LDIETIEALGKAINK 440 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGek----qRl~lA~al~~~p~lLiLDEPTn~-------LD~~s~~~l~~~L~~ 440 (443)
+.+..+++. +....++..+|+|++ ||+++|++++.+|.++++||||++ ||+.....+.+.+.+
T Consensus 72 ~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r 145 (211)
T 3asz_A 72 EHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKR 145 (211)
T ss_dssp HHHHHHHTT-CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 777777664 345678889999974 688999999999999999999999 999888877777653
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-18 Score=165.83 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=66.0
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC-CCCCCceEEEcC--------ceEEEEeccCcc
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI-ISPTAGTRTVHR--------NLKFGYFSQHHV 350 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-~~p~~G~i~~~~--------~~~ig~~~Q~~~ 350 (443)
.||++.|+ ++.++++++|+| +|+|+||||||||+++|+|. +.|++| +...+ ...+++++|...
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~ 73 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERG 73 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCC
Confidence 57899995 578999999988 99999999999999999998 888888 43211 123567776532
Q ss_pred cccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC-CCHH
Q psy208 351 DQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH-LDIE 429 (443)
Q Consensus 351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~-LD~~ 429 (443)
. ....++.+...........+....+... + .+..++++..+|||+|||+.+||+++ +|++||||++ ||+.
T Consensus 74 ~--~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l-~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~ 144 (301)
T 2qnr_A 74 V--KLRLTVVDTPGYGDAINCRDCFKTIISY--I-DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPL 144 (301)
T ss_dssp C--CEEEEEEEEC-----------CTTHHHH--H-HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHH
T ss_pred c--ccCcchhhhhhhhhhcCcHHHHHHHHHH--H-HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHH
Confidence 1 1111111100000000000011111111 0 12345778899999999999998885 9999999986 9998
Q ss_pred HHHHHH
Q psy208 430 TIEALG 435 (443)
Q Consensus 430 s~~~l~ 435 (443)
..+.+.
T Consensus 145 ~~~~l~ 150 (301)
T 2qnr_A 145 DVAFMK 150 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 864443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-18 Score=160.21 Aligned_cols=136 Identities=14% Similarity=0.083 Sum_probs=78.1
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc-------CceEEEEeccCcccccccchhHHHH
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH-------RNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~-------~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
.++++| .+|.+|++++|+||||||||||+|+|+|++++..+.+... ....++|++|++.. ....+..+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~--~~~~~~~~~ 84 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTR--FQQLIDQGE 84 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHH--HHHHHHTTC
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHH--HHHHHhcCC
Confidence 457777 7999999999999999999999999999986332221110 11247788887521 111111111
Q ss_pred HH------H--hCCCCCHHHHHHH----------HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC
Q psy208 363 LE------A--AFPGKPQEEYRRQ----------LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 363 ~~------~--~~~~~~~~~~~~~----------L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn 424 (443)
+. . ...+.....+.+. +..+|+. ...++++..|| +|+.+|++++|||||+
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS-----------~l~~~p~~~~LDep~~ 152 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT-----------VFLAPPSWQDLQARLI 152 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE-----------EEEECSCHHHHHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE-----------EEEECCCHHHHHHHHH
Confidence 10 0 0001112222222 2233332 34456777777 8999999999999999
Q ss_pred CC----CHHHHHHHHHHHccc
Q psy208 425 HL----DIETIEALGKAINKY 441 (443)
Q Consensus 425 ~L----D~~s~~~l~~~L~~~ 441 (443)
++ |+..+..+.+.+.++
T Consensus 153 ~l~~~~d~~~~~~l~~~l~~l 173 (207)
T 1znw_A 153 GRGTETADVIQRRLDTARIEL 173 (207)
T ss_dssp TTSCSCHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHH
Confidence 98 788888888877654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-15 Score=149.39 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=83.6
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEEEc-Cce-------EEEEeccCcccccccchhHH
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-TRTVH-RNL-------KFGYFSQHHVDQLDMNLRCV 360 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~-~~~-------~ig~~~Q~~~~~l~~~~~~~ 360 (443)
.++|+++++.|.+|++++|+||||||||||+++|+|...|++| .|.+. ... ++.++.+.. .. ...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~----~~--~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV----RL--RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC----CG--GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC----Ch--hhc
Confidence 3589999999999999999999999999999999999999877 44321 100 000001100 00 000
Q ss_pred HHHHH-hCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHH-HHHHHHHHHhccCCCeEEEeCCCC---C---CCH-HH
Q psy208 361 QLLEA-AFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQ-KSRVAFARMCMAAPNFLVLDEPTN---H---LDI-ET 430 (443)
Q Consensus 361 ~~~~~-~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGe-kqRl~lA~al~~~p~lLiLDEPTn---~---LD~-~s 430 (443)
..+.. ... ......+..++....+. ....+..+|.++ ++|+. |+++..+|++|||||||+ + +|. ..
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 96 DSLKREIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred cccccCCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 00000 000 00011122333333321 223346789999 66666 999999999999999999 4 455 56
Q ss_pred HHHHHHHHccc
Q psy208 431 IEALGKAINKY 441 (443)
Q Consensus 431 ~~~l~~~L~~~ 441 (443)
...+.+.|+++
T Consensus 172 ~~~i~~~L~~l 182 (296)
T 1cr0_A 172 IDNLMTKLKGF 182 (296)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66677766543
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.1e-16 Score=159.96 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=80.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce--EEEc-----CceEEEEecc
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--RTVH-----RNLKFGYFSQ 347 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~--i~~~-----~~~~ig~~~Q 347 (443)
.+|.++||+++|+ ++.+++++||+| +|+|+||||||||+++|+|...|+.|. +.+. ....++|++|
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 4689999999995 578999999997 999999999999999999998765441 1110 1124677777
Q ss_pred CcccccccchhHHHHHHH--hCCC-CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC---eEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEA--AFPG-KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN---FLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~--~~~~-~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~---lLiLDE 421 (443)
.... ....++.+.... .... ..-..+...+. ..++.++++|++||++++.+|+ +|++||
T Consensus 83 ~~~~--~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL~lde 147 (418)
T 2qag_C 83 EGGV--QLLLTIVDTPGFGDAVDNSNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIA 147 (418)
T ss_dssp ------CEEEEEEECC-----------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECC
T ss_pred cCCc--ccceeeeechhhhhhccchhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEec
Confidence 5321 111111111100 0000 00011111111 1355677889999999999999 999999
Q ss_pred CC-CCCCHHHHHHHHH
Q psy208 422 PT-NHLDIETIEALGK 436 (443)
Q Consensus 422 PT-n~LD~~s~~~l~~ 436 (443)
|| ++||+...+.+..
T Consensus 148 Pt~~~L~~~d~~~lk~ 163 (418)
T 2qag_C 148 PSGHGLKPLDIEFMKR 163 (418)
T ss_dssp C-CCSCCHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHH
Confidence 99 6999988655543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-17 Score=170.05 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=91.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHH--HHcCCCCCCceEEEcCc----------eEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCL-GATLESRICIVGDNGAGKTTLLKI--IMGIISPTAGTRTVHRN----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~--l~G~~~p~~G~i~~~~~----------~~i 342 (443)
+++.+++.+ |+++.++|+++|| .|.+|++++|+||||||||||+++ ++|+++|++|.|++... ..+
T Consensus 12 ~~~~~~~~~-~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~ 90 (525)
T 1tf7_A 12 NSEHQAIAK-MRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSF 90 (525)
T ss_dssp --CCSSCCE-ECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred Ccccccccc-ccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHc
Confidence 456666764 4456789999999 999999999999999999999999 78999999999987542 124
Q ss_pred EEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
||++|++........ ..... . .....++..+++. +..++.+..||+| +|++++||||
T Consensus 91 g~~~q~~~~~~~l~~-------~~~~~-~-~~~~~~l~~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 91 GWDLAKLVDEGKLFI-------LDASP-D-PEGQEVVGGFDLS-ALIERINYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp TCCHHHHHHTTSEEE-------EECCC-C-SSCCSCCSSHHHH-HHHHHHHHHHHHH-------------TCSEEEEECS
T ss_pred CCChHHhhccCcEEE-------EecCc-c-cchhhhhcccCHH-HHHHHHHHHHHHc-------------CCCEEEECCH
Confidence 555554321000000 00000 0 0001112222221 2334445555555 5889999999
Q ss_pred CCC-----CCHHHHHHHHHHHccc
Q psy208 423 TNH-----LDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~-----LD~~s~~~l~~~L~~~ 441 (443)
|+. ||+..++.|.+.++.+
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARL 171 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHH
Confidence 984 6899999999888754
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-14 Score=137.95 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=85.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
.|.+|++++|+||||||||||++.|++... .|.+..+. ...+.|+..+.. .. .....+...........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~~---~~~~r~~~~g~~~~~~~ 98 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--PT---AIHHRLHALGAHLSAEE 98 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--HH---HHHHHHHHHHTTSCHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--HH---HHHHHHHHHHhhcChhh
Confidence 378999999999999999999999998654 34332211 234667665421 11 11111111111223444
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC--CCCHHHH---HHHHHHHccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN--HLDIETI---EALGKAINKY 441 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn--~LD~~s~---~~l~~~L~~~ 441 (443)
...++..+++. +..++++..||+|+.+++ ++++.+|+++|+||||+ ++|.... ..+.+.|..+
T Consensus 99 ~~~~~~~l~l~-~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l 166 (279)
T 1nlf_A 99 RQAVADGLLIQ-PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAI 166 (279)
T ss_dssp HHHHHHHEEEC-CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHH
T ss_pred hhhccCceEEe-ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHH
Confidence 55567777664 345678999999997765 57778999999999999 9997443 5555555543
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-15 Score=145.38 Aligned_cols=131 Identities=20% Similarity=0.228 Sum_probs=85.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---cCCCCCCceEEEcCc-------eEEEEeccCcccccccchhHHHHHHHh-----
Q psy208 302 LESRICIVGDNGAGKTTLLKIIM---GIISPTAGTRTVHRN-------LKFGYFSQHHVDQLDMNLRCVQLLEAA----- 366 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i~~~~~-------~~ig~~~Q~~~~~l~~~~~~~~~~~~~----- 366 (443)
++++++|+||||||||||+++|+ |+..|+.|++.+... ..+++++|+. .+.+..++.+.+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 999999998755321 1122334432 122333433333210
Q ss_pred -----CCC--CCHHHHHHHHhcCCCC-------------hhhhhccCCCCCHHHHHHHHHHHHh-ccCCCeEEEe----C
Q psy208 367 -----FPG--KPQEEYRRQLGGFGVS-------------GDLALQFVGSLSGGQKSRVAFARMC-MAAPNFLVLD----E 421 (443)
Q Consensus 367 -----~~~--~~~~~~~~~L~~~gl~-------------~~~~~~~~~~LSgGekqRl~lA~al-~~~p~lLiLD----E 421 (443)
..+ ....++..+.....+. ....++++..||| |+ +++ +.+|++++|| |
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccc
Confidence 001 1222333332211211 2234677889999 65 667 9999999999 9
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||..+.+.+.+.|..|
T Consensus 177 P~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHH
Confidence 99999999999988888765
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=152.56 Aligned_cols=113 Identities=13% Similarity=0.044 Sum_probs=69.9
Q ss_pred CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
++.+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........+++++|- ....+..+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i-----~~~~~~~d------ 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRI-----FTRVGAAD------ 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEE-----EEEEC---------
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHH-----HhhCCHHH------
Confidence 45799999999 9999999999999999999999999742 23342111112234444331 11111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l 434 (443)
......+.+|+++++ ++.+...+.+|+++||||||+|+|+.....+
T Consensus 662 --------------------~l~~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i 707 (800)
T 1wb9_A 662 --------------------DLASGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL 707 (800)
T ss_dssp ----------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred --------------------HHHhhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence 111223456777764 4444556899999999999888777555443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.45 E-value=7e-16 Score=165.73 Aligned_cols=140 Identities=17% Similarity=0.282 Sum_probs=74.5
Q ss_pred CeEEEeeeEEEeCCC-Cceeeee----------eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceEEEcC----
Q psy208 275 PILQLSEVNFEYVPG-KPILTNV----------CLGATLESRICIVGDNGAGKTTLLKIIMGIISP-TAGTRTVHR---- 338 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~-~~il~~v----------sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i~~~~---- 338 (443)
+.+.++|+++.|+.. +++++.+ +|+++. +||+|||||||||||++|+|++.| ++|.|++.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 358899999999532 2455444 355654 999999999999999999999988 799876532
Q ss_pred ----------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 339 ----------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 339 ----------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
...+||++|++. +....++.+++.. ....+...+ ..+| ++++.++.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~--l~~~~tv~e~i~~---------~~~~~~~~~----------~~~s---~~~i~l~i 141 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIE--ISDASEVEKEINK---------AQNAIAGEG----------MGIS---HELITLEI 141 (608)
T ss_dssp EEECSSSSCCEEEESCC---CC--CCCHHHHHTTHHH---------HHHHHHCSS----------SCCC---SCCEEEEE
T ss_pred EecCCccccceeEEeeeccccc--CCCHHHHHHHHHH---------HHHHhcCCc----------cccc---hHHHHHHh
Confidence 235788888742 3333344333321 111111111 0011 12223333
Q ss_pred HhccCCCeEEEeCC------CCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEP------TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEP------Tn~LD~~s~~~l~~~L~~~ 441 (443)
+....|+++|+||| |++||+..+..+.+.+..|
T Consensus 142 ~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~ 180 (608)
T 3szr_A 142 SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKY 180 (608)
T ss_dssp EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHH
T ss_pred cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHH
Confidence 44568999999999 9999999999999988875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-13 Score=128.05 Aligned_cols=138 Identities=12% Similarity=0.038 Sum_probs=84.8
Q ss_pred CCceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 289 GKPILTNVCL-GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 289 ~~~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
+.+.|+++.. .|.+|++++|+||||||||||++.|++...+.+|.+.+ +..+.. . ......+.. .
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~--------~~~~~~----~-~~~~~~~~~-~ 73 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY--------VTTEES----R-DSIIRQAKQ-F 73 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE--------EESSSC----H-HHHHHHHHH-T
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE--------EEcccC----H-HHHHHHHHH-h
Confidence 3567888887 89999999999999999999999999988777665533 322210 0 011111111 1
Q ss_pred CCCCHHHHH-HHHhcCCCChhh--hhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCC--CHHHHHHHHHHHcc
Q psy208 368 PGKPQEEYR-RQLGGFGVSGDL--ALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHL--DIETIEALGKAINK 440 (443)
Q Consensus 368 ~~~~~~~~~-~~L~~~gl~~~~--~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~L--D~~s~~~l~~~L~~ 440 (443)
..... ... ..+..+...... ........|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|.+
T Consensus 74 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~ 152 (235)
T 2w0m_A 74 NWDFE-EYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKR 152 (235)
T ss_dssp TCCCG-GGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHH
T ss_pred cchHH-HHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHH
Confidence 00000 000 000000000000 000113459999998888888788999 99999999888 99888888777765
Q ss_pred c
Q psy208 441 Y 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 153 ~ 153 (235)
T 2w0m_A 153 V 153 (235)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-13 Score=131.89 Aligned_cols=80 Identities=18% Similarity=0.138 Sum_probs=63.3
Q ss_pred HHHHHHHHhCC-CChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 117 ARASVILAGLG-FTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lg-l~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
.++..++..+| +.+ ..++++.+||||||| .+...+.+.|++ .+.|||+|
T Consensus 117 ~~~~~~l~~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~v 195 (240)
T 1ji0_A 117 RDLEWIFSLFPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195 (240)
T ss_dssp HHHHHHHHHCHHHHT-TTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHcccHhh-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 46677788884 754 468899999999999 455566665543 46799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 196 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 226 (240)
T 1ji0_A 196 EQNALGALKVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp ESCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999999996 45776554
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=131.21 Aligned_cols=139 Identities=12% Similarity=0.161 Sum_probs=96.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC--------------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH--------------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTI 83 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~--------------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l 83 (443)
++|.+.+.|...|+ +|+|.+... -+|||++|++.. ...|+.+.+... +
T Consensus 68 STLlr~i~GL~~p~----~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~------~------- 130 (366)
T 3tui_C 68 STLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP------L------- 130 (366)
T ss_dssp HHHHHHHHTSSCCS----EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH------H-------
T ss_pred HHHHHHHhcCCCCC----ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH------H-------
Confidence 45556666655554 589876420 259999999865 445666554321 0
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------
Q psy208 84 TQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------- 146 (443)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------- 146 (443)
.+ .+ ....+...|+.++|+.+|+.+ ..++++++|||||||
T Consensus 131 --~~-~~-------------------~~~~~~~~~v~~lL~~vgL~~-~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLl 187 (366)
T 3tui_C 131 --EL-DN-------------------TPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLC 187 (366)
T ss_dssp --HH-SC-------------------CCHHHHHHHHHHHHHHHTCGG-GTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEE
T ss_pred --Hh-cC-------------------CCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 00 00 011123458899999999985 468999999999999
Q ss_pred ---------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ---------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ---------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.| ++.+.|||+||||.+++..+||+|++|++|++. ..|...+.
T Consensus 188 DEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv-~~g~~~ev 251 (366)
T 3tui_C 188 DQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELI-EQDTVSEV 251 (366)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEE-ECCBHHHH
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 3444444444 345889999999999999999999999999996 56886654
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-12 Score=127.44 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=66.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh----hCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ----NWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~----~~~~tvii 165 (443)
..++.++|..+|+.+ ..++++.+||||||| .+...+.+.|+ +.+.|||+
T Consensus 121 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~ 199 (275)
T 3gfo_A 121 RKRVDNALKRTGIEH-LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIII 199 (275)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-hhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEE
Confidence 457899999999975 568999999999999 34444444443 34789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||+|+.|++|++. +.|+..+..
T Consensus 200 vtHdl~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 232 (275)
T 3gfo_A 200 ATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVF 232 (275)
T ss_dssp EESCCSSGGGGCSEEEEEETTEEE-EEECHHHHT
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999996 568876653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=125.13 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=93.8
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMS 97 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 97 (443)
++|++.+.|.+.| ++|+|.+.+ +++|++|++.. ...|+.+.+.-... ...+..
T Consensus 45 STLl~~l~Gl~~p----~~G~I~~~~--~i~~v~q~~~~~~~~tv~enl~~~~~---------------~~~~~~----- 98 (253)
T 2nq2_C 45 STLLDLLLGIHRP----IQGKIEVYQ--SIGFVPQFFSSPFAYSVLDIVLMGRS---------------THINTF----- 98 (253)
T ss_dssp HHHHHHHTTSSCC----SEEEEEECS--CEEEECSCCCCSSCCBHHHHHHGGGG---------------GGSCTT-----
T ss_pred HHHHHHHhCCCCC----CCcEEEEec--cEEEEcCCCccCCCCCHHHHHHHhhh---------------hhcccc-----
Confidence 3444444444444 569998654 59999999754 34566554432100 000000
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHH
Q psy208 98 TELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIW 151 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~w 151 (443)
.......+.++.++|..+|+.+ ..++++.+||||||| .+..+
T Consensus 99 -----------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~ 166 (253)
T 2nq2_C 99 -----------AKPKSHDYQVAMQALDYLNLTH-LAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166 (253)
T ss_dssp -----------CCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHH
T ss_pred -----------cCCCHHHHHHHHHHHHHcCChH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 0000012357888999999975 468999999999999 56666
Q ss_pred HHHHhhhC----CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 152 LENYLQNW----PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 152 L~~~L~~~----~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.+.|+++ +.|||+||||.+++..+||+|+.|++|+ .+.|+.+++
T Consensus 167 l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN--FKFGETRNI 215 (253)
T ss_dssp HHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE--EEEEEHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe--EecCCHHHH
Confidence 66666432 7899999999999999999999999999 456776554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-12 Score=124.61 Aligned_cols=135 Identities=14% Similarity=0.146 Sum_probs=101.6
Q ss_pred chHHHHHHHccccccCCCCCcceEEecC--------CceEE-EEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy208 17 SSEFYCKALTLHLHLEGGMVSGQLRIPS--------HISVL-HVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAI 87 (443)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~G~i~~~~--------~~~i~-~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 87 (443)
|=++|++.+.|.+ |+. |+|.+.. .-+++ |++|++.. ..|+.+.+.... .+
T Consensus 42 GKSTLlk~l~Gl~-p~~----G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l-~~tv~enl~~~~---------------~~ 100 (263)
T 2pjz_A 42 GKTTLLRAISGLL-PYS----GNIFINGMEVRKIRNYIRYSTNLPEAYEI-GVTVNDIVYLYE---------------EL 100 (263)
T ss_dssp SHHHHHHHHTTSS-CCE----EEEEETTEEGGGCSCCTTEEECCGGGSCT-TSBHHHHHHHHH---------------HH
T ss_pred CHHHHHHHHhCCC-CCC----cEEEECCEECcchHHhhheEEEeCCCCcc-CCcHHHHHHHhh---------------hh
Confidence 3468888888888 765 8887643 12599 99999866 556554432100 00
Q ss_pred hCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------
Q psy208 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------- 146 (443)
. .....++.+++..+|+.....++++.+|||||||
T Consensus 101 --------------------~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 156 (263)
T 2pjz_A 101 --------------------K----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPF 156 (263)
T ss_dssp --------------------T----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTT
T ss_pred --------------------c----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCc
Confidence 0 0113568889999999823568999999999999
Q ss_pred -----HHHHHHHHHhhhCCCeEEEEecCHHHHhccCC-cEEEEeCCeeEEEcCChhH
Q psy208 147 -----MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPT-DIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 -----~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~-~i~~l~~g~i~~~~G~y~~ 197 (443)
.+..++.+.|+++..|||+||||.+++..+|| +|+.|++|++. +.|+.++
T Consensus 157 s~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp TTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEE-EEEEHHH
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEE-EecCHHH
Confidence 68889999998776699999999999999999 99999999986 4576544
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-13 Score=121.03 Aligned_cols=53 Identities=30% Similarity=0.396 Sum_probs=49.1
Q ss_pred hhccCCCCCHHHHHHHHHH------HHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 389 ALQFVGSLSGGQKSRVAFA------RMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 389 ~~~~~~~LSgGekqRl~lA------~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.++++.+||||||||++|| ++++.+|++|||||||++||+.++..+.+.|.++
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~ 109 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERY 109 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHT
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence 4678999999999999876 8999999999999999999999999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-15 Score=144.38 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=77.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccchhHHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMNLRCVQLLE 364 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~~~~~~~~~ 364 (443)
+|++++|+||||||||||+++|+|+++|++|+|.+... ..++|++|++. +++..++.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~--~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG--TDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT--CCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC--CCHHHHHHHHHH
Confidence 68999999999999999999999999999999977421 24788888752 344445555443
Q ss_pred HhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHH
Q psy208 365 AAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIE 429 (443)
Q Consensus 365 ~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~ 429 (443)
... .... ..+++..|... ..... ++...+||++|||+++.+|+ +|.|| |+++.+..
T Consensus 179 ~~~~~~~d----~~llDt~G~~~-~~~~~---~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~ 237 (304)
T 1rj9_A 179 AMKARGYD----LLFVDTAGRLH-TKHNL---MEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL 237 (304)
T ss_dssp HHHHHTCS----EEEECCCCCCT-TCHHH---HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH
T ss_pred HHHhCCCC----EEEecCCCCCC-chHHH---HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH
Confidence 210 0000 00122334321 11222 34455899999999999999 77788 77776543
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=125.67 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
+.++.++|+.+|+.+ ..++++.+||||||| .+..++.+.|++ .+.|||+|
T Consensus 137 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 215 (263)
T 2olj_A 137 EAKAMELLDKVGLKD-KAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215 (263)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 357888999999974 468999999999999 455566665533 37899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 216 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 246 (263)
T 2olj_A 216 THEMGFAREVGDRVLFMDGGYII-EEGKPEDL 246 (263)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred cCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999996 45777655
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-13 Score=138.23 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=72.4
Q ss_pred eeeEEEeCC-CCceeeeeeE-------EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEc-CceE------EE
Q psy208 280 SEVNFEYVP-GKPILTNVCL-------GATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVH-RNLK------FG 343 (443)
Q Consensus 280 ~~l~~~y~~-~~~il~~vsl-------~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~-~~~~------ig 343 (443)
..++++|.+ ..+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ +|.|... .... .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 345555422 2345556555 67888999999999999999999999999987 5655321 1100 00
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
+++|.. .+ ...++-.+ +||++|..+|++||+||||
T Consensus 172 ~v~q~~--------------------------------~~---------~~~~~~~~----~La~aL~~~PdvillDEp~ 206 (356)
T 3jvv_A 172 LVNQRE--------------------------------VH---------RDTLGFSE----ALRSALREDPDIILVGEMR 206 (356)
T ss_dssp EEEEEE--------------------------------BT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC
T ss_pred ceeeee--------------------------------ec---------cccCCHHH----HHHHHhhhCcCEEecCCCC
Confidence 111100 00 01122222 9999999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy208 424 NHLDIETIEALGKAI 438 (443)
Q Consensus 424 n~LD~~s~~~l~~~L 438 (443)
|.++.+.+.++.
T Consensus 207 ---d~e~~~~~~~~~ 218 (356)
T 3jvv_A 207 ---DLETIRLALTAA 218 (356)
T ss_dssp ---SHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHH
Confidence 888877766553
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=122.97 Aligned_cols=80 Identities=19% Similarity=0.153 Sum_probs=65.2
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiVS 167 (443)
.++.++|..+|+.+ ..++++.+||||||| .+...+.+.|+ +.+.|||+||
T Consensus 125 ~~~~~~l~~~gL~~-~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivt 203 (256)
T 1vpl_A 125 EMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSS 203 (256)
T ss_dssp HHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHCCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 46888899999975 468999999999999 45555555553 3478999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||.+++..+|++|+.|++|++. +.|+.++.
T Consensus 204 Hd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 233 (256)
T 1vpl_A 204 HNMLEVEFLCDRIALIHNGTIV-ETGTVEEL 233 (256)
T ss_dssp CCHHHHTTTCSEEEEEETTEEE-EEEEHHHH
T ss_pred CCHHHHHHHCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999999996 45776654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=123.76 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhh---hCCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQ---NWPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~---~~~~tviiV 166 (443)
+.++.++|..+|+.+...++++.+||||||| .+...+.+.|+ +.+.|||+|
T Consensus 130 ~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~v 209 (262)
T 1b0u_A 130 RERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVV 209 (262)
T ss_dssp HHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3578899999999853168999999999999 45555555553 337899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|||.+++..+||+|+.|++|++. ..|+.++.
T Consensus 210 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 240 (262)
T 1b0u_A 210 THEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 240 (262)
T ss_dssp CSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999996 45777655
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.38 E-value=8.9e-15 Score=133.10 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=79.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce---------EEEEeccCcccccccchhHHHHHHHhC--
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---------KFGYFSQHHVDQLDMNLRCVQLLEAAF-- 367 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---------~ig~~~Q~~~~~l~~~~~~~~~~~~~~-- 367 (443)
.+.+|++++|+||||||||||+++|+|. |+.|.|.+.... .++|++|... ...++.+++....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHHH
Confidence 4778999999999999999999999997 788988775321 1344544321 1223333332100
Q ss_pred ---CCCCHHHHHHHHhcCCCChhhh--hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 368 ---PGKPQEEYRRQLGGFGVSGDLA--LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 368 ---~~~~~~~~~~~L~~~gl~~~~~--~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+.. ..+..++..+++. ... +.++..+|+|++++++++|++..+|+++ +|+...+.+.+.+..+
T Consensus 79 ~~~~~~~-~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 79 YAKEGYF-VILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp HHHTSCE-EEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred HhccCCe-EEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 0000 0000001111111 111 3456789999999999999999999876 6888888888877653
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-13 Score=124.45 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=62.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-|++|++++|+||||||||||+++|+|...|..|..... ..+-|+..... +.. .. ...+...+ ....+ .+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~--~~~i~~~~~~~--~~~-~~-i~~~~~~~-~~~~~---~~ 90 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLN--GSVIWIDTENT--FRP-ER-IREIAQNR-GLDPD---EV 90 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCS--CEEEEEESSSC--CCH-HH-HHHHHHHT-TSCHH---HH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCC--CEEEEEECCCC--CCH-HH-HHHHHHHc-CCCHH---HH
Confidence 689999999999999999999999999665533321111 12333333211 110 01 11111111 11111 22
Q ss_pred HhcCCCChhhhhccCCCCCHHHHH-HHHHHHHhcc-------CCCeEEEeCCCCCCCHH
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKS-RVAFARMCMA-------APNFLVLDEPTNHLDIE 429 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekq-Rl~lA~al~~-------~p~lLiLDEPTn~LD~~ 429 (443)
++.+.+ ....+.++++ .+..+..++. +|++|+|||||+++|+.
T Consensus 91 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~ 141 (231)
T 4a74_A 91 LKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 141 (231)
T ss_dssp HHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred hhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence 222111 1234454433 3455554444 99999999999999984
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=123.27 Aligned_cols=142 Identities=15% Similarity=0.101 Sum_probs=92.9
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC---------------ceEEEEecccCCC-CchHHHHHHhccHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH---------------ISVLHVEQEVVGD-DTPAIDSVLECDTKRQNLLNREKT 82 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~---------------~~i~~l~Q~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 82 (443)
++|++.+.|.+.|++ |+|.+... -.|||++|++... ..|+.+.+....
T Consensus 45 STLl~~l~Gl~~p~~----G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~------------ 108 (235)
T 3tif_A 45 STMLNIIGCLDKPTE----GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL------------ 108 (235)
T ss_dssp HHHHHHHTTSSCCSE----EEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH------------
T ss_pred HHHHHHHhcCCCCCc----eEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHH------------
Confidence 566777777766654 99986431 1499999998653 446665543210
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------
Q psy208 83 ITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------- 146 (443)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------- 146 (443)
....... ....+...++.++|..+|+.+...++++++|||||||
T Consensus 109 ---~~~~~~~-----------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~lll 168 (235)
T 3tif_A 109 ---IFKYRGA-----------------MSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168 (235)
T ss_dssp ---HTCSSSC-----------------CCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ---HhhhccC-----------------CCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0000000 0001123578888999999864458999999999999
Q ss_pred ----------HHHHHHHHHhh----hCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----------MAIIWLENYLQ----NWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----------~~i~wL~~~L~----~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|+ +.+.|||+||||.+.. .+||+|+.|++|++.. .+...++
T Consensus 169 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~-~~~~~~~ 232 (235)
T 3tif_A 169 ADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER-EEKLRGF 232 (235)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETTEEEE-EEECC--
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE-EcChhhh
Confidence 34445555443 3478999999999965 7999999999999964 3444443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=120.28 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=59.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEEe
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVVS 167 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiVS 167 (443)
.++.++|+.+|+.+ ..++++.+||||||| .+...+.++|++ .+.|||+||
T Consensus 119 ~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vt 197 (224)
T 2pcj_A 119 ERGEYLLSELGLGD-KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT 197 (224)
T ss_dssp HHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 57888999999975 468999999999999 455555555532 378999999
Q ss_pred cCHHHHhccCCcEEEEeCCeeEE
Q psy208 168 HDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 168 HDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
||.+++ .+||+|+.|++|++..
T Consensus 198 Hd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 198 HERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp SCHHHH-TTSSEEEEEETTEEEE
T ss_pred CCHHHH-HhCCEEEEEECCEEEE
Confidence 999998 8999999999999863
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=122.97 Aligned_cols=138 Identities=15% Similarity=0.178 Sum_probs=96.8
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC---------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS---------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAI 87 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~---------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 87 (443)
=++|++.+.|.+.|++ |+|.+.+ .-++||++|++.. ...|+.+.+.-...
T Consensus 37 KSTLl~~l~Gl~~p~~----G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~---------------- 96 (240)
T 2onk_A 37 KSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR---------------- 96 (240)
T ss_dssp HHHHHHHHHTSSCCSE----EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT----------------
T ss_pred HHHHHHHHhCCCCCCc----eEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHH----------------
Confidence 3567777777776654 8887532 1258999999754 33466554432110
Q ss_pred hCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------
Q psy208 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------- 146 (443)
... . . ..+.++.++|+.+|+.+ ..++++.+|||||||
T Consensus 97 ----~~~--~---~------------~~~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPt 154 (240)
T 2onk_A 97 ----NVE--R---V------------ERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp ----TSC--H---H------------HHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred ----HcC--C---c------------hHHHHHHHHHHHcCCHH-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 000 0 0 00347888999999975 468999999999999
Q ss_pred -----HHHHHHHHHhhh----CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----MAIIWLENYLQN----WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----~~i~wL~~~L~~----~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+..++.+.|++ .+.|||+||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 155 s~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 214 (240)
T 2onk_A 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIV-EKGKLKEL 214 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 455566655533 3789999999999999999999999999996 45776654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.4e-12 Score=129.18 Aligned_cols=80 Identities=20% Similarity=0.169 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++.+||||||| ..+..|.+.+++.+.|+|+
T Consensus 116 ~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~ 194 (359)
T 3fvq_A 116 RQRIEAMLELTGISE-LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVF 194 (359)
T ss_dssp HHHHHHHHHHHTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 458899999999975 578999999999999 2223456666677899999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+.+..+||||++|++|++.. .|...+
T Consensus 195 vTHd~~ea~~~aDri~vl~~G~i~~-~g~~~e 225 (359)
T 3fvq_A 195 VSHDREEALQYADRIAVMKQGRILQ-TASPHE 225 (359)
T ss_dssp ECCCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHHCCEEEEEECCEEEE-EeCHHH
Confidence 9999999999999999999999974 577654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.4e-12 Score=122.55 Aligned_cols=139 Identities=13% Similarity=0.079 Sum_probs=94.9
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC--------ceEEEEeccc--CCCCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH--------ISVLHVEQEV--VGDDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~--------~~i~~l~Q~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
++|++.+.|.+.|+ +|+|.+... -.+||++|++ .....|+.+.+.-...
T Consensus 47 STLl~~i~Gl~~p~----~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~----------------- 105 (266)
T 2yz2_A 47 STLLQIVAGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVK----------------- 105 (266)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTT-----------------
T ss_pred HHHHHHHhCCCCCC----CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHH-----------------
Confidence 45666666665554 599987431 2499999985 2334455544321100
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH---------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------- 146 (443)
.. ....+.+.++..+|..+|+.. ...++++.+|||||||
T Consensus 106 -----------------~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 106 -----------------NF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp -----------------TT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred -----------------hc--CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 00 011233467889999999982 3468999999999999
Q ss_pred -----HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -----MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -----~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.|++ .+.|||+||||.+++..+||+|+.|++|++. +.|+..+.
T Consensus 167 s~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 225 (266)
T 2yz2_A 167 VGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKV-FDGTRMEF 225 (266)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEE-EEEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 455555555533 3789999999999999999999999999986 45766544
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-12 Score=128.86 Aligned_cols=138 Identities=17% Similarity=0.145 Sum_probs=93.6
Q ss_pred HHHHHHHccccccCCCCCcceEEecC---------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS---------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~---------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
++|.+.|.|...| ++|+|.+.. .-.|||++|++.. ...|+.+.+.-+. .+.
T Consensus 43 STLLr~iaGl~~p----~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~---------------~~~ 103 (381)
T 3rlf_A 43 STLLRMIAGLETI----TSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGL---------------KLA 103 (381)
T ss_dssp HHHHHHHHTSSCC----SEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHH---------------HHT
T ss_pred HHHHHHHHcCCCC----CCeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHH---------------HHc
Confidence 3444444444444 558987531 1359999999865 4456665543210 000
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
.....+.+.|+.++|+.+|+.+ ..++++++|||||||
T Consensus 104 --------------------~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 104 --------------------GAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp --------------------TCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred --------------------CCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 0111123468999999999985 578999999999999
Q ss_pred ----HHHH----HHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 ----MAII----WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 ----~~i~----wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
.... .|.++.++.+.|+|+||||.+++..+||+|++|++|++... |...+
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~-g~~~~ 220 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLE 220 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEE-ECHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-eCHHH
Confidence 2333 33333345689999999999999999999999999999754 66544
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-14 Score=144.18 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=91.1
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCceEEE--c---CceEEEEeccC
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAGTRTV--H---RNLKFGYFSQH 348 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~--~---~~~~ig~~~Q~ 348 (443)
.|++++ +++|+ +.+ |+++||+|.+|++ ++|+||||||||||+++|+|+.- .|.... . ....++|++|+
T Consensus 16 ~l~~~~-~~~y~-~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFD-SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEEC-Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeec
Confidence 467777 88895 456 9999999999999 99999999999999999999842 121110 0 01258888887
Q ss_pred cccccccchhHHHHHHHhCC-----------CCCHHHHHHHHhcC-CCCh---hhhhccC-----------CCCCHHHHH
Q psy208 349 HVDQLDMNLRCVQLLEAAFP-----------GKPQEEYRRQLGGF-GVSG---DLALQFV-----------GSLSGGQKS 402 (443)
Q Consensus 349 ~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~L~~~-gl~~---~~~~~~~-----------~~LSgGekq 402 (443)
+.. ....++.+.+..... ......+..+|... ++.. ...+.++ ..|+...
T Consensus 91 ~~l--~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-- 166 (427)
T 2qag_B 91 SNV--RLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-- 166 (427)
T ss_dssp --C--EEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--
T ss_pred Ccc--ccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--
Confidence 421 111111111100000 00012334445443 3321 0011111 2466555
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.++++|..+++++++|+||..|.+.....+.+.+.+
T Consensus 167 -ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 167 -LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp -HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 7899999999999999999999999888888777764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.9e-14 Score=140.25 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=76.9
Q ss_pred EEeeeEEE---eCC-CCcee---------eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce----
Q psy208 278 QLSEVNFE---YVP-GKPIL---------TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL---- 340 (443)
Q Consensus 278 ~~~~l~~~---y~~-~~~il---------~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~---- 340 (443)
++++++|+ |++ +.++| +++||.|.+|+.++|+||||||||||+++|+|+++|++|.|.+.+..
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 742 12455 99999999999999999999999999999999999999999886421
Q ss_pred -----EEEEec-cCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 -----KFGYFS-QHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 -----~ig~~~-Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
.++|++ |+.. ..++++...+-.|+.++...|
T Consensus 217 ~~~~~~v~~v~~q~~~-------------------------------------------~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK-------------------------------------------EEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCSSEEEEECC-----------------------------------------------------CCHHHHHHHHTTSCC
T ss_pred cccCCEEEEeecCccc-------------------------------------------cccccccCHHHHHHHHHhcCC
Confidence 122222 1100 011344457888899999999
Q ss_pred CeEEEeCCCC
Q psy208 415 NFLVLDEPTN 424 (443)
Q Consensus 415 ~lLiLDEPTn 424 (443)
+.+++|||+.
T Consensus 254 d~~l~~e~r~ 263 (361)
T 2gza_A 254 TRILLAELRG 263 (361)
T ss_dssp SEEEESCCCS
T ss_pred CEEEEcCchH
Confidence 9999999985
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.5e-12 Score=126.56 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=65.3
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.++.++|+.+|+.+ ..++++++||||||| .....+.++| ++.+.|+|+
T Consensus 123 ~~~v~~~l~~~gL~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 201 (355)
T 1z47_A 123 DARVRELLRFMRLES-YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVF 201 (355)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++.. .|+.++.
T Consensus 202 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l 233 (355)
T 1z47_A 202 VTHDQEEALEVADRVLVLHEGNVEQ-FGTPEEV 233 (355)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred ECCCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 9999999999999999999999974 4776543
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-12 Score=127.08 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 111 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (362)
T 2it1_A 111 DKKVREVAKMLHIDK-LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189 (362)
T ss_dssp HHHHHHHHHHTTCTT-CTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCCch-HhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 457899999999985 468999999999999 3333343333 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 190 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~ 220 (362)
T 2it1_A 190 VTHDQAEALAMADRIAVIREGEILQ-VGTPDE 220 (362)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred ECCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 9999999999999999999999975 466544
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-15 Score=149.32 Aligned_cols=159 Identities=13% Similarity=0.129 Sum_probs=104.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ce
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 340 (443)
+|+++++++.|+ ...+++++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.. ..
T Consensus 29 ~ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 467788888884 46799999999999999999999999999999999999999999987632 12
Q ss_pred EEEEeccCcccccccc----------hhHHHHH-------------------------HHh-------C-CCCCHH----
Q psy208 341 KFGYFSQHHVDQLDMN----------LRCVQLL-------------------------EAA-------F-PGKPQE---- 373 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~----------~~~~~~~-------------------------~~~-------~-~~~~~~---- 373 (443)
.++|++|++....... ....+.+ ... . +...+.
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 3567777643211100 0011110 000 0 000000
Q ss_pred --HHHHHHhcCCCChhhhhc-cCCCCCHHHHHHHHHHHHhcc------CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 374 --EYRRQLGGFGVSGDLALQ-FVGSLSGGQKSRVAFARMCMA------APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 374 --~~~~~L~~~gl~~~~~~~-~~~~LSgGekqRl~lA~al~~------~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+......+.++ ..+. +...+|+|+++++..|++++. .|+++. ||++|...++.|.+.|.++
T Consensus 188 ~~~i~~~~~ivvlN--K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVN--KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEE--CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEE--chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011111122221 1221 234689999999999999887 588775 9999999999999988653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.1e-12 Score=126.28 Aligned_cols=80 Identities=20% Similarity=0.188 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~~~tvii 165 (443)
+.++.++|+.+|+.+ ..++++++||||||| .-+.+|.++.++.+.|+|+
T Consensus 118 ~~~v~~~l~~~~L~~-~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 196 (353)
T 1oxx_K 118 RKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196 (353)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457899999999975 568999999999999 2333344433456889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 197 vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~ 227 (353)
T 1oxx_K 197 VSHDPADIFAIADRVGVLVKGKLVQ-VGKPED 227 (353)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-EcCHHH
Confidence 9999999999999999999999974 466544
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-15 Score=153.50 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=91.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-e--------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-L-------------- 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-~-------------- 340 (443)
+++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|.|.+... .
T Consensus 143 ~~~l~~Lg~~~~-~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 143 RLDLHSLGMTAH-NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCCGGGSCCCHH-HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCCHHHcCCCHH-HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 467778877773 35688888 53 899999999999999999999999999999999876321 0
Q ss_pred EEEEec---------cCcccccccc----hhHHHHHHHhC---------CCCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 341 KFGYFS---------QHHVDQLDMN----LRCVQLLEAAF---------PGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 341 ~ig~~~---------Q~~~~~l~~~----~~~~~~~~~~~---------~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
.+++.+ |++...+... .++.+.+.... .......+...|..+|+... ..+..|||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSg 296 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLG 296 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHH
Confidence 122322 5543211111 34444443211 11122344456777888642 36789999
Q ss_pred HHHHHHHHHHHhccCCCeEE
Q psy208 399 GQKSRVAFARMCMAAPNFLV 418 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLi 418 (443)
||+|| ||++++.+|+++.
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 8999999999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=126.18 Aligned_cols=81 Identities=20% Similarity=0.271 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 117 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 195 (372)
T 1g29_1 117 DQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY 195 (372)
T ss_dssp HHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHCCCch-HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 457889999999975 468999999999999 3333333333 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++.. .|+..+.
T Consensus 196 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~l 227 (372)
T 1g29_1 196 VTHDQVEAMTMGDRIAVMNRGVLQQ-VGSPDEV 227 (372)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred ECCCHHHHHHhCCEEEEEeCCEEEE-eCCHHHH
Confidence 9999999999999999999999974 4776543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-12 Score=127.04 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
+.|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 111 ~~~v~~~l~~~~L~~-~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 189 (359)
T 2yyz_A 111 EKRVVEIARKLLIDN-LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVY 189 (359)
T ss_dssp THHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 357899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 190 vTHd~~~~~~~adri~vl~~G~i~~-~g~~~~ 220 (359)
T 2yyz_A 190 VTHDQAEAMTMASRIAVFNQGKLVQ-YGTPDE 220 (359)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EcCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999999999999974 476554
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.6e-12 Score=127.28 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=64.7
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tvii 165 (443)
..|+.++|+.+|+.+ ..++++++||||||| .....+.+.| ++.+.|+|+
T Consensus 119 ~~~v~~~l~~~~L~~-~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~ 197 (372)
T 1v43_A 119 DKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197 (372)
T ss_dssp HHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 357899999999975 568999999999999 3444444444 445889999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
||||.+++..+||+|+.|++|++.. .|+..+
T Consensus 198 vTHd~~~a~~~adri~vl~~G~i~~-~g~~~~ 228 (372)
T 1v43_A 198 VTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTE 228 (372)
T ss_dssp EESCHHHHHHHCSEEEEEETTEEEE-EECHHH
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEE-eCCHHH
Confidence 9999999999999999999999974 466554
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-12 Score=130.75 Aligned_cols=120 Identities=20% Similarity=0.221 Sum_probs=74.2
Q ss_pred ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC--CCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhC
Q psy208 291 PILTNV-CLGATLESRICIVGDNGAGKTTLLKIIMGII--SPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 291 ~il~~v-sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~--~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
+.|+.+ ++.|++|++++|+||||||||||++.|++.. +|++|.. ...+-|+.-+.. +.. .. +..+...+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~----~G~vi~i~~e~~--~~~-~~-i~~i~q~~ 189 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGL----NGSVIWIDTENT--FRP-ER-IREIAQNR 189 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSC----SCEEEEEESSSC--CCH-HH-HHHHHHTT
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCC----CCeEEEEeCCCC--CCH-HH-HHHHHHHc
Confidence 345554 6889999999999999999999999999998 6776310 011223332211 110 01 11111111
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc-------cCCCeEEEeCCCCCCCHH
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM-------AAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~-------~~p~lLiLDEPTn~LD~~ 429 (443)
..... .++..+-+. . ..-|.++++++.+++.++ .+|++||+||||+++|+.
T Consensus 190 -~~~~~---~v~~ni~~~-----~--~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 190 -GLDPD---EVLKHIYVA-----R--AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp -TCCHH---HHGGGEEEE-----E--CCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred -CCCHH---HHhhCEEEE-----e--cCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence 11111 222221110 0 012678999999999988 689999999999999986
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.8e-14 Score=128.69 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=51.6
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
..+++++.|+ ++.+++++||+|.+|++++|+||||||||||+|+|+|++ |++|+|.+.+
T Consensus 9 ~~~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g 67 (158)
T 1htw_A 9 PDEFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT 67 (158)
T ss_dssp CSHHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred CCHHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence 3456677784 467999999999999999999999999999999999999 9999987643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=123.74 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiV 166 (443)
.++.++|+.+|+.+ ..++++++||||||| .....+.++| ++.+.|+|+|
T Consensus 106 ~~v~~~l~~~~L~~-~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~v 184 (348)
T 3d31_A 106 KRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184 (348)
T ss_dssp HHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCCch-HhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 57899999999985 468999999999999 3333343333 4568899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
|||.+++..+||+|+.|++|++.. .|+..+
T Consensus 185 THd~~~~~~~adri~vl~~G~i~~-~g~~~~ 214 (348)
T 3d31_A 185 THDQTEARIMADRIAVVMDGKLIQ-VGKPEE 214 (348)
T ss_dssp ESCHHHHHHHCSEEEEESSSCEEE-EECHHH
T ss_pred eCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 999999999999999999999975 466554
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.7e-12 Score=121.68 Aligned_cols=80 Identities=20% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
..++.++|..+|+.+ ..++++.+||||||| .+...+.+.|++ .+.|||+|
T Consensus 131 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 209 (257)
T 1g6h_A 131 VEKAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLII 209 (257)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCch-hhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 457889999999974 468999999999999 455555555533 37899999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
|||.+++..+||+|+.|++|++. +.|+.++
T Consensus 210 tHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 210 EHRLDIVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp CSCCSTTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 99999999999999999999986 4566655
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.6e-13 Score=134.90 Aligned_cols=97 Identities=22% Similarity=0.298 Sum_probs=69.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCC-CceEEEcC-ce------EEEEeccCcccccccchhHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPT-AGTRTVHR-NL------KFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~-~G~i~~~~-~~------~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
++|++++ +.+|+.++|+||||||||||+++|+|+++|+ +|.|.... .. .++|++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3677665 7899999999999999999999999999998 89885421 11 01111110
Q ss_pred HHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHH
Q psy208 363 LEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKA 437 (443)
Q Consensus 363 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~ 437 (443)
.+|+. +..+ +.+|+.+|..+|++||+|||| |.++...+.++
T Consensus 190 ------------------~~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~ 230 (372)
T 2ewv_A 190 ------------------EVGED-------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA 230 (372)
T ss_dssp ------------------EBTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred ------------------ecCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHH
Confidence 12221 2344 469999999999999999999 88776654444
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-12 Score=129.58 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=77.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCceEEEc--------CceEEEEeccCcccccccchhHHHH
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS-PTAGTRTVH--------RNLKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-p~~G~i~~~--------~~~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
-++++++. .+|++++|+||||||||||+|+|+|... |++|+|... ....+++++|+.. +..+.++.++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~--l~dtpgv~e~ 281 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD--VIDSPGVREF 281 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE--EEECHHHHTC
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE--ecCcccHHHh
Confidence 35566654 4799999999999999999999999999 999998753 1346899998752 3333343331
Q ss_pred HHHhCCCCCHHH----HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc
Q psy208 363 LEAAFPGKPQEE----YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM 411 (443)
Q Consensus 363 ~~~~~~~~~~~~----~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~ 411 (443)
........+ +.+++..+++. ...+.++..|| ||+||++||++++
T Consensus 282 ---~l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 282 ---GLWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp ---CCCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred ---hhcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHHhcCC
Confidence 111223333 34566777775 46788999999 9999999999864
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.8e-12 Score=122.03 Aligned_cols=80 Identities=20% Similarity=0.175 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC---CCeE--EE
Q psy208 117 ARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW---PTTL--LV 165 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tv--ii 165 (443)
.++.++|..+|+.+ ..++++.+||||||| .+..++.++|+++ +.|| |+
T Consensus 140 ~~~~~~l~~~gl~~-~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~ii 218 (279)
T 2ihy_A 140 NEAHQLLKLVGMSA-KAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIY 218 (279)
T ss_dssp HHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 47888999999974 468999999999999 5666666666433 6799 99
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+||+|+.|++|++. +.|+.+++
T Consensus 219 vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 219 VTHFIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp EESCGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999999986 45776654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.5e-11 Score=115.46 Aligned_cols=82 Identities=17% Similarity=0.178 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------------HHHHHHHHHhh----h
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------------MAIIWLENYLQ----N 158 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~----~ 158 (443)
...++.++|+.+|+.+ ..++++.+||||||| .+...+.+.|+ +
T Consensus 118 ~~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 118 DRQALQQVMAQTDCLA-LAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp HHHHHHHHHHHTTCST-TTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChh-HhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc
Confidence 4567889999999975 468999999999999 22233444443 2
Q ss_pred CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 159 WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 159 ~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+.|||+||||.+++..+||+|++|++|++. +.|..++.
T Consensus 197 ~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~-~~g~~~~~ 235 (266)
T 4g1u_C 197 EPLAVCCVLHDLNLAALYADRIMLLAQGKLV-ACGTPEEV 235 (266)
T ss_dssp SSEEEEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred CCCEEEEEEcCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 3459999999999999999999999999997 45776554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.2e-11 Score=114.32 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=68.6
Q ss_pred ceeeeeeE-EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 291 PILTNVCL-GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 291 ~il~~vsl-~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
+.|+.+.. .|.+|++++|+||||||||||++.|++ +..+ .+.|+..+. .+.. ...
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~--------~v~~i~~~~--~~~~-~~~---------- 62 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGK--------KVAYVDTEG--GFSP-ERL---------- 62 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCS--------EEEEEESSC--CCCH-HHH----------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCC--------cEEEEECCC--CCCH-HHH----------
Confidence 45566554 689999999999999999999999999 2222 234454332 1111 111
Q ss_pred CCHHHHHHHHhcCCCChhh--hhccCCCCCHHH--HHHHHHHHHhccC-CCeEEEeCCCCCCCHH
Q psy208 370 KPQEEYRRQLGGFGVSGDL--ALQFVGSLSGGQ--KSRVAFARMCMAA-PNFLVLDEPTNHLDIE 429 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~~--~~~~~~~LSgGe--kqRl~lA~al~~~-p~lLiLDEPTn~LD~~ 429 (443)
...+..+++..+. .+..+..+|+++ ++++..+++++.+ |+++|+||||+.+|..
T Consensus 63 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~ 121 (220)
T 2cvh_A 63 ------VQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE 121 (220)
T ss_dssp ------HHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred ------HHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence 1112222221110 011334566664 5678888889876 9999999999999974
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-14 Score=143.65 Aligned_cols=139 Identities=11% Similarity=0.093 Sum_probs=81.0
Q ss_pred eeeeeeEEEeC--CCEEEEECCCCCcHHHHHHHHHcCCCCCC----ceEEEcCceEEEEeccCcccccccchhHHHHHHH
Q psy208 292 ILTNVCLGATL--ESRICIVGDNGAGKTTLLKIIMGIISPTA----GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEA 365 (443)
Q Consensus 292 il~~vsl~i~~--Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~----G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~ 365 (443)
+...|+++|.+ |++++|+||||||||||+++|+|+++|++ |++.+.... ..... .+... .. ..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~-----~~~~~-~~~~~-~~-~~I~~ 228 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKL-----GGDEQ-AMQYS-DY-PQMAL 228 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSS-----SSCTT-SSCTT-TH-HHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhc-----CCCcc-cCChh-HH-HHHHH
Confidence 45679999999 99999999999999999999999999998 766442100 00000 00000 00 11110
Q ss_pred hCCCCCHHHHHHHHhcCCC-ChhhhhccCCCCCHHHHHHHHHHHHhc-cCCCeEEEeC---CC------CCCCHHHHHHH
Q psy208 366 AFPGKPQEEYRRQLGGFGV-SGDLALQFVGSLSGGQKSRVAFARMCM-AAPNFLVLDE---PT------NHLDIETIEAL 434 (443)
Q Consensus 366 ~~~~~~~~~~~~~L~~~gl-~~~~~~~~~~~LSgGekqRl~lA~al~-~~p~lLiLDE---PT------n~LD~~s~~~l 434 (443)
.... ...........+-+ ..+..+..+..+|+|++++..+++++. .+|+++|||| |+ .++|...+..+
T Consensus 229 ~~q~-~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l 307 (365)
T 1lw7_A 229 GHQR-YIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQF 307 (365)
T ss_dssp HHHH-HHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHH
T ss_pred HHHH-HHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHH
Confidence 0000 00000011111111 112223344567778788888888774 6999999999 65 58999999999
Q ss_pred HHHHc
Q psy208 435 GKAIN 439 (443)
Q Consensus 435 ~~~L~ 439 (443)
.++|.
T Consensus 308 ~~~l~ 312 (365)
T 1lw7_A 308 QQLLK 312 (365)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88884
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-11 Score=115.95 Aligned_cols=82 Identities=22% Similarity=0.342 Sum_probs=67.1
Q ss_pred HHHHHHHHHhCCCChhhhhccCC-CCChHHHH--------------------------HHHHHHHHHhhhC---CCeEEE
Q psy208 116 PARASVILAGLGFTPEMQKRATK-HFSGGWRK--------------------------MAIIWLENYLQNW---PTTLLV 165 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~-~LSGGqr~--------------------------~~i~wL~~~L~~~---~~tvii 165 (443)
..++.++|+.+|+.....++++. +||||||| .+..++.+.|+++ +.|||+
T Consensus 140 ~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 140 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred HHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 35788899999997444678887 59999999 6777888888654 579999
Q ss_pred EecCHHHHhcc-CCcEEEEeCCeeEEEcCChhHH
Q psy208 166 VSHDRHFLDSV-PTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 166 VSHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~~y 198 (443)
||||.+++..+ ||+|+.|++|++. +.|+.+..
T Consensus 220 vtHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 220 VTHYQRILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp ECSSGGGGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred EeeCHHHHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999886 9999999999996 45766543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.22 E-value=8.2e-11 Score=112.51 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------------------HHHHHHHHHhhh---C
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------------------MAIIWLENYLQN---W 159 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------------------~~i~wL~~~L~~---~ 159 (443)
+.++.+++..+|+.+ ..++++.+||||||| .+..++.+.|++ .
T Consensus 104 ~~~~~~~l~~~~l~~-~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 182 (249)
T 2qi9_C 104 TELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ 182 (249)
T ss_dssp HHHHHHHHHHTTCGG-GTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC
Confidence 457888999999975 468999999999999 455566666643 3
Q ss_pred CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 160 PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 160 ~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.|||+||||.+++..+||+|+.|++|++. +.|+.++.
T Consensus 183 g~tviivtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 183 GLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp TCEEEEECSCHHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 679999999999999999999999999986 45776554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=9.5e-11 Score=113.46 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=60.7
Q ss_pred HHHHHHhC--CCChhhhhccCCCCChHHHH--------------------------HHHHHHHHHhhhC----CCeEEEE
Q psy208 119 ASVILAGL--GFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENYLQNW----PTTLLVV 166 (443)
Q Consensus 119 v~~~L~~l--gl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~----~~tviiV 166 (443)
+..++..+ |+.. ..++++.+||||||| .+...+.+.|+++ +.|||+|
T Consensus 135 ~~~~l~~l~~gl~~-~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviiv 213 (271)
T 2ixe_A 135 AHDFISGFPQGYDT-EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLI 213 (271)
T ss_dssp CHHHHHHSTTGGGS-BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEE
T ss_pred HHHHHHhhhcchhh-hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence 45566666 6653 357889999999999 5666777777543 5799999
Q ss_pred ecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 167 SHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 167 SHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
|||.+++.. ||+|+.|++|++. ..|+.++..
T Consensus 214 tHd~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~ 244 (271)
T 2ixe_A 214 TQQLSLAER-AHHILFLKEGSVC-EQGTHLQLM 244 (271)
T ss_dssp CSCHHHHTT-CSEEEEEETTEEE-EEECHHHHH
T ss_pred eCCHHHHHh-CCEEEEEECCEEE-EECCHHHHH
Confidence 999999875 9999999999986 457766553
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-11 Score=116.44 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=60.6
Q ss_pred HHHHHHHHhCCCChhhhhccCCC-CChHHHH--------------------------HHHHHHHHHhhh---CCCeEEEE
Q psy208 117 ARASVILAGLGFTPEMQKRATKH-FSGGWRK--------------------------MAIIWLENYLQN---WPTTLLVV 166 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~-LSGGqr~--------------------------~~i~wL~~~L~~---~~~tviiV 166 (443)
.++.++|..+|++....++++.+ ||||||| .+...+.+.|++ .+.|||+|
T Consensus 120 ~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~v 199 (250)
T 2d2e_A 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVI 199 (250)
T ss_dssp HHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEE
T ss_pred HHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46888899999964456899999 9999999 566666666644 36799999
Q ss_pred ecCHHHHhcc-CCcEEEEeCCeeEEEcCChh
Q psy208 167 SHDRHFLDSV-PTDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 167 SHDr~fLd~v-~~~i~~l~~g~i~~~~G~y~ 196 (443)
|||.+++..+ ||+|+.|++|++. +.|+.+
T Consensus 200 tHd~~~~~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 200 THYQRILNYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp CSSSGGGGTSCCSEEEEEETTEEE-EEESHH
T ss_pred ecCHHHHHHhcCCEEEEEECCEEE-EEeCHH
Confidence 9999999998 5999999999996 457655
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=138.05 Aligned_cols=68 Identities=28% Similarity=0.266 Sum_probs=60.8
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCC--eEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN--FLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~--lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
....|..+|+.....++++.+|||||+|||+||++|+.+|+ +|||||||+|||+...+.|.+.|+++.
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~ 513 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLR 513 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHH
Confidence 44678889987555789999999999999999999999887 999999999999999999999998764
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.6e-14 Score=126.57 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=72.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC---CceEEEcCce---------------EEE----EeccCcccccccchhHHH
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPT---AGTRTVHRNL---------------KFG----YFSQHHVDQLDMNLRCVQ 361 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~---~G~i~~~~~~---------------~ig----~~~Q~~~~~l~~~~~~~~ 361 (443)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.. .+| +++|++...+. .
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~-~----- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIR-R----- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEE-E-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEe-c-----
Confidence 579999999999999999999999998 8988764311 133 55554321110 0
Q ss_pred HHHHhCCCCCHH--HHHHHHhc-C-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeE-------EEeCCC---CCCC
Q psy208 362 LLEAAFPGKPQE--EYRRQLGG-F-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFL-------VLDEPT---NHLD 427 (443)
Q Consensus 362 ~~~~~~~~~~~~--~~~~~L~~-~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lL-------iLDEPT---n~LD 427 (443)
...+. .+.+++.. + |+.. .-...|||||+||++|||+++.+|++. +=|.|. -.+|
T Consensus 77 -------~~~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~~~f~ 145 (171)
T 2f1r_A 77 -------VSEEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFR 145 (171)
T ss_dssp -------CCHHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSSCEEC
T ss_pred -------CChhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccCcccC
Confidence 00011 23334443 3 3321 112249999999999999999998773 235553 2344
Q ss_pred HHHHHHHHHHHc
Q psy208 428 IETIEALGKAIN 439 (443)
Q Consensus 428 ~~s~~~l~~~L~ 439 (443)
....+.+.+.|.
T Consensus 146 ~~~~~~~a~~i~ 157 (171)
T 2f1r_A 146 RDEVERIAEFIL 157 (171)
T ss_dssp TTCHHHHHHHHH
T ss_pred cccHHHHHHHHH
Confidence 555566666653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=111.75 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=47.1
Q ss_pred hccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++..||||||||++||++++ .+|+++||||||++||+.++..+.+.|.++
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~ 114 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES 114 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence 4667899999999999999997 457999999999999999999999998765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-12 Score=134.30 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=77.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchh--HHHHHHHhCCCC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLR--CVQLLEAAFPGK 370 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~--~~~~~~~~~~~~ 370 (443)
-++++|+++.|++++|+|+|||||||||++|+|..+...+.-.......+|++.++....+....+ ..+. .......
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~-a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG-ASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCC-GGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccc-hhhhhhh
Confidence 478999999999999999999999999999999842111100000112234443321000000000 0000 0000001
Q ss_pred CHHHH------HHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHH
Q psy208 371 PQEEY------RRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIE 432 (443)
Q Consensus 371 ~~~~~------~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~ 432 (443)
..... ..++..+++. +.++.+||+|+++++.+|++|+..|.+|+| |.+|+...+
T Consensus 226 ~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~ 285 (416)
T 1udx_A 226 GLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEE 285 (416)
T ss_dssp CHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHH
T ss_pred hHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHH
Confidence 11111 1122233332 456778999999999999999999999999 999987653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.18 E-value=1e-12 Score=128.57 Aligned_cols=121 Identities=15% Similarity=0.096 Sum_probs=77.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHh-----------CCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAA-----------FPG 369 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~-----------~~~ 369 (443)
.++.+++|+|++|||||||.++|.+++.+. |. ....+.+++|+.. .+ ..+...++... .+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f-~~--~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDF-YL--THEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGG-BC--CHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEeccccc-cC--ChHHHHHHhccccccchhhhccCcc
Confidence 356789999999999999999999998763 20 0112344478753 22 23334443221 122
Q ss_pred -CCHHHHHHHHhcCCCCh-------hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 370 -KPQEEYRRQLGGFGVSG-------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 370 -~~~~~~~~~L~~~gl~~-------~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
.....+.+.+..+.-.. -....+...+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 23345556666553220 1122345789999999999873333399999999999999985
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-10 Score=108.80 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=86.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 98 (443)
++|++.+.|.+.|+ +|+|.+.+ +++|++|++.....|+.+.+.-... ...+
T Consensus 45 STLl~~l~Gl~~p~----~G~I~~~g--~i~~v~Q~~~~~~~tv~enl~~~~~--------------------~~~~--- 95 (237)
T 2cbz_A 45 SSLLSALLAEMDKV----EGHVAIKG--SVAYVPQQAWIQNDSLRENILFGCQ--------------------LEEP--- 95 (237)
T ss_dssp HHHHHHHTTCSEEE----EEEEEECS--CEEEECSSCCCCSEEHHHHHHTTSC--------------------CCTT---
T ss_pred HHHHHHHhcCCCCC----CceEEECC--EEEEEcCCCcCCCcCHHHHhhCccc--------------------cCHH---
Confidence 45666666666655 49999876 6999999976555566655532110 0000
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh----hhhhccCCCCChHHHH--------------------------HH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTP----EMQKRATKHFSGGWRK--------------------------MA 148 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~----~~~~~~~~~LSGGqr~--------------------------~~ 148 (443)
...++.+ +..++..+++.+ ...++++.+||||||| .+
T Consensus 96 ~~~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 96 YYRSVIQ-------------ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHHHH-------------HTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHHHHH-------------HHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 0000100 000111222211 1246789999999999 56
Q ss_pred HHHHHHHhh---h--CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 149 IIWLENYLQ---N--WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 149 i~wL~~~L~---~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
...+.+.|. . .+.|||+||||.+++. .||+|+.|++|++. ..|+++...
T Consensus 163 ~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~~ 216 (237)
T 2cbz_A 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKIS-EMGSYQELL 216 (237)
T ss_dssp HHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEE-EeCCHHHHh
Confidence 677777773 2 3679999999999986 69999999999996 457776653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.5e-10 Score=108.98 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=50.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++++.+||||||| .+...+.+.|++ .+.|||+||||.+++.. ||+|+.|+
T Consensus 139 ~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l~ 217 (247)
T 2ff7_A 139 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVME 217 (247)
T ss_dssp CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEEE
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEE
Confidence 45678999999999 455566666643 37899999999999865 99999999
Q ss_pred CCeeEEEcCChhHH
Q psy208 185 SQRIDTYRGNYEAF 198 (443)
Q Consensus 185 ~g~i~~~~G~y~~y 198 (443)
+|++. +.|+.++.
T Consensus 218 ~G~i~-~~g~~~~l 230 (247)
T 2ff7_A 218 KGKIV-EQGKHKEL 230 (247)
T ss_dssp TTEEE-EEECHHHH
T ss_pred CCEEE-EECCHHHH
Confidence 99996 45776654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.6e-10 Score=105.32 Aligned_cols=139 Identities=12% Similarity=0.073 Sum_probs=86.7
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 98 (443)
++|++.+.|.+.|+. |+|.+.+ +|+|++|++.....|+.+.+.-+... .. .
T Consensus 48 STLl~~l~Gl~~p~~----G~i~~~g--~i~~v~q~~~~~~~tv~enl~~~~~~--------------------~~---~ 98 (229)
T 2pze_A 48 TSLLMMIMGELEPSE----GKIKHSG--RISFCSQFSWIMPGTIKENIIFGVSY--------------------DE---Y 98 (229)
T ss_dssp HHHHHHHTTSSCCSE----EEEEECS--CEEEECSSCCCCSBCHHHHHHTTSCC--------------------CH---H
T ss_pred HHHHHHHhCCCcCCc----cEEEECC--EEEEEecCCcccCCCHHHHhhccCCc--------------------Ch---H
Confidence 467777777766654 9999876 69999999865445666555432100 00 0
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHHH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAIIW 151 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~w 151 (443)
++.+..+. . .+...+..+.... ...++++.+||||||| .+...
T Consensus 99 ~~~~~~~~---~-------~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~ 168 (229)
T 2pze_A 99 RYRSVIKA---C-------QLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168 (229)
T ss_dssp HHHHHHHH---T-------TCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHH---h-------CcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHH
Confidence 00000000 0 1112233332211 1234567999999999 56777
Q ss_pred HHHHh-hhC--CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 152 LENYL-QNW--PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 152 L~~~L-~~~--~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.+.+ +.. +.|||+||||.+++. .||+|+.|++|++. +.|++++.
T Consensus 169 i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~-~~g~~~~~ 216 (229)
T 2pze_A 169 IFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSEL 216 (229)
T ss_dssp HHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEE-EEECHHHH
T ss_pred HHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEE-EECCHHHH
Confidence 77763 332 679999999999986 49999999999996 45777654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.5e-13 Score=133.90 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=54.3
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCce
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGA-------------------TLESRICIVGDNGAGKTTLLKIIMGIIS--PTAGT 333 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i-------------------~~Ge~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~ 333 (443)
.+|+++||++.|. +++++++|.+ .+|+++||+|+||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 3589999999993 6999999988 8999999999999999999999999988 99999
Q ss_pred EEE
Q psy208 334 RTV 336 (443)
Q Consensus 334 i~~ 336 (443)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-13 Score=127.89 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=67.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH---H-hCC-CCCHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE---A-AFP-GKPQEE 374 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~---~-~~~-~~~~~~ 374 (443)
..+|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+. .+....+. . ..+ ......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGF-HLD--NRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGG-BCC--HHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCC-cCC--HHHHHHhcccccCCCCchhhHHH
Confidence 4689999999999999999999999999875 4 13555665432 111 11111100 0 000 011222
Q ss_pred HHHHHhcCC----CChhhhhccCCCCCHHHHHHHHHH-HHhccCCCeEEEeCCC
Q psy208 375 YRRQLGGFG----VSGDLALQFVGSLSGGQKSRVAFA-RMCMAAPNFLVLDEPT 423 (443)
Q Consensus 375 ~~~~L~~~g----l~~~~~~~~~~~LSgGekqRl~lA-~al~~~p~lLiLDEPT 423 (443)
+...+..+. +.... ......+|+||+||++++ ++++.++.++++|||.
T Consensus 88 ~~~~l~~l~~~~~i~~p~-~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPL-FDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp HHHHHHHHHHCSCEEEEE-EETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred HHHHHHHHhcCCceeccc-CCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 223332211 10001 112335799999999998 8899999999999985
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-12 Score=121.16 Aligned_cols=110 Identities=15% Similarity=0.184 Sum_probs=63.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceEEEcCc-------eEEEEeccCcccccccchhHHHHHHHhC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTRTVHRN-------LKFGYFSQHHVDQLDMNLRCVQLLEAAF 367 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-------~~ig~~~Q~~~~~l~~~~~~~~~~~~~~ 367 (443)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+... ..++|++|++.. +..+...
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~--------f~~~~~~- 80 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDE--------FKEMISR- 80 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHH--------HHHHHHT-
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHH--------HHHHHhc-
Confidence 456789999999999999999999999999986 5777655321 125566654310 1111000
Q ss_pred CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHc
Q psy208 368 PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 368 ~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~ 439 (443)
.. +++...+ .+.+.|-.+++ +..++..++++||| ||+.+...+.+.+.
T Consensus 81 ~~--------f~E~~~~--------~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~ 128 (219)
T 1s96_A 81 DA--------FLEHAEV--------FGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP 128 (219)
T ss_dssp TC--------EEEEEEE--------TTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT
T ss_pred CH--------HHHHHHH--------HhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc
Confidence 00 0000000 01111111222 34455668999999 99999999998764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-12 Score=124.86 Aligned_cols=107 Identities=10% Similarity=0.102 Sum_probs=74.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc----------e-EEEEeccCcccc-cc--cchhHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN----------L-KFGYFSQHHVDQ-LD--MNLRCVQL 362 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~----------~-~ig~~~Q~~~~~-l~--~~~~~~~~ 362 (443)
+..|++++|+||||||||||+|+|+ +++|++|+|.. .+. . .+||++|.|... +. ...++ +.
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3468999999999999999999999 99999999886 221 1 368999986321 11 12222 21
Q ss_pred HH----------HhCC-----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 363 LE----------AAFP-----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 363 ~~----------~~~~-----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
+. ..+. ......+.++++.+++.....++++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10 1121 1223468899999999865778899999998888898886
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-11 Score=111.24 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=62.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHH
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR 376 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (443)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|.. +.|+.-. .....+ .
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-------~~~~~~~---------~~~~~~------------~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-------GYFFDTK---------DLIFRL------------K 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-------CCEEEHH---------HHHHHH------------H
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-------EEEEEHH---------HHHHHH------------H
Confidence 46677899999999999999999999999987777631 1111100 001111 1
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHHHHHHHHcc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIEALGKAINK 440 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~~l~~~L~~ 440 (443)
....... .. -+...+.+|++||||||++ ++|+..++.+.+.|..
T Consensus 84 ~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~ 128 (180)
T 3ec2_A 84 HLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY 128 (180)
T ss_dssp HHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHH
Confidence 1111000 00 0112234899999999985 9999999998887754
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.11 E-value=3.6e-11 Score=133.27 Aligned_cols=65 Identities=25% Similarity=0.277 Sum_probs=58.1
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
..|..+|+..-..++++.+|||||+|||+||++|..+| .+|||||||++||+...+.|.+.|+++
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L 552 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM 552 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence 34788898644578999999999999999999999985 999999999999999999999998765
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-11 Score=131.24 Aligned_cols=64 Identities=27% Similarity=0.211 Sum_probs=57.8
Q ss_pred HHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 378 QLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 378 ~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.|..+|+..-..++++.+|||||+|||+||++|..+| .+|||||||+|||+..++.|.+.|+.+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L 427 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL 427 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence 5778999644478999999999999999999999999 499999999999999999999988754
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-12 Score=132.31 Aligned_cols=126 Identities=16% Similarity=0.099 Sum_probs=78.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------------ceEEEEeccCccccccc
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------------NLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------------~~~ig~~~Q~~~~~l~~ 355 (443)
-+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.. ...++|++|+.. ++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~--~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT--CCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC--cCH
Confidence 4688999999999999999999999999999999999999998741 123788888642 344
Q ss_pred chhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc-cCCC-eEEEeCCCCCCCHH
Q psy208 356 NLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM-AAPN-FLVLDEPTNHLDIE 429 (443)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~-~~p~-lLiLDEPTn~LD~~ 429 (443)
..++.+++.... .+.+ .-++...|..... ...+..| ++++.+++++. ..|+ +||...||.+.|..
T Consensus 361 ~~tV~e~l~~a~~~~~D----vVLIDTaGrl~~~-~~lm~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al 428 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNID----VLIADTAGRLQNK-SHLMEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV 428 (503)
T ss_dssp HHHHHHHHHHHHHTTCS----EEEECCCCSCCCH-HHHHHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH
T ss_pred HHHHHHHHHHHHhcCCC----EEEEeCCCccchh-hhHHHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH
Confidence 445555443210 0000 0011222321110 1111223 46778888664 4463 55455588886654
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=106.49 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=51.1
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++...+||||||| .+...+.+.|++ .+.|+|+||||...+.. ||+|++|+
T Consensus 184 ~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~ 262 (306)
T 3nh6_A 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIK 262 (306)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEE
T ss_pred hcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEE
Confidence 45678899999999 333444444432 36899999999999987 99999999
Q ss_pred CCeeEEEcCChhHHHH
Q psy208 185 SQRIDTYRGNYEAFDK 200 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~ 200 (443)
+|++.. .|++++...
T Consensus 263 ~G~iv~-~G~~~el~~ 277 (306)
T 3nh6_A 263 DGCIVE-RGRHEALLS 277 (306)
T ss_dssp TTEEEE-EECHHHHHH
T ss_pred CCEEEE-ECCHHHHHh
Confidence 999974 588876643
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-11 Score=118.25 Aligned_cols=98 Identities=16% Similarity=0.212 Sum_probs=71.1
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHH
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEY 375 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 375 (443)
+++...+|++++|+|+|||||||+++.|++.+.+..|+|.+ +..+.. . .... +++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l--------v~~D~~---r--~~a~------------eqL 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL--------AAADTF---R--AAAI------------EQL 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE--------EEECTT---C--HHHH------------HHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE--------Eccccc---c--HHHH------------HHH
Confidence 45566789999999999999999999999999988777644 222221 0 0111 122
Q ss_pred HHHHhcCCCChhhhhccCCCCCHHHHHHH---HHHHHhccCCCeEEEeCCCC
Q psy208 376 RRQLGGFGVSGDLALQFVGSLSGGQKSRV---AFARMCMAAPNFLVLDEPTN 424 (443)
Q Consensus 376 ~~~L~~~gl~~~~~~~~~~~LSgGekqRl---~lA~al~~~p~lLiLDEPTn 424 (443)
..++..+++. .+..+|+|+.+++ +|++++..+|+++|+|+|..
T Consensus 152 ~~~~~~~gl~------~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 152 KIWGERVGAT------VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHTCE------EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHcCCc------EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 3344444543 1346789999999 89999999999999999985
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-11 Score=116.30 Aligned_cols=115 Identities=16% Similarity=0.089 Sum_probs=76.7
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQE 373 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~ 373 (443)
++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+ +..+... . .....+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l--------~~~d~~~----~-~~~~ql---------- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL--------VAADTQR----P-AAREQL---------- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE--------EECCSSC----H-HHHHHH----------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------ecCCccc----H-hHHHHH----------
Confidence 567777 89999999999999999999999999888887654 2222210 0 001111
Q ss_pred HHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC-CCCCCHHHHHHHHHHH
Q psy208 374 EYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP-TNHLDIETIEALGKAI 438 (443)
Q Consensus 374 ~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP-Tn~LD~~s~~~l~~~L 438 (443)
..+....++.- ... ....+..+.+|.+|+.+...+++++|+||| +.++|......+..+.
T Consensus 146 --~~~~~~~~l~~--~~~-~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~ 206 (295)
T 1ls1_A 146 --RLLGEKVGVPV--LEV-MDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLK 206 (295)
T ss_dssp --HHHHHHHTCCE--EEC-CTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHH
T ss_pred --HHhcccCCeEE--EEc-CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHh
Confidence 11122233321 000 011234455788999888899999999999 9999998887776654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=104.41 Aligned_cols=64 Identities=19% Similarity=0.221 Sum_probs=47.4
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++++.+||||||| .+...+.+.|++ .+.|||+||||.+++. .||+|+.|++
T Consensus 134 ~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 212 (243)
T 1mv5_A 134 GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEK 212 (243)
T ss_dssp STTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEET
T ss_pred ccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEEC
Confidence 4567899999999 122233333321 3789999999999986 5999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++. ..|+.++..
T Consensus 213 G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 213 GQIT-GSGKHNELV 225 (243)
T ss_dssp TEEC-CCSCHHHHH
T ss_pred CEEE-EeCCHHHHH
Confidence 9986 568876653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=107.38 Aligned_cols=126 Identities=11% Similarity=0.077 Sum_probs=83.1
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCC
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGT 91 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 91 (443)
++|++.+.|.+.|+ +|+|.+... -.++|++|++.. ...|+.+.+.-..
T Consensus 49 STLlk~l~Gl~~p~----~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~--------------------- 103 (214)
T 1sgw_A 49 TTLLKTISTYLKPL----KGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVA--------------------- 103 (214)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHH---------------------
T ss_pred HHHHHHHhcCCCCC----CeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHH---------------------
Confidence 56667776666655 499987531 259999999864 3345554432100
Q ss_pred CChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-------------------------
Q psy208 92 ADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------- 146 (443)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------- 146 (443)
.+... ..+ +.++..+++.+|++.. ++++.+|||||||
T Consensus 104 --------------~~~~~-~~~-~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 104 --------------SLYGV-KVN-KNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp --------------HHTTC-CCC-HHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred --------------HhcCC-chH-HHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 00001 122 4678889999999854 8899999999999
Q ss_pred -HHHHHHHHHhhh---CCCeEEEEecCHHHHhccCCcEEEEeCCee
Q psy208 147 -MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVPTDIFHLHSQRI 188 (443)
Q Consensus 147 -~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~~~i~~l~~g~i 188 (443)
.+...+.+.|++ .+.|||+||||.+++..+|++|+.+ .++|
T Consensus 166 ~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 166 EDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp TTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 344444444432 3679999999999999999988754 4433
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-13 Score=136.12 Aligned_cols=142 Identities=24% Similarity=0.322 Sum_probs=90.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCC-------CEEEEECCCCCcHHHHHHHHHcCC----CCCCceEEEc-------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLE-------SRICIVGDNGAGKTTLLKIIMGII----SPTAGTRTVH------- 337 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~G-------e~i~iiG~NGsGKSTLlk~l~G~~----~p~~G~i~~~------- 337 (443)
.++.++++..|+ ...+++++++.|.+| +.++|+||||+|||||+++|+|.+ .|++|.+...
T Consensus 18 ~lr~~~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 18 FLRPKSLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TTSCSSGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred HcCCccHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 355667777774 467899999999877 899999999999999999999988 6677765421
Q ss_pred ----CceEEEEeccCcccccccchhHHHHHHH---hCC-------CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 338 ----RNLKFGYFSQHHVDQLDMNLRCVQLLEA---AFP-------GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 338 ----~~~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~-------~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
....+.|++|.+ .+.. +..+.+.. ... ......+...+..+++.. ...++..||+|+++|
T Consensus 97 ~~~~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR 170 (334)
T 1in4_A 97 LTSLERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSR 170 (334)
T ss_dssp HHHCCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTT
T ss_pred HHHccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHh
Confidence 123588888754 2332 33333321 111 111223334455566642 456788999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+.++ .+||+.+.+.+.+.|.+
T Consensus 171 ~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 171 FGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp CSEE----------------EECCCCCHHHHHHHHHH
T ss_pred cCce----------------eeCCCCCHHHHHHHHHH
Confidence 8554 56666666676666654
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=104.73 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=50.1
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
++++.+||||||| .+...+.+.|+++ +.|||+||||.+++. .||+|+.|++
T Consensus 150 ~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~ 228 (260)
T 2ghi_A 150 GNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNK 228 (260)
T ss_dssp SSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEET
T ss_pred cCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEEC
Confidence 4678999999999 4555555555432 679999999999986 4999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++. ..|+.++..
T Consensus 229 G~i~-~~g~~~~l~ 241 (260)
T 2ghi_A 229 GKIV-EKGTHKDLL 241 (260)
T ss_dssp TEEE-EEECHHHHH
T ss_pred CEEE-EECCHHHHH
Confidence 9996 457776653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-13 Score=133.07 Aligned_cols=136 Identities=16% Similarity=0.131 Sum_probs=82.9
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCce-----------EEEEeccCcccccccchh
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNL-----------KFGYFSQHHVDQLDMNLR 358 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~-----------~ig~~~Q~~~~~l~~~~~ 358 (443)
..+|+++++.+++| ++|+||||||||||+|+|+|...+ |.+.+.... .+++++|... ...+...
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~-~~~p~i~ 107 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAK-NSAPCVI 107 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHH-HTCSEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHH-hcCCCeE
Confidence 45789999999999 999999999999999999999876 555553211 1112222100 0000000
Q ss_pred HHHHHHHhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC------------CC
Q psy208 359 CVQLLEAAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN------------HL 426 (443)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn------------~L 426 (443)
.++.+.......... ..+......++.+..|||||+||+.|++++..+|++| |||+. .-
T Consensus 108 ~~Deid~~~~~r~~~-------~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P 178 (274)
T 2x8a_A 108 FFDEVDALCPRRSDR-------ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLP 178 (274)
T ss_dssp EEETCTTTCC----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSC
T ss_pred eeehhhhhhcccCCC-------cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCc
Confidence 000000000000000 0111123456677889999999999999999999975 99864 34
Q ss_pred CHHHHHHHHHHHc
Q psy208 427 DIETIEALGKAIN 439 (443)
Q Consensus 427 D~~s~~~l~~~L~ 439 (443)
|...+..+.+.+.
T Consensus 179 ~~~~r~~il~~~~ 191 (274)
T 2x8a_A 179 PPADRLAILKTIT 191 (274)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH
Confidence 7777877777654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.3e-11 Score=103.98 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=55.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
+|+.++|+||||||||||+++|++...+ +|. .+.|++... +...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~~---~~~~------------------------- 78 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAAS---MPLT------------------------- 78 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETTT---SCCC-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHHH---hhHH-------------------------
Confidence 8999999999999999999999998876 452 233444321 1000
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+++.+|++||||||+. ++...++.|.+.+..
T Consensus 79 ---------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~ 109 (149)
T 2kjq_A 79 ---------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNR 109 (149)
T ss_dssp ---------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHH
T ss_pred ---------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHH
Confidence 2356899999999998 666558788777654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-10 Score=113.71 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=63.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-CCCCCCceEEEcC---------ceEEEEeccCcccccccchhHHHHHHHhCCCCCHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMG-IISPTAGTRTVHR---------NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G-~~~p~~G~i~~~~---------~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (443)
.+.|+||||+|||||+++|++ ++.|+.|.+.+.+ ...++++++.....+..... .......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM---------GNNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC-------------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc---------CCcchHH
Confidence 399999999999999999999 7899999876542 12355666543221111100 0011112
Q ss_pred HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcccc
Q psy208 375 YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKYT 442 (443)
Q Consensus 375 ~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~~ 442 (443)
++..+..+.-... ..... .||| +..+|+++|||||++ ||..+...|.+.|.+++
T Consensus 109 ~~~~i~~~~~~~~-~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQ-VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhcc-ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 3333332211100 01111 4566 778999999999999 99999999999998754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.8e-11 Score=121.74 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=47.8
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+.+++... ..+|+++||+|++ ++++|+|||||||||||++|+|+++|++|+|.+.
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 63 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFR 63 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEEC
Confidence 345555432 3489999999999 9999999999999999999999999999998653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.3e-09 Score=103.62 Aligned_cols=140 Identities=12% Similarity=0.095 Sum_probs=84.2
Q ss_pred hHHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMS 97 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 97 (443)
=++|++.+.|.+.|+. |+|.+.+ +++|++|++.....|+.+.+. +.. . ..
T Consensus 77 KSTLlk~l~Gl~~p~~----G~I~~~g--~i~~v~Q~~~l~~~tv~enl~-~~~-~-------------------~~--- 126 (290)
T 2bbs_A 77 KTSLLMMIMGELEPSE----GKIKHSG--RISFCSQNSWIMPGTIKENII-GVS-Y-------------------DE--- 126 (290)
T ss_dssp HHHHHHHHTTSSCEEE----EEEECCS--CEEEECSSCCCCSSBHHHHHH-TTC-C-------------------CH---
T ss_pred HHHHHHHHhcCCCCCC----cEEEECC--EEEEEeCCCccCcccHHHHhh-Ccc-c-------------------ch---
Confidence 3566667766666554 9999876 699999998654346666554 210 0 00
Q ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHhCCCCh-hhhhccCCCCChHHHH--------------------------HHHH
Q psy208 98 TELTQVFAELEAIEADKAPARASVILAGLGFTP-EMQKRATKHFSGGWRK--------------------------MAII 150 (443)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~-~~~~~~~~~LSGGqr~--------------------------~~i~ 150 (443)
..+.+..+ .. . +...+..+.... ...++++.+||||||| .+..
T Consensus 127 ~~~~~~~~---~~---~----l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 127 YRYRSVIK---AC---Q----LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp HHHHHHHH---HT---T----CHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred HHHHHHHH---Hh---C----hHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 00000000 00 0 112233332211 1134567899999999 5666
Q ss_pred HHHHHh-hh--CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 151 WLENYL-QN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 151 wL~~~L-~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+.+.+ +. .+.|||+||||.+++. .||+|+.|++|++. +.|++++..
T Consensus 197 ~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 197 EIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSY-FYGTFSELQ 246 (290)
T ss_dssp HHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEE-EeCCHHHHh
Confidence 777753 22 2679999999999986 59999999999996 457776653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=102.79 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=28.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc--CCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMG--IISP 329 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p 329 (443)
-|++|++++|+||||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 488999999999999999999999999 5665
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-11 Score=120.86 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=70.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------------eEEEEeccCcccccccchhHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------------LKFGYFSQHHVDQLDMNLRCVQL 362 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------------~~ig~~~Q~~~~~l~~~~~~~~~ 362 (443)
..+|++++|+||||||||||+++|+|+++|++|+|.+... ..+.|++|.. .+++..++.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 4689999999999999999999999999999999876421 1244777753 34455555555
Q ss_pred HHHhCC-CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHH
Q psy208 363 LEAAFP-GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIE 429 (443)
Q Consensus 363 ~~~~~~-~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~ 429 (443)
+..... ... .-++...|... .....+..|| .+++++..++.+++||.+|. .|..
T Consensus 204 l~~~~~~~~d----~vliDtaG~~~-~~~~l~~eL~-------~i~ral~~de~llvLDa~t~-~~~~ 258 (328)
T 3e70_C 204 IQHAKARGID----VVLIDTAGRSE-TNRNLMDEMK-------KIARVTKPNLVIFVGDALAG-NAIV 258 (328)
T ss_dssp HHHHHHHTCS----EEEEEECCSCC-TTTCHHHHHH-------HHHHHHCCSEEEEEEEGGGT-THHH
T ss_pred HHHHHhccch----hhHHhhccchh-HHHHHHHHHH-------HHHHHhcCCCCEEEEecHHH-HHHH
Confidence 432100 000 00122223211 1112223343 38899999999999996654 4443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=98.94 E-value=9.9e-09 Score=109.61 Aligned_cols=65 Identities=20% Similarity=0.247 Sum_probs=51.0
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.+....+||||||| .+...+.+.|++. +.|+|+||||.+.+. .||+|++|+
T Consensus 474 ~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b5x_A 474 IGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVD 552 (582)
T ss_pred hcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEE
Confidence 45667899999999 4445555555432 679999999999987 699999999
Q ss_pred CCeeEEEcCChhHHH
Q psy208 185 SQRIDTYRGNYEAFD 199 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~ 199 (443)
+|++. ..|++++..
T Consensus 553 ~G~i~-~~g~~~~l~ 566 (582)
T 3b5x_A 553 EGEII-ERGRHADLL 566 (582)
T ss_pred CCEEE-EECCHHHHH
Confidence 99996 468876653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-11 Score=117.43 Aligned_cols=99 Identities=11% Similarity=-0.002 Sum_probs=62.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc-----------eEEEEeccCcccc------------
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN-----------LKFGYFSQHHVDQ------------ 352 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~-----------~~ig~~~Q~~~~~------------ 352 (443)
++..|++++|+||||||||||||+|+|+.+|++|+|.+ .+. ..+||++|.|...
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34568999999999999999999999999999999886 210 1368899886311
Q ss_pred --cccchhHHHHHHH--h-CCCCCHHHHHHHHhcCCCChhhhhccCCCCCH
Q psy208 353 --LDMNLRCVQLLEA--A-FPGKPQEEYRRQLGGFGVSGDLALQFVGSLSG 398 (443)
Q Consensus 353 --l~~~~~~~~~~~~--~-~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSg 398 (443)
+.+..++ +++.. . ........+.++|+.+++..+..++++..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1222222 21110 0 01122346788999999976677888888885
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=6.8e-09 Score=105.34 Aligned_cols=79 Identities=8% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCChhhhhccCCC-----------CChHHHH--------------------------HHHHHHHHHhhhC
Q psy208 117 ARASVILAGLGFTPEMQKRATKH-----------FSGGWRK--------------------------MAIIWLENYLQNW 159 (443)
Q Consensus 117 ~rv~~~L~~lgl~~~~~~~~~~~-----------LSGGqr~--------------------------~~i~wL~~~L~~~ 159 (443)
.++.++|..+|+.+ ..++.+.. ||||||| .....+.+.|++.
T Consensus 123 ~~v~~~l~~~~L~~-~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~ 201 (390)
T 3gd7_A 123 QEIWKVADEVGLRS-VIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA 201 (390)
T ss_dssp HHHHHHHHHTTCHH-HHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHH-HHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 46778888899874 46788877 9999999 4555666666543
Q ss_pred --CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 160 --PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 160 --~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.|+|+||||.+.+. .||+|++|++|++..+ |+..+.
T Consensus 202 ~~~~tvi~vtHd~e~~~-~aDri~vl~~G~i~~~-g~~~el 240 (390)
T 3gd7_A 202 FADCTVILCEARIEAML-ECDQFLVIEENKVRQY-DSILEL 240 (390)
T ss_dssp TTTSCEEEECSSSGGGT-TCSEEEEEETTEEEEE-SSHHHH
T ss_pred hCCCEEEEEEcCHHHHH-hCCEEEEEECCEEEEE-CCHHHH
Confidence 679999999998775 4999999999999754 776543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.9e-10 Score=117.43 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=47.9
Q ss_pred ccCCCC-CHHHHHHHHHHHHhccCC--CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSL-SGGQKSRVAFARMCMAAP--NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~L-SgGekqRl~lA~al~~~p--~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..| ||||+|||+||++++.+| ++|||||||+|||+.+...+.+.|.++
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~ 445 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL 445 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence 577888 999999999999999999 999999999999999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.9e-09 Score=110.48 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=51.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.++...+||||||| .+...+.+.|++ .+.|+|+||||...+. .||+|++|+
T Consensus 473 ~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~ 551 (587)
T 3qf4_A 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLH 551 (587)
T ss_dssp ECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEE
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEE
Confidence 46778999999999 344445555533 3689999999999986 799999999
Q ss_pred CCeeEEEcCChhHHHH
Q psy208 185 SQRIDTYRGNYEAFDK 200 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~ 200 (443)
+|++.. .|++++..+
T Consensus 552 ~G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 552 EGKVAG-FGTHKELLE 566 (587)
T ss_dssp TTEEEE-EECHHHHHH
T ss_pred CCEEEE-ECCHHHHHh
Confidence 999974 588877654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.7e-09 Score=110.41 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeCC
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g 186 (443)
....+||||||| .+...+.+.|++ .+.|+|+||||.+.+.. ||+|++|++|
T Consensus 487 ~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G 565 (598)
T 3qf4_B 487 DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDG 565 (598)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSS
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECC
Confidence 445799999999 333344444432 37899999999999976 9999999999
Q ss_pred eeEEEcCChhHHHH
Q psy208 187 RIDTYRGNYEAFDK 200 (443)
Q Consensus 187 ~i~~~~G~y~~y~~ 200 (443)
++. ..|++++...
T Consensus 566 ~i~-~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIV-EMGKHDELIQ 578 (598)
T ss_dssp SEE-ECSCHHHHHH
T ss_pred EEE-EECCHHHHHh
Confidence 996 5688877643
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=107.50 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=49.9
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.+....+||||||| .+...+.+.|++ .+.|+|+||||.+.+. .||+|++|+
T Consensus 474 ~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~ 552 (582)
T 3b60_A 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVE 552 (582)
T ss_dssp CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEE
Confidence 34567899999999 344455555533 2789999999999886 599999999
Q ss_pred CCeeEEEcCChhHHH
Q psy208 185 SQRIDTYRGNYEAFD 199 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~ 199 (443)
+|++.. .|++++..
T Consensus 553 ~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 553 DGIIVE-RGTHSELL 566 (582)
T ss_dssp TTEEEE-EECHHHHH
T ss_pred CCEEEE-ecCHHHHH
Confidence 999974 58876653
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.3e-10 Score=114.89 Aligned_cols=34 Identities=35% Similarity=0.398 Sum_probs=30.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC--------CCCCceEEEc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII--------SPTAGTRTVH 337 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~--------~p~~G~i~~~ 337 (443)
++++|+|+||||||||||+|.|.. .|+.|+|.++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~id 46 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVD 46 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCcc
Confidence 478999999999999999999997 7899988764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=98.83 E-value=2.2e-08 Score=106.77 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred hccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeC
Q psy208 134 KRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHS 185 (443)
Q Consensus 134 ~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~ 185 (443)
+....+||||||| .+...+.+.|++ .+.|+|+||||.+++.. ||+|++|++
T Consensus 472 ~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~ 550 (578)
T 4a82_A 472 GERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 550 (578)
T ss_dssp CGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEET
T ss_pred ccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEEC
Confidence 4556899999999 334444444432 36799999999999865 999999999
Q ss_pred CeeEEEcCChhHHH
Q psy208 186 QRIDTYRGNYEAFD 199 (443)
Q Consensus 186 g~i~~~~G~y~~y~ 199 (443)
|++.. .|++++..
T Consensus 551 G~i~~-~g~~~el~ 563 (578)
T 4a82_A 551 GHIVE-TGTHRELI 563 (578)
T ss_dssp TEEEE-EECHHHHH
T ss_pred CEEEE-ECCHHHHH
Confidence 99974 58877654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.7e-10 Score=103.14 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=22.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH-cCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIM-GII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~-G~~ 327 (443)
....++||++.+|++++|+||||||||||+++|+ |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-09 Score=104.66 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=28.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHH--HHcCCCCCCc
Q psy208 299 GATLESRICIVGDNGAGKTTLLKI--IMGIISPTAG 332 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~--l~G~~~p~~G 332 (443)
-|.+|++++|+||||||||||++. +.+..+|+.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 478999999999999999999994 4677777655
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-12 Score=116.82 Aligned_cols=119 Identities=12% Similarity=0.078 Sum_probs=66.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----eEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHH
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----LKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR 377 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 377 (443)
|++++|+||||||||||+++|++ |.+|.+.+... ...++++|.. ......++.+.+... +..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~--------~~~ 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWE--SDELLALTWKNITDL--------TVN 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGG--CHHHHHHHHHHHHHH--------HHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCcc--chhHHHHHHHHHHHH--------HHH
Confidence 67899999999999999999997 67888776431 1234444432 111122333322210 011
Q ss_pred H--------HhcCCCChhhhhccCCCC--CHHHHHHHHHHH------HhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 378 Q--------LGGFGVSGDLALQFVGSL--SGGQKSRVAFAR------MCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 378 ~--------L~~~gl~~~~~~~~~~~L--SgGekqRl~lA~------al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
+ +..+. . ....+.+..+ |+|+++++.++. +++.+|....+|+ +||+..+.. .+.+..
T Consensus 69 ~~~~~~~~ild~~~-~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~ 141 (189)
T 2bdt_A 69 FLLAQNDVVLDYIA-F-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFES 141 (189)
T ss_dssp HHHTTCEEEEESCC-C-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHH
T ss_pred HHhcCCcEEEeecc-C-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhh
Confidence 1 11111 1 1111222345 888888877777 7788888777883 788877766 555543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-10 Score=112.25 Aligned_cols=102 Identities=12% Similarity=0.119 Sum_probs=56.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE---cCc--------eE--EEEeccCccccc-cc-chhHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV---HRN--------LK--FGYFSQHHVDQL-DM-NLRCVQLL 363 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~---~~~--------~~--ig~~~Q~~~~~l-~~-~~~~~~~~ 363 (443)
++.+|++++|+||||||||||+|+|+|..+|++|+|.. .+. .. +||++|.|.... .. ..+. +.+
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l 247 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EEL 247 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHH
Confidence 34579999999999999999999999999999999875 110 11 589999864221 11 2233 322
Q ss_pred HH-------h-----CC-----CCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 364 EA-------A-----FP-----GKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 364 ~~-------~-----~~-----~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
.. . +. ......+.++++.+++.... ......|+.|+++
T Consensus 248 ~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r-~~~y~~lls~~~~ 302 (307)
T 1t9h_A 248 GYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYR-YDHYVEFMTEIKD 302 (307)
T ss_dssp GGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHH-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHH-HHHHHHHHHHHhh
Confidence 10 0 11 12234678899999987433 3444556667766
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-09 Score=106.02 Aligned_cols=51 Identities=31% Similarity=0.425 Sum_probs=45.9
Q ss_pred ccCCCCCHHHHHHH------HHHHHhccC-CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSLSGGQKSRV------AFARMCMAA-PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~LSgGekqRl------~lA~al~~~-p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 333 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV 333 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh
Confidence 56789999999988 557888899 9999999999999999999999998764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.77 E-value=4.6e-09 Score=107.92 Aligned_cols=52 Identities=31% Similarity=0.462 Sum_probs=47.8
Q ss_pred hccCCCCCHHHHHHHHHHHHhc----cCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 390 LQFVGSLSGGQKSRVAFARMCM----AAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 390 ~~~~~~LSgGekqRl~lA~al~----~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+++..||||||+|++||++|+ .+|++|||||||++||+..+..|.+.|.++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 383 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH 383 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999 589999999999999999999999998765
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=100.04 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHh
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLG 380 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 380 (443)
.+|++++|+|+|||||||+++.|++.+.+++|. ++.++.+++.. ....+. +..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~r-----~~a~eq------------L~~~~~ 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTYR-----IAAVEQ------------LKTYAE 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCSS-----TTHHHH------------HHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCccc-----chHHHH------------HHHHHH
Confidence 468999999999999999999999999887782 45666666421 111222 222223
Q ss_pred cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHH
Q psy208 381 GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435 (443)
Q Consensus 381 ~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~ 435 (443)
.+|+... ...+ +..-+.+|++ +.+|+++|+| |+++|......+.
T Consensus 159 ~~gl~~~------~~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~ 202 (296)
T 2px0_A 159 LLQAPLE------VCYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYID 202 (296)
T ss_dssp TTTCCCC------BCSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHH
T ss_pred hcCCCeE------ecCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHH
Confidence 3443210 0122 2334566664 4899999999 8899986654443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-11 Score=122.68 Aligned_cols=130 Identities=12% Similarity=0.058 Sum_probs=80.5
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC----c--eEEEEeccCcccccccchhHHHHHH
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR----N--LKFGYFSQHHVDQLDMNLRCVQLLE 364 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~--~~ig~~~Q~~~~~l~~~~~~~~~~~ 364 (443)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+.... . ..+|+++|.... +..+.+....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~-l~dd~~~~~~~~ 232 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKGTGGES 232 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCE-EETTCCCSTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHH-HHHHHHHHHHHH
Confidence 589999999999999999999999999999999985 467765411 1 124444554311 000000000000
Q ss_pred HhCCCCC----HHHHHHHHh---------------cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEE-EeCCCC
Q psy208 365 AAFPGKP----QEEYRRQLG---------------GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLV-LDEPTN 424 (443)
Q Consensus 365 ~~~~~~~----~~~~~~~L~---------------~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLi-LDEPTn 424 (443)
....... ...+...+. ...+.+...+.....+++|+++|+..+.+++..|++++ ||+|+.
T Consensus 233 r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 233 RDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp TTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred hhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 0000000 012233332 11222334556778899999999998888889999888 999886
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.8e-10 Score=105.76 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=36.1
Q ss_pred CeEEEeee-EEEeCCCCceeeeeeEEEeC---CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 275 PILQLSEV-NFEYVPGKPILTNVCLGATL---ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 275 ~~l~~~~l-~~~y~~~~~il~~vsl~i~~---Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++|+++|+ +++|+++.++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57999999 99994457899999999999 9999999999999999999999854
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-09 Score=117.18 Aligned_cols=153 Identities=13% Similarity=0.129 Sum_probs=98.6
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC-ceEEEcC------ceEEEEeccCcccc
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA-GTRTVHR------NLKFGYFSQHHVDQ 352 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~-G~i~~~~------~~~ig~~~Q~~~~~ 352 (443)
++++.-|+ ...+++++++.+..|+.++|+||||+|||||+++|++.+++.. |.+.+.. ...++|+++.....
T Consensus 38 ~~l~~i~G-~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 38 KLIDQVIG-QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp SHHHHCCS-CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred cccceEEC-chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34444454 5678999999999999999999999999999999999999887 5555432 23567776543111
Q ss_pred cccchhHHHHHHHhCC-------------------------C-----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH
Q psy208 353 LDMNLRCVQLLEAAFP-------------------------G-----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS 402 (443)
Q Consensus 353 l~~~~~~~~~~~~~~~-------------------------~-----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq 402 (443)
+.. ........... . ........+++.+... ....+.+|+|+++
T Consensus 117 ~~e--~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~----~~~~g~~~~g~~~ 190 (604)
T 3k1j_A 117 IVE--KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD----PFQSGGLGTPAHE 190 (604)
T ss_dssp HHH--HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC----CC----CCCCGGG
T ss_pred HHH--HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec----hhhcCCccccccc
Confidence 000 00000000000 0 0001122233322111 1223569999999
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
++..+++...++.+|+|||... |++..+..|.++|.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9988888889999999999987 899999999998864
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.66 E-value=5e-10 Score=105.53 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=42.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.|+++|++..|+ . +|++.+ ++++|+|||||||||||++|+|++.|++|.|.+
T Consensus 9 ~l~l~~~~~~~~--~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 9 SLTLINWNGFFA--R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp EEEEEEETTEEE--E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred EEEEEeeecccC--C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 588888876552 1 466666 899999999999999999999999999998754
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-08 Score=93.39 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|+++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.62 E-value=3e-08 Score=89.08 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=41.2
Q ss_pred EEeeeEEEeCCCCcee--eeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 278 QLSEVNFEYVPGKPIL--TNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il--~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
.++.|... +...+ +++++.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 3 ~i~~l~i~---nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 3 YIEKLELK---GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp EEEEEEEE---SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred eEEEEEEe---CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 34455543 12356 7889999999 99999999999999999999988887663
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.4e-09 Score=93.29 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 403 RVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 403 Rl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.+.+|++++.+|+++++| |+++|..+++.+.+.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999988764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.58 E-value=8.2e-09 Score=108.42 Aligned_cols=48 Identities=29% Similarity=0.423 Sum_probs=44.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
.+++++++.+.+|+.++|+|||||||||||++|+|+++|++|.|++.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 478899999999999999999999999999999999999999998754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=2.1e-09 Score=109.21 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=71.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHc------------CCCCCCceEEEcCc------------eE---EEEeccCccc
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMG------------IISPTAGTRTVHRN------------LK---FGYFSQHHVD 351 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G------------~~~p~~G~i~~~~~------------~~---ig~~~Q~~~~ 351 (443)
.+.+|.+++|+|+||||||||+++|+| .+.|+.|.+.+.+. .. ..++.+.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG- 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG- 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc-
Confidence 456899999999999999999999999 56788898877531 11 123333332
Q ss_pred ccccchhHHHHHHHhCCCCCHHHHHHHHh-------cCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC--CeEEEeCC
Q psy208 352 QLDMNLRCVQLLEAAFPGKPQEEYRRQLG-------GFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP--NFLVLDEP 422 (443)
Q Consensus 352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~-------~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p--~lLiLDEP 422 (443)
+....+..+ ... ..+...+. .+... .+..+..+||+. +| +++++|||
T Consensus 95 -l~~~~s~~e-------~L~-~~fl~~ir~~d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 95 -LTKGASTGV-------GLG-NAFLSHVRAVDAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp -GCCCCCSSS-------SSC-HHHHHHHTTCSEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred -cccCCcHHH-------HHH-HHHHHHHHHHHHHHHHHhcc---ccceeeeecccc------------Ccchhhhhchhh
Confidence 111101000 000 01111111 11111 123444566653 88 99999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
+..+|+..++...+.+...
T Consensus 151 l~~~D~~~~~k~~~~l~~~ 169 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKI 169 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 9999999998877776543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-08 Score=90.86 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=65.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC-------------CCCceEEEcCceEEEEeccCcccccccchhHHHHHH---
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS-------------PTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE--- 364 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~-------------p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~--- 364 (443)
.+|.+++|+||||||||||+++|+|+++ |..|++ ++ +.|.++... .+ ...+.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~g---~~~~~~~~~-~~------~~~i~~~~ 69 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--DG---KDYYFVTRE-MM------QRDIAAGD 69 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--BT---TTBEECCHH-HH------HHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--CC---ceEEEccHH-HH------HHHHHcCC
Confidence 5799999999999999999999999875 555542 11 112222110 00 00000
Q ss_pred --------HhCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHH----HHHHHH-HhccCCCeEEEeCCCCCCCHHHH
Q psy208 365 --------AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKS----RVAFAR-MCMAAPNFLVLDEPTNHLDIETI 431 (443)
Q Consensus 365 --------~~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekq----Rl~lA~-al~~~p~lLiLDEPTn~LD~~s~ 431 (443)
....+.+...+.+.+..-... ..+. .+ .|-+. ++ .++ +++.+|++++|||||+++|.++.
T Consensus 70 ~l~~~~~~~n~~g~~~~~i~~~~~~~~~~--~~~~---~~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e 142 (198)
T 1lvg_A 70 FIEHAEFSGNLYGTSKEAVRAVQAMNRIC--VLDV---DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQRLRLRNTETE 142 (198)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEC---CH-HHHHHHTTSSC-CCEEEEEECSCHHHHHHHHHHHTCSCH
T ss_pred CEeeeeecCccCCCCHHHHHHHHHcCCcE--EEEC---CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHHHHhcCCCCH
Confidence 000011334455555421100 0000 00 11111 12 455 68889999999999999999888
Q ss_pred HHHHHHHcc
Q psy208 432 EALGKAINK 440 (443)
Q Consensus 432 ~~l~~~L~~ 440 (443)
+.+.+.|..
T Consensus 143 ~~i~~~l~~ 151 (198)
T 1lvg_A 143 ESLAKRLAA 151 (198)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.44 E-value=9.2e-08 Score=87.26 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=29.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
++|.+|++++|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999977655
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-08 Score=87.99 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=30.1
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
...|++++.+|+++++| |+++|...++.+.+.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 34588889999999999 999999999998887754
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-08 Score=90.52 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=40.2
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
+|+++.++ .....+..++..++|++++|+|+||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHEC-SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------C-CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCccccc-ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 46666653 4557778888889999999999999999999999999987 67876
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=88.99 Aligned_cols=77 Identities=17% Similarity=0.168 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHhCCCChhhhh-----------------------------ccCCC-CChHHHH-----------------
Q psy208 114 KAPARASVILAGLGFTPEMQK-----------------------------RATKH-FSGGWRK----------------- 146 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~-----------------------------~~~~~-LSGGqr~----------------- 146 (443)
.++..+...+..++++...+. +++.. ||||||+
T Consensus 240 ~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~L 319 (415)
T 4aby_A 240 PLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSV 319 (415)
T ss_dssp HHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEE
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEE
Confidence 456678888999987641110 34444 5999999
Q ss_pred -----------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEE----eCCeeEEE
Q psy208 147 -----------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHL----HSQRIDTY 191 (443)
Q Consensus 147 -----------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l----~~g~i~~~ 191 (443)
.++.||.++|+++ ++|||+||||+++++ +||++++| ++|++...
T Consensus 320 lLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 320 VFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp EESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TCSEEEEEEEEEETTEEEEE
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hcCeEEEEEEeccCCceEEE
Confidence 6888999999876 589999999999985 69999999 88887543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.4e-07 Score=91.27 Aligned_cols=131 Identities=20% Similarity=0.283 Sum_probs=73.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-----------CCCceEEEcCceEE------EEeccCcccccccchhHHHHHHH--
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS-----------PTAGTRTVHRNLKF------GYFSQHHVDQLDMNLRCVQLLEA-- 365 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~-----------p~~G~i~~~~~~~i------g~~~Q~~~~~l~~~~~~~~~~~~-- 365 (443)
+++|+|+||||||||++.|+|... |+.|.+.+.+ ..+ |++.+.+...........+.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g-~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN-RKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT-EEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC-EEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 389999999999999999999876 4556776654 222 22222111000000001111110
Q ss_pred ----hCC-CCCH----H---HHHHHHhcCCCChh---hhhccCCCCCHHHHHHHHHH----HHh-ccCCCeEEEeCCCCC
Q psy208 366 ----AFP-GKPQ----E---EYRRQLGGFGVSGD---LALQFVGSLSGGQKSRVAFA----RMC-MAAPNFLVLDEPTNH 425 (443)
Q Consensus 366 ----~~~-~~~~----~---~~~~~L~~~gl~~~---~~~~~~~~LSgGekqRl~lA----~al-~~~p~lLiLDEPTn~ 425 (443)
.+. .... . .+..++..+++... ....++..+|+|+++++.++ +.+ ..+|++ +|||+
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA 335 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISA 335 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBT
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEEC
Confidence 000 1111 1 13455666554321 11234566888888888776 555 434444 79999
Q ss_pred CCHHHHHHHHHHHcc
Q psy208 426 LDIETIEALGKAINK 440 (443)
Q Consensus 426 LD~~s~~~l~~~L~~ 440 (443)
+|....+.|.+.|.+
T Consensus 336 ~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 336 LKRTNLELLRDKIYQ 350 (364)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999999888764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.28 E-value=9.5e-07 Score=88.40 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCceEE-EcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRT-VHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF 382 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~-~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 382 (443)
-+++|+|+||+|||||++.|+|.... .|... ......++.+.+... .+. +++.-
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~-~~~-----------------------l~Dt~ 222 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPE-IASYPFTTRGINVGQFEDGYF-RYQ-----------------------IIDTP 222 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCE-EECCTTCSSCEEEEEEEETTE-EEE-----------------------EEECT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCeeeceeEEEEEecCc-eEE-----------------------EEeCC
Confidence 36999999999999999999987521 11100 011122333332210 000 00111
Q ss_pred CCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe-CCCCCCCHHHHHHHHHHHc
Q psy208 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD-EPTNHLDIETIEALGKAIN 439 (443)
Q Consensus 383 gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD-EPTn~LD~~s~~~l~~~L~ 439 (443)
|+ .+.++..+|+|+++++. +.+...++-++++| +|++++|......+.+.+.
T Consensus 223 G~----~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~ 275 (357)
T 2e87_A 223 GL----LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH 275 (357)
T ss_dssp TT----SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred Cc----cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence 21 12456679999988775 55555677789999 9999999988776666554
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-07 Score=90.55 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=33.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH---cCCCCCCceEE
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIM---GIISPTAGTRT 335 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i~ 335 (443)
.+|++++|+|||||||||++++|+ |+..|++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999876
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.2e-07 Score=83.07 Aligned_cols=38 Identities=32% Similarity=0.299 Sum_probs=24.7
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
...++|+||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-07 Score=82.94 Aligned_cols=33 Identities=12% Similarity=0.283 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC-CCceE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP-TAGTR 334 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p-~~G~i 334 (443)
+|++++|+||||||||||+++|++.+++ ..|.|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 6899999999999999999999998764 34544
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.7e-07 Score=82.77 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=29.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR 338 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~ 338 (443)
.+...+|++++|+|+||||||||+++|++.+ |.+.+..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 4566789999999999999999999999976 7776643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.4e-06 Score=78.72 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=28.5
Q ss_pred ceeeee-eEEEeCCCEEEEECCCCCcHHHHHHHH-HcCC
Q psy208 291 PILTNV-CLGATLESRICIVGDNGAGKTTLLKII-MGII 327 (443)
Q Consensus 291 ~il~~v-sl~i~~Ge~i~iiG~NGsGKSTLlk~l-~G~~ 327 (443)
+.|+.+ .--+.+|+.++|+||||||||||+..+ .+..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555 557899999999999999999996544 4443
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=3e-06 Score=74.31 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=42.1
Q ss_pred hhccCCCCChHHHH--------------------------------HHHHHHHHHhhhC---CCeEEEEecCHHHHhccC
Q psy208 133 QKRATKHFSGGWRK--------------------------------MAIIWLENYLQNW---PTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~~---~~tviiVSHDr~fLd~v~ 177 (443)
.++++.+||||||+ .+..++.+.|+++ +.|||+||||.+ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 46899999999998 4666788877554 579999999995 56799
Q ss_pred CcEEEEe
Q psy208 178 TDIFHLH 184 (443)
Q Consensus 178 ~~i~~l~ 184 (443)
++|+.|+
T Consensus 130 d~ii~l~ 136 (148)
T 1f2t_B 130 DHVIRIS 136 (148)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999994
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.3e-08 Score=101.87 Aligned_cols=132 Identities=8% Similarity=0.086 Sum_probs=71.2
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCceEEEc---Cce-EEEEeccCccc--ccccch-hHHHHHHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMG--IISPTAGTRTVH---RNL-KFGYFSQHHVD--QLDMNL-RCVQLLEA 365 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p~~G~i~~~---~~~-~ig~~~Q~~~~--~l~~~~-~~~~~~~~ 365 (443)
.+++++.++..+.|.|++||||||+++.|.. +..++.|++.+. ... .+..+..-+.. ....+. .....+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~~a~~~L~~ 238 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRW 238 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHHHHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHHHHHHHHHH
Confidence 4678888999999999999999999999876 455555665431 110 00000000000 000000 01111111
Q ss_pred hCCCCCHHHHHHHHhcCCCChhh-hh-ccCCCCCHHHHHHH----------HHHHHhccCCC-eEEEeCCCCCCCH
Q psy208 366 AFPGKPQEEYRRQLGGFGVSGDL-AL-QFVGSLSGGQKSRV----------AFARMCMAAPN-FLVLDEPTNHLDI 428 (443)
Q Consensus 366 ~~~~~~~~~~~~~L~~~gl~~~~-~~-~~~~~LSgGekqRl----------~lA~al~~~p~-lLiLDEPTn~LD~ 428 (443)
.. ...+.+ .+++...|+..-. .+ +....+|+||+|+. .+++++...|. ++|+||++..++.
T Consensus 239 ~~-~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~ 312 (512)
T 2ius_A 239 CV-NEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMT 312 (512)
T ss_dssp HH-HHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHH
T ss_pred HH-HHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhh
Confidence 10 001122 3567777764211 11 12245788887652 34556677887 8999999998874
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.7e-06 Score=89.99 Aligned_cols=97 Identities=24% Similarity=0.243 Sum_probs=62.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCC
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPG 369 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~ 369 (443)
...+.++++.+++| +.|+||+|+|||||+++|++.... .+-++.- .. + ..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is~--~~-~--------------~~ 87 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHISG--SD-F--------------VE 87 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEEG--GG-T--------------TT
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCCH--HH-H--------------HH
Confidence 34677788888877 899999999999999999985311 1111110 00 0 00
Q ss_pred CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC----------CCCCCHHHHHHHHHHHc
Q psy208 370 KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP----------TNHLDIETIEALGKAIN 439 (443)
Q Consensus 370 ~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP----------Tn~LD~~s~~~l~~~L~ 439 (443)
. + + =+++++.|..++++....|.+|++||+ +++.|......+.++|.
T Consensus 88 ~-------------~--------~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 88 L-------------F--------V--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp C-------------C--------T--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred H-------------H--------h--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 0 0 0 026778888999999999999999999 34666665555555543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.2e-07 Score=91.10 Aligned_cols=48 Identities=29% Similarity=0.447 Sum_probs=37.9
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
|+++|+ ++|+ +. . .+++.+|++++|+|||||||||||++|+++..|.+
T Consensus 7 l~~~~~-~~~~-~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYR-GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCC-SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEEC-Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 678888 6774 21 1 35567899999999999999999999999988865
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.1e-06 Score=90.76 Aligned_cols=127 Identities=13% Similarity=0.094 Sum_probs=73.3
Q ss_pred CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHH-----
Q psy208 290 KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE----- 364 (443)
Q Consensus 290 ~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~----- 364 (443)
-+.|+++..-+.+|+.+.|.|++|+|||||+..|++...+..|. .+.|+.-+.... ...........
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~s~~-~l~~r~~~~~~~~~~~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEMSAQ-QLVMRMLCAEGNINAQ 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSSCHH-HHHHHHHHHHHTCCHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCCCHH-HHHHHHHHHHcCCCHH
Confidence 35788888789999999999999999999999999876554442 345555432100 00000000000
Q ss_pred H-hCCCCCHHH---HHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhc--cCCCeEEEeCCCCCCC
Q psy208 365 A-AFPGKPQEE---YRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCM--AAPNFLVLDEPTNHLD 427 (443)
Q Consensus 365 ~-~~~~~~~~~---~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~--~~p~lLiLDEPTn~LD 427 (443)
. ........+ +...+..++.. ...-.....+|.++.+. .++.+. .+|+++|+|+|+...+
T Consensus 262 ~l~~g~l~~~~~~~~~~a~~~l~~~-~l~i~d~~~~s~~~i~~--~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 262 NLRTGKLTPEDWGKLTMAMGSLSNA-GIYIDDTPSIRVSDIRA--KCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHTSCCCHHHHHHHHHHHHHHHSS-CEEEECCTTCCHHHHHH--HHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhcC-CEEEECCCCCCHHHHHH--HHHHHHHHcCCCEEEEccHHHhcc
Confidence 0 001122222 22223222211 11122345799999874 445554 6899999999998874
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.8e-06 Score=79.56 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=27.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+|.+++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.6e-07 Score=81.58 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=33.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
..+|.+++|+|+||||||||+++|++.+++..|.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5678899999999999999999999999888887654
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-06 Score=95.44 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=72.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQL 379 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L 379 (443)
+..|+.++|+|||||||||++.++++...+..|. ...+.++. |...+. ......+........ .
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~-----g~~ilvl~--P~r~La--~q~~~~l~~~~~~~v-------~ 169 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE-----NTQVACTQ--PRRVAA--MSVAQRVAEEMDVKL-------G 169 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG-----TCEEEEEE--SCHHHH--HHHHHHHHHHTTCCB-------T
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC-----CceEEecC--chHHHH--HHHHHHHHHHhCCch-------h
Confidence 5678999999999999999999997765444320 11122221 111110 011111111110000 0
Q ss_pred hcCCC----Ch-hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHHHHHHHH
Q psy208 380 GGFGV----SG-DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIEALGKAI 438 (443)
Q Consensus 380 ~~~gl----~~-~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~~l~~~L 438 (443)
..+|. .. ...+..+..+|+|+.+|..++..++.+++++|+|||.. +||......+...+
T Consensus 170 ~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l 234 (773)
T 2xau_A 170 EEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQV 234 (773)
T ss_dssp TTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHH
T ss_pred heecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHH
Confidence 00110 00 01234567789999999999999999999999999996 89977665555444
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.8e-06 Score=84.41 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=46.9
Q ss_pred hhccCCCCChHHHH--------------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhccC
Q psy208 133 QKRATKHFSGGWRK--------------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v~ 177 (443)
+++++.+||||||+ .+..++.+.|++ .+.|||+||||.++ ...|
T Consensus 273 ~~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 273 IERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF 351 (365)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC
T ss_pred cCCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC
Confidence 35789999999998 566677777754 46899999999998 5679
Q ss_pred CcEEEEeCCeeE
Q psy208 178 TDIFHLHSQRID 189 (443)
Q Consensus 178 ~~i~~l~~g~i~ 189 (443)
++|+.|++|++.
T Consensus 352 d~~~~l~~G~i~ 363 (365)
T 3qf7_A 352 DRKLRITGGVVV 363 (365)
T ss_dssp SCEEEEETTEEC
T ss_pred CEEEEEECCEEE
Confidence 999999999885
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.8e-07 Score=82.97 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=31.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
+....+|++++|+|+||||||||+++|+|. .|.|.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 445678999999999999999999999997 6766553
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=5.1e-06 Score=83.05 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=32.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc--CCCCCCceEE
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG--IISPTAGTRT 335 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G--~~~p~~G~i~ 335 (443)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 47888888887 899999999999999999999 5677777654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.01 E-value=9.5e-07 Score=87.30 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=39.2
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+.+++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788888999999999999999999999999999988887754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-06 Score=78.71 Aligned_cols=32 Identities=13% Similarity=0.286 Sum_probs=26.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|+...+|..++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.9e-07 Score=87.85 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred eeEEEeCCCCceeeeeeEEEeCCC------EEEEECCCCCcHHHHHHHHHcCCC--CCCceE
Q psy208 281 EVNFEYVPGKPILTNVCLGATLES------RICIVGDNGAGKTTLLKIIMGIIS--PTAGTR 334 (443)
Q Consensus 281 ~l~~~y~~~~~il~~vsl~i~~Ge------~i~iiG~NGsGKSTLlk~l~G~~~--p~~G~i 334 (443)
.+++.|+ +...+++++..+..+. ++||+||||||||||+++|.+++. |++|.+
T Consensus 65 ll~~~~~-~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 65 LLSFYVT-ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHhhc-chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 3444453 3556777777777666 899999999999999999999987 455543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-06 Score=82.41 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=47.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
..+++++.+.|. ...+++++++.+++| ++|+||||||||||+++|++... .|.+.+.
T Consensus 25 ~~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~ 81 (254)
T 1ixz_A 25 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 81 (254)
T ss_dssp HHHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEee
Confidence 355677777774 457899999999999 99999999999999999999875 5666553
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=88.27 Aligned_cols=52 Identities=21% Similarity=0.139 Sum_probs=48.0
Q ss_pred eEEEeeeEEEeCCCCceee--------------eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 276 ILQLSEVNFEYVPGKPILT--------------NVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~--------------~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+.++||++.|+..+..++ |+++.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999987778899 899999999999999999999999999998865
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.6e-06 Score=83.32 Aligned_cols=56 Identities=20% Similarity=0.180 Sum_probs=46.5
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+++++.+.|. ...+++++++.+.+| ++|+||||||||||+++|++... .|.+.+.
T Consensus 50 ~~l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~ 105 (278)
T 1iy2_A 50 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITAS 105 (278)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEec
Confidence 45677777774 457899999999999 99999999999999999999875 5666553
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=78.15 Aligned_cols=94 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
-+.+|+++.|.||||||||||+..++.......| .+.|+.-+.. +.. . .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~--------~vlyi~~E~~--~~~--~-------------------~ 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG--------IAAFIDAEHA--LDP--E-------------------Y 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSCC--CCH--H-------------------H
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC--------eEEEEECCCC--cCH--H-------------------H
Confidence 4789999999999999999998888765443333 3455554421 111 0 0
Q ss_pred HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc--CCCeEEEeCCCCCC
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA--APNFLVLDEPTNHL 426 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~--~p~lLiLDEPTn~L 426 (443)
...+|+..+... .....+.. +-+.++++++. +|+++|+|+|++.+
T Consensus 106 a~~lG~~~~~l~-i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 106 AKKLGVDTDSLL-VSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHTTCCGGGCE-EECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHcCCCHHHeE-EecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 122333211110 00112332 33456776654 49999999999998
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.4e-05 Score=75.95 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=60.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGV 384 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl 384 (443)
.+.|+||+|+|||||++.+++...+..+ ..+.++.-... . +.. .-+..++..++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~~~--~----~~~------------~~~~~l~~~l~~ 100 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGFIY--R----NFT------------AIIGEIARSLNI 100 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETTTC--C----SHH------------HHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCccC--C----CHH------------HHHHHHHHHhCc
Confidence 7999999999999999999998776531 12333332110 0 111 111222233332
Q ss_pred ChhhhhccCCCCCHHHHHHHHHHHH-hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 385 SGDLALQFVGSLSGGQKSRVAFARM-CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 385 ~~~~~~~~~~~LSgGekqRl~lA~a-l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
. .+....+.++........+ -..+|.+|+|||+... |......|...+.++
T Consensus 101 ~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 101 P-----FPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEA 152 (389)
T ss_dssp C-----CCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCH
T ss_pred c-----CCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhC
Confidence 1 1112233333322211111 1345889999999876 999999988887653
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.9e-06 Score=74.23 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4688999999999999999999997654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.90 E-value=2.4e-05 Score=80.19 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=64.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
++.+++++|+|||||||++..|++.+.+..+.|.+ +.-+.. . ....+ ++..+-..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll--------v~~D~~---r--~~a~e------------qL~~~~~~ 150 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL--------VAADVY---R--PAAYD------------QLLQLGNQ 150 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE--------EEECCS---C--HHHHH------------HHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE--------EecCcc---c--hhHHH------------HHHHHHHh
Confidence 46789999999999999999999988876665433 332221 0 01111 12222233
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC-CC--CCHHHHHHHHHHH
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT-NH--LDIETIEALGKAI 438 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT-n~--LD~~s~~~l~~~L 438 (443)
.+++-. ......+.-.-.+-+++.+...+++++|+|+|. .+ .|......+...+
T Consensus 151 ~gv~~~---~~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 151 IGVQVY---GEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp TTCCEE---CCTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred cCCcee---eccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 343210 000111222223345666667799999999998 56 7887777776644
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.3e-05 Score=72.09 Aligned_cols=70 Identities=11% Similarity=0.164 Sum_probs=54.7
Q ss_pred hhccCCCCChHHHH------------------------------HHHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcE
Q psy208 133 QKRATKHFSGGWRK------------------------------MAIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDI 180 (443)
Q Consensus 133 ~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i 180 (443)
..+++..||||||+ .+..++.++|+++ ++++|+|||+...+ ..|++|
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEE
Confidence 35678999999998 4666777777543 46899999998765 689999
Q ss_pred EEE--eCCeeEEEcCChhHHHHHHH
Q psy208 181 FHL--HSQRIDTYRGNYEAFDKIKT 203 (443)
Q Consensus 181 ~~l--~~g~i~~~~G~y~~y~~~~~ 203 (443)
+.+ ++|...++..+++.+.+..+
T Consensus 137 ~~v~~~~g~s~~~~~~~~~~~~~~~ 161 (173)
T 3kta_B 137 IGVSMRDGVSKVVSLSLEKAMKILE 161 (173)
T ss_dssp EEEEEETTEEEEEECCHHHHHHHHH
T ss_pred EEEEecCCEEEEEEEEcHHHHHHHH
Confidence 865 57888888899888765544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.2e-06 Score=74.35 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=27.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~ 337 (443)
.+|++++|+|+||||||||+++|++.+ |.+.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~ 38 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLD 38 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEe
Confidence 468899999999999999999999865 555554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.87 E-value=2.8e-07 Score=90.21 Aligned_cols=26 Identities=38% Similarity=0.522 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.+++|+|+||||||||++.|+|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999974
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-06 Score=89.91 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=33.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-eEE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAG-TRT 335 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~ 335 (443)
.+.+|++++|+|+||||||||+++|+|.+.|++| .+.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~ 402 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVT 402 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEE
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEE
Confidence 5789999999999999999999999999999887 564
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.84 E-value=2.2e-05 Score=77.94 Aligned_cols=105 Identities=18% Similarity=0.090 Sum_probs=67.0
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCC
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKP 371 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~ 371 (443)
-|+.+.--+.+|+.+.|.|++|+|||||+..++..... .| ..+.|++-+. +..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~g-------~~Vl~fSlEm--------s~~ql~-------- 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-DD-------RGVAVFSLEM--------SAEQLA-------- 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-TT-------CEEEEEESSS--------CHHHHH--------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEeCCC--------CHHHHH--------
Confidence 44444446889999999999999999999888764332 12 2456655331 111110
Q ss_pred HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 372 QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 372 ~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
.++..... ++...... -+.||.++.+|+..|...+.+++++|.|+|+..
T Consensus 91 -~Rlls~~~--~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s 139 (338)
T 4a1f_A 91 -LRALSDLT--SINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR 139 (338)
T ss_dssp -HHHHHHHH--CCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC
T ss_pred -HHHHHHhh--CCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc
Confidence 01111112 22211111 147999999999999999999999999998644
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=7.2e-06 Score=75.00 Aligned_cols=31 Identities=29% Similarity=0.235 Sum_probs=27.7
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
-++.+|.+++|+|++|||||||+++|++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3567889999999999999999999999764
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.9e-06 Score=71.14 Aligned_cols=30 Identities=30% Similarity=0.507 Sum_probs=24.3
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999986
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.4e-06 Score=85.03 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=46.0
Q ss_pred EEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 278 ~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+.+++.+.|+ ...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|.+.+
T Consensus 32 e~~~~~~~~~-~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 32 ESRHPRHQAL-STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HCCCHHHHHH-HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCchhhhH-HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3344444553 346888889999999999999999999999999999988777776543
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=97.76 E-value=3.7e-06 Score=83.53 Aligned_cols=52 Identities=19% Similarity=0.272 Sum_probs=39.6
Q ss_pred hhhccCCCCChHHHH--------------------------------HHHHHHHHHhhh---CCCeEEEEecCHHHHhcc
Q psy208 132 MQKRATKHFSGGWRK--------------------------------MAIIWLENYLQN---WPTTLLVVSHDRHFLDSV 176 (443)
Q Consensus 132 ~~~~~~~~LSGGqr~--------------------------------~~i~wL~~~L~~---~~~tviiVSHDr~fLd~v 176 (443)
..++++.+||||||+ ..+.+|.++|++ .+.|||+||||.++ ..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh
Confidence 346889999999986 455556665543 34699999999775 578
Q ss_pred CCcEEEEe
Q psy208 177 PTDIFHLH 184 (443)
Q Consensus 177 ~~~i~~l~ 184 (443)
|++|+.|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=4.2e-06 Score=77.42 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=28.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC---CCCCceEEE
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII---SPTAGTRTV 336 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~---~p~~G~i~~ 336 (443)
+.+++|+|++||||||+.++|++.+ .+++|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 667777643
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.66 E-value=1.7e-05 Score=74.31 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=30.6
Q ss_pred eeeeeeEEEe---CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE
Q psy208 292 ILTNVCLGAT---LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335 (443)
Q Consensus 292 il~~vsl~i~---~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 335 (443)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3455555555 8999999999999999999999999887 55553
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=1.6e-05 Score=72.05 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=31.7
Q ss_pred EEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 283 NFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 283 ~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|++-..+++++|+..+++ +++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455665567899999988776 689999999999999999987
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.63 E-value=8.6e-05 Score=72.88 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=65.5
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGK 370 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~ 370 (443)
+-|+.+.--+.+|+.+.|.|+.|+|||||+..++...-- .| ..+.|+.-+. ... ....
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE~----s~~-~l~~--------- 113 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLEM----GKK-ENIK--------- 113 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESSS----CHH-HHHH---------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECCC----CHH-HHHH---------
Confidence 345555555889999999999999999998877643211 12 2456665331 100 0111
Q ss_pred CHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 371 PQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 371 ~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
++.... .++........-..||.++++|+..|...+.++++++.|+|+..
T Consensus 114 ---R~~~~~--~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 114 ---RLIVTA--GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp ---HHHHHH--TTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred ---HHHHHH--cCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 111111 12221111111012999999999999998889999999998643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.5e-05 Score=79.62 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
++.+++|+|++|||||||++.|+|.+.|..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 34579999999999999999999988877776644
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=67.22 Aligned_cols=29 Identities=41% Similarity=0.583 Sum_probs=24.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
+++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999988777664
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=2e-05 Score=70.28 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.+|.+++|+|++||||||++++|++.+++ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36889999999999999999999998765 45
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.57 E-value=7.9e-05 Score=73.28 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHh-CCCC---hhhhhccCCCCChHHHH------------------------------HHHHHHHHHhhhC
Q psy208 114 KAPARASVILAG-LGFT---PEMQKRATKHFSGGWRK------------------------------MAIIWLENYLQNW 159 (443)
Q Consensus 114 ~~~~rv~~~L~~-lgl~---~~~~~~~~~~LSGGqr~------------------------------~~i~wL~~~L~~~ 159 (443)
++..++..+|.. +++. +...++++.+||||||+ ....+|.++|+++
T Consensus 190 ~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~ 269 (322)
T 1e69_A 190 NIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (322)
T ss_dssp --------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred EeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 344445555553 3321 12246788999999998 5666777777654
Q ss_pred --CCeEEEEecCHHHHhccCCcE--EEEeCCeeEEEcCChhH
Q psy208 160 --PTTLLVVSHDRHFLDSVPTDI--FHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 160 --~~tviiVSHDr~fLd~v~~~i--~~l~~g~i~~~~G~y~~ 197 (443)
+.|||+||||.+ +..+||++ +.+++|...+...+.++
T Consensus 270 ~~~~~vi~~tH~~~-~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 270 SKHTQFIVITHNKI-VMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp TTTSEEEEECCCTT-GGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred cCCCeEEEEECCHH-HHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 569999999975 45689987 88888887776666544
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.55 E-value=1.5e-05 Score=83.62 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=31.6
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
..+++++|++.+| +.+|+|+|||||||||.+|..+
T Consensus 49 ~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred cceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 3678899999999 9999999999999999999665
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=4.6e-05 Score=69.98 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=23.9
Q ss_pred eeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 294 TNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 294 ~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+.++.+.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 489999999999999999884
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00021 Score=68.81 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=50.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
++..+.|.||+|+|||||++.|++.... .+-++.- . .+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~-----------~~~~i~~--~-~l~--------------------------- 91 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA-----------TFLNISA--A-SLT--------------------------- 91 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC-----------EEEEEES--T-TTS---------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC-----------CeEEeeH--H-HHh---------------------------
Confidence 4567999999999999999999985421 1111110 0 000
Q ss_pred CCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCCCC
Q psy208 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427 (443)
Q Consensus 382 ~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~LD 427 (443)
... .-+++++.+..+..+...+|.+|++||+.+-++
T Consensus 92 --------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 92 --------SKY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp --------SSS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSB
T ss_pred --------hcc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhcc
Confidence 000 124577778888888888999999999977654
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=5.8e-05 Score=68.73 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999983
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.43 E-value=2e-05 Score=83.38 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+-++++.+.|. ...++.++++++ +|..++|+||||+|||||+++|++.+.+..|.+..
T Consensus 84 ~G~~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~ 141 (543)
T 3m6a_A 84 HGLEKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL 141 (543)
T ss_dssp SSCHHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC
T ss_pred ccHHHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe
Confidence 44566666663 345778888888 89999999999999999999999999887777654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.41 E-value=5.9e-05 Score=68.49 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00038 Score=69.09 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=25.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-|++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999999988874
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00015 Score=65.01 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=20.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+++++++..+.. +++|+|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3778888887776 899999999999999999998
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.36 E-value=8.3e-05 Score=73.54 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
..+..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999998765543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.36 E-value=8.6e-05 Score=65.63 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|.+++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=3.1e-05 Score=71.14 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc--eEEE
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG--TRTV 336 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G--~i~~ 336 (443)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 44678899999999999999999999998887777 5544
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.35 E-value=5.7e-05 Score=77.28 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=42.1
Q ss_pred eeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 280 SEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 280 ~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+++++.|++. . ++++|+ +|.+++|+|+|||||||++..|++.+.+..|.|.+
T Consensus 80 ~~L~~~~~~~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 80 EALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHhCCC-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4566667432 2 677887 88999999999999999999999999988777654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=9e-05 Score=66.52 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.5
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++|+...+|.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=1.9e-05 Score=79.18 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
.+.+.|++..|+ .+.++++++|.| +|+|+||+|||||++.|.|...+..|
T Consensus 17 ~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 478899998885 567889999875 99999999999999999887655444
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.33 E-value=4.6e-05 Score=68.30 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=30.7
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
...+|.+++|+|++||||||+.+.|++.+.+..|.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345788999999999999999999999887766655
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=62.88 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.24 E-value=4.2e-05 Score=74.64 Aligned_cols=54 Identities=19% Similarity=0.103 Sum_probs=41.3
Q ss_pred EeeeEEEeCCCCceeee-eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 279 LSEVNFEYVPGKPILTN-VCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~-vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.+++...|++. . .+ ++|+.. |.+++++|+||+||||++..|++.+.+..|.+.+
T Consensus 77 ~~~l~~~~~~~-~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 77 YDELSNLFGGD-K--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHHHTTCS-C--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHhccc-c--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 34555556432 1 45 777766 8999999999999999999999998877666543
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00015 Score=73.48 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=30.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCceEEE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI-----------ISPTAGTRTV 336 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~ 336 (443)
.+..|.+++|+|+||+|||||++.|+|. +.|..|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v 66 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPV 66 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEEC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEE
Confidence 3457788999999999999999999998 5666777654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.22 E-value=9.9e-05 Score=77.08 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=44.3
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
..+++++...|. ...+++++++.+++| +.|+||||+|||||+++|++... .+.+.+
T Consensus 40 k~~l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i 95 (499)
T 2dhr_A 40 KEELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITA 95 (499)
T ss_dssp HHHHHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEE
Confidence 345566665563 456899999999999 99999999999999999999864 455544
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=64.41 Aligned_cols=25 Identities=44% Similarity=0.736 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|++|+|||||++.++|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00013 Score=66.63 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
...+|..++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456889999999999999999999988663
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00028 Score=72.40 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=27.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC------------CCCceEEEcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS------------PTAGTRTVHR 338 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~------------p~~G~i~~~~ 338 (443)
+++|+|+||||||||++.|+|... |.+|.+.+.+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 699999999999999999999864 5566666543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00073 Score=67.65 Aligned_cols=68 Identities=13% Similarity=0.197 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCCh---------------hhhhccCCCCChHHHH---------------------------------H
Q psy208 116 PARASVILAGLGFTP---------------EMQKRATKHFSGGWRK---------------------------------M 147 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~---------------~~~~~~~~~LSGGqr~---------------------------------~ 147 (443)
..++...+..++++. ...++++..|||||++ .
T Consensus 242 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~ 321 (371)
T 3auy_A 242 QKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDEN 321 (371)
T ss_dssp HHHHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHH
Confidence 345667788887654 0011678899999998 4
Q ss_pred HHHHHHHHhhhC--CCeEEEEecCHHHHhccCCcEEEEe
Q psy208 148 AIIWLENYLQNW--PTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 148 ~i~wL~~~L~~~--~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
...++.++|++. .++||+||||.+ +..+|++++.|+
T Consensus 322 ~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~~~~l~ 359 (371)
T 3auy_A 322 RRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSEEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCEEEEEE
Confidence 556777777654 359999999987 578999999997
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0012 Score=64.70 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=25.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00025 Score=66.16 Aligned_cols=121 Identities=13% Similarity=0.071 Sum_probs=59.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhc
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGG 381 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 381 (443)
.|+.++|+||+||||||++.++........|. . ..++++.+.+...+ .....+.+...+.... -..
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~--~~~~~l~~~p~~~l--a~q~~~~~~~~~~~~~-------~~~ 140 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---A--AECNIVVTQPRRIS--AVSVAERVAFERGEEP-------GKS 140 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---G--GGCEEEEEESSHHH--HHHHHHHHHHTTTCCT-------TSS
T ss_pred cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---C--CceEEEEeccchHH--HHHHHHHHHHHhcccc-------Cce
Confidence 57889999999999999888765322111121 0 11233333332111 1222233322211100 000
Q ss_pred CCCChhhh------hccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCC-CCCHHHHH-HHHHHH
Q psy208 382 FGVSGDLA------LQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN-HLDIETIE-ALGKAI 438 (443)
Q Consensus 382 ~gl~~~~~------~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn-~LD~~s~~-~l~~~L 438 (443)
.|...... +..+--.+.|.-.+.. ...+.+.+++|+||.-. ++|..... .+...+
T Consensus 141 ~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 141 CGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp EEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred EEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 11000000 0112234567666653 33688999999999965 57777663 334433
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00015 Score=72.57 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=31.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
-|.+|+++.|+||||||||||+..+++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.08 E-value=4.1e-05 Score=75.59 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=37.9
Q ss_pred CCceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 289 GKPILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 289 ~~~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
...+++.++..|..|+. +.+.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 45688889999999988 999999999999999999998765543
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=7.8e-05 Score=74.31 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=33.2
Q ss_pred ceeeeeeEEEeCCCE--EEEECCCCCcHHHHHHHHHcCC
Q psy208 291 PILTNVCLGATLESR--ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~--i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467888889999998 9999999999999999998854
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00027 Score=64.10 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00032 Score=62.06 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00035 Score=65.19 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999986
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00028 Score=62.76 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00038 Score=65.55 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=24.1
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
++++++.+.+| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 89999999999999999998764
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00074 Score=69.30 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.-+.|.||+|+|||||+++|++.+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999865
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00035 Score=62.62 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
.+++|+|++|||||||++.|.+.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 579999999999999999999876543
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00043 Score=71.51 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=57.8
Q ss_pred HHHHHHHhCCCChhhhhccCCCCChHHHH-----HH---------------------------HHHHHHHhhhCCCeEEE
Q psy208 118 RASVILAGLGFTPEMQKRATKHFSGGWRK-----MA---------------------------IIWLENYLQNWPTTLLV 165 (443)
Q Consensus 118 rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----~~---------------------------i~wL~~~L~~~~~tvii 165 (443)
++..++..+|+... .+ +.+||||||+ .+ ..+|.+.+++++.|+|+
T Consensus 217 ~~~~ll~~~gl~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tvii 293 (460)
T 2npi_A 217 NKQPMVKNFGLERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIML 293 (460)
T ss_dssp CBCCEECCCCSSSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhCCCcc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEE
Confidence 45556777888753 23 7899999998 11 34567777778899999
Q ss_pred EecCHH------HHhccCCc-----EEEEe-CCeeEEEcCChhH
Q psy208 166 VSHDRH------FLDSVPTD-----IFHLH-SQRIDTYRGNYEA 197 (443)
Q Consensus 166 VSHDr~------fLd~v~~~-----i~~l~-~g~i~~~~G~y~~ 197 (443)
|+||.. ++..+||+ |+.|+ +|++. .|+...
T Consensus 294 Vth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 294 VLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp EECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred EEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 999987 77899999 99999 89986 677543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0031 Score=64.69 Aligned_cols=37 Identities=19% Similarity=0.004 Sum_probs=30.6
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-|+.+.--+.+|+.+.|.|++|+|||||+..++...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566665558899999999999999999998887654
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00065 Score=60.95 Aligned_cols=32 Identities=0% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhCCCeEEEEe---cCHHHHhccCCc
Q psy208 148 AIIWLENYLQNWPTTLLVVS---HDRHFLDSVPTD 179 (443)
Q Consensus 148 ~i~wL~~~L~~~~~tviiVS---HDr~fLd~v~~~ 179 (443)
...++.+.|++.+.|+|++| ||+.|++.+|++
T Consensus 118 ~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 118 FRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 34578888877777788888 599999999997
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00076 Score=58.85 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00036 Score=75.43 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCceE
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGIISP--TAGTR 334 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p--~~G~i 334 (443)
|+.+.+|.+++|+|+||+|||||++.|++...+ ..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999976654 45654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00056 Score=68.84 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56679999999999999999999887777777654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00034 Score=66.15 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=25.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
...++.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445677899999999999999999998764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00052 Score=64.47 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHH---cCCCCCCceE
Q psy208 303 ESRICIVGDNGAGKTTLLKIIM---GIISPTAGTR 334 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~---G~~~p~~G~i 334 (443)
.-+++|+||+||||||+.+.|+ |....+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5444455543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=58.59 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|-+++|.|+.||||||+.+.|+-.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0013 Score=57.89 Aligned_cols=27 Identities=19% Similarity=0.439 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.|..+.|+|+.||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999997653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=64.69 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc-----------CCCCCCceEEEc
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMG-----------IISPTAGTRTVH 337 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G-----------~~~p~~G~i~~~ 337 (443)
|-+++|+|.+|+|||||++.|+| .+.|..|.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~ 47 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecC
Confidence 45799999999999999999998 345666766553
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=60.69 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHc
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
+-+++|+|++||||||+.++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0011 Score=58.53 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=57.21 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l 323 (443)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.01 Score=60.84 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
++.+++++|++||||||++..|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999876654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=58.96 Aligned_cols=22 Identities=41% Similarity=0.539 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=63.05 Aligned_cols=24 Identities=29% Similarity=0.653 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0013 Score=62.16 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998754
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.00037 Score=63.40 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+++|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=58.80 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++.++.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999997643
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0021 Score=57.77 Aligned_cols=26 Identities=35% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0018 Score=56.79 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0012 Score=58.50 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
..+..+.|+|+.||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999843
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0018 Score=58.61 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0024 Score=63.75 Aligned_cols=58 Identities=10% Similarity=0.020 Sum_probs=47.3
Q ss_pred hccCC-CCChHHHH-----------------------------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccC
Q psy208 134 KRATK-HFSGGWRK-----------------------------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVP 177 (443)
Q Consensus 134 ~~~~~-~LSGGqr~-----------------------------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~ 177 (443)
++++. .||||||+ .....|.+.|++...|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46787 89999998 56778888887777899999995 33 89
Q ss_pred CcEEEEeCCeeEEEcCChh
Q psy208 178 TDIFHLHSQRIDTYRGNYE 196 (443)
Q Consensus 178 ~~i~~l~~g~i~~~~G~y~ 196 (443)
++|++|++|++.. .|+.+
T Consensus 335 ~~i~~l~~G~i~~-~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEE 352 (359)
T ss_dssp SEEEEEETTEEEE-CCCTT
T ss_pred CEEEEEECCEEEe-cCCHH
Confidence 9999999999964 56654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0022 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+..++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999997543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0019 Score=58.05 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999975
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0023 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.++-+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999854
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0028 Score=56.23 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=22.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
=+++|+|+.|||||||++.|++...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0035 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998865
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=56.82 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+-+|+|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0033 Score=53.98 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=57.62 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+|-+|+|.|+.||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4668999999999999999999875543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0031 Score=60.40 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0025 Score=57.62 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=23.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+|-+++|+|+.||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0017 Score=62.97 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=26.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+.+.++..+.|.||+|+|||||+++|++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456788899999999999999999998753
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=57.44 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=56.86 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999863
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0029 Score=54.78 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0023 Score=55.06 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.++|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999988653
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=53.96 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0032 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.671 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+++...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 589999999999999999987543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.003 Score=57.24 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+|-+|+|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0022 Score=56.59 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=18.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0043 Score=53.34 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0055 Score=54.37 Aligned_cols=28 Identities=32% Similarity=0.583 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc-C----CCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG-I----ISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G-~----~~p~~G 332 (443)
+++|+|+.|+|||||++.+++ . ..|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 589999999999999975554 3 456655
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0025 Score=61.52 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|..+.|+||+||||||+.+.|+..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998654
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0029 Score=56.07 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0033 Score=55.51 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|+.|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999987643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0038 Score=53.17 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0043 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0043 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998753
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0042 Score=53.28 Aligned_cols=23 Identities=13% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.003 Score=54.92 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0044 Score=52.91 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999988643
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0044 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999988754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0044 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0013 Score=58.93 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.++-+++|+|+.||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4467789999999999999999998643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0021 Score=61.80 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
..+.|+||+|+|||||.++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 3689999999999999999999887766643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0035 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
-+++|+|++|||||||+..|+..+.+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 36899999999999999999887653
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0041 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0041 Score=54.69 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0074 Score=51.79 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0021 Score=56.28 Aligned_cols=22 Identities=50% Similarity=0.593 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
=+++|+|++|+|||||++.+.+
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999985
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.016 Score=59.35 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=27.2
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
-|+.+.--+.+|+.+.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4444443588999999999999999999877664
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0048 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=56.82 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0033 Score=55.71 Aligned_cols=24 Identities=17% Similarity=0.469 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999864
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0034 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 79999999999999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0063 Score=52.85 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.-+++|+|+.|+|||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44579999999999999999998753
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0036 Score=54.38 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999876
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0054 Score=53.75 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=53.30 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0042 Score=57.28 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++-+++|+|+.||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999998543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0042 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998853
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0044 Score=53.41 Aligned_cols=22 Identities=50% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0047 Score=53.69 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0045 Score=53.03 Aligned_cols=22 Identities=45% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999763
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0045 Score=56.41 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0059 Score=53.94 Aligned_cols=23 Identities=13% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.005 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0047 Score=54.78 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0061 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0056 Score=55.17 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+-+|+|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0044 Score=54.12 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0057 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0066 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0067 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 58999999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.005 Score=54.37 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0049 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0053 Score=53.46 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0068 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0062 Score=53.69 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0063 Score=53.34 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.004 Score=55.88 Aligned_cols=22 Identities=36% Similarity=0.754 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999764
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=56.59 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999997543
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.007 Score=53.54 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998854
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.005 Score=55.41 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
..+.|.||+|+|||||++.|+.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999986644
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0075 Score=52.50 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0052 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+|+|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0056 Score=54.82 Aligned_cols=22 Identities=41% Similarity=0.936 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.++|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999873
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0063 Score=55.59 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5778999999999999999999876543
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0052 Score=58.19 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|||||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.006 Score=54.90 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+|+|+|+.||||||+.+.|+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999854
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.007 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++++|+|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999763
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0061 Score=53.62 Aligned_cols=25 Identities=44% Similarity=0.547 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.=+++|+|+.|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0064 Score=57.92 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
-+++|+|.+|+|||||++.|.|...+..|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 57999999999999999999997654444
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0082 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0065 Score=54.31 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|+.|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5999999999999999999996543
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0065 Score=55.99 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0062 Score=57.62 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++..|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3557999999999999999999864
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.008 Score=54.42 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.|++...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998653
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0063 Score=59.10 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|++|+|||||++.|.|..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0049 Score=61.72 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0084 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0088 Score=52.20 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0089 Score=52.83 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.007 Score=54.89 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+++|+|+.||||||+.+.|+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0083 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.699 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0081 Score=53.81 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 58999999999999999998864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0085 Score=53.09 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999999874
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0064 Score=53.94 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+.+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 589999999999999999987553
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0066 Score=57.02 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.|||||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0066 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0084 Score=54.22 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999887643
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0076 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0094 Score=52.89 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0087 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999984
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0074 Score=53.53 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0074 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0071 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0055 Score=54.28 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0063 Score=57.98 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+|+.|+|||||++.|.|..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.01 Score=52.37 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0077 Score=56.55 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.||||||+.+.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999997743
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0075 Score=53.23 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999964
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0042 Score=56.47 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+++|+|+.|+|||||++.|+|..
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999875
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0096 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998654
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0075 Score=53.46 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+++.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0062 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0075 Score=55.01 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0083 Score=53.43 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0076 Score=57.56 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|||||||++.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.011 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0084 Score=53.60 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998764
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.011 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.007 Score=53.20 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=53.81 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.01 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.012 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+++...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999987543
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0086 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+++..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998863
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0097 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999997643
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0089 Score=58.11 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-.++|+|+.|+|||||++.|.|..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 369999999999999999999964
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0098 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998653
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0088 Score=56.00 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++-+++|+|+.||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0099 Score=54.42 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999997643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.013 Score=52.64 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0086 Score=57.45 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
-+|+|+|+.||||||+.+.|+.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999984
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.011 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999999854
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0099 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999998887643
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.0093 Score=54.18 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=95.20 E-value=0.012 Score=52.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.009 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=54.15 Aligned_cols=22 Identities=41% Similarity=0.936 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999999974
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0068 Score=53.05 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=54.05 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.|++..
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988753
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=55.47 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=21.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+|-.|+|.|+.||||||+++.|+..+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999986653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.01 Score=61.09 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=32.8
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
.+++.+ +.+-+|++++|+|++|+|||||++.|+.......+.
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 355555 577899999999999999999999998765443343
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.014 Score=50.87 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+..+.|+||.|+|||||++.++..+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998754
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.0066 Score=58.67 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=18.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-+|+|.|+.||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998643
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0098 Score=53.04 Aligned_cols=24 Identities=42% Similarity=0.371 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC
Confidence 369999999999999999997643
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.022 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.9
Q ss_pred ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 291 PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 291 ~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
..++...+.+ .|.-++|+|++|+|||||...|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3556666666 677899999999999999998887
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.015 Score=51.46 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|..|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=55.57 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999865
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.013 Score=53.99 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+|-.|+|.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999976554
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.015 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+-+++|+|+.||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=55.75 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++++|+.|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.005 Score=60.17 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=26.5
Q ss_pred eeeeeeEEEeCC--CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 292 ILTNVCLGATLE--SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 292 il~~vsl~i~~G--e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++.+.-.+..| ..+.|.||+|+|||||++.|++.+.
T Consensus 45 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 45 AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 333333334444 3489999999999999999998753
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=56.07 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=57.21 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+..+.|.||+|+|||||++.|++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 4568999999999999999999876443
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.0061 Score=55.21 Aligned_cols=23 Identities=39% Similarity=0.834 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|++..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998654
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.015 Score=54.58 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999977653
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.014 Score=53.08 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998743
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.014 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++.-+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455679999999999999999999865
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.016 Score=53.33 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.018 Score=51.86 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.018 Score=51.98 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+.|.||.|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987543
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.0098 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
=+++|+|+.|+|||||++.+.+-
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999653
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.016 Score=57.32 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+||+|||||||.+.|+..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 689999999999999999987653
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=94.69 E-value=0.0072 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=4.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999998876
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.021 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.021 Score=51.84 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999998875
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.015 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++-++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999998888654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.014 Score=59.97 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|++|+|||||++.|+|.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999984
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.021 Score=51.37 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=53.72 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|-.|+|.|..||||||+++.|+..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 5579999999999999999998765
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=50.29 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+..+.|+||.|+|||||++.++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999987653
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=94.47 E-value=0.02 Score=58.14 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.....+.|+|++||||||+.+.|+..
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999999764
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.02 Score=56.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++|+||+|||||||.+.|+..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999765
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.0057 Score=57.60 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=24.7
Q ss_pred eeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 293 LTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 293 l~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+.++.+....| +.|.||.|+|||||++.|+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 34444444555 889999999999999999874
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.022 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.338 Sum_probs=25.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.+|-.|+|.|+.||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 36889999999999999999999887765
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.021 Score=53.05 Aligned_cols=27 Identities=30% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|-.|+|.|+.||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 577899999999999999999986553
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.025 Score=55.86 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
++..++|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 345799999999999999999997653
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.025 Score=54.38 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+++|+|..|+|||||++.|.|....
T Consensus 122 ~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 122 RALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred eEEEEecCCCchHHHHHHHhcCcee
Confidence 6899999999999999999997643
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+..++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3478999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 443 | ||||
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-23 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-22 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-20 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-20 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-20 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-20 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-20 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-19 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-17 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 6e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-16 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 4e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 9e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-06 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-06 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 6e-05 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 2e-04 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 0.001 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 0.003 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 0.004 |
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (254), Expect = 4e-25
Identities = 40/191 (20%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 257 EKEVEVVLKFPDTELLSPPILQLSEVNFEYV--PGKPILTNVCLGATLESRICIVGDNGA 314
E E++ K + + V+F ++ G P+L N+ L + I G G+
Sbjct: 14 EGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGS 73
Query: 315 GKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEE 374
GKT+LL +I+G + + G + + + + SQ + ++ + ++ +
Sbjct: 74 GKTSLLMLILGELEASEG--IIKHSGRVSFCSQFSWI-MPGTIKENIIFGVSYDEYRYKS 130
Query: 375 YRRQLGGFGVSGDLALQF-------VGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
+ A Q +LSGGQ++R++ AR + +LD P +LD
Sbjct: 131 VVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD 190
Query: 428 IETIEALGKAI 438
+ T E + ++
Sbjct: 191 VFTEEQVFESC 201
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 93.8 bits (233), Expect = 6e-23
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 12/173 (6%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA---- 331
L++ +++ Y KP+L + + + + G NG GKTTLLK I + P
Sbjct: 2 KLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 332 --GTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKP--QEEYRRQLGGFGVSGD 387
G K + + + +++ A+ G + E L V
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 388 LALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ +G LS G RV A + VLD+P +D ++ + K+I +
Sbjct: 120 K--KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 91.5 bits (227), Expect = 9e-22
Identities = 45/190 (23%), Positives = 70/190 (36%), Gaps = 43/190 (22%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+L V+F Y + IL ++ A S I G +G GK+T+ ++ PTAG
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 334 -----------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
T+ NL +G + + L L
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
F ++ ++G GV +SGGQ+ R+A AR + P L+LDE T
Sbjct: 121 --FVENMPDQLNTEVGERGV----------KISGGQRQRLAIARAFLRNPKILMLDEATA 168
Query: 425 HLDIETIEAL 434
LD E+ +
Sbjct: 169 SLDSESESMV 178
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 88.1 bits (218), Expect = 2e-20
Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 15/166 (9%)
Query: 289 GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV----------HR 338
K IL + ++G NGAGKTT L+II +I P++G TV
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEV 73
Query: 339 NLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYR----RQLGGFGVSGDLALQFVG 394
Y + +M A F E R G+ G+ V
Sbjct: 74 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL-GEKIKDRVS 132
Query: 395 SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ S G ++ AR M P +LDEPT+ LD+ + K + +
Sbjct: 133 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQ 178
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.2 bits (216), Expect = 2e-20
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++L V Y G+ L NV L + I+G +G+GK+T+L II + PT G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 333 T---------------RTVHRNLKFGYFSQHHVDQLDMNLR---CVQLLEAAFPGKPQEE 374
T R K G+ Q + + L+ EE
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 375 YRRQL----GGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIET 430
R++ + A LSGGQ+ RVA AR P ++ D+PT LD +T
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 431 IEALGKAINK 440
E + + + K
Sbjct: 181 GEKIMQLLKK 190
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 87.5 bits (217), Expect = 2e-20
Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 19/179 (10%)
Query: 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336
++L + + + + L + ++G +G GKTT L++I G+ PT G
Sbjct: 7 VKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 65
Query: 337 H---------RNLKFGYFSQHHVDQLDMNLRCVQLLE--AAFPGKPQEEYRRQ----LGG 381
++ Q + + ++ + + P++E ++
Sbjct: 66 GDRDVTYLPPKDRNISMVFQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAEL 123
Query: 382 FGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440
+ +L ++ LSGGQ+ RVA AR + P+ L++DEP ++LD + A+ I K
Sbjct: 124 LQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 181
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 87.3 bits (216), Expect = 3e-20
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 18/184 (9%)
Query: 273 SPPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
S +L++ ++ Y + + L + ++G NGAGKTT L I G++ G
Sbjct: 3 SDIVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61
Query: 333 T------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ-- 378
V + + ++ + L+ A+ K +E +R
Sbjct: 62 KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVY-ENLMMGAYNRKDKEGIKRDLE 120
Query: 379 --LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGK 436
F + Q G+LSGG++ +A R M+ P L++DEP+ L + + +
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFE 180
Query: 437 AINK 440
I K
Sbjct: 181 VIQK 184
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 87.5 bits (217), Expect = 3e-20
Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 45/196 (22%)
Query: 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
+ + V+F+Y PIL ++ L + VG +G GK+TL+ +I T+G
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 334 -----------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
TV N+ G +++ + +
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG-RPTATDEEVVEAAKMANAHD 135
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
F + Y ++G GV LSGGQK R++ AR+ + P L+LDE T+
Sbjct: 136 --FIMNLPQGYDTEVGERGV----------KLSGGQKQRLSIARIFLNNPPILILDEATS 183
Query: 425 HLDIETIEALGKAINK 440
LD+E+ + +A++
Sbjct: 184 ALDLESESIIQEALDV 199
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 85.7 bits (212), Expect = 1e-19
Identities = 45/196 (22%), Positives = 74/196 (37%), Gaps = 44/196 (22%)
Query: 277 LQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT-- 333
L+ V F Y P L N+ L + +VG +G+GK+T+ +I G
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 334 -----------------------------RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
TV N+ + ++ +Q++ R ++
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
F K +G GV LSGGQ+ R+A AR + L+LDE T+
Sbjct: 134 --FINKMDNGLDTIIGENGV----------LLSGGQRQRIAIARALLRDSPILILDEATS 181
Query: 425 HLDIETIEALGKAINK 440
LD E+ A+ A+++
Sbjct: 182 ALDTESERAIQAALDE 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 84.3 bits (208), Expect = 4e-19
Identities = 37/193 (19%), Positives = 59/193 (30%), Gaps = 29/193 (15%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
IL+ + + L V + I+G NG+GK+TL+ +I G + G
Sbjct: 4 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 336 VH------------RNLKFGYFSQHHVDQLDMN----------LRCVQLLEAAFPGKP-- 371
+ Q +M L + F K
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 372 ----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLD 427
E ++ F L + G LSGGQ V R M P +V+DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 182
Query: 428 IETIEALGKAINK 440
+ + +
Sbjct: 183 PGLAHDIFNHVLE 195
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 82.6 bits (204), Expect = 2e-18
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 30/188 (15%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
L + +++ Y G +L V L A I I+G +G+GK+T L+ I + P+ G
Sbjct: 2 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 336 VH------------------------RNLKFGYFSQHHVDQLDMN-LRCVQLLEAAFPGK 370
V+ + QH M L V G
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 371 PQEEYRRQ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHL 426
+ + R + L G+ ++ LSGGQ+ RV+ AR P+ L+ DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 427 DIETIEAL 434
D E + +
Sbjct: 181 DPELVGEV 188
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 1e-17
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 19/182 (10%)
Query: 278 QLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGT--- 333
+ F Y P IL N+ L I IVG +G+GK+TL K+I P G
Sbjct: 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 62
Query: 334 -----RTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL 388
N D + +N + + A PG E+ G +
Sbjct: 63 DGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFI 122
Query: 389 ALQFVG----------SLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438
+ G LSGGQ+ R+A AR + P L+ DE T+ LD E+ + + +
Sbjct: 123 SELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNM 182
Query: 439 NK 440
+K
Sbjct: 183 HK 184
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (190), Expect = 6e-17
Identities = 44/185 (23%), Positives = 67/185 (36%), Gaps = 30/185 (16%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLES--RICIVGDNGAGKTTLLKIIMGIISPTAGT 333
++QL +V L + + + + +VG NGAGK+TLL + G+ G+
Sbjct: 3 VMQLQDVAE-----STRLGPLSG--EVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS 54
Query: 334 RTVH-----------RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGF 382
L Y SQ + L K + E + G
Sbjct: 55 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW--HYLTLHQHDKTRTELLNDVAGA 112
Query: 383 GVSGDLALQFVGSLSGGQKSRVAFARMCMA-------APNFLVLDEPTNHLDIETIEALG 435
D + LSGG+ RV A + + A L+LDEP N LD+ AL
Sbjct: 113 LALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALD 172
Query: 436 KAINK 440
K ++
Sbjct: 173 KILSA 177
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (187), Expect = 2e-16
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAG 332
+++LS + + G L NV L ++G +GAGK+TL++ + + PT G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 333 TRTVH-RNL-------------KFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378
+ V + L + G QH + L P++E +R+
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 379 ----LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L G+ GD + +LSGGQK RVA AR + P L+ DE T+ LD T ++
Sbjct: 121 VTELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 75.8 bits (186), Expect = 2e-16
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 13/169 (7%)
Query: 278 QLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH 337
QL V + + ++ L + VG +G GK+TLL++I G+ + T+G +
Sbjct: 2 QLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 338 ---------RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRR---QLGGFGVS 385
G Q + +++ G +E + Q+
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 386 GDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L + +LSGGQ+ RVA R +A P+ +LDEP ++LD +
Sbjct: 121 AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 169
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 76.1 bits (187), Expect = 2e-16
Identities = 37/178 (20%), Positives = 72/178 (40%), Gaps = 21/178 (11%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
++L +V + + + L + ++G +G GKTT L++I G+ P+ G
Sbjct: 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 336 V----HRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFP-----------GKPQEEYRRQ-- 378
+ + + G F + M + L P++E ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 379 --LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
G++ +L + LSGGQ+ RVA R + P ++DEP ++LD + +
Sbjct: 122 EVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.9 bits (184), Expect = 6e-16
Identities = 36/185 (19%), Positives = 66/185 (35%), Gaps = 21/185 (11%)
Query: 277 LQLSEVNFEY--VPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTR 334
+Q +V+F Y P +L + +VG NG+GK+T+ ++ + PT G
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 335 TV-----------HRNLKFGYFSQHHV---DQLDMNLRCVQLLEAAFPGKPQEEYRRQLG 380
+ + + + Q L N+ + +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 381 GF-----GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALG 435
F + LSGGQ+ VA AR + P L+LD+ T+ LD + +
Sbjct: 132 SFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVE 191
Query: 436 KAINK 440
+ + +
Sbjct: 192 QLLYE 196
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.4 bits (177), Expect = 4e-15
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 18/176 (10%)
Query: 277 LQLSEVNFEYVPGK-PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
+ + V+ + GK L NV + R I+G +GAGKTT ++II G+ P+ G
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 336 VH--------------RNLKFGYFSQHHVDQLDMNLR---CVQLLEAAFPGKPQEEYRRQ 378
+ K G Q ++ L + + +
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
+ + F LSG Q+ RVA AR + P+ L+LDEP ++LD ++
Sbjct: 124 VAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 4e-15
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 14/141 (9%)
Query: 306 ICIVGDNGAGKTTLLKIIMGIISPTAGTRTVH---------RNLKFGYFSQHHVDQLDMN 356
++G GAGK+ L++I GI+ P G ++ G+ Q + L +
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDY--ALFPH 84
Query: 357 LRCVQLLEAAFPGKPQEEYR---RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAA 413
L + + + E R++ L + LSGG++ RVA AR +
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQ 144
Query: 414 PNFLVLDEPTNHLDIETIEAL 434
P L+LDEP + +D++T L
Sbjct: 145 PRLLLLDEPLSAVDLKTKGVL 165
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 9e-15
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 11/168 (6%)
Query: 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335
++++ ++ ++ L N+ L I+G GAGKT L++I G P +G
Sbjct: 1 MIEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 336 VH---------RNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG 386
+ + Q++ MN++ +
Sbjct: 59 LDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE 118
Query: 387 DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEAL 434
L + +LSGG++ RVA AR + P L+LDEP + LD T E
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 65.0 bits (157), Expect = 5e-13
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 11/122 (9%)
Query: 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLE 364
+I I G+ G GKTTL+K I+ + A + + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSS 61
Query: 365 AAFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTN 424
F K A+ +++DE
Sbjct: 62 KFFTSKKLVGSYG-----------VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGK 110
Query: 425 HL 426
Sbjct: 111 ME 112
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.2 bits (95), Expect = 6e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 305 RICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLKFGYFSQHHVDQ 352
++ +G + AGKTTLL ++ + PT + + F+ +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGG 53
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRC 359
E ++ ++G +GK+T++K + I G H K +F V +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKK 58
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (87), Expect = 0.001
Identities = 8/38 (21%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 305 RICIVGDNGAGKTTLLK-IIMGIISPTAGTRTVHRNLK 341
R+ ++G +GK+T++K + + + T+G +
Sbjct: 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVD 45
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.003
Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 301 TLESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLKFGYFSQHHVDQLDMN 356
T E RI I+G +GAGKTT+L + PT G K F + L
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 357 LRC 359
Sbjct: 63 RPY 65
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 35.8 bits (81), Expect = 0.004
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 303 ESRICIVGDNGAGKTTLLKIIMG----IISPTAGTRTVHRNLKFGYFSQHH 349
E R+ ++G + AGKTT+LK G ISPT G + +
Sbjct: 2 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWD 52
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.58 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.56 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.55 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.53 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.53 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.53 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.5 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.5 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.49 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.48 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.47 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.44 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.4 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.34 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.24 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.2 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.17 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.13 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.11 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.06 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.05 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.59 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 98.48 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.22 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.96 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.83 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.65 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.61 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.58 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.31 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.29 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.19 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.13 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.12 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.1 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.06 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.03 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.02 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.91 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.89 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.86 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.77 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.76 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.73 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.72 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.71 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.7 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.69 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.64 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.55 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.53 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.53 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.51 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.5 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.5 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.48 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.46 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.46 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.45 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.42 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.42 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.4 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.4 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.34 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.3 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.29 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.28 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.28 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.25 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.24 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.23 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.2 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.17 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.16 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.13 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.12 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.11 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.09 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.08 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.07 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.06 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.01 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.98 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.97 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.94 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.94 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.93 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.91 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.9 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.88 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.87 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.84 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.83 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.78 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.77 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.76 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.76 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 95.74 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.73 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.72 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.7 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.68 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.66 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.66 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.65 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.59 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.57 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.56 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.53 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.52 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.45 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.45 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.44 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.42 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.38 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.36 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.35 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 95.35 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.33 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.33 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.3 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 95.28 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 95.27 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.27 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.25 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.24 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.23 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 95.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.18 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.16 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 95.11 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.11 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 95.1 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.06 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.05 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.94 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.93 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.93 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.91 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.87 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.85 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.8 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.76 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 94.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.68 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.63 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.63 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.63 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.6 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.59 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.57 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 94.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.47 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.45 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.39 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.37 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 94.35 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.33 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.31 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.28 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 94.27 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 94.27 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 94.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.16 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.15 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.12 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.1 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.05 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.04 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.96 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.77 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.57 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 93.56 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.49 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.42 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.34 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 93.27 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.09 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.06 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.01 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.97 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 92.9 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.73 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.7 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.5 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.32 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.21 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 92.2 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.09 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.62 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.21 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.0 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.81 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 90.78 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.59 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.57 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 90.36 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.35 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.19 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.11 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.8 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.76 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.65 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.24 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.21 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.91 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.7 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.48 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 87.77 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.57 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 87.54 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 86.83 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.82 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.81 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 86.58 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.01 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.84 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.2 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.82 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.83 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 82.57 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.61 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 81.53 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 81.21 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.12 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 80.83 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.5e-41 Score=314.80 Aligned_cols=164 Identities=29% Similarity=0.371 Sum_probs=140.9
Q ss_pred eEEEeeeEEEeCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~---~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+|+|+.+. .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 589999999996432 4799999999999999999999999999999999999999999998642
Q ss_pred --eEEEEeccCcccccccchhHHHHHHH--hC---CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHH
Q psy208 340 --LKFGYFSQHHVDQLDMNLRCVQLLEA--AF---PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFAR 408 (443)
Q Consensus 340 --~~ig~~~Q~~~~~l~~~~~~~~~~~~--~~---~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~ 408 (443)
.++||++|++ .+.+..++.+++.. .+ .... .+.+.+.|+.+++.....+++|.+|||||||||+|||
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHh
Confidence 2499999986 46667788877643 11 1222 2356788999999766678999999999999999999
Q ss_pred HhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 409 MCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 409 al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||+.+|++|||||||++||+.++..+.+.|.++
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l 191 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKL 191 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.1e-41 Score=316.26 Aligned_cols=163 Identities=23% Similarity=0.340 Sum_probs=138.6
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEe
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYF 345 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~ 345 (443)
..|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+. .++||+
T Consensus 5 ~~I~v~nlsk~yg-~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v 83 (239)
T d1v43a3 5 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 83 (239)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred CeEEEEEEEEEEC-CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEE
Confidence 3489999999995 678999999999999999999999999999999999999999999998642 359999
Q ss_pred ccCcccccccchhHHHHHHHhC--CCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEE
Q psy208 346 SQHHVDQLDMNLRCVQLLEAAF--PGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVL 419 (443)
Q Consensus 346 ~Q~~~~~l~~~~~~~~~~~~~~--~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiL 419 (443)
||++ .+.+..++.+++.... .+.+ .+.+..+|+.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 84 ~Q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLll 160 (239)
T d1v43a3 84 FQSY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLM 160 (239)
T ss_dssp EC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eech--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHhhhccCCCceee
Confidence 9986 4667788888875322 1223 24567789999996 688999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHccc
Q psy208 420 DEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 420 DEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||++||+.++..+.+.|.++
T Consensus 161 DEPts~LD~~~~~~i~~ll~~l 182 (239)
T d1v43a3 161 DEPLSNLDAKLRVAMRAEIKKL 182 (239)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.1e-41 Score=318.32 Aligned_cols=161 Identities=25% Similarity=0.343 Sum_probs=112.1
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEecc
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFSQ 347 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~Q 347 (443)
|+++||+|+|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+++ ..++||+||
T Consensus 1 Iev~nv~k~yg-~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 79 (232)
T d2awna2 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECS
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeecc
Confidence 68999999995 67899999999999999999999999999999999999999999999864 235999999
Q ss_pred CcccccccchhHHHHHHHh--CCC----CCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeC
Q psy208 348 HHVDQLDMNLRCVQLLEAA--FPG----KPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDE 421 (443)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~~--~~~----~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDE 421 (443)
++ .+.+..++.+++... ..+ ...+.+.++|+.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDE 156 (232)
T d2awna2 80 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 156 (232)
T ss_dssp SC--CC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEES
T ss_pred cc--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 96 466677877776422 111 1235678899999996 67899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHccc
Q psy208 422 PTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 422 PTn~LD~~s~~~l~~~L~~~ 441 (443)
||++||+.++..+.+.|.++
T Consensus 157 Pts~LD~~~~~~i~~~l~~l 176 (232)
T d2awna2 157 PLSNLDAALRVQMRIEISRL 176 (232)
T ss_dssp TTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=5e-41 Score=317.27 Aligned_cols=162 Identities=22% Similarity=0.333 Sum_probs=141.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------------ce
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------------~~ 340 (443)
.|+++||+|+|+ +.++++||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+ +.
T Consensus 3 ~i~v~nl~k~yg-~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred cEEEEeEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 589999999995 67899999999999999999999999999999999999999999998854 13
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++||++|++ .+.+..|+.+++... ..+.+ .+.+.++++.+++. +..+++|++|||||||||+|||||+.+|
T Consensus 82 ~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P 158 (240)
T d1g2912 82 DIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (240)
T ss_dssp SEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred cceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 599999996 466777888876431 12222 24577899999996 6789999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|.++
T Consensus 159 ~iLllDEPt~~LD~~~~~~i~~~l~~l 185 (240)
T d1g2912 159 QVFLMDEPLSNLDAKLRVRMRAELKKL 185 (240)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred CEEEecCCCcccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8.5e-41 Score=313.33 Aligned_cols=161 Identities=25% Similarity=0.337 Sum_probs=141.7
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc---------eEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------LKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------~~ig~~~ 346 (443)
+|+++||+++|+ + .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++. ..+||++
T Consensus 1 mi~v~nlsk~y~-~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~ 78 (229)
T d3d31a2 1 MIEIESLSRKWK-N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVY 78 (229)
T ss_dssp CEEEEEEEEECS-S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEEC
T ss_pred CEEEEEEEEEeC-C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeec
Confidence 589999999995 3 5899999999999999999999999999999999999999999998642 2599999
Q ss_pred cCcccccccchhHHHHHHH---hCCCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC
Q psy208 347 QHHVDQLDMNLRCVQLLEA---AFPGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT 423 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT 423 (443)
|++ .+.+..++.+++.. .......+++.+++..+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 79 Q~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPt 155 (229)
T d3d31a2 79 QNY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPL 155 (229)
T ss_dssp TTC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSS
T ss_pred ccc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCC
Confidence 986 46667788877642 12223567889999999996 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHccc
Q psy208 424 NHLDIETIEALGKAINKY 441 (443)
Q Consensus 424 n~LD~~s~~~l~~~L~~~ 441 (443)
++||+.++..+.+.|++.
T Consensus 156 s~LD~~~~~~i~~~l~~l 173 (229)
T d3d31a2 156 SALDPRTQENAREMLSVL 173 (229)
T ss_dssp TTSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999998764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-40 Score=313.26 Aligned_cols=163 Identities=28% Similarity=0.399 Sum_probs=141.2
Q ss_pred eEEEeeeEEEeCCCC---ceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-------------
Q psy208 276 ILQLSEVNFEYVPGK---PILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~---~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------- 339 (443)
+|+++||+++|+.+. .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 589999999997542 5899999999999999999999999999999999999999999998642
Q ss_pred -eEEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 340 -LKFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 340 -~~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
.++||+||++ .+.+..++.+++... ..+.+ .+.+.++|..+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred hcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhcc
Confidence 2499999986 356677888876531 12222 35678899999996 67899999999999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|++|||||||++||+.++..+.+.|++.
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l 186 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDI 186 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred CCCeEEeccccccCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999999764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.3e-40 Score=312.62 Aligned_cols=163 Identities=26% Similarity=0.365 Sum_probs=142.7
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC--------------ce
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR--------------NL 340 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------~~ 340 (443)
.|+++||+++|+.+ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+.+ +.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999633 5789999999999999999999999999999999999999999998753 12
Q ss_pred EEEEeccCcccccccchhHHHHHHHh--CCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 341 KFGYFSQHHVDQLDMNLRCVQLLEAA--FPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 341 ~ig~~~Q~~~~~l~~~~~~~~~~~~~--~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++||+||++ .+.+..++.+++... ..+.+ .+.+.++++.+|+. +..+++|++|||||||||+|||||+.+|
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence 599999986 467778999988642 22233 34578899999995 6889999999999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
++|||||||++||+.++..+.+.|+++
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l 186 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEV 186 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998765
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.1e-39 Score=307.36 Aligned_cols=164 Identities=22% Similarity=0.336 Sum_probs=137.4
Q ss_pred CCeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eE
Q psy208 274 PPILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LK 341 (443)
Q Consensus 274 ~~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~ 341 (443)
..+|+++||+++|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+. ..
T Consensus 4 d~~Lev~~l~k~yg-~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp SEEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred ceEEEEeeEEEEEC-CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 46899999999995 678999999999999999999999999999999999999999999998642 23
Q ss_pred EEEeccCcccccccchhHHHHHHHhC-C--CCC--HHHHHHHHhcC-CCChhhhhccCCCCCHHHHHHHHHHHHhccCCC
Q psy208 342 FGYFSQHHVDQLDMNLRCVQLLEAAF-P--GKP--QEEYRRQLGGF-GVSGDLALQFVGSLSGGQKSRVAFARMCMAAPN 415 (443)
Q Consensus 342 ig~~~Q~~~~~l~~~~~~~~~~~~~~-~--~~~--~~~~~~~L~~~-gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~ 415 (443)
++|+||++ .+.+..++.+++.... . ... ...+..++..+ ++ .+..++++++|||||||||+|||||+.+|+
T Consensus 83 i~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred ccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCh-HHHHhCchhhCCHHHHHHHHHHHHHHhCCC
Confidence 89999985 3566778887765321 1 111 22344555555 34 356789999999999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||||||+|||+.++..+.+.|++.
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l 185 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred EeeecCCCcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999865
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-39 Score=309.38 Aligned_cols=163 Identities=27% Similarity=0.418 Sum_probs=140.4
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------------
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN---------------- 339 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~---------------- 339 (443)
.|+++||+|+|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+.
T Consensus 2 ~Lev~nl~k~yg-~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~ 80 (258)
T d1b0ua_ 2 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 80 (258)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEEEEEEEEC-CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccccc
Confidence 489999999995 678999999999999999999999999999999999999999999987542
Q ss_pred --------eEEEEeccCcccccccchhHHHHHHH---hCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHH
Q psy208 340 --------LKFGYFSQHHVDQLDMNLRCVQLLEA---AFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRV 404 (443)
Q Consensus 340 --------~~ig~~~Q~~~~~l~~~~~~~~~~~~---~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl 404 (443)
.++||+||++ .+.+..++.+++.. ...... .+.+.+++..+++.....+++|.+|||||||||
T Consensus 81 ~~~~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv 158 (258)
T d1b0ua_ 81 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV 158 (258)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHH
T ss_pred HhHHHHHhcceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHH
Confidence 2499999996 35666677776542 222233 245778899999986666888999999999999
Q ss_pred HHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 405 AFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 405 ~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|||+|+.+|++|||||||++||+.++..+.+.|++.
T Consensus 159 ~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l 195 (258)
T d1b0ua_ 159 SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL 195 (258)
T ss_dssp HHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.3e-38 Score=304.60 Aligned_cols=163 Identities=22% Similarity=0.256 Sum_probs=139.5
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc------------eEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN------------LKF 342 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~i 342 (443)
.+|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+.+. ..+
T Consensus 3 ~iL~v~nlsk~yg-~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 3 EILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred ceEEEEEEEEEEC-CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 4799999999996 678999999999999999999999999999999999999999999998652 239
Q ss_pred EEeccCcccccccchhHHHHHHHh----------------CCCCC---HHHHHHHHhcCCCChhhhhccCCCCCHHHHHH
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAA----------------FPGKP---QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSR 403 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~----------------~~~~~---~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqR 403 (443)
+|+||++. +.+..++.+++... ..... .+.+..+++.+++. ...++++++||||||||
T Consensus 82 ~~v~Q~~~--~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 82 VRTFQTPQ--PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKL 158 (254)
T ss_dssp EECCCCCG--GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHH
T ss_pred CccCCccc--cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHH
Confidence 99999873 55667777776421 00111 23566788889986 56789999999999999
Q ss_pred HHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 404 VAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 404 l~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+|||||+.+|++|||||||++||+.++..+.+.|++.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l 196 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 196 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.7e-38 Score=292.22 Aligned_cols=160 Identities=23% Similarity=0.343 Sum_probs=135.0
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC------ceEEEEeccCc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR------NLKFGYFSQHH 349 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~------~~~ig~~~Q~~ 349 (443)
.|+++||+++|+ +++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++ +.+++|++|+.
T Consensus 2 ~lev~~ls~~y~--~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~ 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 79 (200)
T ss_dssp EEEEEEEEEESS--SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred eEEEEEEEEEeC--CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc
Confidence 489999999994 5799999999999999999999999999999999999999999999865 33689999975
Q ss_pred ccccccchhHHHHHH---HhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 350 VDQLDMNLRCVQLLE---AAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 350 ~~~l~~~~~~~~~~~---~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
. +....++.+++. ..+ ......++...+..+++.. .++++++|||||||||+|||+++.+|++|||||||+|
T Consensus 80 ~--~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g 155 (200)
T d1sgwa_ 80 I--VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA 155 (200)
T ss_dssp C--CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred c--CCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 3 334445544443 222 2345677888888888742 4578899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHccc
Q psy208 426 LDIETIEALGKAINKY 441 (443)
Q Consensus 426 LD~~s~~~l~~~L~~~ 441 (443)
||+.++..+.+.|.++
T Consensus 156 LD~~~~~~i~~~l~~~ 171 (200)
T d1sgwa_ 156 IDEDSKHKVLKSILEI 171 (200)
T ss_dssp SCTTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.9e-38 Score=298.14 Aligned_cols=161 Identities=25% Similarity=0.369 Sum_probs=137.2
Q ss_pred EEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc----------eEEEEec
Q psy208 277 LQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN----------LKFGYFS 346 (443)
Q Consensus 277 l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig~~~ 346 (443)
|+++||+++|+ ++++|+|+||+|.+|+++||+||||||||||+|+|+|+++|++|+|.+.+. ..+||+|
T Consensus 3 I~v~nl~k~yg-~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 3 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp EEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEeEEEEEC-CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 78999999995 688999999999999999999999999999999999999999999998642 3599999
Q ss_pred cCcccccccchhHHHHHHH--hCCCCCH----HHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEe
Q psy208 347 QHHVDQLDMNLRCVQLLEA--AFPGKPQ----EEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLD 420 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~--~~~~~~~----~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLD 420 (443)
|.+ .+....++.+++.. .+..... +.+..++..+++. +..++++++||||||||++|||||+.+|++||||
T Consensus 82 q~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ecc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 985 34556666666532 1112222 3456778888885 6788999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHccc
Q psy208 421 EPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 421 EPTn~LD~~s~~~l~~~L~~~ 441 (443)
|||+|||+.++..+.+.|+++
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~ 179 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQA 179 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999765
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=7.1e-39 Score=304.08 Aligned_cols=163 Identities=28% Similarity=0.376 Sum_probs=130.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC-----------ceEEEE
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR-----------NLKFGY 344 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~-----------~~~ig~ 344 (443)
||+++||+|+|++++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +.++||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 689999999997667899999999999999999999999999999999999999999999864 235899
Q ss_pred eccCcccccccchhHHHHHHHh-CCCCCHHHHHHHHhcCCCC------hhhhh----ccCCCCCHHHHHHHHHHHHhccC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAA-FPGKPQEEYRRQLGGFGVS------GDLAL----QFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~gl~------~~~~~----~~~~~LSgGekqRl~lA~al~~~ 413 (443)
++|++. +. ..++.+++... ............+...++. ++..+ ..+.+|||||||||+|||||+.+
T Consensus 81 v~Q~~~--lf-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDSA--IM-AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSSC--CC-CEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred Eccccc--cC-CcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999873 33 33777776432 2223455544444433321 11222 34567999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||+.+...+.+.|.++
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l 185 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSL 185 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred CCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-38 Score=296.41 Aligned_cols=162 Identities=30% Similarity=0.446 Sum_probs=133.4
Q ss_pred EEEeeeEEEeCC-CCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEEE
Q psy208 277 LQLSEVNFEYVP-GKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFGY 344 (443)
Q Consensus 277 l~~~~l~~~y~~-~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig~ 344 (443)
|+++||+|+|++ .+++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 689999999964 356999999999999999999999999999999999999999999998752 35999
Q ss_pred eccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCC
Q psy208 345 FSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAP 414 (443)
Q Consensus 345 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p 414 (443)
++|++. + ...|+.+++....+....+++...+...++.. ......+..|||||||||+|||||+.+|
T Consensus 82 v~Q~~~--l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDNV--L-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSCC--C-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred Eecccc--c-CCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhccc
Confidence 999973 3 34588888865444455555555544433311 1233456899999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 415 NFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 415 ~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+||||||||++||+.+...+.+.|.+.
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l 185 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKI 185 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred chhhhhCCccccCHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3e-37 Score=294.64 Aligned_cols=163 Identities=25% Similarity=0.301 Sum_probs=132.4
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
-|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 92 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 92 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEE
Confidence 38999999999754 46999999999999999999999999999999999999999999998642 2599
Q ss_pred EeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhcc
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMA 412 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~ 412 (443)
|++|++. +. ..+..+++.... .....+++...+...++.. ......+..|||||||||+|||||+.
T Consensus 93 ~v~Q~~~--l~-~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~ 169 (253)
T d3b60a1 93 LVSQNVH--LF-NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 169 (253)
T ss_dssp EECSSCC--CC-SSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEeeccc--cC-CcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhc
Confidence 9999873 22 335555554322 2345666666666555421 12234567899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 413 APNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 413 ~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+|+||||||||++||+.+...+.+.|.++
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l 198 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDEL 198 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999998764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.3e-37 Score=295.41 Aligned_cols=163 Identities=26% Similarity=0.394 Sum_probs=137.9
Q ss_pred eEEEeeeEEEeCCC-CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 276 ILQLSEVNFEYVPG-KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 276 ~l~~~~l~~~y~~~-~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
-|+++||+|+|+++ +++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~ 95 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 95 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheee
Confidence 39999999999754 57999999999999999999999999999999999999999999998642 3699
Q ss_pred EeccCcccccccchhHHHHHHHhCCCCCHHHHHHHHhcCCCChhh----------hhccCCCCCHHHHHHHHHHHHhccC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQLGGFGVSGDL----------ALQFVGSLSGGQKSRVAFARMCMAA 413 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~~~~LSgGekqRl~lA~al~~~ 413 (443)
|++|++. + ...|+.+++....+...++++.+.+...++.... ....+.+|||||||||+|||||+.+
T Consensus 96 ~v~Q~~~--l-f~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~ 172 (255)
T d2hyda1 96 LVQQDNI--L-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 172 (255)
T ss_dssp EECSSCC--C-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred eeecccc--C-CCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcC
Confidence 9999863 3 3458888886555556677788888777763211 1234567999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 414 PNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 414 p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
|+||||||||++||+.+...+.+.|..+
T Consensus 173 p~ililDEpts~LD~~t~~~i~~~l~~l 200 (255)
T d2hyda1 173 PPILILDEATSALDLESESIIQEALDVL 200 (255)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-37 Score=291.97 Aligned_cols=162 Identities=22% Similarity=0.335 Sum_probs=129.3
Q ss_pred eEEEeeeEEEeCCC--CceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEE
Q psy208 276 ILQLSEVNFEYVPG--KPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKF 342 (443)
Q Consensus 276 ~l~~~~l~~~y~~~--~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 342 (443)
.|+++||+|+|++. .++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 49999999999642 35999999999999999999999999999999999999999999998752 359
Q ss_pred EEeccCcccccccchhHHHHHHHhCC-CCCHHHHHH---------HHhcC--CCChhhhhccCCCCCHHHHHHHHHHHHh
Q psy208 343 GYFSQHHVDQLDMNLRCVQLLEAAFP-GKPQEEYRR---------QLGGF--GVSGDLALQFVGSLSGGQKSRVAFARMC 410 (443)
Q Consensus 343 g~~~Q~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~---------~L~~~--gl~~~~~~~~~~~LSgGekqRl~lA~al 410 (443)
+|++|++. +. ..++.+++..... ......... .+..+ |+. ...++.+.+|||||||||+|||||
T Consensus 91 ~~v~Q~~~--lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 91 AAVGQEPQ--VF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp EEECSSCC--CC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred hhcccccc--cc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccch-hhHhccCccCChhHceEEEEeecc
Confidence 99999973 32 3477777754322 223222222 23333 221 234456789999999999999999
Q ss_pred ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 411 MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 411 ~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
+.+|+||||||||++||+.+...+.+.|.+.
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l 197 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYES 197 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTC
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHH
Confidence 9999999999999999999999999998764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.2e-36 Score=286.45 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=134.9
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcC---------ceEEEEec
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHR---------NLKFGYFS 346 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~---------~~~ig~~~ 346 (443)
.|++ ++.++|+ +. -+ ||||++. +++++|+||||||||||+|+|+|+++|++|+|.+.+ +..+||+|
T Consensus 2 ~l~v-~~~k~~g-~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~ 76 (240)
T d2onka1 2 FLKV-RAEKRLG-NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVP 76 (240)
T ss_dssp CEEE-EEEEEET-TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCC
T ss_pred EEEE-EEEEEEC-CE-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeec
Confidence 3677 6789995 33 34 8999995 689999999999999999999999999999999864 23699999
Q ss_pred cCcccccccchhHHHHHHHhCCCCC----HHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCC
Q psy208 347 QHHVDQLDMNLRCVQLLEAAFPGKP----QEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEP 422 (443)
Q Consensus 347 Q~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEP 422 (443)
|++ .+.+..|+.+++........ .+.+.++++.+|+. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 77 Q~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEP 153 (240)
T d2onka1 77 QDY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEP 153 (240)
T ss_dssp SSC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEEST
T ss_pred cch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCc
Confidence 986 46677889998865333322 24578899999996 688999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHccc
Q psy208 423 TNHLDIETIEALGKAINKY 441 (443)
Q Consensus 423 Tn~LD~~s~~~l~~~L~~~ 441 (443)
|++||+.++..+.+.|+++
T Consensus 154 ts~LD~~~~~~i~~~i~~l 172 (240)
T d2onka1 154 LSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp TSSCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-33 Score=265.39 Aligned_cols=158 Identities=27% Similarity=0.352 Sum_probs=129.4
Q ss_pred CeEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCc-----------eEEE
Q psy208 275 PILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRN-----------LKFG 343 (443)
Q Consensus 275 ~~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 343 (443)
.+|+++||+++| .|+||||+|++||++||+||||||||||+++|+|+. |++|+|.+.+. ...+
T Consensus 2 ~il~~~dv~~~~-----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 2 IVMQLQDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEEEECCTT-----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred eEEEEECcccCc-----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 378999997643 699999999999999999999999999999999975 68999988642 1478
Q ss_pred EeccCcccccccchhHHHHHHHhC-CCCCHHHHHHHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc-------CCC
Q psy208 344 YFSQHHVDQLDMNLRCVQLLEAAF-PGKPQEEYRRQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA-------APN 415 (443)
Q Consensus 344 ~~~Q~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~-------~p~ 415 (443)
|++|... .....++...+.... .....+.+.+++..+++. +..++++.+|||||||||+||+++++ +|+
T Consensus 76 ~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~ 152 (231)
T d1l7vc_ 76 YLSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQ 152 (231)
T ss_dssp EECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCC
T ss_pred eeecccc--CCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCC
Confidence 9988753 223344555444322 233456677888999986 57789999999999999999999986 679
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 416 FLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 416 lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
||||||||++||+.++..+.+.|+++
T Consensus 153 llllDEPt~gLD~~~~~~i~~~i~~l 178 (231)
T d1l7vc_ 153 LLLLDEPMNSLDVAQQSALDKILSAL 178 (231)
T ss_dssp EEEESSCSTTCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.8e-33 Score=270.00 Aligned_cols=154 Identities=23% Similarity=0.342 Sum_probs=119.6
Q ss_pred eEEEeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCccccccc
Q psy208 276 ILQLSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDM 355 (443)
Q Consensus 276 ~l~~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~ 355 (443)
.|.++|+++ . ++++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+.+ +++|++|++. +.
T Consensus 38 ~i~~~~~~~--~-g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--~i~~v~Q~~~--l~- 109 (281)
T d1r0wa_ 38 NVSFSHLCL--V-GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--RVSFCSQFSW--IM- 109 (281)
T ss_dssp --CHHHHHH--T-TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS--CEEEECSSCC--CC-
T ss_pred cEEEEEcCC--C-CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC--EEEEEecccc--cc-
Confidence 356666664 3 46899999999999999999999999999999999999999999998876 5899999863 22
Q ss_pred chhHHHHHHHhCCCCCHHHHHHHHhcCCCCh----------hhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCCCC
Q psy208 356 NLRCVQLLEAAFPGKPQEEYRRQLGGFGVSG----------DLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPTNH 425 (443)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~----------~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPTn~ 425 (443)
..++.+++... ...........+....+.. ....+.+.+|||||||||+|||||+.+|+||||||||++
T Consensus 110 ~~tv~eni~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 110 PGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp SEEHHHHHTTT-SCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred Cceeecccccc-ccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 24677776422 2234444445444433311 112345668999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHH
Q psy208 426 LDIETIEALGKAI 438 (443)
Q Consensus 426 LD~~s~~~l~~~L 438 (443)
||+.+.+.+.+.+
T Consensus 189 LD~~~~~~i~~~~ 201 (281)
T d1r0wa_ 189 LDVFTEEQVFESC 201 (281)
T ss_dssp SCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988754
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.58 E-value=7.3e-15 Score=137.16 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HH----HHHHHHHhhhCCCeE
Q psy208 114 KAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MA----IIWLENYLQNWPTTL 163 (443)
Q Consensus 114 ~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~----i~wL~~~L~~~~~tv 163 (443)
+++.|+.++|+.+|+.+ ..++++++||||||| .+ ...|.+..++++.||
T Consensus 115 e~~~~v~~~l~~~~l~~-~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv 193 (240)
T d1g2912 115 EIDQRVREVAELLGLTE-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT 193 (240)
T ss_dssp HHHHHHHHHHHHHTCGG-GTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCChh-HhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEE
Confidence 34578999999999975 578999999999999 22 233444445679999
Q ss_pred EEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 164 LVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 164 iiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
|+||||.+++..+||||+.|++|++... |+.++.
T Consensus 194 i~vTHd~~~~~~~~drv~vm~~G~iv~~-G~~~el 227 (240)
T d1g2912 194 IYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDEV 227 (240)
T ss_dssp EEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHH
T ss_pred EEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHH
Confidence 9999999999999999999999999754 776543
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.56 E-value=8.7e-15 Score=135.96 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------------HHHH----HHHHHhhhCCCe
Q psy208 113 DKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------------MAII----WLENYLQNWPTT 162 (443)
Q Consensus 113 ~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------------~~i~----wL~~~L~~~~~t 162 (443)
.+++.|+.++|+.+|+.+ ..++++++||||||| .+.. +|.+..++.+.|
T Consensus 105 ~~~~~~v~~~l~~~~l~~-~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~t 183 (232)
T d2awna2 105 EVINQRVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 183 (232)
T ss_dssp CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHhCCChh-hhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 455678999999999985 579999999999999 2333 344433567999
Q ss_pred EEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 163 LLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 163 viiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+|+||||.+++..+||||+.|++|++.. .|+.++.
T Consensus 184 ii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el 218 (232)
T d2awna2 184 MIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLEL 218 (232)
T ss_dssp EEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEEE-EeCHHHH
Confidence 9999999999999999999999999975 4776554
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=9.6e-15 Score=136.17 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=93.3
Q ss_pred HHHHHHHccccccCCCCCcceEEecC---------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS---------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~---------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
+++++.++|.+.| ++|+|.+.. .-+|||++|++.. +..|+.+.+.-...
T Consensus 46 STLl~~i~Gl~~p----~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~----------------- 104 (239)
T d1v43a3 46 TTTLRMIAGLEEP----TEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLK----------------- 104 (239)
T ss_dssp HHHHHHHHTSSCC----SEEEEEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----------------
T ss_pred HHHHHHHHcCCCC----CCCEEEEcceecccCCcccceEEEEeechhhcccchHHHHHHHHHH-----------------
Confidence 3444444444444 558887631 1249999999864 34566654432110
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
+..++..+++.|+.++|+.+|+++ ..++++++|||||||
T Consensus 105 ------------------~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts 165 (239)
T d1v43a3 105 ------------------IKKFPKDEIDKRVRWAAELLQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 165 (239)
T ss_dssp --------------------CCCHHHHHHHHHHHHHHTTCGG-GTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ------------------HcCCCHHHHHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcc
Confidence 001112245578999999999975 679999999999999
Q ss_pred --------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 --------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 --------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+-..+|.+..++.+.|||+||||.++...+||||+.|++|++. ..|+.++.
T Consensus 166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv-~~G~~~el 224 (239)
T d1v43a3 166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLL-QIGSPTEV 224 (239)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 2233444444667999999999999999999999999999997 46776554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.6e-14 Score=133.33 Aligned_cols=138 Identities=14% Similarity=0.189 Sum_probs=98.8
Q ss_pred HHHHHHHccccccCCCCCcceEEecCC--------------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSH--------------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTI 83 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~--------------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l 83 (443)
+++.+.+.|...|++ |+|.+.+. -+|||++|++.. +..|+.+.+... +
T Consensus 45 STLl~~i~Gl~~p~s----G~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~------l------- 107 (240)
T d3dhwc1 45 STLIRCVNLLERPTE----GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP------L------- 107 (240)
T ss_dssp HHHHHHHTTSSCCSE----EEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHH------H-------
T ss_pred HHHHHHHcCCccccC----CceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHHHHHHHH------H-------
Confidence 567777777776654 88886421 149999999854 455776554311 0
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------
Q psy208 84 TQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------- 146 (443)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------- 146 (443)
.+..+...+++.|+.++|+.+|+++ ..++++++|||||||
T Consensus 108 ----------------------~~~~~~~~~~~~~v~~~L~~vgL~~-~~~~~~~~LSGG~~QRvaiAraL~~~P~lLll 164 (240)
T d3dhwc1 108 ----------------------ELDNTPKDEVKRRVTELLSLVGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLC 164 (240)
T ss_dssp ----------------------HTTTCCTTHHHHHHHHHHHHHSTTT-TTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred ----------------------HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCHHHHHHHHHhhhhccCCCeEEe
Confidence 0112233345678999999999985 579999999999999
Q ss_pred ------------HHH-HHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhH
Q psy208 147 ------------MAI-IWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEA 197 (443)
Q Consensus 147 ------------~~i-~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~ 197 (443)
..+ ..|.+.-++++.|||+||||.+++..+||||++|++|++.. .|+.++
T Consensus 165 DEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~e 227 (240)
T d3dhwc1 165 DEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSE 227 (240)
T ss_dssp ESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTT
T ss_pred ccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 222 23334335679999999999999999999999999999974 566543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.53 E-value=2.2e-14 Score=133.92 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=97.2
Q ss_pred HHHHHHHccccccCCCCCcceEEecC--------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS--------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTI 83 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~--------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l 83 (443)
+++.+.++|...|+ +|+|.+.. .-+|||++|++.. +..|+.+.+.-...
T Consensus 45 STll~~i~gl~~p~----~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~------------ 108 (242)
T d1oxxk2 45 TTFMRIIAGLDVPS----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT------------ 108 (242)
T ss_dssp HHHHHHHHTSSCCS----EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT------------
T ss_pred HHHHHHHHcCcCCC----CceEEECCEEeecCchhhcchhhccceEEeccccccccccHHHHhhhhhH------------
Confidence 45666666666655 47776521 1159999999865 44577665542210
Q ss_pred HHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------
Q psy208 84 TQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK----------------- 146 (443)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~----------------- 146 (443)
. ..++..+++.|+.++|+.+|+.+ ..++++++|||||||
T Consensus 109 -----~------------------~~~~~~~~~~~v~~~l~~~gL~~-~~~~~p~~LSGGqkQRvaiARaL~~~P~llll 164 (242)
T d1oxxk2 109 -----N------------------MKMSKEEIRKRVEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKDPSLLLL 164 (242)
T ss_dssp -----T------------------SSCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -----h------------------hcCCHHHHHHHHHHHHhhcChHh-hhhCChhhCCHHHHhHHHHHhHHhhcccceee
Confidence 0 01112235578999999999974 579999999999999
Q ss_pred ------------H-HHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ------------M-AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ------------~-~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
. -...|.+..++.+.|||+||||.+++.++||||+.|++|++.. .|+..+.
T Consensus 165 DEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el 228 (242)
T d1oxxk2 165 DEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDL 228 (242)
T ss_dssp ESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHH
T ss_pred cCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-EcCHHHH
Confidence 2 2233334335678999999999999999999999999999975 4665443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.53 E-value=2.5e-14 Score=135.22 Aligned_cols=84 Identities=27% Similarity=0.393 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhCCCChhhhhccCCCCChHHHH-----------------------------HHHHHHHHHhhhCCCeEEE
Q psy208 115 APARASVILAGLGFTPEMQKRATKHFSGGWRK-----------------------------MAIIWLENYLQNWPTTLLV 165 (443)
Q Consensus 115 ~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-----------------------------~~i~wL~~~L~~~~~tvii 165 (443)
...++.++|..+|+.+...++.+++||||||| ..+.-+..-|++.+.|||+
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~ 204 (258)
T d1b0ua_ 125 ARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVV 204 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEE
Confidence 45689999999999876668889999999999 3333444445556789999
Q ss_pred EecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 166 VSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 166 VSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
||||.+++..+||||++|++|+|. ..|+.++..
T Consensus 205 vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev~ 237 (258)
T d1b0ua_ 205 VTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 237 (258)
T ss_dssp ECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999999999997 557776643
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.50 E-value=3.5e-14 Score=132.23 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=99.7
Q ss_pred hHHHHHHHccccccCCCCCcceEEec---------CCceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIP---------SHISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAI 87 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~---------~~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 87 (443)
=+++++.|.|.+.|++ |+|.+. ..-+|||++|++.. +..|+.+.+.-+..
T Consensus 37 KSTll~~i~Gl~~p~~----G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~---------------- 96 (240)
T d2onka1 37 KSVFLELIAGIVKPDR----GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR---------------- 96 (240)
T ss_dssp HHHHHHHHHTSSCCSE----EEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT----------------
T ss_pred HHHHHHHHHcCCCCCc----eEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhhhhc----------------
Confidence 3577777777777765 888753 11269999999865 34577655532210
Q ss_pred hCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH---------------------
Q psy208 88 NNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK--------------------- 146 (443)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~--------------------- 146 (443)
. .+..+.+.|+.++|+.+|+.+ ..++++++|||||||
T Consensus 97 --~-------------------~~~~~~~~~v~~~l~~~gl~~-~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPt 154 (240)
T d2onka1 97 --N-------------------VERVERDRRVREMAEKLGIAH-LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPL 154 (240)
T ss_dssp --T-------------------SCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTT
T ss_pred --c-------------------cCHHHHHHHHHHHHHhcCcHh-hhhCChhhCCHHHHHHHHHHHHHhccCCceEecCcc
Confidence 0 001123468999999999985 579999999999999
Q ss_pred -----HHHH----HHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 147 -----MAII----WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 147 -----~~i~----wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+.. .+.+..++.+.|||+||||.+.+..+||||+.|++|++.. .|+..+..
T Consensus 155 s~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~ 215 (240)
T d2onka1 155 SAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELF 215 (240)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-EecHHHHh
Confidence 2222 3333335568999999999999999999999999999975 58876654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.50 E-value=4e-14 Score=131.37 Aligned_cols=135 Identities=16% Similarity=0.125 Sum_probs=91.4
Q ss_pred HHHHHHHccccccCCCCCcceEEecC----C-----------ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS----H-----------ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKT 82 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~----~-----------~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~ 82 (443)
++|.+.++|...|+ +|+|.+.. + -.|||++|++.. +..|+.+.+.-..
T Consensus 45 STLl~~i~gl~~p~----sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~------------ 108 (230)
T d1l2ta_ 45 STMLNIIGCLDKPT----EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPL------------ 108 (230)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHH------------
T ss_pred chhhHhccCCCCCC----cceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHH------------
Confidence 45666666666654 59998642 1 149999999864 4556665543110
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------
Q psy208 83 ITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------- 146 (443)
Q Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------- 146 (443)
.+.. .. .....+...++.+.|+.+|+++...++++++|||||||
T Consensus 109 ---~~~~-~~----------------~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLl 168 (230)
T d1l2ta_ 109 ---IFKY-RG----------------AMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIIL 168 (230)
T ss_dssp ---HTCC-SS----------------CCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ---HHhc-cC----------------CCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEE
Confidence 0000 00 00111233578888999999876678999999999999
Q ss_pred --------------HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEE
Q psy208 147 --------------MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDT 190 (443)
Q Consensus 147 --------------~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~ 190 (443)
.-...|.++-++++.|||+||||.++. ++||||+.|++|+|..
T Consensus 169 lDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 169 ADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred ecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEE
Confidence 233344443356789999999999987 6999999999999964
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.49 E-value=9.3e-16 Score=135.61 Aligned_cols=118 Identities=16% Similarity=0.123 Sum_probs=75.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceE------EEEecc--CcccccccchhHHHHHHHhCCCCCHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLK------FGYFSQ--HHVDQLDMNLRCVQLLEAAFPGKPQEEYR 376 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~------ig~~~Q--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 376 (443)
+++|+||||||||||+++|+|.++|+.|.+....... .++... ........... ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----- 67 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF---------FTSK----- 67 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETT---------CCCS-----
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhh---------hhhh-----
Confidence 5899999999999999999999999999887643111 111110 00000000000 0000
Q ss_pred HHHhcCCCChhhhhccCCCCCHHHHHHHHHHHHhccCCCeEEEeCCC--CCCCHHHHHHHHHHHccc
Q psy208 377 RQLGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMAAPNFLVLDEPT--NHLDIETIEALGKAINKY 441 (443)
Q Consensus 377 ~~L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~~p~lLiLDEPT--n~LD~~s~~~l~~~L~~~ 441 (443)
...++++.. .....+|+|+++|.++++++..+|++|++|||+ ...+......+.+++.+.
T Consensus 68 ~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~ 129 (178)
T d1ye8a1 68 KLVGSYGVN-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP 129 (178)
T ss_dssp SEETTEEEC-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT
T ss_pred hhhhhhhcC-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccC
Confidence 000112221 223358999999999999999999999999975 445677788888888764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.48 E-value=6.7e-14 Score=130.92 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=104.8
Q ss_pred CcccchhhhhhhhhhcchHHHHHHHcccccc---------CC--------------CCCcceEEecC------------C
Q psy208 1 MMSQRVNTVSNSIFCFSSEFYCKALTLHLHL---------EG--------------GMVSGQLRIPS------------H 45 (443)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--------------~~~~G~i~~~~------------~ 45 (443)
|||.-+=.+.|+++.||.....+.+++.+.+ +| .|++|+|.+.+ .
T Consensus 1 M~sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r 80 (240)
T d1ji0a_ 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80 (240)
T ss_dssp CCCSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHH
T ss_pred CCcceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHH
Confidence 7888888888888888764333333333333 22 14679998642 1
Q ss_pred ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHH
Q psy208 46 ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMSTELTQVFAELEAIEADKAPARASVILA 124 (443)
Q Consensus 46 ~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~ 124 (443)
..|+|+||+... +..|+.+.+..... .. . .......+++.++.
T Consensus 81 ~gi~~~~q~~~l~~~ltv~en~~~~~~----------------~~--~------------------~~~~~~~~~~~~~~ 124 (240)
T d1ji0a_ 81 MGIALVPEGRRIFPELTVYENLMMGAY----------------NR--K------------------DKEGIKRDLEWIFS 124 (240)
T ss_dssp TTEEEECSSCCCCTTSBHHHHHHGGGT----------------TC--C------------------CSSHHHHHHHHHHH
T ss_pred hcccccCcccccCCcccHHHHHHHHHH----------------hc--C------------------CHHHHHHHHHHHHH
Confidence 249999999864 45566655432110 00 0 01112233444444
Q ss_pred hC-CCChhhhhccCCCCChHHHH--------------------------HHHHHHHHH---hhhCCCeEEEEecCHHHHh
Q psy208 125 GL-GFTPEMQKRATKHFSGGWRK--------------------------MAIIWLENY---LQNWPTTLLVVSHDRHFLD 174 (443)
Q Consensus 125 ~l-gl~~~~~~~~~~~LSGGqr~--------------------------~~i~wL~~~---L~~~~~tviiVSHDr~fLd 174 (443)
.+ ++. ...++++++||||||| .+..++.+. |++.+.|||+||||.+++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~ 203 (240)
T d1ji0a_ 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 44 343 3468999999999999 344444444 4555789999999999999
Q ss_pred ccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 175 SVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 175 ~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
++||||+.|++|++. +.|+.++..
T Consensus 204 ~~~drv~vl~~G~iv-~~g~~~el~ 227 (240)
T d1ji0a_ 204 KVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999996 578887754
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.47 E-value=1.2e-13 Score=127.75 Aligned_cols=136 Identities=14% Similarity=0.107 Sum_probs=97.0
Q ss_pred HHHHHHHccccccCCCCCcceEEecC----C-----ceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHHHh
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS----H-----ISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQAIN 88 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~----~-----~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 88 (443)
+++++.++|.+.|+. |+|.+.+ + -+|||++|++.. +..|+.+.+.-+. .+
T Consensus 40 STll~~l~Gl~~p~s----G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~---------------~~- 99 (229)
T d3d31a2 40 TLFLELIAGFHVPDS----GRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM---------------RM- 99 (229)
T ss_dssp HHHHHHHHTSSCCSE----EEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHH---------------HH-
T ss_pred HHHHHHHhcCcCCCC----CEEEEccEeccccchhHhcceeeccccccCccccHHHHHHHHH---------------hh-
Confidence 456677777666654 8887641 1 149999999865 3456665442110 00
Q ss_pred CCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH----------------------
Q psy208 89 NGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK---------------------- 146 (443)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~---------------------- 146 (443)
.+...+.|+.+++..+|+.+ ..++++.+|||||||
T Consensus 100 ----------------------~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 100 ----------------------KKIKDPKRVLDTARDLKIEH-LLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp ----------------------HCCCCHHHHHHHHHHTTCTT-TTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred ----------------------ccccHHHHHHHHHHHhcchh-hHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCc
Confidence 01222457889999999985 578999999999999
Q ss_pred ----HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 ----MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 ----~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+...+.+.| ++++.|||+||||.+++..+||||+.|++|++. ..|+.++.
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv-~~g~~~el 215 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI-QVGKPEEI 215 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE-EEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 3334444333 557889999999999999999999999999997 45776654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=3.8e-13 Score=125.52 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=97.2
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC----------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHHH
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS----------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQA 86 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~----------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 86 (443)
=++|++.++|.+.|+. |+|.+.. .-.+||+||+... ...++.+.+.-. ..
T Consensus 41 KSTLl~~l~G~~~p~~----G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~---------------~~ 101 (238)
T d1vpla_ 41 KTTTLRIISTLIKPSS----GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFV---------------AG 101 (238)
T ss_dssp HHHHHHHHTTSSCCSE----EEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHH---------------HH
T ss_pred HHHHHHHHhcCCCCCC----CEEEECcEecccChHHHHhhEeEeeeccccCCCccHHHHHHHH---------------HH
Confidence 3566666666666654 8887632 1369999999754 445665543210 01
Q ss_pred HhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH--------------------
Q psy208 87 INNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK-------------------- 146 (443)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~-------------------- 146 (443)
+. .....++..+++.++..+|+.+ ..++++.+|||||||
T Consensus 102 ~~--------------------~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEP 160 (238)
T d1vpla_ 102 FY--------------------ASSSSEIEEMVERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEP 160 (238)
T ss_dssp HH--------------------CCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred hc--------------------CCCHHHHHHHHHHHHHhCCCHH-HHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 10 0111123457888888899975 468899999999999
Q ss_pred ------HHHHHHHHHh---hhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHH
Q psy208 147 ------MAIIWLENYL---QNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFD 199 (443)
Q Consensus 147 ------~~i~wL~~~L---~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~ 199 (443)
.+...+.++| ++-+.|||+||||.+++..+||||+.|++|++. +.|+.++..
T Consensus 161 t~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv-~~g~~~el~ 221 (238)
T d1vpla_ 161 TSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIV-ETGTVEELK 221 (238)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 2333444444 445789999999999999999999999999997 568877653
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=2.7e-13 Score=127.86 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=97.5
Q ss_pred HHHHHHHccccccCCCCCcceEEecC------------CceEEEEecccCC-CCchHHHHHHhccHHHHHHHHHHHHHHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPS------------HISVLHVEQEVVG-DDTPAIDSVLECDTKRQNLLNREKTITQ 85 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~------------~~~i~~l~Q~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 85 (443)
++|++.++|.+.|+ +|+|.+.+ ...|+|++|++.. ...|+.+.+.-+...
T Consensus 44 STLl~~i~Gl~~p~----~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~------------- 106 (254)
T d1g6ha_ 44 STLINVITGFLKAD----EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEIC------------- 106 (254)
T ss_dssp HHHHHHHTTSSCCS----EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTS-------------
T ss_pred HHHHHHHHCCCcCC----CcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhh-------------
Confidence 35555555555554 59998642 1249999999853 456676655432100
Q ss_pred HHhCCCCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH-------------------
Q psy208 86 AINNGTADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------- 146 (443)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------- 146 (443)
... . .+.....+...........++.++++.+|+.. ..++++++|||||||
T Consensus 107 ---~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDE 176 (254)
T d1g6ha_ 107 ---PGE-S-----PLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 176 (254)
T ss_dssp ---TTS-C-----HHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-GTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred ---ccc-c-----chhhhhhhcccccHHHHHHHHHHHHHhcCcch-hccCchhhCCcHHHHHHHHHHHHHhCcCchhhcC
Confidence 000 0 00001100001111123457889999999985 468999999999999
Q ss_pred -------HHHH---HHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 147 -------MAII---WLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 147 -------~~i~---wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
.+.. -+..-|++.+.|||+||||.+++.++||||++|++|++. ..|..++.
T Consensus 177 Pt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv-~~g~~~e~ 237 (254)
T d1g6ha_ 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII-AEGRGEEE 237 (254)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE-EEEESHHH
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEE-EEecHHHH
Confidence 2333 333345666889999999999999999999999999997 45776653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=9.8e-12 Score=116.72 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=51.7
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHh----hhCCCeEEEEecCHHHHhccCCcEEE
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYL----QNWPTTLLVVSHDRHFLDSVPTDIFH 182 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L----~~~~~tviiVSHDr~fLd~v~~~i~~ 182 (443)
.++...+||||||| .+...+.+.| +.++.|+|+||||.+.+.. ||+|++
T Consensus 145 i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~v 223 (251)
T d1jj7a_ 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILF 223 (251)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEE
T ss_pred HhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh-CCEEEE
Confidence 45667899999999 3334444444 3457899999999998865 999999
Q ss_pred EeCCeeEEEcCChhHHHHH
Q psy208 183 LHSQRIDTYRGNYEAFDKI 201 (443)
Q Consensus 183 l~~g~i~~~~G~y~~y~~~ 201 (443)
|++|+|.. .|++++..+.
T Consensus 224 l~~G~iv~-~Gt~~eLl~~ 241 (251)
T d1jj7a_ 224 LEGGAIRE-GGTHQQLMEK 241 (251)
T ss_dssp EETTEEEE-EECHHHHHHH
T ss_pred EECCEEEE-ECCHHHHHhC
Confidence 99999975 5998876543
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.20 E-value=7.4e-11 Score=110.74 Aligned_cols=66 Identities=20% Similarity=0.188 Sum_probs=50.6
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
......+||||||| .+...+.+.|++ .+.|+|+||||.+++. .||+|++|+
T Consensus 146 ~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~ 224 (253)
T d3b60a1 146 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVE 224 (253)
T ss_dssp CCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEE
T ss_pred hcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 34557899999999 343444444432 2789999999999985 699999999
Q ss_pred CCeeEEEcCChhHHHH
Q psy208 185 SQRIDTYRGNYEAFDK 200 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~ 200 (443)
+|+|+. .|++++..+
T Consensus 225 ~G~Iv~-~G~~~eLl~ 239 (253)
T d3b60a1 225 DGIIVE-RGTHSELLA 239 (253)
T ss_dssp TTEEEE-EECHHHHHH
T ss_pred CCEEEE-ECCHHHHHh
Confidence 999975 589887654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=8.5e-11 Score=109.46 Aligned_cols=67 Identities=13% Similarity=0.173 Sum_probs=50.7
Q ss_pred hhccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 133 QKRATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 133 ~~~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
.......||||||| .+...+.+.|++ .+.|+|+||||.+++. .||+|++|+
T Consensus 133 i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~ 211 (241)
T d2pmka1 133 VGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVME 211 (241)
T ss_dssp CSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEE
T ss_pred cCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 34567899999999 333344444432 2679999999999985 599999999
Q ss_pred CCeeEEEcCChhHHHHH
Q psy208 185 SQRIDTYRGNYEAFDKI 201 (443)
Q Consensus 185 ~g~i~~~~G~y~~y~~~ 201 (443)
+|+|.. .|++++....
T Consensus 212 ~G~Iv~-~G~~~ell~~ 227 (241)
T d2pmka1 212 KGKIVE-QGKHKELLSE 227 (241)
T ss_dssp TTEEEE-EECHHHHHHS
T ss_pred CCEEEE-ECCHHHHHhC
Confidence 999975 5898876543
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.13 E-value=3.7e-10 Score=107.44 Aligned_cols=142 Identities=12% Similarity=0.073 Sum_probs=85.7
Q ss_pred HHHHHHHccccccCCCCCcceEEecCCceEEEEecccCCCCchHHHHHHhccHHHHHHHHHHHHHHHHHhCCCCChhhHH
Q psy208 19 EFYCKALTLHLHLEGGMVSGQLRIPSHISVLHVEQEVVGDDTPAIDSVLECDTKRQNLLNREKTITQAINNGTADANMST 98 (443)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~G~i~~~~~~~i~~l~Q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 98 (443)
++|.+.+.|.+.|+. |+|.+.+ +++|++|++..-+.|+.+.+.-+.. .+. .
T Consensus 76 STLl~~i~Gl~~p~~----G~I~~~g--~i~~v~Q~~~l~~~tv~eni~~~~~--------------------~~~---~ 126 (281)
T d1r0wa_ 76 TSLLMLILGELEASE----GIIKHSG--RVSFCSQFSWIMPGTIKENIIFGVS--------------------YDE---Y 126 (281)
T ss_dssp HHHHHHHHTSSCCSE----EEEECCS--CEEEECSSCCCCSEEHHHHHTTTSC--------------------CCH---H
T ss_pred HHHHHHHhCCCcCCC----cEEEECC--EEEEEeccccccCceeecccccccc--------------------ccc---h
Confidence 456666666666554 9998876 7999999986555566665543210 000 0
Q ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhCCC-ChhhhhccCCCCChHHHH--------------------------HHHHH
Q psy208 99 ELTQVFAELEAIEADKAPARASVILAGLGF-TPEMQKRATKHFSGGWRK--------------------------MAIIW 151 (443)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl-~~~~~~~~~~~LSGGqr~--------------------------~~i~w 151 (443)
++..+.... .....+..+.- ......+...+||||||| .+..+
T Consensus 127 ~~~~~~~~~----------~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~ 196 (281)
T d1r0wa_ 127 RYKSVVKAC----------QLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 196 (281)
T ss_dssp HHHHHHHHT----------TCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHH
T ss_pred HHHHHHHHH----------HhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHH
Confidence 111111100 00011111110 011234456789999999 34555
Q ss_pred HHHH-hhh--CCCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHHH
Q psy208 152 LENY-LQN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDKI 201 (443)
Q Consensus 152 L~~~-L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~~ 201 (443)
+.+. +.. .+.|+|+||||.+.+. .||+|++|++|++. +.|++++....
T Consensus 197 i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~-~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 197 VFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSY-FYGTFSELQSL 247 (281)
T ss_dssp HHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEE-EEECHHHHHHH
T ss_pred HHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCEEE-EECCHHHHhcc
Confidence 5544 332 3579999999999885 69999999999996 45999887543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.11 E-value=2.7e-10 Score=106.82 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=49.3
Q ss_pred ccCCCCChHHHH--------------------------HHHHHHHHHhhh--CCCeEEEEecCHHHHhccCCcEEEEeCC
Q psy208 135 RATKHFSGGWRK--------------------------MAIIWLENYLQN--WPTTLLVVSHDRHFLDSVPTDIFHLHSQ 186 (443)
Q Consensus 135 ~~~~~LSGGqr~--------------------------~~i~wL~~~L~~--~~~tviiVSHDr~fLd~v~~~i~~l~~g 186 (443)
....+||||||| .+...+.+.|+. .+.|+|+||||.+.+. .||+|++|++|
T Consensus 150 ~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G 228 (255)
T d2hyda1 150 ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENG 228 (255)
T ss_dssp GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETT
T ss_pred CCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECC
Confidence 345789999999 344455555532 3679999999999985 59999999999
Q ss_pred eeEEEcCChhHHHH
Q psy208 187 RIDTYRGNYEAFDK 200 (443)
Q Consensus 187 ~i~~~~G~y~~y~~ 200 (443)
++.. .|++++..+
T Consensus 229 ~iv~-~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVE-TGTHRELIA 241 (255)
T ss_dssp EEEE-EECHHHHHH
T ss_pred EEEE-ECCHHHHHh
Confidence 9975 589877644
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.06 E-value=7.7e-10 Score=102.96 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHHHH
Q psy208 160 PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAFDK 200 (443)
Q Consensus 160 ~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y~~ 200 (443)
+.|||+||||.+.+.. ||+|++|++|+|. ..|++++..+
T Consensus 188 ~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 188 GRTTLVIAHRLSTIVD-ADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp TSEEEEECCSHHHHHH-CSEEEEEETTEEC-CCSCHHHHHH
T ss_pred CCEEEEEECCHHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 7899999999999965 9999999999996 5799887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.05 E-value=3.9e-10 Score=104.30 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------------------HHHHHHHHHhhhC
Q psy208 116 PARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------------------MAIIWLENYLQNW 159 (443)
Q Consensus 116 ~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------------------~~i~wL~~~L~~~ 159 (443)
..++.+++..+++.+ ..++++++||||||| ..+.-+.+.|++.
T Consensus 103 ~~~~~~~~~~~~l~~-~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~ 181 (231)
T d1l7vc_ 103 TELLNDVAGALALDD-KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQ 181 (231)
T ss_dssp HHHHHHHHHHTTCTT-TTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHh-HhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 346778888899985 468999999999998 1122233334556
Q ss_pred CCeEEEEecCHHHHhccCCcEEEEeCCeeEEEcCChhHH
Q psy208 160 PTTLLVVSHDRHFLDSVPTDIFHLHSQRIDTYRGNYEAF 198 (443)
Q Consensus 160 ~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~~~G~y~~y 198 (443)
+.|||+||||.+++..+||||+.|++|++. +.|+.++.
T Consensus 182 g~tii~vtHdl~~~~~~~dri~vl~~G~iv-~~G~~~ev 219 (231)
T d1l7vc_ 182 GLAIVMSSHDLNHTLRHAHRAWLLKGGKML-ASGRREEV 219 (231)
T ss_dssp TCEEEECCCCHHHHHHHCSBCCBEETTEEC-CCSBHHHH
T ss_pred CCEEEEEeCCHHHHHHHCCEEEEEECCEEE-EECCHHHH
Confidence 889999999999999999999999999996 56876554
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=3.7e-07 Score=86.20 Aligned_cols=50 Identities=30% Similarity=0.396 Sum_probs=41.9
Q ss_pred cCCCCCHHHHHHHHHHHH----hccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 392 FVGSLSGGQKSRVAFARM----CMAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 392 ~~~~LSgGekqRl~lA~a----l~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.+..+|+|||+.+.++.. ...+|.++++|||-+||+|.....|.+.|++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~ 269 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN 269 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHh
Confidence 456899999999877664 34577999999999999999999999998653
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.48 E-value=2e-07 Score=83.74 Aligned_cols=120 Identities=12% Similarity=0.072 Sum_probs=69.7
Q ss_pred hHHHHHHHccccccCCCCCcceEEecC------CceEEEEecccCCCC-chHHHHHHhccHHHHHHHHHHHHHHHHHhCC
Q psy208 18 SEFYCKALTLHLHLEGGMVSGQLRIPS------HISVLHVEQEVVGDD-TPAIDSVLECDTKRQNLLNREKTITQAINNG 90 (443)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~G~i~~~~------~~~i~~l~Q~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 90 (443)
=++|++.+.|.+.|+. |+|.+.+ .-+++|+||+..... .++.+. +... ..+
T Consensus 40 KSTLl~~i~gl~~p~~----G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t~~~~-l~~~--------------~~~--- 97 (200)
T d1sgwa_ 40 KTTLLKTISTYLKPLK----GEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDY-LKAV--------------ASL--- 97 (200)
T ss_dssp HHHHHHHHTTSSCCSE----EEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHH-HHHH--------------HHH---
T ss_pred HHHHHHHHhcccccCC----CEEEECCEehhHhcCcEEEEeecccCCCCcCHHHH-HHHH--------------HHh---
Confidence 3567777777776665 8998743 236999999976543 333322 2110 001
Q ss_pred CCChhhHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCChhhhhccCCCCChHHHH------------------------
Q psy208 91 TADANMSTELTQVFAELEAIEADKAPARASVILAGLGFTPEMQKRATKHFSGGWRK------------------------ 146 (443)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~~~L~~lgl~~~~~~~~~~~LSGGqr~------------------------ 146 (443)
.+...-+.++...+..+++.+ +++++.+||||||+
T Consensus 98 -------------------~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 98 -------------------YGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp -------------------TTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred -------------------cCCccCHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 001111234566677777753 45778999999999
Q ss_pred --H----HHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEe
Q psy208 147 --M----AIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLH 184 (443)
Q Consensus 147 --~----~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~ 184 (443)
. -.+.|.++.++.+.+||..+||. +.||++..|+
T Consensus 157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhhee
Confidence 1 22345555555444445555554 3688887774
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=3.3e-06 Score=82.55 Aligned_cols=51 Identities=31% Similarity=0.461 Sum_probs=43.0
Q ss_pred ccCCCCCHHHHHHHHHHHHh----ccCCCeEEEeCCCCCCCHHHHHHHHHHHccc
Q psy208 391 QFVGSLSGGQKSRVAFARMC----MAAPNFLVLDEPTNHLDIETIEALGKAINKY 441 (443)
Q Consensus 391 ~~~~~LSgGekqRl~lA~al----~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~~ 441 (443)
.++..||||||.+++||..+ ..+++++|||||++|||+..+..+.+.|.+.
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~ 382 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRH 382 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 45678999999998877544 4578899999999999999999999998643
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.2e-06 Score=76.26 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred EeeeEEEeCCCCceeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 279 LSEVNFEYVPGKPILTNVCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 279 ~~~l~~~y~~~~~il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++.|+..- -..+++.+|++.+| +++|+|+|||||||+|.+|.-.
T Consensus 4 l~~l~l~N---f~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 4 FRSLTLIN---WNGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEEEE---ETTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred eeEEEEEC---ccCEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 45555431 12567888888776 8999999999999999999643
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.61 E-value=0.00021 Score=64.52 Aligned_cols=42 Identities=17% Similarity=0.099 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHHcc
Q psy208 399 GQKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAINK 440 (443)
Q Consensus 399 GekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L~~ 440 (443)
.|-+++.-+.-.+.+..++|+||+..|=++..-..+..++.+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile 141 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE 141 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHH
Confidence 344444444444566779999999999999877776665543
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.58 E-value=0.0002 Score=65.07 Aligned_cols=39 Identities=13% Similarity=-0.023 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCCCHHHHHHHHHHH
Q psy208 400 QKSRVAFARMCMAAPNFLVLDEPTNHLDIETIEALGKAI 438 (443)
Q Consensus 400 ekqRl~lA~al~~~p~lLiLDEPTn~LD~~s~~~l~~~L 438 (443)
|-+|+.-+.-.+.+..++|+||+..|=++.....+..++
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~ 145 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWAC 145 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccEEeecccccCCChhhhhHHHHHh
Confidence 334443333345566799999999999988777665543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=4.4e-05 Score=64.53 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=2.4e-05 Score=66.65 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=25.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
.|.|+||+|+|||||++.++..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 489999999999999999999887665443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.29 E-value=5.5e-05 Score=65.64 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
|.+++|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=9.7e-05 Score=66.75 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=26.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 335 (443)
+|...+++|++|+|||||++.|.|...-..|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4788999999999999999999987766667664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.13 E-value=9.9e-05 Score=62.59 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|.+++|+||+||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999998765
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.12 E-value=7.1e-05 Score=63.76 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+++|+|++|||||||++-|...+...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 68999999999999998887766543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.10 E-value=0.00011 Score=62.45 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+|+|+||.|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.06 E-value=0.00014 Score=70.51 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=23.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
++.+..+.+.+|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444556689999999999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.03 E-value=0.00016 Score=61.13 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++|-.|+|+||.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998755
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.00013 Score=61.65 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.91 E-value=0.00019 Score=60.62 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368889999999999999999998544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.89 E-value=9.2e-05 Score=67.16 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEE
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRT 335 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~ 335 (443)
+|...+++|++|+|||||++.|.|...-..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4778899999999999999999998766667664
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.86 E-value=0.00028 Score=59.97 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
.+|+|.|+.||||||+++.|+-.+...
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999997655443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00024 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|.|+||.||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.77 E-value=0.00028 Score=59.40 Aligned_cols=23 Identities=39% Similarity=0.458 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|+|+||.||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.77 E-value=0.00032 Score=59.05 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
..+|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999998764
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.76 E-value=0.0003 Score=60.54 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|||.|+.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999976543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.00041 Score=61.62 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|.++.|+||+|||||||++.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999887543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.72 E-value=0.00031 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+.|+||.||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999997653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.71 E-value=0.00039 Score=57.52 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.0
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
.++.|+|+.|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999997754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.70 E-value=0.00032 Score=61.01 Aligned_cols=23 Identities=17% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999863
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.00053 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.64 E-value=0.00031 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
-+++|+|+.|||||||++.|.+-..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3799999999999999999988653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.56 E-value=0.00063 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=22.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
++|-+++|+||.||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999994
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.55 E-value=0.0072 Score=53.38 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~ 348 (443)
++.+++++||+|+||||.+-=|+-.+. ..| .+++.+.-+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g-------~kV~lit~D 43 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG-------KKVMFCAGD 43 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT-------CCEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEEec
Confidence 467899999999999998755665443 223 356666554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.00034 Score=60.19 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.53 E-value=0.00079 Score=55.99 Aligned_cols=24 Identities=46% Similarity=0.476 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|||||||++.+.+-..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.51 E-value=0.0006 Score=56.40 Aligned_cols=23 Identities=43% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|||||||++.+++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.50 E-value=0.00059 Score=60.84 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5899999999999999999753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.50 E-value=0.00058 Score=59.29 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|+|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987643
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.48 E-value=0.00066 Score=58.22 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.00071 Score=57.37 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.|+|+|+.|||||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998643
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.46 E-value=0.00087 Score=56.31 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 589999999999999999998643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00064 Score=56.78 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|=+++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999864
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.42 E-value=0.00059 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00075 Score=59.45 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|||.|+.|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999987654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.00072 Score=58.92 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~ 326 (443)
|+|+||+|||||||++.|+-.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.34 E-value=0.00055 Score=58.82 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|||+|+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00095 Score=56.63 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.29 E-value=0.00097 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997544
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0027 Score=56.42 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=25.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~ 348 (443)
.+++++||||+||||.+-=|+-.+. ..| .+++.+.-+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~D 46 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG-------KSVMLAAGD 46 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT-------CCEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CcEEEEecc
Confidence 5789999999999997755665443 233 356766654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.28 E-value=0.001 Score=56.86 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999863
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.28 E-value=0.00093 Score=56.80 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.|.|++||||||+.+.|+..+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998765
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.28 E-value=0.00088 Score=63.64 Aligned_cols=37 Identities=27% Similarity=0.487 Sum_probs=30.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEE
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTV 336 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 336 (443)
+..+.-+.|.|+.||||||||+.|++.++|..=-|++
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4556679999999999999999999999886544444
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0011 Score=57.39 Aligned_cols=23 Identities=13% Similarity=0.484 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
..++|+||+|||||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999988754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.24 E-value=0.001 Score=57.91 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.|||||||++.|+|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998864
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.23 E-value=0.00094 Score=57.83 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.-+|+|+||.||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999998643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.23 E-value=0.0011 Score=56.11 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|+|+.||||||+.++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.20 E-value=0.0011 Score=56.13 Aligned_cols=23 Identities=39% Similarity=0.406 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999999853
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.17 E-value=0.00077 Score=57.68 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|||+|+.|+|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.16 E-value=0.00097 Score=57.60 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997544
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0012 Score=57.16 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+++|+||.||||||+.+.|+..+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998755
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.13 E-value=0.0011 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.|+|+.||||||+-++|+-.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.12 E-value=0.001 Score=57.74 Aligned_cols=28 Identities=29% Similarity=0.322 Sum_probs=24.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+..+.++.|+||.||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567889999999999999999998654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.11 E-value=0.0013 Score=55.84 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.|.|+|+.||||||+-+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.00068 Score=57.59 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+|+.++|||||++.|+|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0019 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=24.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
|.+|+.+.|.||.|||||||+--++..
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998777643
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.07 E-value=0.0015 Score=56.04 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|.|+||.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0015 Score=56.39 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+||.||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.0014 Score=56.51 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++||+|+.||||||+.++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.98 E-value=0.0022 Score=54.25 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999988764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.97 E-value=0.0013 Score=57.00 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|-|+-||||||+++.|...+
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999998765
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.94 E-value=0.0014 Score=59.28 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
-+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.94 E-value=0.0016 Score=59.60 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|+|+|..|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38999999999999999999964
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.93 E-value=0.00059 Score=56.95 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.92 E-value=0.0025 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999977654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.91 E-value=0.002 Score=55.10 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997544
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0018 Score=55.27 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.|+||.||||||..+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999997543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.0022 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
+....+.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998863
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.87 E-value=0.0024 Score=53.64 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0021 Score=56.35 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|..|+|-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.0022 Score=54.91 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++.|+||.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.83 E-value=0.0022 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0029 Score=53.73 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977664
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.77 E-value=0.003 Score=53.29 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++++|+.|+|||||++.+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 4899999999999999987653
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0024 Score=56.42 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=23.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
++|-+|+|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999987654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=95.76 E-value=0.0024 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.=+++|+||.||||||+.+.|+--+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999644
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0028 Score=53.16 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++++|+.|+|||||++.+++-.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999877643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0021 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+|||+|+.|||||||+..|...
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 47999999999999999999754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0025 Score=55.68 Aligned_cols=23 Identities=43% Similarity=0.544 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|.||.||||||+-+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999997654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0046 Score=51.97 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI-----ISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~-----~~p~~G~ 333 (443)
+++|+|..|+|||||++-+.+- +.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 5899999999999999877653 3455553
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.70 E-value=0.0025 Score=55.98 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999963
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.68 E-value=0.0026 Score=55.87 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0024 Score=55.70 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|+|+|+.|||||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.66 E-value=0.0016 Score=57.92 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+.+|+|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998663
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.0037 Score=52.35 Aligned_cols=21 Identities=19% Similarity=0.577 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986664
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.59 E-value=0.0028 Score=56.26 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.57 E-value=0.0025 Score=53.83 Aligned_cols=23 Identities=48% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.|.+-.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997743
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.56 E-value=0.003 Score=54.07 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|||+|.-+||||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.53 E-value=0.0034 Score=55.61 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
+|-.|+|-|+-||||||++++|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6889999999999999999999876653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0042 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++-+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999876543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.0041 Score=52.43 Aligned_cols=29 Identities=31% Similarity=0.546 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI-----ISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~-----~~p~~G~ 333 (443)
+++|+|..|+|||||++-+.+- +.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 5999999999999999876552 2455554
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.0041 Score=51.91 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988763
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0042 Score=52.36 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0038 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999887643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0042 Score=52.10 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998765
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0047 Score=51.76 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.0049 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.42 E-value=0.0035 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
++|-+|.|+|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999874
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.38 E-value=0.0029 Score=56.28 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+..+++++||||+||||.+-=|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4457899999999999977555543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.36 E-value=0.0036 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0055 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0052 Score=51.97 Aligned_cols=23 Identities=39% Similarity=0.863 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 48999999999999999998754
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.33 E-value=0.0046 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+.|.||+|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999998653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.004 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+|||+|..||||||..+++...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999999743
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.30 E-value=0.0056 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.729 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++.+.+-
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0047 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+++|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 589999999999999999988643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.27 E-value=0.0045 Score=51.96 Aligned_cols=21 Identities=29% Similarity=0.868 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.27 E-value=0.004 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
..++.++||||+||||.+--|+-.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999887676544
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.005 Score=59.93 Aligned_cols=22 Identities=27% Similarity=0.745 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
|+|+|..|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0053 Score=52.02 Aligned_cols=22 Identities=41% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999887754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.24 E-value=0.0046 Score=53.61 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.23 E-value=0.0054 Score=52.14 Aligned_cols=30 Identities=23% Similarity=0.420 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCceE
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAGTR 334 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i 334 (443)
+++|+|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 589999999999999999887777888854
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.20 E-value=0.0065 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.18 E-value=0.005 Score=54.60 Aligned_cols=29 Identities=28% Similarity=0.519 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHH-HcCCCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKII-MGIISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l-~G~~~p~~G~ 333 (443)
++.|+|+.|+|||||++-+ .+...|+-|-
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 6899999999999999765 5666788884
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.0065 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|..|+|||||++.+.+-.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999887643
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.11 E-value=0.0067 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999976654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.11 E-value=0.0069 Score=50.83 Aligned_cols=28 Identities=21% Similarity=0.558 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI-----ISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~-----~~p~~G 332 (443)
+++|+|..|+|||||++-+.+- +.|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 5899999999999999876653 245555
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=95.10 E-value=0.0031 Score=53.72 Aligned_cols=23 Identities=48% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+++|+|+.|+|||||++.+.+-.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~~ 41 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIGE 41 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.06 E-value=0.0042 Score=55.24 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 306 ICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
+.+.||.|+||||+.++|+..+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 789999999999999999987665443
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.05 E-value=0.0057 Score=51.70 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
...+|++++|.|+=|||||||.|.++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999998765543
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.00 E-value=0.0069 Score=52.25 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3899999999999999987753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.0082 Score=50.42 Aligned_cols=22 Identities=18% Similarity=0.486 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888743
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.94 E-value=0.0034 Score=53.06 Aligned_cols=25 Identities=40% Similarity=0.369 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
++.|+|+.|+|||||++.+.+-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999865543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0076 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999877653
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.93 E-value=0.0063 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.+..+.|.||.|+|||||++.++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 3567899999999999999988754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.0057 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+|||.|+.|||||||.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 489999999999999999987764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.007 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
|++|.++.|.|+.|||||||.--++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999876653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.87 E-value=0.0065 Score=57.39 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHHcC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-++||+|+-|||||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHH
Confidence 36999999999999999888753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.85 E-value=0.0065 Score=54.07 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+|||+|..+||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.80 E-value=0.0086 Score=50.43 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999987653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0098 Score=49.91 Aligned_cols=29 Identities=28% Similarity=0.534 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI-----ISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~-----~~p~~G~ 333 (443)
+++|+|+.|+|||||++-+.+- +.|+-|.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~ 37 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLES 37 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCceec
Confidence 5899999999999999888753 3455454
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=94.75 E-value=0.0067 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
+.+.||.|+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999998653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.68 E-value=0.0095 Score=52.75 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
|++|..+.|.|++|||||||+.-++-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999866654
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.011 Score=49.33 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999877654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.63 E-value=0.0097 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.6
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
+++|+.+.|.|++|+|||||.--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.008 Score=55.71 Aligned_cols=31 Identities=35% Similarity=0.231 Sum_probs=27.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 297 CLGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 297 sl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=+.|-+|++.+|+|+.|+|||||+..|+...
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999988643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.63 E-value=0.0072 Score=53.55 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccC
Q psy208 302 LESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQH 348 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~ 348 (443)
...+++++||+|+||||.+-=|+-.+. ..| .+++++.-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g-------~kV~lit~D 49 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG-------FKVGLVGAD 49 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT-------CCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC-------CceEEEEee
Confidence 345789999999999998755554432 222 356766654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.60 E-value=0.0043 Score=57.63 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|||.|++||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999887654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.59 E-value=0.011 Score=50.20 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999877653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.57 E-value=0.012 Score=49.41 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999986544
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.53 E-value=0.01 Score=52.86 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=24.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
..+.|.||.|+||||+++.|+..++...+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999999987654443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.0074 Score=53.79 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+.|.||.|+||||+++.++-.
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.45 E-value=0.0062 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.0095 Score=52.45 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||.|+||||+.++|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 6789999999999999987543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.37 E-value=0.0068 Score=51.16 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=9.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|..|+|||||++.+++-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.014 Score=48.95 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.0098 Score=55.56 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.-+.++||.|||||+|.|.|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 346789999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.33 E-value=0.014 Score=48.95 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC-----CCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI-----ISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~-----~~p~~G~ 333 (443)
+++|+|..|+|||||++-+.+- +.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 6899999999999999987642 3455554
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.31 E-value=0.011 Score=50.60 Aligned_cols=29 Identities=34% Similarity=0.507 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc--CCCCCCce
Q psy208 305 RICIVGDNGAGKTTLLKIIMG--IISPTAGT 333 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G--~~~p~~G~ 333 (443)
++.|+|..|+|||||++-+.- ...||-|-
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~ 34 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI 34 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeeee
Confidence 589999999999999988732 34688884
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.28 E-value=0.013 Score=53.39 Aligned_cols=25 Identities=40% Similarity=0.554 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.-+.+.||.|||||+|.+.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEeeCCCCCCccHHHHHHHHHcC
Confidence 4488999999999999999998653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.27 E-value=0.013 Score=49.79 Aligned_cols=21 Identities=43% Similarity=0.773 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999975544
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.27 E-value=0.011 Score=50.19 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999977663
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.24 E-value=0.014 Score=49.79 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 499999999999999987664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.18 E-value=0.012 Score=51.55 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=22.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
+.+|+++.|.|+.|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986665
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.16 E-value=0.011 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||.|||||+|.+.|+...
T Consensus 43 vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 43 VLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhhcc
Confidence 7899999999999999999753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.011 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=23.1
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
|.+|..+.|.|+.|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999877753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.011 Score=51.84 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+.|.||.|+||||++++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999865
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.10 E-value=0.013 Score=53.02 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=26.5
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHHc
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G 325 (443)
-|+++..=+.+|+.+.|.|+.|+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444433478999999999999999999877763
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.013 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+|||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.04 E-value=0.013 Score=51.82 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKII 323 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l 323 (443)
+++|..+.|.||.|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 779999999999999999987544
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.96 E-value=0.014 Score=51.76 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q psy208 305 RICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G 325 (443)
+|||+|+-||||||..++|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.017 Score=49.52 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+++|+|+.|+|||||++-+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999766543
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.77 E-value=0.015 Score=53.10 Aligned_cols=28 Identities=32% Similarity=0.351 Sum_probs=23.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+..-+.|.||.|+|||+|.+.|++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3444588999999999999999998763
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.57 E-value=0.015 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.++..+.|.||.||||||++..+...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35678999999999999999999886543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=93.56 E-value=0.016 Score=52.28 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.+.||.|+|||||.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 6899999999999999999865
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.018 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+|+|-|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3789999999999999999986543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.42 E-value=0.018 Score=53.64 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.|||+|...+|||||++.|+|.-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999998864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.34 E-value=0.025 Score=48.63 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 8999999999999999999854
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=93.27 E-value=0.0098 Score=55.86 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=23.4
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCCCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGIISP 329 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~~p 329 (443)
.-+.|+|+-|+|||||+|.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45899999999999999999998865
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.09 E-value=0.026 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=++||||...||||||++.|++.-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred cEEEEECCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999863
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.06 E-value=0.019 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999865
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.01 E-value=0.026 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||.|+|||+|++.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999854
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.97 E-value=0.04 Score=47.11 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=24.1
Q ss_pred eeeeeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 292 ILTNVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 292 il~~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 344444444 67779999999999999986665
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=92.90 E-value=0.017 Score=51.61 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999998654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.73 E-value=0.047 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS-PT 330 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~-p~ 330 (443)
.++|+|.-.|||||||+.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 589999999999999999999763 54
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.70 E-value=0.028 Score=47.62 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC---CCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI---ISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~---~~p~~G 332 (443)
++.|+|..|+|||||++-+... ..||-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5899999999999999888543 345656
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.50 E-value=0.037 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHH
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+|+.+.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.32 E-value=0.036 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHcCC
Q psy208 304 SRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=++||||-..+|||||++.|++.-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999653
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.21 E-value=0.04 Score=50.47 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.++++|.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.20 E-value=0.037 Score=50.77 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=26.4
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
.=+.+-+|++++|+|+.|+|||||+..|+-.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999998777543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.09 E-value=0.028 Score=55.12 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
-+.++||.|||||-|.|.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.63 E-value=0.077 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.|.=+.|+|++|+|||||.-.+.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHH
Confidence 46679999999999999886655
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.62 E-value=0.059 Score=48.98 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=24.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
=|..|.++-|.||+|||||||+-.++...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999986665543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.21 E-value=0.065 Score=46.31 Aligned_cols=24 Identities=46% Similarity=0.666 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
.+||+|.-.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.06 E-value=0.076 Score=49.92 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
+|.|=|+=||||||+++.|+..+....+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~ 35 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSP 35 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSC
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCC
Confidence 5889999999999999999987655433
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.045 Score=48.35 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
++.|.|.=||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999988764
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.81 E-value=0.057 Score=46.94 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy208 306 ICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~ 324 (443)
+||+|.-++|||||+..|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 8999999999999999985
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=90.78 E-value=0.058 Score=51.36 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=25.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHHcCCC
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIMGIIS 328 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~ 328 (443)
++++..+.+.||.|+||||+.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35677899999999999999999998754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.59 E-value=0.094 Score=44.34 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
.-.|.-+.|.|++|+|||||.-.+.
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3456779999999999999875554
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.063 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+.|.||+|+||||+.++++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36788999999999999987654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.57 E-value=0.061 Score=50.11 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+.++||.|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 36899999999999999998765
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=90.36 E-value=0.063 Score=49.13 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=28.0
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCC
Q psy208 296 VCLGATLESRICIVGDNGAGKTTLLKIIMGIISPTA 331 (443)
Q Consensus 296 vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~ 331 (443)
.=+.|-+|++++|+|+.|+|||||+..+.-...-+.
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~ 95 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQN 95 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTT
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHhhhcccC
Confidence 345788999999999999999999976554433333
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.35 E-value=0.054 Score=49.45 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcC
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-++.|.++-|.||+|||||||+-.++..
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 3678999999999999999997666543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.19 E-value=0.074 Score=46.21 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
-+.+.||.|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48899999999999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.11 E-value=0.066 Score=48.77 Aligned_cols=19 Identities=42% Similarity=0.837 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy208 306 ICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~ 324 (443)
+||+|.-|||||||+..|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHH
Confidence 7999999999999999883
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.80 E-value=0.063 Score=48.92 Aligned_cols=94 Identities=22% Similarity=0.314 Sum_probs=54.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHHcCCCCCCceEEEcCceEEEEeccCcccccccchhHHHHHHHhCCCCCHHHHHHH
Q psy208 299 GATLESRICIVGDNGAGKTTLLKIIMGIISPTAGTRTVHRNLKFGYFSQHHVDQLDMNLRCVQLLEAAFPGKPQEEYRRQ 378 (443)
Q Consensus 299 ~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~ig~~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (443)
=|+.|.++-|.||.|||||||.-.++....-..| .+.|++-+. .+++ .+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~--------~v~yiDtE~--~~~~---------------------~~ 101 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGG--------TCAFIDAEH--ALDP---------------------VY 101 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CEEEEESSC--CCCH---------------------HH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCC--------EEEEEECCc--cCCH---------------------HH
Confidence 3678999999999999999999877765432222 355666543 1221 12
Q ss_pred HhcCCCChhhhhccCCCCCHHHHHHHHHHHHhcc--CCCeEEEeCCCCCC
Q psy208 379 LGGFGVSGDLALQFVGSLSGGQKSRVAFARMCMA--APNFLVLDEPTNHL 426 (443)
Q Consensus 379 L~~~gl~~~~~~~~~~~LSgGekqRl~lA~al~~--~p~lLiLDEPTn~L 426 (443)
+..+|++.+.+ .+..-.-+|.+ +.++..|+. +++++|+|=-++..
T Consensus 102 a~~~Gvd~d~i--~~~~~~~~E~~-~~~~~~l~~~~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 102 ARALGVNTDEL--LVSQPDNGEQA-LEIMELLVRSGAIDVVVVDSVAALT 148 (268)
T ss_dssp HHHTTCCGGGC--EEECCSSHHHH-HHHHHHHHTTTCCSEEEEECTTTCC
T ss_pred HHHhCCCchhE--EEEcCCCHHHH-HHHHHHHHhcCCCcEEEEecccccc
Confidence 33445543321 11112234544 344455543 57888888777654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.76 E-value=0.081 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.|.||.|||||-|++.++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999999998643
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.65 E-value=0.081 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPT 330 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~ 330 (443)
+|+|=|+=||||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 58999999999999999999877554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.24 E-value=0.086 Score=48.21 Aligned_cols=23 Identities=43% Similarity=0.423 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHH---HcCCC
Q psy208 306 ICIVGDNGAGKTTLLKII---MGIIS 328 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l---~G~~~ 328 (443)
+||+|..|||||||+..| +|.+.
T Consensus 9 i~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 9 IGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCccc
Confidence 899999999999999888 55544
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.21 E-value=0.083 Score=49.56 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+|+|=|+=||||||+++.|...+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 58899999999999999998654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.91 E-value=0.11 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=19.6
Q ss_pred CEEEEECCCCCcHHHHHHHHHc
Q psy208 304 SRICIVGDNGAGKTTLLKIIMG 325 (443)
Q Consensus 304 e~i~iiG~NGsGKSTLlk~l~G 325 (443)
.+++|+|.-|.|||||.+.+..
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998864
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=88.70 E-value=0.11 Score=44.91 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~ 326 (443)
+||+|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 899999999999999988763
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.48 E-value=0.098 Score=50.12 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q psy208 305 RICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~ 324 (443)
.+.|+|+.||||||+++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999986443
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.77 E-value=0.14 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+.|||+.|+|||+++.-|+-.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHH
Confidence 3689999999999999888753
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.57 E-value=0.15 Score=44.87 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy208 306 ICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~ 324 (443)
++++|.-.+|||||+..|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999994
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=87.54 E-value=0.16 Score=45.92 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCc
Q psy208 305 RICIVGDNGAGKTTLLKIIMGIISPTAG 332 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~~p~~G 332 (443)
+++|+|-..+|||||++.|.|......|
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred EEEEEecCccchhhhhhhhhccceEEEC
Confidence 4999999999999999999997654443
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.83 E-value=0.11 Score=47.79 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.1
Q ss_pred eeeEEEeCCCEEEEECCCCCcHHHHHHHHH
Q psy208 295 NVCLGATLESRICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 295 ~vsl~i~~Ge~i~iiG~NGsGKSTLlk~l~ 324 (443)
|.=+.+-+|++++|+|+.|+|||||+.-++
T Consensus 60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 344688999999999999999999976443
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.82 E-value=0.15 Score=47.57 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=22.6
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 298 LGATLESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 298 l~i~~Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
....+| .+.++||.|+|||.|.+.|++.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 444444 45567999999999999999864
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.81 E-value=0.16 Score=46.01 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGI 326 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~ 326 (443)
-+.|||+.|+|||+++.-++-.
T Consensus 41 n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999888753
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=86.58 E-value=0.06 Score=44.66 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhCCCeEEEEecCHHHHhccCCcEEEEeCCeeEE-EcCChhHH
Q psy208 147 MAIIWLENYLQNWPTTLLVVSHDRHFLDSVPTDIFHLHSQRIDT-YRGNYEAF 198 (443)
Q Consensus 147 ~~i~wL~~~L~~~~~tviiVSHDr~fLd~v~~~i~~l~~g~i~~-~~G~y~~y 198 (443)
....+|.+.|++.+.++|+++|++.. ...|++++.++++++.. -+.|++.+
T Consensus 117 ~~~~~l~~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~~v~~~nrd~~ 168 (178)
T d1ye8a1 117 KFRDLVRQIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHHHHHHHHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred HHHHHHHHHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEEEECCccHHHH
Confidence 45578888888889999999999864 56788898898998854 34565543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.01 E-value=0.17 Score=44.22 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHH
Q psy208 306 ICIVGDNGAGKTTLLKIIM 324 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~ 324 (443)
+||+|.-++|||||+..|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHH
Confidence 8999999999999998773
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.84 E-value=0.17 Score=46.93 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q psy208 305 RICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 36788999999999999998765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.20 E-value=0.21 Score=47.27 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q psy208 306 ICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 306 i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.++||.|+|||-|.|.|+...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6788999999999999999765
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.82 E-value=0.23 Score=44.92 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=26.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHHcCCCCCCce
Q psy208 301 TLESRICIVGDNGAGKTTLLKIIMGIISPTAGT 333 (443)
Q Consensus 301 ~~Ge~i~iiG~NGsGKSTLlk~l~G~~~p~~G~ 333 (443)
.+--.+.|.||-++|||||+++|+.++ +.-|.
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~ 133 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGC 133 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEE
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHh-cchhh
Confidence 344578999999999999999999987 44443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=82.83 E-value=0.27 Score=45.38 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=17.1
Q ss_pred CCCEEEEECCCCCcHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLl 320 (443)
.|++..+.|.+|+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999974
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=82.57 E-value=0.2 Score=39.18 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.6
Q ss_pred EeCCCEEEEECCCCCcHHHHH
Q psy208 300 ATLESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 300 i~~Ge~i~iiG~NGsGKSTLl 320 (443)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 457899999999999999543
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=81.61 E-value=0.3 Score=45.20 Aligned_cols=19 Identities=37% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCEEEEECCCCCcHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLl 320 (443)
.|++..+.|.+|+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 4788999999999999973
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.53 E-value=0.38 Score=41.28 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHcCC
Q psy208 303 ESRICIVGDNGAGKTTLLKIIMGII 327 (443)
Q Consensus 303 Ge~i~iiG~NGsGKSTLlk~l~G~~ 327 (443)
+.-+.+.||+|+||||+.+.++..+
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4468899999999999999888743
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=81.21 E-value=0.3 Score=44.33 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=13.5
Q ss_pred EEEEECCCCCcHHHHH
Q psy208 305 RICIVGDNGAGKTTLL 320 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLl 320 (443)
.+.|.|+-||||||.|
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 4778899999999854
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.12 E-value=0.35 Score=44.77 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCcHHHHH
Q psy208 302 LESRICIVGDNGAGKTTLL 320 (443)
Q Consensus 302 ~Ge~i~iiG~NGsGKSTLl 320 (443)
.|++..+.|.+|+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 5788899999999999986
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=80.83 E-value=0.29 Score=43.88 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=13.5
Q ss_pred EEEEECCCCCcHHHHH
Q psy208 305 RICIVGDNGAGKTTLL 320 (443)
Q Consensus 305 ~i~iiG~NGsGKSTLl 320 (443)
-+.|+|+-||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4689999999999754
|