Psyllid ID: psy2386

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
Protein Sequence
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccEEEEEccccHHHHHcccccccccccccccEEEEEccccHHHHHHHHHHHHHccccEEEcccccccHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEcHHHHcccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHHHHccccccccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHEccccHHccccHHcccEEEEcccccHHHHHHHHHHHHHccccEEEEccccccHHcccccccHHHcccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEHHHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccEEEEcHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAilgnkkhcldfnaeehpiafqvgdnepkKLAKSAKIIQKWgydeinlncgcpsnrvqngFFGAILMTKPLLVSDCIKAMRDSVEIDITVkhrigiddinsyDFVRDFVGTVSSAGCRTFIVHARNAFLKklnpkqnrkipilkynfvynlkkdfpeleIIINGGIKTKKEIDLHLNYIDGVMLGreayknpflmsnfdlnyysnlpqykiptriDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKnikgsnkfkqilskpnlltidNFQFFLNTLNIP
Flexible Loop (DISEMBL)
mnltdrhcrmFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIafqvgdnepkKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIditvkhrigiddinSYDFVRDFVGTVSSAGCRTFIVHARNaflkklnpkqnrkipiLKYNFVYNLKKDFPELEIIINggiktkkeiDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Low Complexity Region (SEG)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLnnnkikninSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Disordered region (IsUnstruct)
******HCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL***
Disordered Region (DISOPRED)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Disordered Region (DISEMBL)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Disordered Region (DISPRO)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLNIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	311	2.2.26 [Sep-21-2011]
Q87L85	326	tRNA-dihydrouridine synth	yes	N/A	0.922	0.880	0.506	4e-84
Q8CWK7	326	tRNA-dihydrouridine synth	yes	N/A	0.926	0.883	0.501	6e-84
Q9CL29	327	tRNA-dihydrouridine synth	yes	N/A	0.926	0.880	0.503	1e-83
P72872	334	Probable tRNA-dihydrourid	N/A	N/A	0.974	0.907	0.487	2e-83
Q88KX0	336	tRNA-dihydrouridine synth	yes	N/A	0.922	0.854	0.496	3e-83
Q9KUX9	327	tRNA-dihydrouridine synth	yes	N/A	0.926	0.880	0.481	2e-82
Q9I048	332	tRNA-dihydrouridine synth	yes	N/A	0.977	0.915	0.479	3e-82
P44794	327	tRNA-dihydrouridine synth	yes	N/A	0.926	0.880	0.493	3e-82
Q8FB30	331	tRNA-dihydrouridine synth	yes	N/A	0.926	0.870	0.498	3e-81
P32695	330	tRNA-dihydrouridine synth	N/A	N/A	0.926	0.872	0.498	3e-81

>sp|Q87L85|DUSA_VIBPA tRNA-dihydrouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=dusA PE=3 SV=1

 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/294 (50%), Positives = 207/294 (70%), Gaps = 7/294 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ TDRHCR FHR +T+ + LYTEM TT AI+  K   L +N EEHP+A Q+G + P+ L
Sbjct: 13  LDWTDRHCRYFHRLMTKETLLYTEMVTTGAIIHGKGDFLAYNEEEHPLALQLGGSNPEDL 72

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           AK AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V++ +TVK
Sbjct: 73  AKCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDVPVTVK 132

Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
            RIGIDD +SY+F+ DFV  VS   GC  F +HAR A+L  L+PK+NR+IP L Y   Y 
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
           LK+DF  L I INGG+K+ +E  +HL ++DGVM+GREAY++P+L+++ D   + SN P  
Sbjct: 193 LKQDFSHLTIAINGGVKSLEEAKVHLQHLDGVMIGREAYQSPYLLASVDQELFGSNAP-- 250

Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            +  R +I+  M  YI  QL   K   +  ITRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 -VKKRSEIVEEMYPYIEAQL--AKGAYLGHITRHMLGLFQNMPGARQWRRHISE 301

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
Vibrio parahaemolyticus (taxid: 670)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q8CWK7|DUSA_VIBVU tRNA-dihydrouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=dusA PE=3 SV=2

 Score =  310 bits (795), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 147/293 (50%), Positives = 203/293 (69%), Gaps = 5/293 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ TDRHCR FHR +T+ + LYTEM TT AI+  K   L +N EEHP+A Q+G + P+ L
Sbjct: 13  LDWTDRHCRYFHRLMTKETLLYTEMITTGAIIHGKGDFLAYNQEEHPVALQLGGSNPQDL 72

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           A  AK+  + GYDE+NLN GCPS+RVQNG FGA LM +P LV+DC+ AM++ V+I +TVK
Sbjct: 73  ATCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPQLVADCVAAMKEVVDIPVTVK 132

Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
            RIGIDD +SY+F+ DFV  VS   GC  F +HAR A+L  L+PK+NR+IP L Y   Y 
Sbjct: 133 TRIGIDDQDSYEFLTDFVSIVSEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LKKDF  L I INGG+K+ +E   HL ++DGVM+GREAY++P+L+++ D   + +  Q  
Sbjct: 193 LKKDFSHLTIAINGGVKSLEEAKEHLQHLDGVMIGREAYQSPYLLASVDQELFGS--QSP 250

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
           I  R  I+  M  YI QQL N     +  +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 IKKRRQIVEEMYPYIEQQLANGAY--LGHMTRHMLGLFQNMPGARQWRRHISE 301

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Vibrio vulnificus (taxid: 672)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9CL29|DUSA_PASMU tRNA-dihydrouridine synthase A OS=Pasteurella multocida (strain Pm70) GN=dusA PE=3 SV=1

 Score =  310 bits (794), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 147/292 (50%), Positives = 204/292 (69%), Gaps = 4/292 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ T RHCR FHRQ ++++ LYTEM TT AI+  K   L+F+  E+P+A Q+G ++P +L
Sbjct: 19  LDWTTRHCRYFHRQFSQHALLYTEMVTTGAIIHAKYDHLEFSPAENPVALQLGGSDPTQL 78

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           A+ AKI Q+ GY EINLN GCPS+RVQNG FGA LM K  LV+DC+ AM+  V I +TVK
Sbjct: 79  AQCAKIAQQRGYTEINLNVGCPSDRVQNGMFGACLMAKADLVADCVSAMQTEVSIPVTVK 138

Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
            RIGIDD++SY+F+ +FV  V  AGC+ FI+HAR A+L  L+PK+NR+IP L Y  VY L
Sbjct: 139 TRIGIDDLDSYEFLCEFVQKVHEAGCQEFIIHARKAWLSGLSPKENREIPPLDYERVYQL 198

Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
           K+DFP L + INGGIKT +E+  HL Y+DGVM+GREAY+NP L+   D   +   P   +
Sbjct: 199 KRDFPHLLMSINGGIKTLEEMQQHLQYMDGVMVGREAYQNPSLLGYIDQALFD--PTCPV 256

Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            T  + + +M  YI QQL+      +N + RHMLG  ++ KG+ ++++ LS+
Sbjct: 257 VTPREAVEKMFPYIEQQLSQGVY--LNHVVRHMLGAFQSCKGARQWRRYLSE 306

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Pasteurella multocida (strain Pm70) (taxid: 272843)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P72872|DUS2_SYNY3 Probable tRNA-dihydrouridine synthase 2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dus2 PE=3 SV=1

 Score =  309 bits (791), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 152/312 (48%), Positives = 214/312 (68%), Gaps = 9/312 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRH R F RQ+TR++ LYTEM T QAIL G+++  L+F+ EE P+A Q+G ++P+ 
Sbjct: 19  MDHTDRHFRYFLRQLTRHTLLYTEMITAQAILHGDRQRLLNFSPEEKPVALQLGGDDPQL 78

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA+ A+I Q WGYDEINLN GCPS+RVQ+G FGA LM +P LV+ C+ AM+ +VEI +TV
Sbjct: 79  LAECARIGQDWGYDEINLNVGCPSDRVQSGNFGACLMAQPDLVAQCVSAMQKAVEIPVTV 138

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID  +SY+ +  FV  V++AGC+ F VHAR A+L+ L+PK+NR IP L+Y  VY 
Sbjct: 139 KHRIGIDHRDSYEDLVHFVEIVANAGCQRFTVHARKAWLQGLSPKENRTIPPLRYEDVYQ 198

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY--SNLPQ 237
           LKKDFP+L I INGGI   ++I  HL+++D VM+GR AY+NP+L +  D + Y  +NL  
Sbjct: 199 LKKDFPQLLIEINGGITQTEQIQQHLSHVDAVMVGRAAYENPYLFATVDRDIYHKTNL-- 256

Query: 238 YKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
             +P+R +II RM+ Y+ ++L +     +N ITRH+L L      +  +++ LS   LL 
Sbjct: 257 --VPSRAEIIERMLPYVEERLRHG--DRLNQITRHLLSLFNGQPRAKFWRRTLSDSTLLA 312

Query: 298 IDNFQFFLNTLN 309
               +     L 
Sbjct: 313 SAGPELLQTALQ 324

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q88KX0|DUSA_PSEPK tRNA-dihydrouridine synthase A OS=Pseudomonas putida (strain KT2440) GN=dusA PE=3 SV=1

 Score =  308 bits (790), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 146/294 (49%), Positives = 201/294 (68%), Gaps = 7/294 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKH-CLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR F R ++R + LYTEM TT A+L N  H  L  +A EHP+A Q+G + P  
Sbjct: 26  MDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEHPLALQLGGSVPAD 85

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA  A++ ++ GYDE+NLN GCPS+RVQN   GA LM  P LV+DC+KAMRD+V   +TV
Sbjct: 86  LAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCVKAMRDAVSTPVTV 145

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGI+  +SY  + DFVG V  AGCR+F VHAR A L+ L+PK+NR+IP L+Y+    
Sbjct: 146 KHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKENREIPPLRYDIAAQ 205

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
           LK+DFP+LEI++NGGIKT  E   HL   DGVMLGREAY NP+L++  D   + S+ P  
Sbjct: 206 LKRDFPDLEIVLNGGIKTLDECQAHLETFDGVMLGREAYHNPYLLAEVDQQLFGSDAP-- 263

Query: 239 KIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            + +R + + ++  YI   + +     ++ +TRH+LGL +  KG+ +F+Q+LS 
Sbjct: 264 -VVSRSEALAQLRPYIVAHMESGGA--MHHVTRHILGLAQGFKGARRFRQLLSA 314

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9KUX9|DUSA_VIBCH tRNA-dihydrouridine synthase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dusA PE=3 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 141/293 (48%), Positives = 204/293 (69%), Gaps = 5/293 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ TDRHCR FHR ++  + LYTEM TT AI+  +   L +N EEHP+A Q G + PK L
Sbjct: 13  LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           A  AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR  V+I +TVK
Sbjct: 73  AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132

Query: 121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
            RIGIDD +SY+F+  F+ TV+   GC  F +HAR A+L  L+PK+NR+IP L Y   Y 
Sbjct: 133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           +K+DFP L I +NGG+K+ +E  LHL ++DGVM+GREAY+NP+L++  D   +    +  
Sbjct: 193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
           +  R  +I+ M+ YI ++L+     ++  +TRHMLGL +N+ G+ ++++ +S+
Sbjct: 251 VKKRSQVIHEMMPYIERELSQG--THLGHMTRHMLGLFQNMPGARQWRRHISE 301

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q9I048|DUSA_PSEAE tRNA-dihydrouridine synthase A OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusA PE=3 SV=1

 Score =  305 bits (781), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 150/313 (47%), Positives = 208/313 (66%), Gaps = 9/313 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR F RQ++R++ LYTEM TT A+L G+++  L ++  EHP+A Q+G + P +
Sbjct: 22  MDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLALQLGGSVPAE 81

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA  A++ ++ GYDE+NLN GCPS+RVQ+   GA LM  P LV+DC+KAM D+VEI +TV
Sbjct: 82  LAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTV 141

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGI+  +SY  + DFVG V  AGCR+F VHAR A L+ L+PK+NR++P L+Y     
Sbjct: 142 KHRIGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQ 201

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYY-SNLPQY 238
           LKKDFP+LEI++NGGIKT +    HL   DGVMLGREAY NP+L++  D   + S  P  
Sbjct: 202 LKKDFPDLEIVLNGGIKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPL 261

Query: 239 KIPTRIDIINRMILYI-RQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
              +R + + R+  YI R Q     + +   +TRH+LGL +   GS +F+Q+LS      
Sbjct: 262 ---SRSEALLRLRPYIERHQAEGGAMHH---VTRHILGLAQGFPGSRRFRQLLSVDVHKA 315

Query: 298 IDNFQFFLNTLNI 310
            D  + F   L +
Sbjct: 316 ADPLRVFDQALEL 328

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P44794|DUSA_HAEIN tRNA-dihydrouridine synthase A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dusA PE=3 SV=1

 Score =  305 bits (780), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 144/292 (49%), Positives = 205/292 (70%), Gaps = 4/292 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ T RHCR FHRQ ++++ LYTEM T  AI+  K   LDF+ +E+P+A Q+G ++P++L
Sbjct: 19  LDWTTRHCRYFHRQFSKHALLYTEMVTAPAIIHAKYDHLDFDLQENPVALQLGGSDPEQL 78

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
              AK+ ++ GY EINLN GCPS+RVQNG FGA LM K  LV+DC++ M+ +V+I +TVK
Sbjct: 79  KYCAKLAEERGYHEINLNVGCPSDRVQNGMFGACLMAKADLVADCVEQMQSAVKIPVTVK 138

Query: 121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
            RIGID+++SY+F+ DF+  V   GC+ FI+HAR A+L  L+PK+NR+IP L Y  VY L
Sbjct: 139 TRIGIDELDSYEFLCDFIEKVQGKGCQEFIIHARKAWLSGLSPKENREIPPLDYIRVYQL 198

Query: 181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
           K+DFP L I INGGIKT +E+  HL Y+DGVM+GREAY+NP L+   D   +   P   I
Sbjct: 199 KRDFPHLTIAINGGIKTIEEMKQHLQYVDGVMVGREAYQNPSLLGQIDQALFD--PNAPI 256

Query: 241 PTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            T  + +  M+ YI QQL+     ++N I RH+LG  +N KG+ ++++ LS+
Sbjct: 257 VTAHEAVESMLPYIEQQLSQG--IHLNHIVRHILGAFQNCKGARQWRRYLSE 306

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8FB30|DUSA_ECOL6 tRNA-dihydrouridine synthase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dusA PE=3 SV=1

 Score =  302 bits (773), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ TDRHCR F R ++R + LYTEM TT AI+  K   L ++ EEHP+A Q+G ++P  L
Sbjct: 20  LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 79

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           A+ AK+ +  GYDEINLN GCPS+RVQNG FGA LM    LV+DC+KAMRD V I +TVK
Sbjct: 80  AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 139

Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
            RIGIDD +SY+F+ DF+ TVS  G C  FI+HAR A+L  L+PK+NR+IP L Y  VY 
Sbjct: 140 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 199

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP L + INGGIK+ +E   HL ++DGVM+GREAY+NP +++  D   + +     
Sbjct: 200 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 259

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            P  + ++  M  YI ++L+      +  ITRHMLGL + I G+ ++++ LS+
Sbjct: 260 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 308

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P32695|DUSA_ECOLI tRNA-dihydrouridine synthase A OS=Escherichia coli (strain K12) GN=dusA PE=3 SV=3

 Score =  301 bits (772), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/293 (49%), Positives = 201/293 (68%), Gaps = 5/293 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           ++ TDRHCR F R ++R + LYTEM TT AI+  K   L ++ EEHP+A Q+G ++P  L
Sbjct: 19  LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78

Query: 61  AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
           A+ AK+ +  GYDEINLN GCPS+RVQNG FGA LM    LV+DC+KAMRD V I +TVK
Sbjct: 79  AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138

Query: 121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
            RIGIDD +SY+F+ DF+ TVS  G C  FI+HAR A+L  L+PK+NR+IP L Y  VY 
Sbjct: 139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP L + INGGIK+ +E   HL ++DGVM+GREAY+NP +++  D   + +     
Sbjct: 199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
            P  + ++  M  YI ++L+      +  ITRHMLGL + I G+ ++++ LS+
Sbjct: 259 DP--VAVVRAMYPYIERELSQGTY--LGHITRHMLGLFQGIPGARQWRRYLSE 307

Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
409407337	329	hypothetical protein GWL_29420 [Herbaspi	0.993	0.939	0.598	1e-115
415944436	323	tRNA-dihydrouridine synthase A [Herbaspi	0.993	0.956	0.601	1e-114
300312882	357	hypothetical protein Hsero_3587 [Herbasp	0.993	0.865	0.598	1e-113
398832210	328	tRNA dihydrouridine synthase A [Herbaspi	0.990	0.939	0.596	1e-113
399017469	322	tRNA dihydrouridine synthase A [Herbaspi	0.993	0.959	0.601	1e-112
152980796	344	tRNA-dihydrouridine synthase A [Janthino	0.983	0.889	0.622	1e-112
134095593	338	tRNA-dihydrouridine synthase A [Herminii	0.983	0.905	0.612	1e-111
340788618	338	tRNA-dihydrouridine synthase A [Collimon	0.987	0.908	0.607	1e-111
395761105	317	tRNA-dihydrouridine synthase A [Janthino	0.993	0.974	0.594	1e-110
445495230	341	tRNA-dihydrouridine synthase A [Janthino	0.971	0.885	0.596	1e-108

>gi|409407337|ref|ZP_11255788.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103] gi|386433088|gb|EIJ45914.1| hypothetical protein GWL_29420 [Herbaspirillum sp. GW103]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 188/314 (59%), Positives = 241/314 (76%), Gaps = 5/314 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    LDF+ +EHP+A Q+G +EP  
Sbjct: 2   MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 61

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA SA++ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 62  LAHSARLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVTV 121

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDD+ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y 
Sbjct: 122 KHRIGIDDVQSYDFVRDFVGQIAEAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQ 181

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP+LEI+INGGIKT  EID HL ++DGVMLGREAY NP+LM++FD  YY  LP  +
Sbjct: 182 LKQDFPDLEILINGGIKTLPEIDEHLRHVDGVMLGREAYHNPYLMASFDARYYGELPGGR 241

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
            P+R ++I  M+ YI++QL    +N +   +NSITRHMLGL+  + G+  F+Q LS    
Sbjct: 242 QPSRAEVIAAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSKR 301

Query: 296 LTIDNFQFFLNTLN 309
           L + +    L  L 
Sbjct: 302 LALGDPALLLEALQ 315

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|415944436|ref|ZP_11556234.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30] gi|407758516|gb|EKF68332.1| tRNA-dihydrouridine synthase A [Herbaspirillum frisingense GSF30]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 189/314 (60%), Positives = 239/314 (76%), Gaps = 5/314 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    LDF+ +EHP+A Q+G +EP  
Sbjct: 2   MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 61

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 62  LAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPALVADCVKAMRDAVSIDVTV 121

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID + SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y 
Sbjct: 122 KHRIGIDQVESYDFVRDFVGQIADAGCKTFIVHARNAILKGLSPKENREIPPLKYHYAYQ 181

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LKKDFPELEI+INGGIKT  EID HL ++DGVMLGREAY NP+LM+ FD  YY +L   +
Sbjct: 182 LKKDFPELEILINGGIKTLPEIDEHLLHVDGVMLGREAYHNPYLMAAFDARYYGDLEGGR 241

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
            P+R ++I  M+ YI++QL    +N +   +NSITRHMLGL+  + G+  F+Q LS    
Sbjct: 242 QPSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLLTGMPGARAFRQTLSDSKR 301

Query: 296 LTIDNFQFFLNTLN 309
           L + +    L  L 
Sbjct: 302 LALGDPALLLEALQ 315

Source: Herbaspirillum frisingense GSF30

Species: Herbaspirillum frisingense

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300312882|ref|YP_003776974.1| hypothetical protein Hsero_3587 [Herbaspirillum seropedicae SmR1] gi|300075667|gb|ADJ65066.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/314 (59%), Positives = 237/314 (75%), Gaps = 5/314 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    LDF+ +EHP+A Q+G +EP  
Sbjct: 33  MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFDEQEHPVALQLGGSEPAD 92

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA SAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 93  LAHSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 152

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID++ SYDFVRDFVG ++ AGC+TFIVHARNA LK L+PK+NR+IP LKY++ Y 
Sbjct: 153 KHRIGIDEVESYDFVRDFVGQIAEAGCQTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 212

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LKKDFP LEI+INGGIKT  EID HL ++DGVMLGREAY NP+LM+ FD  YY+ L    
Sbjct: 213 LKKDFPSLEILINGGIKTLPEIDEHLKHVDGVMLGREAYHNPYLMAGFDARYYAALEGGL 272

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
             +R ++I  M+ YI++QL    +N +   +NSITRHMLGLM  + G+  F+Q LS    
Sbjct: 273 QRSRAEVIEAMLPYIKRQLELHGDNGRGLRLNSITRHMLGLMAGMPGARAFRQTLSDSKR 332

Query: 296 LTIDNFQFFLNTLN 309
           L + +    L  L 
Sbjct: 333 LALGDPALLLEALQ 346

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398832210|ref|ZP_10590374.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522] gi|398223747|gb|EJN10082.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. YR522]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/315 (59%), Positives = 237/315 (75%), Gaps = 7/315 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    LDFN EEHP+A Q+G +EP  
Sbjct: 1   MDWTDRHCRLFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 60

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++A++ Q+WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61  LAQAARLGQQWGYDEINLNCGCPSERVQKGAFGACLMGEPTLVADCVKAMRDAVSIDVTV 120

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID + SYDFVRDFVG ++ AGC TFIVHARNA LK L+PK+NR+IP LKY++ Y 
Sbjct: 121 KHRIGIDSVESYDFVRDFVGQIADAGCHTFIVHARNAILKGLSPKENREIPPLKYDYAYQ 180

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP+LEI+INGGIKT  EID HL ++DGVMLGREAY NP+LM+ FD  YY +LP  +
Sbjct: 181 LKRDFPQLEILINGGIKTVAEIDAHLQHVDGVMLGREAYHNPYLMAGFDARYYGDLPHGR 240

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKN--INSITRHMLGLMKNIKGSNKFKQILSKP 293
             +R  +I  M+ YIR+QL    +N +     +NSITRHMLGL+  + G+  F+Q LS  
Sbjct: 241 QASREQVIAAMLPYIRRQLALHGDNGRGGGLRLNSITRHMLGLLAGMPGARAFRQTLSDS 300

Query: 294 NLLTIDNFQFFLNTL 308
             L   + +     L
Sbjct: 301 KRLAEGDPELLHEAL 315

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399017469|ref|ZP_10719661.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444] gi|398103343|gb|EJL93514.1| tRNA dihydrouridine synthase A [Herbaspirillum sp. CF444]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 189/314 (60%), Positives = 234/314 (74%), Gaps = 5/314 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    L+FN EEHP+A Q+G +EP  
Sbjct: 1   MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLYGDVGRHLNFNEEEHPVALQLGGSEPVD 60

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 61  LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMAEPTLVADCVKAMRDAVSIDVTV 120

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDD+ SYDFVRDFVG ++ AG +TFIVHARNA LK L+PK+NR+IP LKY++ Y 
Sbjct: 121 KHRIGIDDVESYDFVRDFVGKIAEAGSKTFIVHARNAVLKGLSPKENREIPPLKYDYAYR 180

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFPELEI+INGGIKT  EID HL ++DGVMLGREAY NPFLM+ FD  YY+ L    
Sbjct: 181 LKRDFPELEILINGGIKTVAEIDEHLKHVDGVMLGREAYHNPFLMAGFDARYYAELDGGV 240

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
              R ++I  M+ Y   QL    +  K   +NSITRHMLGLM  + G+  F+Q LS    
Sbjct: 241 QANRSEVIEAMMAYASAQLALHGDGGKGLRLNSITRHMLGLMAGMPGARAFRQTLSDSKR 300

Query: 296 LTIDNFQFFLNTLN 309
           L + +    +  L+
Sbjct: 301 LALGDPALLMEALS 314

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. Marseille] gi|151280873|gb|ABR89283.1| tRNA-dihydrouridine synthase [Janthinobacterium sp. Marseille]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/315 (62%), Positives = 232/315 (73%), Gaps = 9/315 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCRMFHRQITR++WLYTEM TT A+L G+    LDFN EEHP+A Q+G +EP  
Sbjct: 24  MDWTDRHCRMFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFNEEEHPVALQLGGSEPAD 83

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LAKSAK+ ++WGYDE+NLNCGCPS RVQ G FGA LM +  LV+DC+KAMRD+V ID+TV
Sbjct: 84  LAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVADCVKAMRDAVSIDVTV 143

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDDI SYDFVRDFVGT++ AGC TFIVHARNA LK L+PK+NR+IP L+Y F Y 
Sbjct: 144 KHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSPKENREIPPLRYEFAYQ 203

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LKKDFP LEIIINGG KT  EID HL ++DGVMLGREAY NPFLMS FD  YY +    K
Sbjct: 204 LKKDFPALEIIINGGTKTVAEIDTHLQHVDGVMLGREAYHNPFLMSTFDARYYGDDATSK 263

Query: 240 IPTRIDIINRMILYIRQQLN-NNKIK-----NINSITRHMLGLMKNIKGSNKFKQILSKP 293
             TR +++  MI YI  QL  + K +      +NSITRHMLGLM  +  S  F+Q LS  
Sbjct: 264 --TRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGLMAGLPNSRAFRQTLSDS 321

Query: 294 NLLTIDNFQFFLNTL 308
             L + +    L  L
Sbjct: 322 KKLALGDPDLLLQAL 336

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134095593|ref|YP_001100668.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans] gi|133739496|emb|CAL62547.1| tRNA-dihydrouridine synthase A [Herminiimonas arsenicoxydans]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/315 (61%), Positives = 234/315 (74%), Gaps = 9/315 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCRMFHRQITR++W YTEM TT A+L G+    LDFN EEHP+A Q+G +EP  
Sbjct: 17  MDWTDRHCRMFHRQITRHTWFYTEMVTTGALLHGDVSRHLDFNHEEHPVALQLGGSEPAD 76

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LAKSAK+ ++WGYDEINLNCGCPS RVQ G FGA LM +  LV+DC+KAMRD+V+ID+TV
Sbjct: 77  LAKSAKLGEQWGYDEINLNCGCPSERVQKGAFGACLMNEAALVADCVKAMRDAVQIDVTV 136

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDDI SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP L+Y F Y 
Sbjct: 137 KHRIGIDDIASYDFVRDFVGTVAEAGCNTFIVHARNAVLKGLSPKENREIPPLRYEFAYQ 196

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP+LEIIINGGIKT  EID HL ++DGVMLGREAY NP+LMS FD  YY ++   K
Sbjct: 197 LKQDFPQLEIIINGGIKTLAEIDTHLVHVDGVMLGREAYHNPYLMSAFDARYYGDIAAPK 256

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKN------INSITRHMLGLMKNIKGSNKFKQILSKP 293
             +R  +++ M+ YIR QL  +          +NSITRHMLGLM  +  +  F+Q LS  
Sbjct: 257 --SRAQVLHAMLPYIRAQLELHGKSEKGGGLRLNSITRHMLGLMAGLPNARGFRQSLSDS 314

Query: 294 NLLTIDNFQFFLNTL 308
             L + +    L  L
Sbjct: 315 KKLALGDPDLLLQAL 329

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340788618|ref|YP_004754083.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331] gi|340553885|gb|AEK63260.1| tRNA-dihydrouridine synthase A [Collimonas fungivorans Ter331]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/313 (60%), Positives = 233/313 (74%), Gaps = 6/313 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHRQITR++WLYTEM TT A+L G+    LDF+  EHP+A Q+G +E   
Sbjct: 19  MDWTDRHCRVFHRQITRHTWLYTEMVTTGALLHGDVPRHLDFSDVEHPVALQLGGSESAD 78

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LAKSAK+ Q+WGYDEINLNCGCPS RVQ G FGA LM +  LV+DC+KAMRD+V ID+TV
Sbjct: 79  LAKSAKLGQEWGYDEINLNCGCPSERVQKGAFGACLMAEAELVADCVKAMRDAVSIDVTV 138

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID   SY+FVRDFVGTV+ AGC+TFIVHARNA LK L+PK+NR+IP LKY + Y 
Sbjct: 139 KHRIGIDKTESYEFVRDFVGTVAQAGCQTFIVHARNAILKGLSPKENREIPPLKYEYAYQ 198

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           L +DFPELEIIING IKT +EID HL Y+DGVMLGREAY NP+LM++FD  YY       
Sbjct: 199 LARDFPELEIIINGAIKTTEEIDFHLQYVDGVMLGREAYHNPYLMADFDSRYY-GAADAA 257

Query: 240 IPTRIDIINRMILYIRQQL----NNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNL 295
             TR ++I  M+ YIRQQL    ++ K   +NSITRHMLGLM  + G+  F+Q LS    
Sbjct: 258 PKTRAEVIEAMLPYIRQQLALHGHDGKGLRLNSITRHMLGLMAGVPGAKSFRQALSDSKR 317

Query: 296 LTIDNFQFFLNTL 308
           L + + +   + L
Sbjct: 318 LALGDPRLLTDAL 330

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395761105|ref|ZP_10441774.1| tRNA-dihydrouridine synthase A [Janthinobacterium lividum PAMC 25724]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/316 (59%), Positives = 237/316 (75%), Gaps = 7/316 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR FHR+ITR++WLYTEM TT A++ G+ +  L FN EEHP+A Q+G ++P  
Sbjct: 2   MDWTDRHCRKFHREITRHTWLYTEMVTTGALVYGDVERHLRFNEEEHPVALQLGGSDPTD 61

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA SAK+ Q+WGYDE+NLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD V+ID+TV
Sbjct: 62  LATSAKLGQQWGYDEVNLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRDVVDIDVTV 121

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDD  SYDFVRDFVGTV+ AGC+TFIVHARNA LK L+PK+NR++P LKY++ Y 
Sbjct: 122 KHRIGIDDSESYDFVRDFVGTVADAGCKTFIVHARNAILKGLSPKENREVPPLKYDYAYR 181

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP+ E IINGGIKT  EIDLHL ++DGVMLGREAY NP+LM+ FD  YY +     
Sbjct: 182 LKRDFPQFEFIINGGIKTLDEIDLHLQHLDGVMLGREAYHNPYLMAQFDQRYYGD--DTP 239

Query: 240 IPTRIDIINRMILYIRQQLNNNKIK-NINSITRHMLGLMKNIKGSNKFKQILSKPNLLTI 298
           + TR  ++  MI YIR QL     +  +NS+TRHMLGLM+N+ G+  F+Q LS    L  
Sbjct: 240 VKTREQVLEVMIPYIRVQLEKEAGRLKLNSVTRHMLGLMQNLPGARGFRQTLSDSKKLAS 299

Query: 299 DNFQFFLNT---LNIP 311
            + +  L     L++P
Sbjct: 300 GDPRLLLEAAARLSLP 315

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|445495230|ref|ZP_21462274.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01] gi|444791391|gb|ELX12938.1| tRNA-dihydrouridine synthase A [Janthinobacterium sp. HH01]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 183/307 (59%), Positives = 230/307 (74%), Gaps = 5/307 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR+FHR I++++WLYTEM TT A++ G+ +  L FN EEHP+A Q+G ++P  
Sbjct: 26  MDWTDRHCRVFHRHISQHTWLYTEMVTTGALVYGDVERHLRFNDEEHPVALQLGGSDPAD 85

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA SAK+ +KWGYDEINLNCGCPS RVQ G FGA LM +P LV+DC+KAMRD+V ID+TV
Sbjct: 86  LATSAKLGEKWGYDEINLNCGCPSERVQKGAFGACLMAEPQLVADCVKAMRDAVSIDVTV 145

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHR+GID   SYDFVRDFVGTV+ AGC TFIVHARNA LK L+PK+NR+IP LKY F Y 
Sbjct: 146 KHRVGIDQTESYDFVRDFVGTVAEAGCTTFIVHARNAILKGLSPKENREIPPLKYEFAYQ 205

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP+ EIIINGGIKT+ EID HL ++DGVMLGREAY NPF+M+ FD  YY +    K
Sbjct: 206 LKRDFPDFEIIINGGIKTEAEIDEHLKHLDGVMLGREAYHNPFVMAGFDQRYYGDSRAPK 265

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKN--INSITRHMLGLMKNIKGSNKFKQILSKPNLLT 297
             +R ++I  MI YI+ QL  +      +N+ITRHMLGLM  + G+  F+Q+LS    L 
Sbjct: 266 --SREEVIEAMIPYIQAQLALHGAHGLKLNTITRHMLGLMTGLPGARAFRQVLSDSKKLA 323

Query: 298 IDNFQFF 304
           + +    
Sbjct: 324 LGDAHLL 330

Source: Janthinobacterium sp. HH01

Species: Janthinobacterium sp. HH01

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	311
UNIPROTKB|Q9KUX9	327	dusA "tRNA-dihydrouridine synt	0.926	0.880	0.481	2e-72
TIGR_CMR|VC_0379	327	VC_0379 "TIM-barrel protein, y	0.926	0.880	0.481	2e-72
UNIPROTKB|P32695	330	dusA "tRNA-dihydrouridine synt	0.926	0.872	0.498	8.6e-72
UNIPROTKB|Q48A03	335	CPS_0353 "tRNA-dihydrouridine	0.926	0.859	0.465	2.6e-70
TIGR_CMR|CPS_0353	335	CPS_0353 "TIM-barrel protein,	0.926	0.859	0.465	2.6e-70
UNIPROTKB|Q607T6	360	MCA1669 "tRNA-dihydrouridine s	0.929	0.802	0.474	1.8e-69
UNIPROTKB|Q884G7	336	dusA "tRNA-dihydrouridine synt	0.922	0.854	0.486	2.1e-68
UNIPROTKB|Q8EAJ0	335	dusA "tRNA-dihydrouridine synt	0.926	0.859	0.462	1.9e-67
TIGR_CMR|SO_3912	335	SO_3912 "TIM-barrel protein, y	0.926	0.859	0.462	1.9e-67
UNIPROTKB|Q83D40	353	CBU_0904 "tRNA-dihydrouridine	0.926	0.815	0.488	2.8e-66

UNIPROTKB|Q9KUX9 dusA "tRNA-dihydrouridine synthase A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 141/293 (48%), Positives = 201/293 (68%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TDRHCR FHR ++  + LYTEM TT AI+  +   L +N EEHP+A Q G + PK L
Sbjct:    13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
             A  AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR  V+I +TVK
Sbjct:    73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132

Query:   121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
              RIGIDD +SY+F+  F+ TV+   GC  F +HAR A+L  L+PK+NR+IP L Y   Y 
Sbjct:   133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
             +K+DFP L I +NGG+K+ +E  LHL ++DGVM+GREAY+NP+L++  D   +    +  
Sbjct:   193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250

Query:   240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
             +  R  +I+ M+ YI ++L          +TRHMLGL +N+ G+ ++++ +S+
Sbjct:   251 VKKRSQVIHEMMPYIERELSQGTHLGH--MTRHMLGLFQNMPGARQWRRHISE 301

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0379 VC_0379 "TIM-barrel protein, yjbN family" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 141/293 (48%), Positives = 201/293 (68%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TDRHCR FHR ++  + LYTEM TT AI+  +   L +N EEHP+A Q G + PK L
Sbjct:    13 LDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGSNPKDL 72

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
             A  AK+ Q+ GYDEINLN GCPS+RVQNG FGA LM +P LV++C+ AMR  V+I +TVK
Sbjct:    73 AHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDIPVTVK 132

Query:   121 HRIGIDDINSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
              RIGIDD +SY+F+  F+ TV+   GC  F +HAR A+L  L+PK+NR+IP L Y   Y 
Sbjct:   133 TRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDYPRAYQ 192

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
             +K+DFP L I +NGG+K+ +E  LHL ++DGVM+GREAY+NP+L++  D   +    +  
Sbjct:   193 IKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL--ETP 250

Query:   240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
             +  R  +I+ M+ YI ++L          +TRHMLGL +N+ G+ ++++ +S+
Sbjct:   251 VKKRSQVIHEMMPYIERELSQGTHLGH--MTRHMLGLFQNMPGARQWRRHISE 301

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P32695 dusA "tRNA-dihydrouridine synthase A" [Escherichia coli K-12 (taxid:83333)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 146/293 (49%), Positives = 199/293 (67%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TDRHCR F R ++R + LYTEM TT AI+  K   L ++ EEHP+A Q+G ++P  L
Sbjct:    19 LDWTDRHCRYFLRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAAL 78

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
             A+ AK+ +  GYDEINLN GCPS+RVQNG FGA LM    LV+DC+KAMRD V I +TVK
Sbjct:    79 AQCAKLAEARGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVK 138

Query:   121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
              RIGIDD +SY+F+ DF+ TVS  G C  FI+HAR A+L  L+PK+NR+IP L Y  VY 
Sbjct:   139 TRIGIDDQDSYEFLCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQ 198

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
             LK+DFP L + INGGIK+ +E   HL ++DGVM+GREAY+NP +++  D   + +     
Sbjct:   199 LKRDFPHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDA 258

Query:   240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
              P  + ++  M  YI ++L          ITRHMLGL + I G+ ++++ LS+
Sbjct:   259 DP--VAVVRAMYPYIERELSQGTYLGH--ITRHMLGLFQGIPGARQWRRYLSE 307

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA;IMP

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA;IMP

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q48A03 CPS_0353 "tRNA-dihydrouridine synthase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 136/292 (46%), Positives = 199/292 (68%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TD+H R F+R +T+++ LYTEM TT AIL  K   L +N  EHP+  Q+G ++ K +
Sbjct:    26 LDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAM 85

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
              + AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+  M+ +  I +TVK
Sbjct:    86 TECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVK 145

Query:   121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
              RIGIDD++SY+F+  F+  VS A CR FI+HAR A+L  L+PKQNR +P L Y+ VY +
Sbjct:   146 SRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI 205

Query:   181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
             K DF +LE+ INGGIKT  E + HL +IDGVM+GRE Y +P+++++ D   Y +    K+
Sbjct:   206 KNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQS-DTIKL 264

Query:   241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
              +R ++I+ M+ YI + +          + RHMLGL   + G+ KF+Q LS+
Sbjct:   265 -SRSEVIDLMVPYIDETIANGGRAWH--VLRHMLGLCNGLSGARKFRQHLSE 313

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0353 CPS_0353 "TIM-barrel protein, yjbN family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 136/292 (46%), Positives = 199/292 (68%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TD+H R F+R +T+++ LYTEM TT AIL  K   L +N  EHP+  Q+G ++ K +
Sbjct:    26 LDWTDKHSRYFYRLMTQHTVLYTEMVTTGAILRGKGDYLSYNDAEHPLVLQLGGSDVKAM 85

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
              + AKI +++GYDE+N+N GCPS+RVQNG FGA LM +P LV+ C+  M+ +  I +TVK
Sbjct:    86 TECAKIAEQYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQMQSATNIPVTVK 145

Query:   121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
              RIGIDD++SY+F+  F+  VS A CR FI+HAR A+L  L+PKQNR +P L Y+ VY +
Sbjct:   146 SRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHARKAWLTGLSPKQNRDVPPLDYDRVYQI 205

Query:   181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
             K DF +LE+ INGGIKT  E + HL +IDGVM+GRE Y +P+++++ D   Y +    K+
Sbjct:   206 KNDFKDLEVSINGGIKTFSEANEHLQHIDGVMIGREIYNSPYMLADADNEIYQS-DTIKL 264

Query:   241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
              +R ++I+ M+ YI + +          + RHMLGL   + G+ KF+Q LS+
Sbjct:   265 -SRSEVIDLMVPYIDETIANGGRAWH--VLRHMLGLCNGLSGARKFRQHLSE 313

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q607T6 MCA1669 "tRNA-dihydrouridine synthase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
 Identities = 139/293 (47%), Positives = 202/293 (68%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
             M+ TDRHCR F R I+R++ LYTEM TT AIL G+++  L F+  EHP+A Q+G ++P+ 
Sbjct:    36 MDWTDRHCRFFLRLISRHTLLYTEMVTTAAILHGDRERLLGFHPAEHPLAIQLGGSDPEA 95

Query:    60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
             LA+ AKI +  G+DE+NLN GCPS RVQ G FGA LM +P  V+DC++AM ++V + +TV
Sbjct:    96 LAECAKIAEFRGFDEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRAMCEAVSVPVTV 155

Query:   120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
             K RIGIDD +SY+ +  FV  V+ AGCRTFIVHAR A+L+ L+PK+NR+ P L+Y+ V  
Sbjct:   156 KTRIGIDDRDSYEDLLHFVTIVAEAGCRTFIVHARKAWLQGLSPKENRQTPPLRYDVVRR 215

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
             LK + PEL I++NGGI+T  E + HL++ DGVM+GR AY NP+L++  D   Y +    +
Sbjct:   216 LKSELPELAIVLNGGIQTLDEAERHLSWCDGVMIGRAAYHNPYLLAEADRRCYGH-SDVR 274

Query:   240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
               TR ++I   + Y+R +L         ++TRH+LGL     G  ++++ +S+
Sbjct:   275 PRTREEVIEDFMPYVRNELSKGSRLH--ALTRHILGLYHATPGGKRWRRHISE 325

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q884G7 dusA "tRNA-dihydrouridine synthase A" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 142/292 (48%), Positives = 192/292 (65%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
             M+ TD HCR F R ++  + LYTEM TT A+L G+++  L  +  EHP+A Q+G +    
Sbjct:    26 MDWTDHHCRYFMRLLSSQALLYTEMVTTGALLHGDRERFLRHDETEHPLALQLGGSTAAG 85

Query:    60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
             LA  A++ +  GYDE+NLN GCPS+RVQN   GA LM  P LV+DC+KAMRD+V I +TV
Sbjct:    86 LAACARLAEAAGYDEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKAMRDAVGIPVTV 145

Query:   120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
             KHRIGI+  +SY  + DFVGTV  AGC++F VHAR A L+ L+PK+NR IP L+Y+ V  
Sbjct:   146 KHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVVAQ 205

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
             LK DFPELEI++NGGIKT ++   HL   DGVMLGREAY NP+L++  D   + ++    
Sbjct:   206 LKTDFPELEIVLNGGIKTLEQCSEHLQTFDGVMLGREAYHNPYLLAQVDQQLFGSVAP-- 263

Query:   240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILS 291
             + +R   +  M  YI   +          +TRHMLGL     G+ +F+Q+LS
Sbjct:   264 VISRHAALESMRPYIAAHIASGGNMHH--VTRHMLGLGLGFPGARRFRQLLS 313

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EAJ0 dusA "tRNA-dihydrouridine synthase A" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 135/292 (46%), Positives = 197/292 (67%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TDRH R F R ++  + LYTEM TT AIL  +   L +N EEHP+A Q+G + P +L
Sbjct:    22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
             A+ AK+  + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+  V+I +TVK
Sbjct:    82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141

Query:   121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
              RIGID+ +SY+F+  F+ TV + GC  FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct:   142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201

Query:   181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
             K+D+P L I INGGI + ++   HL ++DGVM+GREAY+NP++++  D     +     +
Sbjct:   202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTKA--V 259

Query:   241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
              +R  +I  M+ YI   L          ITRHM+GL + + G+  +++ LS+
Sbjct:   260 MSREAVIEAMLPYIEAHLQVGGRLNH--ITRHMIGLFQGLPGARAWRRYLSE 309

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_3912 SO_3912 "TIM-barrel protein, yjbN family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 135/292 (46%), Positives = 197/292 (67%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
             ++ TDRH R F R ++  + LYTEM TT AIL  +   L +N EEHP+A Q+G + P +L
Sbjct:    22 LDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGSNPVEL 81

Query:    61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK 120
             A+ AK+  + GYDE+NLN GCPS+RVQNG FGA LM +P LV++C+ AM+  V+I +TVK
Sbjct:    82 ARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDIPVTVK 141

Query:   121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL 180
              RIGID+ +SY+F+  F+ TV + GC  FI+HAR A+L+ L+PK+NR+IP L Y+ VY L
Sbjct:   142 TRIGIDEQDSYEFLTHFIDTVMAKGCGEFIIHARKAWLQGLSPKENREIPPLDYDRVYQL 201

Query:   181 KKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKI 240
             K+D+P L I INGGI + ++   HL ++DGVM+GREAY+NP++++  D     +     +
Sbjct:   202 KRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGSTKA--V 259

Query:   241 PTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
              +R  +I  M+ YI   L          ITRHM+GL + + G+  +++ LS+
Sbjct:   260 MSREAVIEAMLPYIEAHLQVGGRLNH--ITRHMIGLFQGLPGARAWRRYLSE 309

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q83D40 CBU_0904 "tRNA-dihydrouridine synthase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
 Identities = 145/297 (48%), Positives = 198/297 (66%)

Query:     1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK-HCLDFNAEEHPIAFQVGDNEPKK 59
             M  TDRH RMF RQI+R+  LYTEM TT A+L  K+  CLD++ EEHP+A QVG ++P+ 
Sbjct:    37 MGCTDRHFRMFMRQISRHVLLYTEMVTTGALLKGKQWRCLDYSPEEHPLALQVGGSDPQS 96

Query:    60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
             LA  A++ ++ G+DEINLN GCPS RV  G FGA L+ +  LV+DC+ AM   V I ++V
Sbjct:    97 LALCARLAEEKGFDEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAAMSAEVNIPVSV 156

Query:   120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
             K R G+DD +SY+ +  FV TV+ AGCR FI+HAR A+LK L+P +NR +P L Y  VY 
Sbjct:   157 KTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHARKAWLKGLSPAENRTVPPLAYPMVYQ 216

Query:   180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD-LN--YYS-NL 235
             LK+DFP LEIIINGGIKT + I+ HL  +DGVM+GREAY NP   + FD L+   +S  +
Sbjct:   217 LKQDFPGLEIIINGGIKTIEAINDHLREVDGVMIGREAYANPLFCAAFDDLSKPVFSLGV 276

Query:   236 PQYK-IP-TRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQIL 290
                K  P T   ++ R + Y+ +QL         ++TRH+ GL +   G+ K+++ L
Sbjct:   277 ADKKQTPLTPKRVLLRYLPYMAKQLANGVPLY--AMTRHLNGLFQGQPGAKKWRRFL 331

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8ZKH4	DUSA_SALTY	1, ., -, ., -, ., -	0.4982	0.9260	0.8674	yes	N/A
Q6GD38	DUS_STAAS	1, ., -, ., -, ., -	0.2188	0.8745	0.8292	yes	N/A
Q8NYV4	DUS_STAAW	1, ., -, ., -, ., -	0.2188	0.8745	0.8292	yes	N/A
Q9KUX9	DUSA_VIBCH	1, ., -, ., -, ., -	0.4812	0.9260	0.8807	yes	N/A
Q9CL29	DUSA_PASMU	1, ., -, ., -, ., -	0.5034	0.9260	0.8807	yes	N/A
Q87AY2	DUSA_XYLFT	1, ., -, ., -, ., -	0.4102	0.9774	0.9156	yes	N/A
P67717	DUS_STAAN	1, ., -, ., -, ., -	0.2222	0.8745	0.8292	yes	N/A
P44794	DUSA_HAEIN	1, ., -, ., -, ., -	0.4931	0.9260	0.8807	yes	N/A
Q88KX0	DUSA_PSEPK	1, ., -, ., -, ., -	0.4965	0.9228	0.8541	yes	N/A
Q87L85	DUSA_VIBPA	1, ., -, ., -, ., -	0.5068	0.9228	0.8803	yes	N/A
Q8EAJ0	DUSA_SHEON	1, ., -, ., -, ., -	0.4657	0.9260	0.8597	yes	N/A
Q8PFF8	DUSA_XANAC	1, ., -, ., -, ., -	0.4334	0.9196	0.8562	yes	N/A
Q8P3X4	DUSA_XANCP	1, ., -, ., -, ., -	0.4368	0.9196	0.8537	yes	N/A
P67716	DUS_STAAM	1, ., -, ., -, ., -	0.2222	0.8745	0.8292	yes	N/A
Q884G7	DUSA_PSESM	1, ., -, ., -, ., -	0.4897	0.9228	0.8541	yes	N/A
Q5HJT5	DUS_STAAC	1, ., -, ., -, ., -	0.2188	0.8745	0.8292	yes	N/A
Q8ZJ14	DUSA_YERPE	1, ., -, ., -, ., -	0.4812	0.9260	0.8347	yes	N/A
Q8FB30	DUSA_ECOL6	1, ., -, ., -, ., -	0.4982	0.9260	0.8700	yes	N/A
Q7VNV2	DUSA_HAEDU	1, ., -, ., -, ., -	0.5136	0.9228	0.8885	yes	N/A
Q8CWK7	DUSA_VIBVU	1, ., -, ., -, ., -	0.5017	0.9260	0.8834	yes	N/A
Q7UBC5	DUSA_SHIFL	1, ., -, ., -, ., -	0.4948	0.9260	0.8727	yes	N/A
Q9PGB5	DUSA_XYLFA	1, ., -, ., -, ., -	0.4070	0.9774	0.8941	yes	N/A
Q9I048	DUSA_PSEAE	1, ., -, ., -, ., -	0.4792	0.9774	0.9156	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	311
PRK11815	333	PRK11815, PRK11815, tRNA-dihydrouridine synthase A	1e-174
TIGR00742	318	TIGR00742, yjbN, tRNA dihydrouridine synthase A	1e-128
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	1e-78
pfam01207	309	pfam01207, Dus, Dihydrouridine synthase (Dus)	1e-74
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	8e-73
TIGR00737	319	TIGR00737, nifR3_yhdG, putative TIM-barrel protein	1e-32
PRK10550	312	PRK10550, PRK10550, tRNA-dihydrouridine synthase C	6e-10
PRK10415	321	PRK10415, PRK10415, tRNA-dihydrouridine synthase B	5e-09

>gnl|CDD|236991 PRK11815, PRK11815, tRNA-dihydrouridine synthase A; Provisional

 Score =  485 bits (1250), Expect = e-174
 Identities = 157/292 (53%), Positives = 213/292 (72%), Gaps = 5/292 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           M+ TDRHCR FHR ++R++ LYTEM TT AI+ G+++  L F+ EEHP+A Q+G ++P  
Sbjct: 19  MDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPAD 78

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++AK+ + WGYDEINLN GCPS+RVQNG FGA LM +P LV+DC+KAM+D+V I +TV
Sbjct: 79  LAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTV 138

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGIDD +SY+F+ DFV TV+ AGC TFIVHAR A+LK L+PK+NR+IP L Y+ VY 
Sbjct: 139 KHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYR 198

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK+DFP L I INGGIKT +E   HL ++DGVM+GR AY NP+L++  D   +       
Sbjct: 199 LKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA--P 256

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
             +R +++  M+ YI + L       +N ITRHMLGL + + G+  +++ LS
Sbjct: 257 PLSRSEVLEAMLPYIERHLAQG--GRLNHITRHMLGLFQGLPGARAWRRYLS 306

Length = 333

>gnl|CDD|129825 TIGR00742, yjbN, tRNA dihydrouridine synthase A

 Score =  368 bits (947), Expect = e-128
 Identities = 153/297 (51%), Positives = 215/297 (72%), Gaps = 5/297 (1%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           ++ TDRH R F R +++++ LYTEM T +AI+ G+KK  L F+ EE P+A Q+G ++P  
Sbjct: 9   LDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPND 68

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LAK AKI +K GYDEINLN GCPS+RVQNG FGA LM    LV+DC+KAM+++V I +TV
Sbjct: 69  LAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTV 128

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           KHRIGID ++SY+F+ DFV  VS  GC+ FIVHAR A+L  L+PK+NR+IP L+Y  VY 
Sbjct: 129 KHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQ 188

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LKKDFP L I INGGIK  ++I  HL+++DGVM+GREAY+NP+L++N D   ++     +
Sbjct: 189 LKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREIFN--ETDE 246

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLL 296
           I TR +I+ +M+ YI + L+     ++N ITRH+LGL +   G+ ++++ LS+    
Sbjct: 247 ILTRKEIVEQMLPYIEEYLSQG--LSLNHITRHLLGLFQGKPGAKQWRRYLSENAPK 301

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). It represents a distinct subset by a set of shared unique motifs, a conserved pattern of insertions/deletions relative to other nifR3 homologs, and by subclustering based on cross-genome bidirectional best hits. Members are found in species as diverse as the proteobacteria, a spirochete, a cyanobacterium, and Deinococcus radiodurans. NifR3 itself, a protein of unknown function associated with nitrogen regulation in Rhodobacter capsulatus, is not a member of this branch. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Protein synthesis, tRNA and rRNA base modification]. Length = 318

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score =  242 bits (619), Expect = 1e-78
 Identities = 97/301 (32%), Positives = 154/301 (51%), Gaps = 21/301 (6%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKK--HCLDFNAEEHPIAFQVGDNEP 57
             +TD   R   R++  Y  LYTEM + +A+L G KK    LD   EE P+A Q+G ++P
Sbjct: 19  AGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDP 78

Query: 58  KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-ID 116
           + LA++AKI ++ G D I+LNCGCPS +V  G  GA L+  P L+++ +KAM ++V  I 
Sbjct: 79  ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIP 138

Query: 117 ITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN 175
           +TVK R+G DD    D +   +  +   AG     VH R      L P          ++
Sbjct: 139 VTVKIRLGWDDD---DILALEIARILEDAGADALTVHGRTRAQGYLGP--------ADWD 187

Query: 176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYYS 233
           ++  LK+  P + +I NG IK+ ++    L Y   DGVM+GR A  NP+L    D     
Sbjct: 188 YIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETG 247

Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKP 293
            L    +   +DI   +  ++   L     K +  + +H+   +K + G+ + ++ L+K 
Sbjct: 248 ELLPPTLAEVLDI---LREHLELLLEYYGKKGLRRLRKHLGYYLKGLPGARELRRALNKA 304

Query: 294 N 294
            
Sbjct: 305 E 305

Length = 323

>gnl|CDD|216365 pfam01207, Dus, Dihydrouridine synthase (Dus)

 Score =  231 bits (590), Expect = 1e-74
 Identities = 84/298 (28%), Positives = 144/298 (48%), Gaps = 25/298 (8%)

Query: 3   LTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEH--PIAFQVGDNEPKK 59
           +TD   R   R+      + TEM T +A L   K+  L     E   P+A Q+G ++P  
Sbjct: 8   VTDLPFRRLVREYGAGDLVVTEMVTAKAQLRPEKQRELMLPELEEPTPLAVQLGGSDPAL 67

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++AK++   G D I++N GCP+ +V  G  GA L+  P LV+  +KA+  +V+I +TV
Sbjct: 68  LAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTV 127

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           K RIG D+  S++   +    V  AG +   VH R          QN + P   ++ +  
Sbjct: 128 KIRIGWDE--SHENAVEIARRVEDAGAQALTVHGR-------TRAQNYEGPA-DWDAIKQ 177

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPFLMSNFDLNYY----S 233
           +K+    + +I NG I   ++    L+Y   DGVM+GR A  NP+L   F   +      
Sbjct: 178 VKQAVS-IPVIANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWL---FAEQHTVKTGE 233

Query: 234 NLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
             P+  +    +I+   + Y+ +    +K   +    +H+   +K   G+ + ++ L+
Sbjct: 234 FDPRPPLAEEAEIVLEHLSYLEEFYGEDKG--LRHARKHLAWYLKGFPGAAELRRELN 289

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria. Length = 309

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score =  223 bits (572), Expect = 8e-73
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 20/232 (8%)

Query: 3   LTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKK 59
           +TD   R+  R+      +YTEM + +A+L   +     L  N EE P+  Q+G ++P+ 
Sbjct: 10  VTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPET 68

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++AKI+++ G D I+LN GCPS +V  G  GA L+  P LV++ ++A+R++V I +TV
Sbjct: 69  LAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTV 128

Query: 120 KHRIGIDD-INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
           K R+G DD   + +  +     +  AG     VH R          + R      ++++ 
Sbjct: 129 KIRLGWDDEEETLELAK----ALEDAGASALTVHGRTR--------EQRYSGPADWDYIA 176

Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFD 228
            + K+   + +I NG I + ++    L    +DGVM+GR A  NP+L     
Sbjct: 177 EI-KEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIK 227

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

>gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family

 Score =  122 bits (308), Expect = 1e-32
 Identities = 73/263 (27%), Positives = 117/263 (44%), Gaps = 50/263 (19%)

Query: 11  FHRQITRY--SWLYTEMFTTQAIL---GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAK 65
           F R +  Y       EM +++AI+         LD   +E PI+ Q+  ++P  +A++AK
Sbjct: 23  FRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAK 82

Query: 66  IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI 125
           I ++ G D I++N GCP  ++     G+ L+  P L+   +KA+ D+V+I +TVK RIG 
Sbjct: 83  INEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGW 142

Query: 126 DD--INSYDFVRDFVGTVSSAGCRTFIVHARNA-----------FLKKLNPKQNRKIPIL 172
           DD  IN+ +  R        AG +   +H R              + ++  KQ  +IP  
Sbjct: 143 DDAHINAVEAAR----IAEDAGAQAVTLHGRTRAQGYSGEANWDIIARV--KQAVRIP-- 194

Query: 173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSN---- 226
                           +I NG I + ++    L     DGVM+GR A  NP+L       
Sbjct: 195 ----------------VIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQY 238

Query: 227 FDLNYYSNLPQYKIPTRIDIINR 249
                Y   P +    ++D I R
Sbjct: 239 LTTGKYKPPPTFA--EKLDAILR 259

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319

>gnl|CDD|236713 PRK10550, PRK10550, tRNA-dihydrouridine synthase C; Provisional

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 47  PIAFQVGDNEPKKLAKSAK---IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS 103
            +  Q+    P+ LA++A     +  WG D   LNCGCPS  V     GA L+  P L+ 
Sbjct: 64  LVRIQLLGQYPQWLAENAARAVELGSWGVD---LNCGCPSKTVNGSGGGATLLKDPELIY 120

Query: 104 DCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR 154
              KAMR++V   + +TVK R+G D   S +   +    V  AG    +VH R
Sbjct: 121 QGAKAMREAVPAHLPVTVKVRLGWD---SGERKFEIADAVQQAGATELVVHGR 170

Length = 312

>gnl|CDD|182440 PRK10415, PRK10415, tRNA-dihydrouridine synthase B; Provisional

 Score = 56.1 bits (135), Expect = 5e-09
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 49  AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKA 108
             Q+  ++PK++A +A+I  + G   I++N GCP+ +V     G+ L+  P LV   +  
Sbjct: 68  TVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTE 127

Query: 109 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA---GCRTFIVHARN-AFLKKLNPK 164
           + ++V++ +T+K R G    +     R+ V     A   G +   +H R  A L      
Sbjct: 128 VVNAVDVPVTLKIRTGWAPEH-----RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEA- 181

Query: 165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI--DGVMLGREAYKNPF 222
                   +Y+ +  +K+    + +I NG I    +    L+Y   D +M+GR A   P+
Sbjct: 182 --------EYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPW 232

Query: 223 L 223
           +
Sbjct: 233 I 233

Length = 321

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	311
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	100.0
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	100.0
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	100.0
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	100.0
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	100.0
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	100.0
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	100.0
KOG2335|consensus	358		100.0
KOG2333|consensus	614		100.0
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	100.0
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	100.0
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	100.0
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	100.0
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	100.0
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	100.0
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	100.0
KOG2334|consensus	477		99.98
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	99.97
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	99.97
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	99.96
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	99.96
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	99.95
PRK13523	337	NADPH dehydrogenase NamA; Provisional	99.95
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	99.95
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	99.94
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	99.94
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	99.94
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	99.93
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	99.93
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	99.93
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	99.93
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	99.93
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	99.93
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	99.92
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	99.92
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	99.91
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	99.91
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	99.89
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	99.89
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.88
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	99.87
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	99.86
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	99.85
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	99.85
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.84
PRK10605	362	N-ethylmaleimide reductase; Provisional	99.84
PLN02826	409	dihydroorotate dehydrogenase	99.83
PLN02411	391	12-oxophytodienoate reductase	99.82
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.75
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	99.75
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	99.66
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.64
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.62
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	99.61
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.59
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.58
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.57
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.56
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	99.56
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.55
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.54
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.53
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.52
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.51
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.46
KOG1436|consensus	398		99.4
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.34
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	99.33
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	99.29
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	99.29
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	99.25
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	99.22
KOG1799|consensus	471		99.2
KOG0134|consensus	400		99.2
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	99.19
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.16
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.16
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	99.14
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.12
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.11
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.11
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	99.1
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	99.09
cd03319	316	L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase cat	99.06
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	99.06
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	99.05
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.02
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.02
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	99.01
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.01
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.01
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.99
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	98.91
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.88
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.87
PLN02535	364	glycolate oxidase	98.86
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.86
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	98.84
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	98.82
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	98.81
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	98.81
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	98.75
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	98.74
PLN02979	366	glycolate oxidase	98.74
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	98.74
KOG1606|consensus	296		98.73
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.71
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.69
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	98.69
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.68
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	98.66
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	98.65
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	98.65
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	98.65
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	98.64
PLN02617	538	imidazole glycerol phosphate synthase hisHF	98.64
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	98.63
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.61
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.6
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.6
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	98.58
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	98.58
PRK00208	250	thiG thiazole synthase; Reviewed	98.58
cd03315	265	MLE_like Muconate lactonizing enzyme (MLE) like su	98.57
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	98.56
cd03316	357	MR_like Mandelate racemase (MR)-like subfamily of	98.53
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	98.53
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.53
PRK07695	201	transcriptional regulator TenI; Provisional	98.53
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.51
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	98.51
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.47
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	98.47
PLN02591	250	tryptophan synthase	98.46
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.44
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.44
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	98.43
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	98.41
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.39
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.37
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	98.37
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	98.37
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	98.37
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.37
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	98.35
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	98.34
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	98.34
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	98.32
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.32
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	98.32
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	98.32
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	98.31
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.31
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	98.26
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.22
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.21
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	98.2
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	98.19
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	98.18
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.18
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.17
PLN02334	229	ribulose-phosphate 3-epimerase	98.15
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	98.14
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	98.13
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	98.13
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.13
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	98.12
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	98.12
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	98.1
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	98.07
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.04
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	98.04
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	98.03
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	98.03
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	98.03
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	98.03
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.01
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.99
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.98
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.97
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	97.92
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.89
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	97.89
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	97.88
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	97.88
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.86
KOG0538|consensus	363		97.85
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	97.84
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.84
PRK04302	223	triosephosphate isomerase; Provisional	97.83
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	97.82
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	97.8
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	97.8
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	97.79
PRK08227	264	autoinducer 2 aldolase; Validated	97.79
KOG2334|consensus	477		97.77
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	97.77
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	97.77
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	97.74
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	97.74
PRK08005	210	epimerase; Validated	97.73
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	97.72
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.72
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	97.7
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.69
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	97.69
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	97.68
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	97.68
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	97.67
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	97.66
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	97.65
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	97.63
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	97.63
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	97.61
PRK06806	281	fructose-bisphosphate aldolase; Provisional	97.6
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	97.59
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	97.57
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	97.57
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	97.52
cd03329	368	MR_like_4 Mandelate racemase (MR)-like subfamily o	97.47
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.46
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	97.43
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	97.39
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.38
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	97.38
cd03321	355	mandelate_racemase Mandelate racemase (MR) catalyz	97.35
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.35
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.33
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	97.28
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	97.28
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	97.23
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	97.23
PRK06801	286	hypothetical protein; Provisional	97.16
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	97.16
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	97.15
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	97.14
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	97.12
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	97.12
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.11
cd03325	352	D-galactonate_dehydratase D-galactonate dehydratas	97.09
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	97.09
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	97.09
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.07
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	97.06
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	97.06
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	97.06
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	97.05
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	97.04
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.02
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	97.01
PLN02460	338	indole-3-glycerol-phosphate synthase	96.98
COG4948	372	L-alanine-DL-glutamate epimerase and related enzym	96.98
cd03324	415	rTSbeta_L-fuconate_dehydratase Human rTS beta is e	96.95
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	96.92
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.89
PRK14017	382	galactonate dehydratase; Provisional	96.89
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.87
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	96.86
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	96.85
PRK06852	304	aldolase; Validated	96.81
PRK08185	283	hypothetical protein; Provisional	96.81
cd03328	352	MR_like_3 Mandelate racemase (MR)-like subfamily o	96.8
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.77
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	96.75
PLN02424	332	ketopantoate hydroxymethyltransferase	96.73
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	96.71
cd03322	361	rpsA The starvation sensing protein RpsA from E.co	96.71
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	96.69
cd03326	385	MR_like_1 Mandelate racemase (MR)-like subfamily o	96.68
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	96.64
TIGR02534	368	mucon_cyclo muconate and chloromuconate cycloisome	96.61
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	96.58
PRK07315	293	fructose-bisphosphate aldolase; Provisional	96.57
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	96.55
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	96.53
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	96.5
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	96.48
cd03327	341	MR_like_2 Mandelate racemase (MR)-like subfamily o	96.47
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	96.46
TIGR01928	324	menC_lowGC/arch o-succinylbenzoic acid (OSB) synth	96.45
cd03318	365	MLE Muconate Lactonizing Enzyme (MLE), an homoocta	96.43
cd03317	354	NAAAR N-acylamino acid racemase (NAAAR), an octame	96.42
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	96.41
cd03320	263	OSBS o-Succinylbenzoate synthase (OSBS) catalyzes	96.39
PRK07709	285	fructose-bisphosphate aldolase; Provisional	96.39
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	96.37
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	96.37
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	96.32
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.31
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.28
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	96.28
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	96.25
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.24
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.23
cd03323	395	D-glucarate_dehydratase D-Glucarate dehydratase (G	96.22
PRK15072	404	bifunctional D-altronate/D-mannonate dehydratase;	96.22
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	96.21
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.2
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	96.19
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.18
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.17
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	96.14
TIGR01927	307	menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthe	96.14
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	96.14
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	96.11
PLN02334	229	ribulose-phosphate 3-epimerase	96.11
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	96.09
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	96.07
KOG4175|consensus	268		96.04
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	96.04
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	96.01
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	96.01
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	96.0
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	95.99
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	95.99
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	95.98
PRK02714	320	O-succinylbenzoate synthase; Provisional	95.97
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	95.95
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	95.95
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.95
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	95.93
PRK08999	312	hypothetical protein; Provisional	95.92
PRK14057	254	epimerase; Provisional	95.9
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	95.9
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.86
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	95.82
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	95.81
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	95.8
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	95.79
PRK07084	321	fructose-bisphosphate aldolase; Provisional	95.79
PRK03170	292	dihydrodipicolinate synthase; Provisional	95.78
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	95.78
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	95.77
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	95.76
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	95.73
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	95.72
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	95.71
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	95.69
cd00423	258	Pterin_binding Pterin binding enzymes. This family	95.69
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	95.68
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	95.68
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.66
PRK04147	293	N-acetylneuraminate lyase; Provisional	95.63
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	95.63
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	95.6
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	95.6
PRK15452	443	putative protease; Provisional	95.59
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	95.59
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	95.59
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	95.58
COG0413	268	PanB Ketopantoate hydroxymethyltransferase [Coenzy	95.58
PRK14040	593	oxaloacetate decarboxylase; Provisional	95.55
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	95.54
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	95.52
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	95.51
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	95.51
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	95.5
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	95.47
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.46
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	95.43
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	95.43
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	95.41
PRK03170	292	dihydrodipicolinate synthase; Provisional	95.41
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	95.39
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	95.39
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	95.37
PRK05835	307	fructose-bisphosphate aldolase; Provisional	95.36
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.35
PRK15063	428	isocitrate lyase; Provisional	95.31
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	95.31
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	95.31
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	95.3
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	95.25
TIGR03247	441	glucar-dehydr glucarate dehydratase. Glucarate deh	95.19
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	95.17
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	95.16
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	95.15
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	95.14
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	95.11
PRK04147	293	N-acetylneuraminate lyase; Provisional	95.1
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	95.1
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	95.06
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	95.01
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	95.0
TIGR00284	499	dihydropteroate synthase-related protein. This pro	94.93
PLN02424	332	ketopantoate hydroxymethyltransferase	94.9
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	94.88
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.88
KOG0623|consensus	541		94.85
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.79
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	94.75
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	94.74
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	94.72
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	94.71
PRK15129	321	L-Ala-D/L-Glu epimerase; Provisional	94.69
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	94.66
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	94.62
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	94.58
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	94.57
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.56
PRK11613	282	folP dihydropteroate synthase; Provisional	94.51
PLN02979	366	glycolate oxidase	94.46
PRK02901	327	O-succinylbenzoate synthase; Provisional	94.45
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	94.42
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	94.36
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	94.34
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.34
PRK05105	322	O-succinylbenzoate synthase; Provisional	94.3
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	94.29
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	94.25
COG1411	229	Uncharacterized protein related to proFAR isomeras	94.25
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	94.24
PLN02535	364	glycolate oxidase	94.23
cd00953	279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	94.23
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	94.22
PRK06256	336	biotin synthase; Validated	94.19
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	94.16
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	94.12
PRK02227	238	hypothetical protein; Provisional	94.07
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	94.03
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	94.01
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	93.99
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	93.95
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	93.93
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	93.9
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	93.88
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	93.86
PRK13523	337	NADPH dehydrogenase NamA; Provisional	93.85
KOG2550|consensus	503		93.78
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	93.78
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	93.77
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	93.67
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	93.65
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	93.63
PRK11572	248	copper homeostasis protein CutC; Provisional	93.62
PRK14057	254	epimerase; Provisional	93.61
PRK04452	319	acetyl-CoA decarbonylase/synthase complex subunit	93.6
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	93.6
cd00740	252	MeTr MeTr subgroup of pterin binding enzymes. This	93.55
PRK09282	592	pyruvate carboxylase subunit B; Validated	93.52
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.49
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	93.47
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	93.47
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	93.46
PRK01060	281	endonuclease IV; Provisional	93.36
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	93.36
KOG2550|consensus	503		93.26
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	93.24
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	93.2
TIGR01502	408	B_methylAsp_ase methylaspartate ammonia-lyase. Thi	93.2
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	93.19
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	93.19
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	93.18
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	93.16
PRK14041	467	oxaloacetate decarboxylase; Provisional	93.11
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	93.09
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	93.08
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	93.0
KOG4201|consensus	289		92.99
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	92.95
KOG3111|consensus	224		92.93
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	92.93
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	92.85
PRK12330	499	oxaloacetate decarboxylase; Provisional	92.75
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	92.73
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	92.54
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	92.52
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	92.5
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	92.48
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	92.48
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	92.46
PLN02363	256	phosphoribosylanthranilate isomerase	92.35
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	92.25
COG0826	347	Collagenase and related proteases [Posttranslation	92.25
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	92.15
COG4981	717	Enoyl reductase domain of yeast-type FAS1 [Lipid m	92.07
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	92.07
PLN02417	280	dihydrodipicolinate synthase	92.04
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	92.01
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	92.0
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	91.84
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	91.82
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	91.8
TIGR03586	327	PseI pseudaminic acid synthase.	91.75
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	91.74
PLN02417	280	dihydrodipicolinate synthase	91.71
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	91.62
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	91.61
KOG0538|consensus	363		91.44
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	91.43
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	91.4
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	91.37
PRK08444	353	hypothetical protein; Provisional	91.32
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	91.3
TIGR02127	261	pyrF_sub2 orotidine 5'-phosphate decarboxylase, su	91.15
PRK14042	596	pyruvate carboxylase subunit B; Provisional	91.12
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	91.12
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	90.99
PRK13753	279	dihydropteroate synthase; Provisional	90.96
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	90.95

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=100.00  E-value=1e-74  Score=539.79  Aligned_cols=305  Identities=50%  Similarity=0.874  Sum_probs=282.8

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC   79 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~   79 (311)
                      +|+||+|||.+||+||+.+++||||+++++++ ++..+++.+++.+.|+++||+|+||+.|++||++++++|||+|||||
T Consensus         9 ~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~   88 (318)
T TIGR00742         9 LDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKKDILKFSPEESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNV   88 (318)
T ss_pred             CCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHHHHcccCCCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence            58999999999999996589999999999998 65557888899999999999999999999999999999999999999


Q ss_pred             CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386          80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK  159 (311)
Q Consensus        80 gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~  159 (311)
                      |||+++++++++|++||++|+++.+|++++++++++|||||+|+||++.++++.+.++++.++++|+++|+|||||++.+
T Consensus        89 GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~q  168 (318)
T TIGR00742        89 GCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLS  168 (318)
T ss_pred             CCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhc
Confidence            99999999999999999999999999999999999999999999998876666788999999999999999999998789


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhhccCCCCCC
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK  239 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~  239 (311)
                      ||+|+.+++.++++|+.|+++++.++++|||+||||+|++|+.+++..|||||||||++.|||+|.++.+.+.++.  .+
T Consensus       169 g~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgVMigRgal~nP~if~~~~~~l~~~~--~~  246 (318)
T TIGR00742       169 GLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGVMVGREAYENPYLLANVDREIFNET--DE  246 (318)
T ss_pred             CCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEEEECHHHHhCCHHHHHHHHHhcCCC--CC
Confidence            9999988889999999999999988689999999999999999999889999999999999999999998877542  25


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386         240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN  309 (311)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~  309 (311)
                      ++++.++++.+++|++++.+++  ..+..+|||+.||++|+|++++||+++++..+...+..++|+++++
T Consensus       247 ~~~~~e~~~~~~~~~~~~~~~~--~~~~~~rk~~~~y~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  314 (318)
T TIGR00742       247 ILTRKEIVEQMLPYIEEYLSQG--LSLNHITRHLLGLFQGKPGAKQWRRYLSENAPKAGAGIEVLETALE  314 (318)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcc--chHHHHHHHHHHHHccCCCHHHHHHHHHhcccCCCCcHHHHHHHHH
Confidence            6889999999999999877653  5789999999999999999999999999999887788999998875

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=100.00  E-value=2.3e-70  Score=514.99  Aligned_cols=305  Identities=52%  Similarity=0.918  Sum_probs=282.5

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC   79 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~   79 (311)
                      .|+||+|||.+|+++|+++++||||+++++++ +++.+++.+++.++|+++||+|+||+.|++||++++++|||+|||||
T Consensus        19 ~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~~~~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN~   98 (333)
T PRK11815         19 MDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGDRERLLAFDPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNV   98 (333)
T ss_pred             CCCcCHHHHHHHHHhCCCCEEEECCEEeccccccCHHHHhccCCCCCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEcC
Confidence            58999999999999996689999999999999 55667888899999999999999999999999999999999999999


Q ss_pred             CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386          80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK  159 (311)
Q Consensus        80 gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~  159 (311)
                      |||+++++++++|++|++||+++.+|++++++++++||+||+|+|+++.++.+++.++++.++++|+++|+||+|+.+.+
T Consensus        99 gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~  178 (333)
T PRK11815         99 GCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLK  178 (333)
T ss_pred             CCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhc
Confidence            99999999999999999999999999999999999999999999998866556788999999999999999999998889


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhhccCCCCCC
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK  239 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~  239 (311)
                      |++|+.+++.++++|++++++++.++++|||+||||.|++|+.++++.|||||||||++.|||+|+++.+.+++...  +
T Consensus       179 g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~--~  256 (333)
T PRK11815        179 GLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQHVDGVMIGRAAYHNPYLLAEVDRELFGEPA--P  256 (333)
T ss_pred             CCCccccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhcCCEEEEcHHHHhCCHHHHHHHHHhcCCCC--C
Confidence            99998889999999999999999866899999999999999999998899999999999999999999887775432  4


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386         240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN  309 (311)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~  309 (311)
                      ++++.+++..+++|++.+.++|  ..+..+|||+.||++|+||+++||+.+++..++....+++|++.+.
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  324 (333)
T PRK11815        257 PLSRSEVLEAMLPYIERHLAQG--GRLNHITRHMLGLFQGLPGARAWRRYLSENAHKPGAGIEVLEEALA  324 (333)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHHHHcCCCCHHHHHHHHHhhcccCCCCHHHHHHHHH
Confidence            5789999999999999988866  3689999999999999999999999999999987777799988764

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-70  Score=510.61  Aligned_cols=293  Identities=31%  Similarity=0.506  Sum_probs=262.2

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCc--hhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK--KHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~--~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      +|+||.|||++|+++|+.+++|||||++++++ ++.  ...+...+.+.|+++||+|++|+.+++||+++++.|+|+|||
T Consensus        19 ~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~Idl   98 (323)
T COG0042          19 AGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELLAEAAKIAEELGADIIDL   98 (323)
T ss_pred             CCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHHHHHHHHHHhcCCCEEee
Confidence            58999999999999994489999999999999 543  334444566999999999999999999999999999999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                      |||||+++++++|+||+||++|+++.+||++++++++ +|||||+|+||++.+.  ...++++.++++|+++|||||||+
T Consensus        99 N~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~--~~~~ia~~~~~~g~~~ltVHgRtr  176 (323)
T COG0042          99 NCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDI--LALEIARILEDAGADALTVHGRTR  176 (323)
T ss_pred             eCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccc--cHHHHHHHHHhcCCCEEEEecccH
Confidence            9999999999999999999999999999999999995 9999999999998763  257899999999999999999998


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                       .++|+       +++||++|+++++.++++|||+||||.|++|+.++++.  |||||||||+++|||+|+++ +.+.++
T Consensus       177 -~~~y~-------~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i-~~~~~g  247 (323)
T COG0042         177 -AQGYL-------GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI-DYLETG  247 (323)
T ss_pred             -HhcCC-------CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH-HHhhcC
Confidence             34443       45899999999999955999999999999999999987  99999999999999999999 555554


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386         235 LPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL  308 (311)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~  308 (311)
                      ..  .++++.++++.+.+|++.+.+ +| ...+..+|||+.||++|+|++++||+.+++..+.. ++.+.|++++
T Consensus       248 ~~--~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~~r~h~~~~~~~~~~a~~~r~~~~~~~~~~-~~~~~l~~~~  318 (323)
T COG0042         248 EL--LPPTLAEVLDILREHLELLLEYYG-KKGLRRLRKHLGYYLKGLPGARELRRALNKAEDGA-EVRRALEAVF  318 (323)
T ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHhhcCccHHHHHHHHhccCcHH-HHHHHHHHHH
Confidence            43  348899999999999999998 65 35789999999999999999999999999999998 7777777654

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=100.00  E-value=8.5e-68  Score=492.47  Aligned_cols=287  Identities=22%  Similarity=0.287  Sum_probs=253.1

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC-ch----hccc---cCCCCCCeEEEecCCCHHHHHHHHHHHHHcC
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN-KK----HCLD---FNAEEHPIAFQVGDNEPKKLAKSAKIIQKWG   71 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~-~~----~~l~---~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g   71 (311)
                      .|+||+|||++|+++|+++++||||||++++. ++ ..    ..+.   +++.++|+++||+|++|+.|++||+++++.|
T Consensus         9 ag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~g   88 (312)
T PRK10550          9 EGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKVFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENAARAVELG   88 (312)
T ss_pred             CCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchhHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHHHHHHHcC
Confidence            38999999999999995599999999999887 42 22    2233   5778999999999999999999999999999


Q ss_pred             CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386          72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF  149 (311)
Q Consensus        72 ~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i  149 (311)
                      ||+||||||||++++.+.|+|++|+++|+++.+|++++++++  ++|||||+|+||++.+   +..++++.++++|+++|
T Consensus        89 ~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~---~~~~~a~~l~~~Gvd~i  165 (312)
T PRK10550         89 SWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGE---RKFEIADAVQQAGATEL  165 (312)
T ss_pred             CCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCch---HHHHHHHHHHhcCCCEE
Confidence            999999999999999999999999999999999999999988  4999999999997644   35799999999999999


Q ss_pred             EEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386         150 IVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       150 tvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      +||+||. .++|+|+      ++||+.++++++.+ ++|||+||||.|++|+.++++.  ||+||||||+++|||+|+++
T Consensus       166 ~Vh~Rt~-~~~y~g~------~~~~~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~  237 (312)
T PRK10550        166 VVHGRTK-EDGYRAE------HINWQAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVV  237 (312)
T ss_pred             EECCCCC-ccCCCCC------cccHHHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHh
Confidence            9999997 4566543      35999999999998 8999999999999999999965  99999999999999999998


Q ss_pred             HhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHH
Q psy2386         228 DLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLN  306 (311)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~  306 (311)
                      +.   +.    +++++.|+++.+.+|++...+ +++...+..||||+.||++|+|++++||++++++++.. +..++|++
T Consensus       238 ~~---g~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~i~~~~~~~-e~~~~~~~  309 (312)
T PRK10550        238 KY---NE----PRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQWLGYLRKEYDEATELFQEIRALNNSP-DIARAIQA  309 (312)
T ss_pred             hc---CC----CCCCHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHH-HHHHHHHh
Confidence            64   22    357899999999999876555 44323578899999999999999999999999999999 88888875

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=100.00  E-value=2.4e-67  Score=492.24  Aligned_cols=294  Identities=18%  Similarity=0.308  Sum_probs=263.6

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      .|+||+|||++|+++|+ +++||||++++++. . + +...+...+.+.|+++||+|++|+.|++||+++++.|+|+|||
T Consensus        18 ~g~td~~fR~l~~~~g~-~~~~temvs~~~~~~~~~~~~~~~~~~~~~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~Idl   96 (321)
T PRK10415         18 AGITDRPFRTLCYEMGA-GLTVSEMMSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDI   96 (321)
T ss_pred             CCCCcHHHHHHHHHHCC-CEEEEccEEcchhhhcCHhHHHHhccCccCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEE
Confidence            48999999999999995 89999999999876 3 2 3334445667789999999999999999999999899999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |||||++++.+.|+|++|++||+++.+|++++++++++||+||+|.||++...  +..++++.++++|+++|+||+||. 
T Consensus        97 N~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~--~~~~~a~~le~~G~d~i~vh~rt~-  173 (321)
T PRK10415         97 NMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHR--NCVEIAQLAEDCGIQALTIHGRTR-  173 (321)
T ss_pred             eCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcc--hHHHHHHHHHHhCCCEEEEecCcc-
Confidence            99999999999999999999999999999999999999999999999987542  468999999999999999999985 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      .+.++       ++++|+.++++++.+ ++|||+||||.|++|+.++++.  ||+||+|||+++|||+|+++.+++..+.
T Consensus       174 ~~~~~-------G~a~~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~  245 (321)
T PRK10415        174 ACLFN-------GEAEYDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGE  245 (321)
T ss_pred             ccccC-------CCcChHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCC
Confidence            33443       447999999999998 8999999999999999999974  9999999999999999999988765433


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386         236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL  308 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~  308 (311)
                      . .+++++.++++.+++|++.+.+ +|+...+..+|||+.||++|+|++++||+.++++++.. ++.++|++++
T Consensus       246 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~  317 (321)
T PRK10415        246 L-LPPLPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDAS-EQLEALEAYF  317 (321)
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcCCchHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence            3 3568899999999999999888 77655789999999999999999999999999999999 9999999876

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=100.00  E-value=1.1e-68  Score=498.99  Aligned_cols=293  Identities=28%  Similarity=0.470  Sum_probs=231.7

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      .|+||+|||.+|+++|+.+++|||||++++++ ++  ..+++.+.+.++|+++||+|+||+.+++||+++.+.|+|+|||
T Consensus         6 ~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDl   85 (309)
T PF01207_consen    6 AGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDL   85 (309)
T ss_dssp             TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEE
T ss_pred             CCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEec
Confidence            58999999999999997569999999999998 43  4568888898999999999999999999999999999999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |||||+++++++|+|++||++|+++.+|++++++++++|||||+|+||++..  +++.++++.++++|+++||||+||. 
T Consensus        86 N~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~--~~~~~~~~~l~~~G~~~i~vH~Rt~-  162 (309)
T PF01207_consen   86 NMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP--EETIEFARILEDAGVSAITVHGRTR-  162 (309)
T ss_dssp             EE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C--HHHHHHHHHHHHTT--EEEEECS-T-
T ss_pred             cCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccch--hHHHHHHHHhhhcccceEEEecCch-
Confidence            9999999999999999999999999999999999999999999999999543  3689999999999999999999996 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                             .+++.+++||+.|+++++.+ ++|||+||||+|++|+.++++.  |||||||||++.|||+|++......+..
T Consensus       163 -------~q~~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~  234 (309)
T PF01207_consen  163 -------KQRYKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEP  234 (309)
T ss_dssp             -------TCCCTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT
T ss_pred             -------hhcCCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCC
Confidence                   44556679999999999999 6999999999999999999986  9999999999999999996322222322


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHh
Q psy2386         236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      .  +.++..+.+..+.+|++...+ +|+...+..++||+.||++++++++.||+.++++++.. +..++|++.
T Consensus       235 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~-e~~~~l~~~  304 (309)
T PF01207_consen  235 E--PFPPIAERLDIILRHYDYMEEFYGEEKALRQMRKHLKWYFKGFPGARKFRRELNKCKTLE-EFLELLEEA  304 (309)
T ss_dssp             ----S--HHHHHHHHHHHHHHHHHHHHCCHHHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHH-HHHHHH---
T ss_pred             C--CCCchhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHH-HHhhhhccc
Confidence            2  234467888888888887777 55436789999999999999999999999999999999 889999843

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=100.00  E-value=1.8e-61  Score=453.26  Aligned_cols=295  Identities=24%  Similarity=0.391  Sum_probs=264.6

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      +|+||++||.+|+++| ++++||||++++++. ..  ..+++.+++.+.|+++||+|++|++|++||++++++|||+|||
T Consensus        16 ~~~t~~~fR~l~~~~g-~~~~~temi~~~~l~~~~~~~~~~~~~~~~~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~Iel   94 (319)
T TIGR00737        16 AGVTDSPFRRLVAEYG-AGLTVCEMVSSEAIVYDSQRTMRLLDIAEDETPISVQLFGSDPDTMAEAAKINEELGADIIDI   94 (319)
T ss_pred             CCCCcHHHHHHHHHHC-CCEEEECCEEEhhhhcCCHHHHHHhhcCCccceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEE
Confidence            5899999999999999 599999999999998 42  3457778889999999999999999999999999999999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |+|||++++++.++|++|+++|+++.+|++++++++++||+||+|.||++...  ++.++++.++++|+++|+||+|+. 
T Consensus        95 N~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~--~~~~~a~~l~~~G~d~i~vh~r~~-  171 (319)
T TIGR00737        95 NMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHI--NAVEAARIAEDAGAQAVTLHGRTR-  171 (319)
T ss_pred             ECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcc--hHHHHHHHHHHhCCCEEEEEcccc-
Confidence            99999998888889999999999999999999999999999999999976542  467999999999999999999986 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      .++++       ++++|++++++++.+ ++||++||||.|++|+.++++.  ||+||+|||++.|||+|+++.+.+..+.
T Consensus       172 ~~~~~-------~~~~~~~i~~i~~~~-~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~  243 (319)
T TIGR00737       172 AQGYS-------GEANWDIIARVKQAV-RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGK  243 (319)
T ss_pred             cccCC-------CchhHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCC
Confidence            44544       347999999999998 7999999999999999999954  9999999999999999999988765433


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhhC
Q psy2386         236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTLN  309 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~~  309 (311)
                      . .+++++.|.+..+.+|++...+ +|+...+..+|||+.+|++++|++++||+.|+++++.. +..++|++++.
T Consensus       244 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~  316 (319)
T TIGR00737       244 Y-KPPPTFAEKLDAILRHLQLLADYYGESKGLRIARKHIAWYLKGFPGNAALRQTLNHASSFQ-EVKQLLDDFFE  316 (319)
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHH-HHHHHHHHHHh
Confidence            2 2467889999999999998877 77545689999999999999999999999999999999 89999998764

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG2335|consensus

Probab=100.00  E-value=6.7e-60  Score=432.89  Aligned_cols=283  Identities=26%  Similarity=0.450  Sum_probs=243.3

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      ||+|++|||+|||+|| ++++||||+.|+.++ +.  ....+.++++|+|+|||++|+||+.|.+||+++++++ |+|||
T Consensus        27 vd~S~l~fR~L~R~y~-~~l~yTpMi~a~~fv~~ek~r~~~~st~~~D~PLIvQf~~ndp~~ll~Aa~lv~~y~-D~idl  104 (358)
T KOG2335|consen   27 VDYSELAFRRLVRLYG-ADLLYTPMIHAKTFVHSEKYRDSELSTSPEDRPLIVQFGGNDPENLLKAARLVQPYC-DGIDL  104 (358)
T ss_pred             ccccHHHHHHHHHHhC-CceEechHHHHHHHhcCccchhhhcccCCCCCceEEEEcCCCHHHHHHHHHHhhhhc-Ccccc
Confidence            7999999999999999 599999999999998 42  3457788999999999999999999999999999995 99999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |||||+..+.++|||++||.+|+++.+||+++++.++.|||+|||++.|..    .++++++.++++|++.+||||||++
T Consensus       105 NcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~----kTvd~ak~~e~aG~~~ltVHGRtr~  180 (358)
T KOG2335|consen  105 NCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE----KTVDYAKMLEDAGVSLLTVHGRTRE  180 (358)
T ss_pred             cCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH----HHHHHHHHHHhCCCcEEEEecccHH
Confidence            999999999999999999999999999999999999999999999986654    4689999999999999999999997


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      +.|.      ..+|+||+.|+.+++.+|+|||++||||.|++|+.++++.  |||||+|||+|.|||+|...     +  
T Consensus       181 ~kg~------~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~-----~--  247 (358)
T KOG2335|consen  181 QKGL------KTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFLTA-----G--  247 (358)
T ss_pred             hcCC------CCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhccC-----C--
Confidence            6663      3567999999999999977999999999999999999985  99999999999999999551     1  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcH-HHHHHHhCCCCCCCChHHHHH-HhhC
Q psy2386         236 PQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSN-KFKQILSKPNLLTIDNFQFFL-NTLN  309 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~-~~r~~l~~~~~~~~~~~~~l~-~~~~  309 (311)
                         ..++..++...++++..++  .|. .....++.|+...++.+-.-. .+|+.++...+.. .+.++++ ..+.
T Consensus       248 ---~~~~~~~~~~~~l~~~~e~--~g~-~~~~~~~~Hl~~m~~~~~~~~~~~r~~~~~~~~~~-~~~~~l~~~~~~  316 (358)
T KOG2335|consen  248 ---YGPTPWGCVEEYLDIAREF--GGL-SSFSLIRHHLFKMLRPLLSIHQDLRRDLAALNSCE-SVIDFLEELVLM  316 (358)
T ss_pred             ---CCCCHHHHHHHHHHHHHHc--CCC-chhhHHHHHHHHHHHHHHhhhHHHHHHHhhccchh-hHHHHHHHHHHH
Confidence               2355667787766665543  332 135677888888776544444 4789999998888 8999998 4433

>KOG2333|consensus

Probab=100.00  E-value=7.1e-49  Score=367.95  Aligned_cols=260  Identities=22%  Similarity=0.356  Sum_probs=220.7

Q ss_pred             CCCHHHHHHHHHhCCCcEEEecceeccccc-C--CchhccccCCCCCCeEEEecCCCHHHHHHHHHHHH-HcCCCEEEec
Q psy2386           3 LTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ-KWGYDEINLN   78 (311)
Q Consensus         3 ~td~~fR~l~~~~g~~~l~~temv~a~~l~-~--~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~-~~g~d~IdiN   78 (311)
                      +.++|||+||+.||+ +++|.||--+-.|+ |  ..+.+++.|..|.-++|||.|+.|+.+++||+++. ...+|+||||
T Consensus       275 vGNLPFRRlCk~lGA-DvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN  353 (614)
T KOG2333|consen  275 VGNLPFRRLCKKLGA-DVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLN  353 (614)
T ss_pred             cCCccHHHHHHHhCC-ccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHhhcceeeeecc
Confidence            679999999999995 99999999999999 6  35678999999999999999999999999999775 5678999999


Q ss_pred             cCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHH-HcCCCEEEEecCcc
Q psy2386          79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVS-SAGCRTFIVHARNA  156 (311)
Q Consensus        79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~-~~G~~~itvh~Rt~  156 (311)
                      ||||..-+.+.|.|++||++|..+.++++++...++ +|+|||||.|..++...  ..+++..+. +.|+++||+|||.+
T Consensus       354 ~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~--a~~Li~~i~newg~savTlHGRSR  431 (614)
T KOG2333|consen  354 MGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPV--AHELIPRIVNEWGASAVTLHGRSR  431 (614)
T ss_pred             CCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchh--HHHHHHHHhhccCcceEEecCchh
Confidence            999999999999999999999999999999998885 59999999998887653  567788888 99999999999986


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh---cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY---IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~---adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                              ++||++.+||++|.++++.+.. +|+|+||||.|++|..+.+..   +|+||||||++-.||||.+|++..+
T Consensus       432 --------qQRYTK~AnWdYi~e~a~~ak~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~  503 (614)
T KOG2333|consen  432 --------QQRYTKSANWDYIEECADKAKSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQH  503 (614)
T ss_pred             --------hhhhhcccChHHHHHHHHhcccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhc
Confidence                    7888999999999999988744 999999999999998888764   9999999999999999999998755


Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHh
Q psy2386         233 SNLPQYKIPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLM  277 (311)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~  277 (311)
                      ..-   ++-.+.++++.|.+|-.+++..++ ..+...|+|++-|+
T Consensus       504 wD~---sSteRldiL~df~nyGLeHWGSDt-~GVetTRRFlLE~l  544 (614)
T KOG2333|consen  504 WDI---SSTERLDILKDFCNYGLEHWGSDT-KGVETTRRFLLEFL  544 (614)
T ss_pred             CCc---cchHHHHHHHHHHhhhhhhcCCcc-ccHHHHHHHHHHHH
Confidence            421   233344444454555545544322 46888888877664

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=100.00  E-value=3.4e-48  Score=347.06  Aligned_cols=216  Identities=34%  Similarity=0.595  Sum_probs=196.5

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCc--hhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK--KHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~--~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      +|+||++||++|++|| ++++||||++++.++ .++  ..++..++.+.|+++||+|++|++|+++|++++++|||+|||
T Consensus         8 ~~~~~~~fR~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~iel   86 (231)
T cd02801           8 VGVTDLPFRLLCRRYG-ADLVYTEMISAKALLRGNRKRLRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDL   86 (231)
T ss_pred             CCCcCHHHHHHHHHHC-CCEEEecCEEEhhhhhcCHHHHHhhccCccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999 699999999999998 433  356667888999999999999999999999999999999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |+|||++++++++||+.++++++++.++++++++.+++||+||+|.+|+..   +++.++++.+++.|+++|++|+|+..
T Consensus        87 n~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~---~~~~~~~~~l~~~Gvd~i~v~~~~~~  163 (231)
T cd02801          87 NMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE---EETLELAKALEDAGASALTVHGRTRE  163 (231)
T ss_pred             eCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc---hHHHHHHHHHHHhCCCEEEECCCCHH
Confidence            999999999999999999999999999999999999999999999999764   24689999999999999999999852


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                       ++       +.++.+|+.++++++.+ ++||++||||.|++|+.++++.  ||+||+||+++.|||+++++.+
T Consensus       164 -~~-------~~~~~~~~~~~~i~~~~-~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~~~  228 (231)
T cd02801         164 -QR-------YSGPADWDYIAEIKEAV-SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE  228 (231)
T ss_pred             -Hc-------CCCCCCHHHHHHHHhCC-CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhhhh
Confidence             22       23457999999999987 8999999999999999999975  9999999999999999999865

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=100.00  E-value=7.1e-42  Score=306.53  Aligned_cols=202  Identities=18%  Similarity=0.234  Sum_probs=166.4

Q ss_pred             CCCCHHHHH-HHHHhCCCcEE------Eecceeccccc-C-Cc------------hhccccCCCCCCeEEEecCCCHHHH
Q psy2386           2 NLTDRHCRM-FHRQITRYSWL------YTEMFTTQAIL-G-NK------------KHCLDFNAEEHPIAFQVGDNEPKKL   60 (311)
Q Consensus         2 ~~td~~fR~-l~~~~g~~~l~------~temv~a~~l~-~-~~------------~~~l~~~~~~~p~~~Ql~g~~~~~~   60 (311)
                      |+||.+||. +|..+|. ++.      +|+|..++.+. . .+            ..+-.....+.|+++||+|++|+.+
T Consensus         9 g~td~~f~~~~~~~~g~-~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~   87 (233)
T cd02911           9 GITDGDFCRKRADHAGL-VFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKALKDSNVLVGVNVRSSSLEPL   87 (233)
T ss_pred             CCcCHHHHHhhCccCCE-EEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHhhccCCeEEEEecCCCHHHH
Confidence            899999999 7777773 444      44444444443 1 11            0011113345799999999999999


Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .++|+.+++. +|+||||||||++++++.|+|++|++||+++.+|++++++ .++||+||+|+||+ .    +..++++.
T Consensus        88 ~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~-~----~~~~la~~  160 (233)
T cd02911          88 LNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD-V----DDEELARL  160 (233)
T ss_pred             HHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC-c----CHHHHHHH
Confidence            9999999885 5999999999999999999999999999999999999998 59999999999997 3    25789999


Q ss_pred             HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ++++|+|.|+++.+.   .|         ..+||+.|++++  . ++|||+||||.|++|+.++++. ||+||+||+  .
T Consensus       161 l~~aG~d~ihv~~~~---~g---------~~ad~~~I~~i~--~-~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~--~  223 (233)
T cd02911         161 IEKAGADIIHVDAMD---PG---------NHADLKKIRDIS--T-ELFIIGNNSVTTIESAKEMFSYGADMVSVARA--S  223 (233)
T ss_pred             HHHhCCCEEEECcCC---CC---------CCCcHHHHHHhc--C-CCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC--C
Confidence            999999987665442   22         247999999997  5 7999999999999999999987 999999999  9


Q ss_pred             CCcchHHhH
Q psy2386         220 NPFLMSNFD  228 (311)
Q Consensus       220 ~P~i~~~~~  228 (311)
                      |||+|++++
T Consensus       224 ~p~~~~~~~  232 (233)
T cd02911         224 LPENIEWLV  232 (233)
T ss_pred             CchHHHHhh
Confidence            999999875

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=100.00  E-value=1e-37  Score=277.46  Aligned_cols=161  Identities=19%  Similarity=0.152  Sum_probs=145.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ...|+++|+.+++|+++.++++.+.+ ++|+||||||||++++++.|+|++|++||+++.++++++++ .++||+||+|+
T Consensus        66 ~~~~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR~  143 (231)
T TIGR00736        66 SRALVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIRG  143 (231)
T ss_pred             hcCCEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeCC
Confidence            46799999999999999999999988 69999999999999999999999999999999999999995 58999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      ++++.    +..++++.++++|+++|+||.+..   |   .     +.++|+.|+++++.++++|||+||||+|++|+.+
T Consensus       144 ~~~~~----~~~~~a~~l~~aGad~i~Vd~~~~---g---~-----~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e  208 (231)
T TIGR00736       144 NCIPL----DELIDALNLVDDGFDGIHVDAMYP---G---K-----PYADMDLLKILSEEFNDKIIIGNNSIDDIESAKE  208 (231)
T ss_pred             CCCcc----hHHHHHHHHHHcCCCEEEEeeCCC---C---C-----chhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHH
Confidence            98653    357999999999999999997642   2   1     2379999999999983499999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCC
Q psy2386         204 HLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P  221 (311)
                      +++. ||+||+|||++.+-
T Consensus       209 ~l~~GAd~VmvgR~~l~~~  227 (231)
T TIGR00736       209 MLKAGADFVSVARAILKGN  227 (231)
T ss_pred             HHHhCCCeEEEcHhhccCC
Confidence            9987 99999999998763

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=100.00  E-value=3.4e-36  Score=280.02  Aligned_cols=214  Identities=19%  Similarity=0.215  Sum_probs=175.5

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEe---------------------cceecccccC-Cch---hcccc--CCCCCCeEEEecC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYT---------------------EMFTTQAILG-NKK---HCLDF--NAEEHPIAFQVGD   54 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~t---------------------emv~a~~l~~-~~~---~~l~~--~~~~~p~~~Ql~g   54 (311)
                      |+|+.++|.+++. | .++++|                     +|+++.++.+ ...   +.+..  ++.+.|+++||+|
T Consensus        22 ~~~~~~~~~~~~~-G-~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~qi~g   99 (300)
T TIGR01037        22 GSGVESLRRIDRS-G-AGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIASVYG   99 (300)
T ss_pred             CCCHHHHHHHHHc-C-CcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEEeec
Confidence            7899999999987 7 488999                     8888888872 222   22221  3345699999999


Q ss_pred             CCHHHHHHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~  132 (311)
                      ++++++.++|+.+++++  +|+||||+|||+.+    ++|+.++++|+++.+|++++++.+++||+||++.+.+      
T Consensus       100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~----~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~------  169 (300)
T TIGR01037       100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVK----GGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT------  169 (300)
T ss_pred             CCHHHHHHHHHHHHhccCccCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh------
Confidence            99999999999999863  89999999999975    5899999999999999999999999999999996432      


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccc---------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~---------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      +..++++.++++|+|+|++|+++..               .+|++|+.   ..+..++.++++++.+ ++|||+||||.|
T Consensus       170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~---~~~~~l~~v~~i~~~~-~ipvi~~GGI~s  245 (300)
T TIGR01037       170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPA---IKPIALRMVYDVYKMV-DIPIIGVGGITS  245 (300)
T ss_pred             hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchh---hhHHHHHHHHHHHhcC-CCCEEEECCCCC
Confidence            3578999999999999999865320               12444431   1123458899999998 799999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++|+.+++.. ||+||+||+++.+||+|+++.+.+
T Consensus       246 ~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l  280 (300)
T TIGR01037       246 FEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGL  280 (300)
T ss_pred             HHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHH
Confidence            9999999976 999999999999999998887543

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=100.00  E-value=1.5e-35  Score=275.38  Aligned_cols=200  Identities=15%  Similarity=0.194  Sum_probs=168.0

Q ss_pred             cEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc
Q psy2386          19 SWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI   94 (311)
Q Consensus        19 ~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~   94 (311)
                      ++.+|||+++.++. . + ..++.+..+ +.|+++|++|+ ++++|.++|+.+++.|+|+||||+|||+. ..++++|+.
T Consensus        71 g~~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~-~~~~~~G~~  148 (299)
T cd02940          71 GFNNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHG-MPERGMGAA  148 (299)
T ss_pred             cccCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCCchh
Confidence            57788999888875 2 1 222233233 78999999998 99999999999999999999999999998 456678999


Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE---------------------ec
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV---------------------HA  153 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv---------------------h~  153 (311)
                      |+++|+.+.+|++++++.+++||+||+|.+.+      ++.++++.++++|+++|++                     |+
T Consensus       149 l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~------~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~  222 (299)
T cd02940         149 VGQDPELVEEICRWVREAVKIPVIAKLTPNIT------DIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEG  222 (299)
T ss_pred             hccCHHHHHHHHHHHHHhcCCCeEEECCCCch------hHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccC
Confidence            99999999999999999999999999997543      3578999999999999984                     45


Q ss_pred             CccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      |+. .+|+||+.   ..|..|++|+++++.+. ++|||+||||.|.+|+.+++.. ||+||||||++. +|.++.++.+.
T Consensus       223 ~~~-~gg~sG~a---~~p~~l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~~~~~i~~~  298 (299)
T cd02940         223 KTT-YGGYSGPA---VKPIALRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFTIVDDMCTG  298 (299)
T ss_pred             CCC-cCcccCCC---cchHHHHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecccCCcHHHHHhhh
Confidence            554 56777762   23446999999999873 6999999999999999999977 999999999877 99999988753

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=100.00  E-value=1.4e-32  Score=255.14  Aligned_cols=212  Identities=17%  Similarity=0.216  Sum_probs=174.8

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceeccccc-CC--c-------------------hhcccc-----CCCCCCeEEEecCCC
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--K-------------------KHCLDF-----NAEEHPIAFQVGDNE   56 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~-------------------~~~l~~-----~~~~~p~~~Ql~g~~   56 (311)
                      ++..||.++...| .+.++|++++.+... +.  +                   ..+++.     +..+.|+++||+|++
T Consensus        22 ~~~~~~~~~~~g~-~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~  100 (296)
T cd04740          22 FGEELSRVADLGK-LGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGST  100 (296)
T ss_pred             CHHHHHHHHhcCC-ceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCC
Confidence            6778999998877 489999999977544 21  1                   112211     335789999999999


Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      +++|+++|++++++|+|+||||++||+.+    +.|+.++++|+++.+|++++++.+++||+||++...+      +..+
T Consensus       101 ~~~~~~~a~~~~~~G~d~iElN~~cP~~~----~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~------~~~~  170 (296)
T cd04740         101 VEEFVEVAEKLADAGADAIELNISCPNVK----GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVT------DIVE  170 (296)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCch------hHHH
Confidence            99999999999999999999999999975    3488899999999999999999999999999986432      3578


Q ss_pred             HHHHHHHcCCCEEEEecCcc---------c------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         137 FVGTVSSAGCRTFIVHARNA---------F------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~---------~------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +++.++++|+|+|+++.++.         .      ..|++|+   ...+..|++++++++.+ ++|||++|||.|++|+
T Consensus       171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~---~~~~~~~~~i~~i~~~~-~ipii~~GGI~~~~da  246 (296)
T cd04740         171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGP---AIKPIALRMVYQVYKAV-EIPIIGVGGIASGEDA  246 (296)
T ss_pred             HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCc---ccchHHHHHHHHHHHhc-CCCEEEECCCCCHHHH
Confidence            99999999999999864321         0      1345554   22345789999999998 8999999999999999


Q ss_pred             HHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         202 DLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+++.. ||+||+||+++.+||+++++.+.
T Consensus       247 ~~~l~~GAd~V~igra~l~~p~~~~~i~~~  276 (296)
T cd04740         247 LEFLMAGASAVQVGTANFVDPEAFKEIIEG  276 (296)
T ss_pred             HHHHHcCCCEEEEchhhhcChHHHHHHHHH
Confidence            999976 99999999999999999988754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=100.00  E-value=7e-33  Score=268.92  Aligned_cols=201  Identities=16%  Similarity=0.220  Sum_probs=167.1

Q ss_pred             cEEEecceeccccc-C-C-chhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc
Q psy2386          19 SWLYTEMFTTQAIL-G-N-KKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI   94 (311)
Q Consensus        19 ~l~~temv~a~~l~-~-~-~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~   94 (311)
                      ++..+||++++++. . . ..++++.. .+.|+++||+|+ ++++|+++|+.+++.|+|+||||+|||+ ++..++.|++
T Consensus        71 g~~n~~~~s~~~~~~~~~~~~~~~~~~-~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~-~~~~~~~g~~  148 (420)
T PRK08318         71 GFNNIELITDRPLEVNLREIRRVKRDY-PDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPH-GMSERGMGSA  148 (420)
T ss_pred             cccCcccccccCHHHHHHHHHHHHhhC-CCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-CccccCCccc
Confidence            56778888877775 1 1 12232222 358999999999 9999999999999999999999999999 4556679999


Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE---------------------Eec
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI---------------------VHA  153 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it---------------------vh~  153 (311)
                      ++++|+.+.+|++++++.+++||+||+|...++      +.++++.++++|+|+|+                     +|+
T Consensus       149 ~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~------~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~  222 (420)
T PRK08318        149 VGQVPELVEMYTRWVKRGSRLPVIVKLTPNITD------IREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNG  222 (420)
T ss_pred             ccCCHHHHHHHHHHHHhccCCcEEEEcCCCccc------HHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecC
Confidence            999999999999999999999999999974332      57899999999999999                     355


Q ss_pred             CccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHh
Q psy2386         154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDL  229 (311)
Q Consensus       154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~  229 (311)
                      |+. .+||||+   ...|..|++|+++++.+  +++|||+||||.|++|+.+++.. ||+||||||++. +|.++.++.+
T Consensus       223 ~~~-~gg~SG~---a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~  298 (420)
T PRK08318        223 KSS-HGGYCGP---AVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMIS  298 (420)
T ss_pred             CCC-cccccch---hhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHH
Confidence            554 6788887   33455799999999986  26999999999999999999976 999999999977 8999988876


Q ss_pred             hh
Q psy2386         230 NY  231 (311)
Q Consensus       230 ~~  231 (311)
                      .+
T Consensus       299 ~L  300 (420)
T PRK08318        299 GL  300 (420)
T ss_pred             HH
Confidence            54

>KOG2334|consensus

Probab=99.98  E-value=3e-31  Score=246.47  Aligned_cols=236  Identities=19%  Similarity=0.304  Sum_probs=198.6

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceeccccc-C----Cc-h------------hccccCCC-CCCeEEEecCCCHHHHHH
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G----NK-K------------HCLDFNAE-EHPIAFQVGDNEPKKLAK   62 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~----~~-~------------~~l~~~~~-~~p~~~Ql~g~~~~~~~~   62 (311)
                      .+.++|.|.||-+||+ +++|||-|....|+ +    +. .            ..+..+|. ...++.|++.++++.-.+
T Consensus        20 r~G~lpmrLLal~~Ga-dlv~~peIVdkKLIe~ir~~NealgtIDfv~p~~~~vvfr~~~~e~~rlilQ~gT~sa~lA~e   98 (477)
T KOG2334|consen   20 RAGELPMRLLALQYGA-DLVYTPEIVDKKLIECIRVENEALGTIDFVDPSDSTVVFRTCPAENSRLILQIGTASAELALE   98 (477)
T ss_pred             HhccchHHHHHHHhcc-ceecChhhhhHHHHhccccccccccceeeecCCcceEEEEechhhcCeEEEEecCCcHHHHHH
Confidence            4678999999999995 99999999988776 3    11 0            12222333 456999999999999999


Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      +|+++.. .+.+||+|||||-.+.+..|+|++|+.+|+.+..|+.++.+...+||++|||+-.+..+    +.++++++.
T Consensus        99 ~A~lv~n-DvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s~ed----tL~lv~ri~  173 (477)
T KOG2334|consen   99 AAKLVDN-DVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDSKED----TLKLVKRIC  173 (477)
T ss_pred             HHHHhhc-ccccccccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCCccc----HHHHHHHHH
Confidence            9998887 48999999999999999999999999999999999999999999999999997655543    579999999


Q ss_pred             HcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC---HHHHHHHHhh--cCEEEEehhh
Q psy2386         143 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT---KKEIDLHLNY--IDGVMLGREA  217 (311)
Q Consensus       143 ~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s---~~da~~~l~~--adgVmigRa~  217 (311)
                      +.|+.+|+||+||.        +.+...|++-++++++.+.++.+|||.||++.+   ..|+....+.  +|+|||+|++
T Consensus       174 ~tgi~ai~vh~rt~--------d~r~~~~~~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A  245 (477)
T KOG2334|consen  174 ATGIAAITVHCRTR--------DERNQEPATKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAA  245 (477)
T ss_pred             hcCCceEEEEeecc--------ccCCCCCCCHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhh
Confidence            99999999999996        455667788999999999986699999999999   5666655544  9999999999


Q ss_pred             hhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCC
Q psy2386         218 YKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNK  262 (311)
Q Consensus       218 l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  262 (311)
                      ..||.+|.+       +    ..++..+.+..|+++...+.. +|.
T Consensus       246 ~~n~SiF~~-------e----G~~~~~~~~~~fl~~a~~~dn~~~n  280 (477)
T KOG2334|consen  246 ESNPSIFRE-------E----GCLSEKEVIREFLRLAVQYDNHYGN  280 (477)
T ss_pred             hcCCceeee-------c----CCchHHHHHHHHHHHHHHHhhcccc
Confidence            999999964       1    256788899999988887766 664

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=99.97  E-value=1.5e-30  Score=242.12  Aligned_cols=174  Identities=20%  Similarity=0.311  Sum_probs=149.8

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.|+++||+|+++++|+++|+.++++| +|+||||++||+..    +.|..+.++++++.++++++++.+++||+||++
T Consensus        90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~----~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~  165 (301)
T PRK07259         90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVK----HGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLT  165 (301)
T ss_pred             cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCC----CCccccccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            4789999999999999999999999999 99999999999853    227889999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---------------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---------------FLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---------------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      ...+      +..++++.++++|+|.|+++.++.               ...|++|+   ...+..+++++++++.+ ++
T Consensus       166 ~~~~------~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~---~~~p~~l~~v~~i~~~~-~i  235 (301)
T PRK07259        166 PNVT------DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGP---AIKPIALRMVYQVYQAV-DI  235 (301)
T ss_pred             CCch------hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCc---CcccccHHHHHHHHHhC-CC
Confidence            6432      357899999999999999864321               12345554   23456899999999998 89


Q ss_pred             eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         188 EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       188 pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      |||++|||.|++|+.+++.. ||+||+||+++.+|++++++.+.+
T Consensus       236 pvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l  280 (301)
T PRK07259        236 PIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGL  280 (301)
T ss_pred             CEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHH
Confidence            99999999999999999976 999999999999999999887543

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=99.97  E-value=5.5e-30  Score=236.96  Aligned_cols=174  Identities=21%  Similarity=0.264  Sum_probs=150.0

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      .+.|+++||+|++++++.++|+.+.++|+|+||||++||+.+.     |..++++++.+.++++++++.+++||+||++.
T Consensus        97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~-----~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~  171 (289)
T cd02810          97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGG-----GRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP  171 (289)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCC-----CcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence            4789999999999999999999999999999999999998642     44588999999999999999999999999998


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc---------------cccCCCCcCCCCCcCcHHHHHHHHHhCC-CC
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLKKDFP-EL  187 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~---------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~i  187 (311)
                      +++.+    +..++++.++++|+|+|++|+++..               ..|++|.   ...+..+++++++++.++ ++
T Consensus       172 ~~~~~----~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~---~~~~~~~~~v~~i~~~~~~~i  244 (289)
T cd02810         172 YFDLE----DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA---PIRPLALRWVARLAARLQLDI  244 (289)
T ss_pred             CCCHH----HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH---HHHHHHHHHHHHHHHhcCCCC
Confidence            76532    4689999999999999999987531               1233332   122346889999999885 79


Q ss_pred             eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHh
Q psy2386         188 EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDL  229 (311)
Q Consensus       188 pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~  229 (311)
                      |||++|||.|++|+.+++.. ||+||+||+++.| ||+++++.+
T Consensus       245 piia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~i~~  288 (289)
T cd02810         245 PIIGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRKIKK  288 (289)
T ss_pred             CEEEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHHHhc
Confidence            99999999999999999987 9999999999999 999999864

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=99.96  E-value=3.8e-29  Score=231.85  Aligned_cols=175  Identities=16%  Similarity=0.133  Sum_probs=144.8

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHc---CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKW---GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~---g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      .+.|+++||+|+ ++++.++++.+++.   |+|+||||+|||+..     .+..+.++|+.+.+|++++++.+++||+||
T Consensus        90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~iPv~vK  163 (294)
T cd04741          90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVP-----GKPPPAYDFDATLEYLTAVKAAYSIPVGVK  163 (294)
T ss_pred             cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCC-----CcccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            578999999999 99999999988875   699999999999952     223577899999999999999999999999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHc--CCCEEEE----------ec-Ccc-------ccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSA--GCRTFIV----------HA-RNA-------FLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~--G~~~itv----------h~-Rt~-------~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      +|++++..    ++.++++.+.++  |+++|++          |. |+.       .+.|+||+   ...+..+++|+++
T Consensus       164 l~p~~~~~----~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~---~i~~~al~~v~~~  236 (294)
T cd04741         164 TPPYTDPA----QFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGA---YLHPLALGNVRTF  236 (294)
T ss_pred             eCCCCCHH----HHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCch---hhHHHHHHHHHHH
Confidence            99987542    357888989898  9999994          53 221       12355554   2334456788999


Q ss_pred             HHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386         181 KKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY  231 (311)
Q Consensus       181 ~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~  231 (311)
                      ++.++ ++|||+||||.|.+|+.+++.. ||+||+|||++. +||+|+++.+.+
T Consensus       237 ~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L  290 (294)
T cd04741         237 RRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFARIEKEL  290 (294)
T ss_pred             HHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHHHHHHHH
Confidence            88874 4999999999999999999986 999999999985 999999998765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=99.96  E-value=1.9e-28  Score=231.72  Aligned_cols=225  Identities=20%  Similarity=0.213  Sum_probs=173.8

Q ss_pred             CCHHHHHHHH-HhCCCcEEEecceeccccc----CC----ch-------hccc-cCCCCCCeEEEec--CC---------
Q psy2386           4 TDRHCRMFHR-QITRYSWLYTEMFTTQAIL----GN----KK-------HCLD-FNAEEHPIAFQVG--DN---------   55 (311)
Q Consensus         4 td~~fR~l~~-~~g~~~l~~temv~a~~l~----~~----~~-------~~l~-~~~~~~p~~~Ql~--g~---------   55 (311)
                      |+...+.+-+ .-|..++++||.+..+.--    +.    .+       ++.+ .|..+.++++||+  |.         
T Consensus        32 t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~  111 (343)
T cd04734          32 SERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWL  111 (343)
T ss_pred             CHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCC
Confidence            5555555553 2244689999998765321    10    11       1111 2566778899986  10         


Q ss_pred             ------C---------------------HHHHHHHHHHHHHcCCCEEEecc--C-------CCccccccCcccCcccCCh
Q psy2386          56 ------E---------------------PKKLAKSAKIIQKWGYDEINLNC--G-------CPSNRVQNGFFGAILMTKP   99 (311)
Q Consensus        56 ------~---------------------~~~~~~aa~~~~~~g~d~IdiN~--g-------CP~~~v~~~~~G~~Ll~~~   99 (311)
                            +                     .++|++||+++.++|||+||||+  |       ||..|.++++||++|+++.
T Consensus       112 ~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~  191 (343)
T cd04734         112 PPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRM  191 (343)
T ss_pred             cccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHh
Confidence                  0                     26799999999999999999999  4       7889999999999999999


Q ss_pred             HHHHHHHHHHhccccceeEEEEeccCCCC----CcHHHHHHHHHHHHHcC-CCEEEEecCccccc-c---CCCCcCCCCC
Q psy2386         100 LLVSDCIKAMRDSVEIDITVKHRIGIDDI----NSYDFVRDFVGTVSSAG-CRTFIVHARNAFLK-K---LNPKQNRKIP  170 (311)
Q Consensus       100 ~~~~~iv~~v~~~~~~pvsvKiR~g~~~~----~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~-G---~~g~~~~~~~  170 (311)
                      +++.+|+++||++++.+++||+|+++++.    .+.++..++++.|+++| +|+|+||+++.... +   ..+ ...+.+
T Consensus       192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~-~~~~~~  270 (343)
T cd04734         192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVP-SMGMPP  270 (343)
T ss_pred             HHHHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccC-CCCCCc
Confidence            99999999999999999999999987653    23457889999999998 89999976542111 0   011 111223


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ..+|+.++++++.+ ++||++||||.|++++.++++.  ||+||+||+++.|||+++++.+.
T Consensus       271 ~~~~~~~~~ik~~~-~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~g  331 (343)
T cd04734         271 GPFLPLAARIKQAV-DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKAREG  331 (343)
T ss_pred             chhHHHHHHHHHHc-CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHHHcC
Confidence            34689999999998 8999999999999999999985  99999999999999999998753

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=99.95  E-value=1e-27  Score=225.45  Aligned_cols=173  Identities=15%  Similarity=0.185  Sum_probs=145.6

Q ss_pred             CCCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--
Q psy2386          44 EEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--  114 (311)
Q Consensus        44 ~~~p~~~Ql~g~~-------~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--  114 (311)
                      .+.|+++||+|++       .++|+++++.+.+. +|+||||++||+..      |...+++|+.+.++++++++.++  
T Consensus       127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~-ad~ielN~scP~~~------g~~~~~~~~~~~~iv~av~~~~~~~  199 (327)
T cd04738         127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY-ADYLVVNVSSPNTP------GLRDLQGKEALRELLTAVKEERNKL  199 (327)
T ss_pred             CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC------ccccccCHHHHHHHHHHHHHHHhhc
Confidence            4789999999997       68899999888774 89999999999863      34458999999999999999886  


Q ss_pred             ---ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHH
Q psy2386         115 ---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYN  179 (311)
Q Consensus       115 ---~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~  179 (311)
                         +||+||++.+++.    ++..++++.++++|+|+|++|+|+..            .+|+||+.   ..+..|+++++
T Consensus       200 ~~~~Pv~vKl~~~~~~----~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~---~~~~~l~~v~~  272 (327)
T cd04738         200 GKKVPLLVKIAPDLSD----EELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAP---LKERSTEVLRE  272 (327)
T ss_pred             ccCCCeEEEeCCCCCH----HHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChh---hhHHHHHHHHH
Confidence               9999999987653    24678999999999999999998631            23566542   22356899999


Q ss_pred             HHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         180 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       180 i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      +++.++ ++||+++|||.|++|+.+++.. ||+|||||+++. +||++.++.+.
T Consensus       273 l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~~  326 (327)
T cd04738         273 LYKLTGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLVKRIKRE  326 (327)
T ss_pred             HHHHhCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHHHHHHhc
Confidence            999874 5999999999999999999976 999999999976 59999998753

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=99.95  E-value=2.3e-27  Score=223.46  Aligned_cols=170  Identities=13%  Similarity=0.150  Sum_probs=146.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC--C
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI--D  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~--~  126 (311)
                      ++|++||++++++|||+||||+|         ||..|.+.+.||++|.++.+++.||+++||++++.||+||++...  .
T Consensus       142 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~  221 (337)
T PRK13523        142 LAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP  221 (337)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            67999999999999999999999         899999999999999999999999999999999999999999731  1


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                      ...+.++..++++.++++|+|+|+||+++.. ..   +.+.+ +..+|++++++++.+ ++||+++|+|.|++++.++++
T Consensus       222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~-~~---~~~~~-~~~~~~~~~~ik~~~-~ipVi~~G~i~~~~~a~~~l~  295 (337)
T PRK13523        222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVV-PA---RIDVY-PGYQVPFAEHIREHA-NIATGAVGLITSGAQAEEILQ  295 (337)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CC---CCCCC-ccccHHHHHHHHhhc-CCcEEEeCCCCCHHHHHHHHH
Confidence            1223567889999999999999999998631 10   01111 223788999999998 899999999999999999998


Q ss_pred             h--cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         207 Y--IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      .  ||+|++||+++.||++++++.+.+..
T Consensus       296 ~g~~D~V~~gR~~iadP~~~~k~~~~~~~  324 (337)
T PRK13523        296 NNRADLIFIGRELLRNPYFPRIAAKELGF  324 (337)
T ss_pred             cCCCChHHhhHHHHhCccHHHHHHHHcCC
Confidence            5  99999999999999999999887654

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.95  E-value=2e-27  Score=224.88  Aligned_cols=174  Identities=15%  Similarity=0.153  Sum_probs=146.6

Q ss_pred             CCCCeEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--
Q psy2386          44 EEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--  114 (311)
Q Consensus        44 ~~~p~~~Ql~g~-------~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--  114 (311)
                      .+.|+++||+|+       ..++|++.++.+.+ ++|+||||++||+.+      |...+++++.+.+|+++|++.++  
T Consensus       136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~------g~~~~~~~~~~~eiv~aVr~~~~~~  208 (344)
T PRK05286        136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTP------GLRDLQYGEALDELLAALKEAQAEL  208 (344)
T ss_pred             CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHhcc
Confidence            468999999987       57899999998877 599999999999875      34458999999999999999987  


Q ss_pred             ---ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHH
Q psy2386         115 ---IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYN  179 (311)
Q Consensus       115 ---~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~  179 (311)
                         +||+||++.+++.+    ++.++++.++++|+|+|++|+|+..            .+|+||+.   ..+..|+++++
T Consensus       209 ~~~~PV~vKlsp~~~~~----~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~---~~~~~l~~v~~  281 (344)
T PRK05286        209 HGYVPLLVKIAPDLSDE----ELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRP---LFERSTEVIRR  281 (344)
T ss_pred             ccCCceEEEeCCCCCHH----HHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHH---HHHHHHHHHHH
Confidence               99999999875532    4689999999999999999998631            23555542   23458999999


Q ss_pred             HHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386         180 LKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY  231 (311)
Q Consensus       180 i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~  231 (311)
                      +++.++ ++|||++|||.|++|+.+++.. ||+||+||+++. +||+++++.+.+
T Consensus       282 l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L  336 (344)
T PRK05286        282 LYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGL  336 (344)
T ss_pred             HHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHH
Confidence            999874 5999999999999999999976 999999999976 599999987643

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=99.94  E-value=2.6e-26  Score=215.66  Aligned_cols=172  Identities=16%  Similarity=0.173  Sum_probs=143.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+++||+|+++++|.++|+.++++|+|+||||++||...  .+.+|+.+   ++.+.++++++++.+++||+||++..
T Consensus        99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~--~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~  173 (325)
T cd04739          99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD--PDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPF  173 (325)
T ss_pred             CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC--CCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCC
Confidence            68999999999999999999999999999999999996422  24455544   57899999999999999999999975


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      .+      +..++++.++++|+|+|++|+|+..            ..|+||+.   ..+..+++++++++.+ ++|||++
T Consensus       174 ~~------~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~---~~~~al~~v~~v~~~~-~ipIig~  243 (325)
T cd04739         174 FS------ALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPA---EIRLPLRWIAILSGRV-KASLAAS  243 (325)
T ss_pred             cc------CHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCcc---chhHHHHHHHHHHccc-CCCEEEE
Confidence            43      2578999999999999999998621            13455542   2345688999999987 8999999


Q ss_pred             cCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhhh
Q psy2386         193 GGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLNY  231 (311)
Q Consensus       193 GgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~~  231 (311)
                      |||.|++|+.+++.. ||+||+||+++. +|.++.++.+.+
T Consensus       244 GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L  284 (325)
T cd04739         244 GGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGL  284 (325)
T ss_pred             CCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHH
Confidence            999999999999976 999999999988 598887776543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=99.94  E-value=2.6e-26  Score=216.95  Aligned_cols=167  Identities=18%  Similarity=0.304  Sum_probs=139.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec---
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI---  123 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~---  123 (311)
                      ++|++||++++++|||+||||+||         |..|.+++.||++|+++++++.+|+++||+++  +.||.+|++.   
T Consensus       149 ~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~  228 (338)
T cd04733         149 DRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF  228 (338)
T ss_pred             HHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc
Confidence            679999999999999999999997         99999999999999999999999999999998  4799999973   


Q ss_pred             ---cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCC--CCcCC-CCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         124 ---GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN--PKQNR-KIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       124 ---g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~--g~~~~-~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                         ||+    .++..++++.|++.|+|+|.||+++.......  +.... ..+...++.++++++.+ ++||+++|+|.|
T Consensus       229 ~~~g~~----~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~t  303 (338)
T cd04733         229 QRGGFT----EEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-KTPLMVTGGFRT  303 (338)
T ss_pred             CCCCCC----HHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc-CCCEEEeCCCCC
Confidence               443    34578999999999999999999873111100  00000 11123468888999998 899999999999


Q ss_pred             HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++++.++++.  ||+|++||+++.|||+++++++
T Consensus       304 ~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~~  337 (338)
T cd04733         304 RAAMEQALASGAVDGIGLARPLALEPDLPNKLLA  337 (338)
T ss_pred             HHHHHHHHHcCCCCeeeeChHhhhCccHHHHHhc
Confidence            9999999985  9999999999999999998763

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=99.94  E-value=8.8e-26  Score=216.35  Aligned_cols=171  Identities=14%  Similarity=0.203  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEecc---CC-------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNC---GC-------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG-  124 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~---gC-------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g-  124 (311)
                      ++|++||++++++|||+||||+   ||       |..|.+.+.||++|+++++++.+|+++||+++  +.||+||++.. 
T Consensus       150 ~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~  229 (382)
T cd02931         150 GKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS  229 (382)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence            5799999999999999999998   86       78999999999999999999999999999998  57999999951 


Q ss_pred             ----CCC-----------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         125 ----IDD-----------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       125 ----~~~-----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                          ++.           ..+.++..++++.++++|+|+|+||+++....-++.+.....+...+++++++++.+ ++||
T Consensus       230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pv  308 (382)
T cd02931         230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-DVPV  308 (382)
T ss_pred             hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHC-CCCE
Confidence                111           123457789999999999999999988731110111111111123467889999998 8999


Q ss_pred             EEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         190 IINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       190 i~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++|+|++++++.++++.  ||+|++||+++.|||+++++++
T Consensus       309 i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~  350 (382)
T cd02931         309 IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKIRR  350 (382)
T ss_pred             EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence            999999999999999985  9999999999999999999875

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.93  E-value=2.7e-25  Score=209.68  Aligned_cols=160  Identities=15%  Similarity=0.201  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccCC-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGID-  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~~-  126 (311)
                      +.|++||++++++|||+||||+||         |..|.+.+.||++|.++.+++.||+++||++++. ||++|++.... 
T Consensus       152 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~  231 (338)
T cd02933         152 ADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF  231 (338)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence            679999999999999999999999         9999999999999999999999999999999855 89999986311 


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         127 ----DINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       127 ----~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                          ...+.++..++++.|++.|+|+|.| |+++....          +..++++++++++.+ ++||+++|+|. ++++
T Consensus       232 ~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~----------~~~~~~~~~~ik~~~-~ipvi~~G~i~-~~~a  299 (338)
T cd02933         232 NDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP----------EDQPPDFLDFLRKAF-KGPLIAAGGYD-AESA  299 (338)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc----------cccchHHHHHHHHHc-CCCEEEECCCC-HHHH
Confidence                1224567889999999999999999 56642100          346889999999998 89999999997 9999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .++++.  ||+|++||+++.|||+++++.+
T Consensus       300 ~~~l~~g~~D~V~~gR~~ladP~~~~k~~~  329 (338)
T cd02933         300 EAALADGKADLVAFGRPFIANPDLVERLKN  329 (338)
T ss_pred             HHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence            999985  9999999999999999999875

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=99.93  E-value=1.1e-25  Score=213.78  Aligned_cols=166  Identities=15%  Similarity=0.197  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc----ceeEEEEecc
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE----IDITVKHRIG  124 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~----~pvsvKiR~g  124 (311)
                      ++|++||++++++|||+||||++         ||..|.+++.||++|.++.+++.||+++||++++    .++.|++|++
T Consensus       144 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s  223 (353)
T cd04735         144 DAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS  223 (353)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence            67999999999999999999986         8999999999999999999999999999999987    6788888887


Q ss_pred             CCCC----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHH
Q psy2386         125 IDDI----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKK  199 (311)
Q Consensus       125 ~~~~----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~  199 (311)
                      +++.    .+.++..++++.+++.|+|+|+||+.+....      ..+.+...++.+..+++.+ +++||++||||+|++
T Consensus       224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~------~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e  297 (353)
T cd04735         224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK------SRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPD  297 (353)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc------cccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHH
Confidence            6542    2345788999999999999999998653111      1112223566677777765 269999999999999


Q ss_pred             HHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         200 EIDLHLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++.++++. ||+|++||+++.||++++++.+
T Consensus       298 ~ae~~l~~gaD~V~~gR~liadPdl~~k~~~  328 (353)
T cd04735         298 DALEALETGADLVAIGRGLLVDPDWVEKIKE  328 (353)
T ss_pred             HHHHHHHcCCChHHHhHHHHhCccHHHHHHc
Confidence            99999987 9999999999999999999875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=99.93  E-value=4.7e-25  Score=207.36  Aligned_cols=171  Identities=16%  Similarity=0.186  Sum_probs=142.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~  126 (311)
                      ++|++||++++++|||+||||+|         ||..|.+.+.||++++++++++.++++++++.+  ++||.||++....
T Consensus       141 ~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~  220 (327)
T cd02803         141 EDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF  220 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc
Confidence            67999999999999999999998         898899999999999999999999999999998  7899999997532


Q ss_pred             C--CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         127 D--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       127 ~--~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      .  ..+.++..++++.+++.|+|+|++|+++..............+..+++.++++++.+ ++||+++|+|.|++++.++
T Consensus       221 ~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~~~a~~~  299 (327)
T cd02803         221 VPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-KIPVIAVGGIRDPEVAEEI  299 (327)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC-CCCEEEeCCCCCHHHHHHH
Confidence            2  123456789999999999999999988742111000000112345788999999998 8999999999999999999


Q ss_pred             Hhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         205 LNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       205 l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++.  ||+|++||+++.||++++++.+
T Consensus       300 l~~g~aD~V~igR~~ladP~l~~k~~~  326 (327)
T cd02803         300 LAEGKADLVALGRALLADPDLPNKARE  326 (327)
T ss_pred             HHCCCCCeeeecHHHHhCccHHHHHhc
Confidence            975  9999999999999999998763

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.93  E-value=5.2e-25  Score=207.78  Aligned_cols=171  Identities=16%  Similarity=0.171  Sum_probs=140.7

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+++||+|++++++.++|+.++++|+|+||||++||....  +..|..   .++.+.++++++++.+++||+||++.+
T Consensus       101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~--~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~  175 (334)
T PRK07565        101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDP--DISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPY  175 (334)
T ss_pred             CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC--CCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence            589999999999999999999999999999999999976542  223432   356788999999999999999999976


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      ++      +..++++.++++|+|+|++|+|+..            ..|+||+   ...+..|++++++++.+ ++|||++
T Consensus       176 ~~------~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~---~~~~~al~~v~~~~~~~-~ipIig~  245 (334)
T PRK07565        176 FS------NLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP---AELRLPLRWIAILSGRV-GADLAAT  245 (334)
T ss_pred             ch------hHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc---hhhhHHHHHHHHHHhhc-CCCEEEE
Confidence            53      2468899999999999999988621            1245544   23344678899999988 8999999


Q ss_pred             cCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386         193 GGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN  230 (311)
Q Consensus       193 GgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~  230 (311)
                      |||+|++|+.+++.. ||+||+||+++.+ |.++.++.+.
T Consensus       246 GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~  285 (334)
T PRK07565        246 TGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRG  285 (334)
T ss_pred             CCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHH
Confidence            999999999999976 9999999999885 8777666544

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=99.93  E-value=8e-25  Score=206.71  Aligned_cols=165  Identities=17%  Similarity=0.255  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccC-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGI-  125 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~-  125 (311)
                      ++|++||+++.++|||+||||+||         |..|.+.++||++|+++++++.+|+++||+++  ++||++|++... 
T Consensus       154 ~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~  233 (336)
T cd02932         154 DAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW  233 (336)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc
Confidence            679999999999999999999987         88999999999999999999999999999999  789999999521 


Q ss_pred             -CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC-CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         126 -DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI-PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       126 -~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~-~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                       ....+.++..++++.+++.|+|+|+||....     ++...... +..+++.++++++.+ ++||+++|+|.|++++.+
T Consensus       234 ~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~-----~~~~~~~~~~~~~~~~~~~ir~~~-~iPVi~~G~i~t~~~a~~  307 (336)
T cd02932         234 VEGGWDLEDSVELAKALKELGVDLIDVSSGGN-----SPAQKIPVGPGYQVPFAERIRQEA-GIPVIAVGLITDPEQAEA  307 (336)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-----CcccccCCCccccHHHHHHHHhhC-CCCEEEeCCCCCHHHHHH
Confidence             1112245678999999999999999985421     11110111 223568889999998 899999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      +++.  ||+||+||+++.||++..++.
T Consensus       308 ~l~~g~aD~V~~gR~~i~dP~~~~k~~  334 (336)
T cd02932         308 ILESGRADLVALGRELLRNPYWPLHAA  334 (336)
T ss_pred             HHHcCCCCeehhhHHHHhCccHHHHHh
Confidence            9985  999999999999999998765

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=99.93  E-value=6.7e-25  Score=209.46  Aligned_cols=169  Identities=14%  Similarity=0.151  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      ++|++||++++++|||+||||+||         |..|.+.+.||++|+++.+++.||+++||++++.++.|++|++.++.
T Consensus       150 ~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~  229 (370)
T cd02929         150 RWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDEL  229 (370)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence            679999999999999999999999         99999999999999999999999999999999888888888875431


Q ss_pred             ------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         129 ------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       129 ------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                            .+.++..++++.+++. +|++.++.......+..  ...+.....|++++++++.+ ++||+++|+|.+++++.
T Consensus       230 ~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~--~~~~~~~~~~~~~~~ik~~~-~~pvi~~G~i~~~~~~~  305 (370)
T cd02929         230 IGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGED--SRFYPEGHQEPYIKFVKQVT-SKPVVGVGRFTSPDKMV  305 (370)
T ss_pred             cCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccc--cccCCccccHHHHHHHHHHC-CCCEEEeCCCCCHHHHH
Confidence                  2355678899999876 79998875431111111  01112234678899999998 89999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.  ||+|++||+++.|||+++++++.
T Consensus       306 ~~l~~g~~D~V~~gR~~ladP~l~~k~~~g  335 (370)
T cd02929         306 EVVKSGILDLIGAARPSIADPFLPKKIREG  335 (370)
T ss_pred             HHHHcCCCCeeeechHhhhCchHHHHHHcC
Confidence            99985  99999999999999999999763

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=99.92  E-value=1.2e-24  Score=206.30  Aligned_cols=163  Identities=19%  Similarity=0.262  Sum_probs=138.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~  126 (311)
                      ++|++||++++++|||+||||++|         |..|.++++||++|.++.+++.||+++||+++  +.||.||++. |+
T Consensus       144 ~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~-~~  222 (361)
T cd04747         144 AAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ-WK  222 (361)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc-cc
Confidence            479999999999999999999999         99999999999999999999999999999998  4899999984 32


Q ss_pred             --C-----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC----
Q psy2386         127 --D-----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI----  195 (311)
Q Consensus       127 --~-----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI----  195 (311)
                        +     ..+.++..++++.+++.|+|+|.+..+..+..       .+. ..++++++++++.+ ++||+++|+|    
T Consensus       223 ~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~-------~~~-~~~~~~~~~~k~~~-~~pv~~~G~i~~~~  293 (361)
T cd04747         223 QQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEP-------EFE-GSELNLAGWTKKLT-GLPTITVGSVGLDG  293 (361)
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCC-------CcC-ccchhHHHHHHHHc-CCCEEEECCccccc
Confidence              1     13445678899999999999988765421111       111 23678888899988 7999999999    


Q ss_pred             --------------CCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         196 --------------KTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       196 --------------~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                                    .|++++.++++.  ||+|++||+++.|||+++++.+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~g  344 (361)
T cd04747         294 DFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKVREG  344 (361)
T ss_pred             ccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHHHcC
Confidence                          699999999985  99999999999999999998753

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=99.92  E-value=1e-24  Score=207.26  Aligned_cols=170  Identities=16%  Similarity=0.250  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      ++|++||+++.++|||+||||.+         ||..|.+++.||++|+++++++.+|+++||++++.++.|++|+++.+.
T Consensus       137 ~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~  216 (353)
T cd02930         137 EDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDL  216 (353)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccccc
Confidence            67999999999999999999865         999999999999999999999999999999999888888888876532


Q ss_pred             ----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         129 ----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       129 ----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                          .+.++..++++.|+++|+|+|+|....  .....+....+.++.. .+..+++++.+ ++||+++|+|.|++++.+
T Consensus       217 ~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~--~e~~~~~~~~~~~~~~~~~~~~~ik~~v-~iPVi~~G~i~~~~~a~~  293 (353)
T cd02930         217 VEGGSTWEEVVALAKALEAAGADILNTGIGW--HEARVPTIATSVPRGAFAWATAKLKRAV-DIPVIASNRINTPEVAER  293 (353)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEeCCCc--CCCCCccccccCCchhhHHHHHHHHHhC-CCCEEEcCCCCCHHHHHH
Confidence                245578899999999999999995321  1000000111122233 35678999998 899999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      +++.  ||+||+||+++.|||+++++++.
T Consensus       294 ~i~~g~~D~V~~gR~~l~dP~~~~k~~~g  322 (353)
T cd02930         294 LLADGDADMVSMARPFLADPDFVAKAAAG  322 (353)
T ss_pred             HHHCCCCChhHhhHHHHHCccHHHHHHhC
Confidence            9985  99999999999999999998763

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=99.91  E-value=8.4e-24  Score=201.15  Aligned_cols=178  Identities=13%  Similarity=0.154  Sum_probs=146.4

Q ss_pred             CCCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.|+|++|+| .++++|.+.|+.++++|+|+||||++||+....++ .|..+.++|+.+.+|++++++.+++||.||+.
T Consensus       112 ~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~-~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs  190 (385)
T PLN02495        112 PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERK-MGAAVGQDCDLLEEVCGWINAKATVPVWAKMT  190 (385)
T ss_pred             CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCc-cchhhccCHHHHHHHHHHHHHhhcCceEEEeC
Confidence            36899999977 89999999999999999999999999999765443 68899999999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------ccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------FLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      ...++      +.++++.++++|+|+|++..++.                    ...|+||+   ..+|.....++++++
T Consensus       191 Pn~t~------i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~---alkpiAl~~v~~i~~  261 (385)
T PLN02495        191 PNITD------ITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSK---AVRPIALAKVMAIAK  261 (385)
T ss_pred             CChhh------HHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccch---hhhHHHHHHHHHHHH
Confidence            75543      57899999999999998754321                    12344443   233444556666776


Q ss_pred             hCC-----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhhh
Q psy2386         183 DFP-----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLNY  231 (311)
Q Consensus       183 ~~~-----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~~  231 (311)
                      .+.     ++||++.|||.|.+|+.+++.. |+.|+++++++.+ |.++.++.+.|
T Consensus       262 ~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L  317 (385)
T PLN02495        262 MMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAEL  317 (385)
T ss_pred             HHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHH
Confidence            642     4999999999999999999976 9999999999888 99998877654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=99.91  E-value=2.9e-23  Score=215.11  Aligned_cols=166  Identities=16%  Similarity=0.234  Sum_probs=137.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec-cC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI-GI  125 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~-g~  125 (311)
                      ++|++||+++.++|||+||||+|         ||..|.+++.||++|.++.+++.||+++||+++  +.||++|++. +|
T Consensus       551 ~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~  630 (765)
T PRK08255        551 DDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW  630 (765)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence            67999999999999999999999         999999999999999999999999999999987  5799999996 34


Q ss_pred             CCC-CcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         126 DDI-NSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       126 ~~~-~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      .+. .+.++..++++.|++.|+|+|+||+ ++.. .. .+   .+.+....++.+++++.+ ++||++||+|+|++++.+
T Consensus       631 ~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~-~~-~~---~~~~~~~~~~~~~ik~~~-~~pv~~~G~i~~~~~a~~  704 (765)
T PRK08255        631 VEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSK-DE-KP---VYGRMYQTPFADRIRNEA-GIATIAVGAISEADHVNS  704 (765)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCc-CC-CC---CcCccccHHHHHHHHHHc-CCEEEEeCCCCCHHHHHH
Confidence            332 2345778999999999999999994 4321 10 00   011112346778899988 899999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCC-cchHHhHh
Q psy2386         204 HLNY--IDGVMLGREAYKNP-FLMSNFDL  229 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P-~i~~~~~~  229 (311)
                      +++.  ||+||+||+++.|| |+++.+.+
T Consensus       705 ~l~~g~~D~v~~gR~~l~dP~~~~~~~~~  733 (765)
T PRK08255        705 IIAAGRADLCALARPHLADPAWTLHEAAE  733 (765)
T ss_pred             HHHcCCcceeeEcHHHHhCccHHHHHHHH
Confidence            9986  99999999999999 56666554

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=99.89  E-value=1.8e-22  Score=186.01  Aligned_cols=173  Identities=20%  Similarity=0.251  Sum_probs=148.5

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.+++....+..++.+.+-+..+++++ +|+|+||.+||+.+    + |..|.++|+.+.++++++++.+.+||.||+.
T Consensus        95 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~----g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~  169 (310)
T COG0167          95 IGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTP----G-GRALGQDPELLEKLLEAVKAATKVPVFVKLA  169 (310)
T ss_pred             cCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCC----C-hhhhccCHHHHHHHHHHHHhcccCceEEEeC
Confidence            5567999999999999999999999988 89999999999964    3 7888889999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec----Cc------------cccccCCCCcCCCCCcCcHHHHHHHHHhC-C
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA----RN------------AFLKKLNPKQNRKIPILKYNFVYNLKKDF-P  185 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~----Rt------------~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~  185 (311)
                      +.+      +++.++++.++++|+|+|++..    |.            ....|+||+   ...|...++|+++.+.+ +
T Consensus       170 P~~------~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~---~ikp~al~~v~~l~~~~~~  240 (310)
T COG0167         170 PNI------TDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGP---PLKPIALRVVAELYKRLGG  240 (310)
T ss_pred             CCH------HHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcc---cchHHHHHHHHHHHHhcCC
Confidence            822      2578999999999999998753    21            014578887   45566789999999987 1


Q ss_pred             CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386         186 ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN  230 (311)
Q Consensus       186 ~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~  230 (311)
                      ++|||+.|||.|++||.+++.. |+.|+||+|++.+ |+++.++.+.
T Consensus       241 ~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~  287 (310)
T COG0167         241 DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKG  287 (310)
T ss_pred             CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHH
Confidence            4999999999999999999976 9999999999777 9999888654

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=99.89  E-value=1.4e-22  Score=189.26  Aligned_cols=175  Identities=15%  Similarity=0.085  Sum_probs=138.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.|+|+||.|.+++++.+.|+.++++| +|+||||++||+..     .+..+-.||+.+.+|++++++.+++||.||++
T Consensus        91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~-----~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKls  165 (310)
T PRK02506         91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVP-----GKPQIAYDFETTEQILEEVFTYFTKPLGVKLP  165 (310)
T ss_pred             CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCC-----CccccccCHHHHHHHHHHHHHhcCCccEEecC
Confidence            3589999999999999999999999998 89999999999852     24556678999999999999999999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec-------------Ccc-----ccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA-------------RNA-----FLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~-------------Rt~-----~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      ...+.    ..+.+.+..+.+.|++.|+...             +..     .+.|+||+   ...|...++++++.+.+
T Consensus       166 p~~~~----~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~---~i~p~al~~v~~~~~~~  238 (310)
T PRK02506        166 PYFDI----VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGD---YIKPTALANVRAFYQRL  238 (310)
T ss_pred             CCCCH----HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCch---hccHHHHHHHHHHHHhc
Confidence            86532    1234444444566776653221             111     13566776   34556778899998887


Q ss_pred             C-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         185 P-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       185 ~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      + ++|||++|||.|.+|+.+++.. ||.||++++++. +|.++.++.+.
T Consensus       239 ~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~  287 (310)
T PRK02506        239 NPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKE  287 (310)
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHH
Confidence            3 6999999999999999999976 999999999876 79988877654

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.88  E-value=2.6e-21  Score=180.02  Aligned_cols=204  Identities=14%  Similarity=0.143  Sum_probs=153.9

Q ss_pred             CHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCc
Q psy2386           5 DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPS   83 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~   83 (311)
                      +..+++.|.++|. ..++++|.+. .    .+.+....  +.|+.+||++. +++.+.++++.+.+.|++.|+||++||+
T Consensus        83 ~~~la~aa~~~g~-~~~~~~~~~~-~----~~~i~~~~--~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~  154 (299)
T cd02809          83 ELATARAAAAAGI-PFTLSTVSTT-S----LEEVAAAA--PGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPV  154 (299)
T ss_pred             HHHHHHHHHHcCC-CEEecCCCcC-C----HHHHHHhc--CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence            5689999999995 6777877632 1    11111112  27999999987 9999999999999999999999999998


Q ss_pred             cccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCC
Q psy2386          84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP  163 (311)
Q Consensus        84 ~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g  163 (311)
                      ...+             ...++++++++.+++||++|...          ..+.++.++++|+|+|++|++.+ .     
T Consensus       155 ~~~~-------------~~~~~i~~l~~~~~~pvivK~v~----------s~~~a~~a~~~G~d~I~v~~~gG-~-----  205 (299)
T cd02809         155 LGRR-------------LTWDDLAWLRSQWKGPLILKGIL----------TPEDALRAVDAGADGIVVSNHGG-R-----  205 (299)
T ss_pred             CCCC-------------CCHHHHHHHHHhcCCCEEEeecC----------CHHHHHHHHHCCCCEEEEcCCCC-C-----
Confidence            6433             23367888888889999999652          14678999999999999977643 1     


Q ss_pred             CcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCC
Q psy2386         164 KQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP  241 (311)
Q Consensus       164 ~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~  241 (311)
                        +.+.++..|+.+.++++.++ ++|||++|||++..|+.+++.. ||+||+||     ||++..+..   +      ..
T Consensus       206 --~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~-----~~l~~~~~~---g------~~  269 (299)
T cd02809         206 --QLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR-----PFLYGLAAG---G------EA  269 (299)
T ss_pred             --CCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcH-----HHHHHHHhc---C------HH
Confidence              12234578999999998774 5999999999999999999987 99999999     555543321   1      12


Q ss_pred             CHHHHHHHHHHHHHHHHh-cC
Q psy2386         242 TRIDIINRMILYIRQQLN-NN  261 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~-~g  261 (311)
                      ...+.++.+.++++.... .|
T Consensus       270 ~v~~~i~~l~~el~~~m~~~G  290 (299)
T cd02809         270 GVAHVLEILRDELERAMALLG  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC
Confidence            345667777777777666 55

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=99.87  E-value=1.4e-21  Score=184.07  Aligned_cols=175  Identities=15%  Similarity=0.186  Sum_probs=143.9

Q ss_pred             CCCCCCeEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386          42 NAEEHPIAFQVGDN-------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~-------~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~  114 (311)
                      ...+.|++++++++       ..++|++.++.+.+. +|+||||.+||+..      |...+++++.+.+++++|++.++
T Consensus       131 ~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~-ad~iElNlScPn~~------~~~~~~~~~~~~~i~~~V~~~~~  203 (335)
T TIGR01036       131 ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL-ADYLVVNVSSPNTP------GLRDLQYKAELRDLLTAVKQEQD  203 (335)
T ss_pred             ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh-CCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHH
Confidence            34468999999887       579999999988874 89999999999863      34556899999999999999886


Q ss_pred             -------ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------ccccCCCCcCCCCCcCcHH
Q psy2386         115 -------IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus       115 -------~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------~~~G~~g~~~~~~~~~~~~  175 (311)
                             +||.||+...++..    ++.++++.++++|+|+|++..++.            ...|+||+   ...+...+
T Consensus       204 ~~~~~~~~Pv~vKLsP~~~~~----~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~---~i~p~al~  276 (335)
T TIGR01036       204 GLRRVHRVPVLVKIAPDLTES----DLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGK---PLQDKSTE  276 (335)
T ss_pred             hhhhccCCceEEEeCCCCCHH----HHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCH---HHHHHHHH
Confidence                   99999999876532    468899999999999999765431            24567776   23344678


Q ss_pred             HHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         176 FVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       176 ~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      +++++++.++ ++|||+.|||.|++|+.+++.. ||.|++|++++. +|.++.++.+.
T Consensus       277 ~v~~~~~~~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~~~i~~~  334 (335)
T TIGR01036       277 IIRRLYAELQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLVKEIVKE  334 (335)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHHHHHHhh
Confidence            8999988764 5999999999999999999986 999999999977 69999988753

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=99.86  E-value=1.6e-20  Score=177.80  Aligned_cols=225  Identities=17%  Similarity=0.193  Sum_probs=167.7

Q ss_pred             CCCHHHHHHH-HHhCCCcEEEecceeccccc----CC----ch-------hcc-ccCCCCCCeEEEec--C-----C---
Q psy2386           3 LTDRHCRMFH-RQITRYSWLYTEMFTTQAIL----GN----KK-------HCL-DFNAEEHPIAFQVG--D-----N---   55 (311)
Q Consensus         3 ~td~~fR~l~-~~~g~~~l~~temv~a~~l~----~~----~~-------~~l-~~~~~~~p~~~Ql~--g-----~---   55 (311)
                      .||.+.+.+. |.-|..+|+.||......--    +.    ..       ++. ..|..+.++++||+  |     +   
T Consensus        37 pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~  116 (363)
T COG1902          37 PTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPW  116 (363)
T ss_pred             CCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHHHHHHHHHHhcCCeEEEEeccCcccccccccC
Confidence            4667777666 45554689999966543221    10    11       111 12667778888887  3     0   


Q ss_pred             ------------------C------------HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCccc
Q psy2386          56 ------------------E------------PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILM   96 (311)
Q Consensus        56 ------------------~------------~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll   96 (311)
                                        .            .++|++||++++++|||+|||+.+         +|..|.++|.||+++.
T Consensus       117 ~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlE  196 (363)
T COG1902         117 LPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLE  196 (363)
T ss_pred             CCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHH
Confidence                              1            167999999999999999999965         8999999999999999


Q ss_pred             CChHHHHHHHHHHhccccc--eeEEEEeccCC-C--CCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCC
Q psy2386          97 TKPLLVSDCIKAMRDSVEI--DITVKHRIGID-D--INSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~--pvsvKiR~g~~-~--~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      ++.+++.||+++||++++.  ||.+++..... .  ..+.++..++++.|++.| +|+|++.+-.....+   ......+
T Consensus       197 NR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~---~~~~~~~  273 (363)
T COG1902         197 NRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGG---TITVSGP  273 (363)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCC---Ccccccc
Confidence            9999999999999999954  78887776322 1  223557899999999999 799998754321111   0000001


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .....+..+++..+ .+|||++|+|++++.+.++++.  ||.|.+||+++.||.+..++++..
T Consensus       274 ~~~~~~a~~i~~~~-~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~g~  335 (363)
T COG1902         274 GYQVEFAARIKKAV-RIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAEGR  335 (363)
T ss_pred             chhHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHcCC
Confidence            12345677788887 7999999999999999999987  999999999999999999988643

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=99.85  E-value=8.8e-21  Score=176.13  Aligned_cols=174  Identities=21%  Similarity=0.318  Sum_probs=138.2

Q ss_pred             CCCeEEEecCCC---HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          45 EHPIAFQVGDNE---PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~---~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      ..|+++++.|.+   .++|.+.|+.++ .|+|+||||++||+..     .+..+..+++...++++.+++.+++||.||+
T Consensus        96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~ScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL  169 (295)
T PF01180_consen   96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLSCPNVP-----GGRPFGQDPELVAEIVRAVREAVDIPVFVKL  169 (295)
T ss_dssp             CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEESTSTTST-----TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred             ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEeeccCCC-----CccccccCHHHHHHHHHHHHhccCCCEEEEe
Confidence            579999999999   999999999888 6799999999999874     3445678899999999999999999999999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc------------c----ccccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN------------A----FLKKLNPKQNRKIPILKYNFVYNLKKDFP  185 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt------------~----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~  185 (311)
                      ....++.    ...+.+..+.+.|+++|+...++            .    ...|+||+   ...|..+.+++++++.++
T Consensus       170 ~p~~~~~----~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~---~i~p~aL~~V~~~~~~~~  242 (295)
T PF01180_consen  170 SPNFTDI----EPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGP---AIRPIALRWVRELRKALG  242 (295)
T ss_dssp             -STSSCH----HHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEG---GGHHHHHHHHHHHHHHTT
T ss_pred             cCCCCch----HHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCcCch---hhhhHHHHHHHHHHhccc
Confidence            9865542    23566777779999999843221            1    13456766   233456789999999984


Q ss_pred             -CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhhh
Q psy2386         186 -ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY  231 (311)
Q Consensus       186 -~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~~  231 (311)
                       ++|||++|||.|++|+.+++.. ||.|++++++ +.+|+++.++.+.+
T Consensus       243 ~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~~L  291 (295)
T PF01180_consen  243 QDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINREL  291 (295)
T ss_dssp             TSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHHHH
T ss_pred             cceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHHHH
Confidence             4999999999999999999976 9999999999 88999999988654

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=99.85  E-value=2.3e-20  Score=176.58  Aligned_cols=172  Identities=17%  Similarity=0.233  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~  126 (311)
                      ++|++||++++++|||+||||++         +|..|.|+|.||+++.++.+++.||+++||+++  +.||.+|+.....
T Consensus       149 ~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~  228 (341)
T PF00724_consen  149 EDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDF  228 (341)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCS
T ss_pred             HHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecc
Confidence            67999999999999999999987         699999999999999999999999999999998  5778887775322


Q ss_pred             CCC--cHHHHHHHHHHHHHcCCCEEEEecCccc--cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 DIN--SYDFVRDFVGTVSSAGCRTFIVHARNAF--LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ~~~--~~~~~~e~~~~l~~~G~~~itvh~Rt~~--~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      ...  +.++..++++.+++.|++.+.+..-...  .................+.+..+++.+ ++||+++|+|.+++.+.
T Consensus       229 ~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-~~pvi~~G~i~~~~~ae  307 (341)
T PF00724_consen  229 VEGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-KIPVIGVGGIRTPEQAE  307 (341)
T ss_dssp             STTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-SSEEEEESSTTHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-CceEEEEeeecchhhhH
Confidence            111  2345678899999999998875432210  000000001111113457788889887 89999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.  ||.|.+||+++.||.+.+++.+.
T Consensus       308 ~~l~~g~~DlV~~gR~~ladPd~~~k~~~g  337 (341)
T PF00724_consen  308 KALEEGKADLVAMGRPLLADPDLPNKAREG  337 (341)
T ss_dssp             HHHHTTSTSEEEESHHHHH-TTHHHHHHHT
T ss_pred             HHHhcCCceEeeccHHHHhCchHHHHHHcC
Confidence            99976  99999999999999999998763

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.84  E-value=2e-20  Score=177.25  Aligned_cols=163  Identities=14%  Similarity=0.228  Sum_probs=135.1

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEec
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLN   78 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN   78 (311)
                      |+||.+||.+|+++|+.++     |++++|. .        +++..|+.+||+|  ++|+. ++|++++++.+++.    
T Consensus        54 gVtd~~fr~~~~~~Galgv-----vsaegl~~~--------~~~~~~~~~QI~g~~~~~~~-a~aa~~~~e~~~~~----  115 (369)
T TIGR01304        54 ALVSPEFAIELGELGGLGV-----LNLEGLWGR--------HEDPDPAIAKIAEAYEEGDQ-AAATRLLQELHAAP----  115 (369)
T ss_pred             cccCHHHHHHHHHcCCccc-----ccchHHHhc--------CCCHHHHHHHHhhcCCChHH-HHHHHHHHHcCCCc----
Confidence            6999999999999996455     8888886 3        2223567799999  67777 99999999987665    


Q ss_pred             cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386          79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL  158 (311)
Q Consensus        79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~  158 (311)
                                        .+|+++.+++++++++.   |+||+|++..      ...++++.++++|++.|++|+||. .
T Consensus       116 ------------------~~p~l~~~ii~~vr~a~---VtvkiRl~~~------~~~e~a~~l~eAGad~I~ihgrt~-~  167 (369)
T TIGR01304       116 ------------------LKPELLGERIAEVRDSG---VITAVRVSPQ------NAREIAPIVVKAGADLLVIQGTLV-S  167 (369)
T ss_pred             ------------------cChHHHHHHHHHHHhcc---eEEEEecCCc------CHHHHHHHHHHCCCCEEEEeccch-h
Confidence                              37999999999999973   9999999532      257999999999999999999996 3


Q ss_pred             ccC-CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         159 KKL-NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       159 ~G~-~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ++| +|       ..+|..+.++++.. ++|||+ |||.|.+++.++++. ||+||+||+...
T Consensus       168 q~~~sg-------~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~gg~~  221 (369)
T TIGR01304       168 AEHVST-------SGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTGAAGVIVGPGGAN  221 (369)
T ss_pred             hhccCC-------CCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCCCc
Confidence            443 22       25799899999988 799998 999999999999986 999999987743

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=99.84  E-value=8.5e-20  Score=173.77  Aligned_cols=160  Identities=16%  Similarity=0.221  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEecc---
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIG---  124 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g---  124 (311)
                      ++|++||++++++|||+||||++         .|..|.|+|.||+.+.++.+++.||+++||++++. .|.+|+...   
T Consensus       159 ~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~  238 (362)
T PRK10605        159 NDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTF  238 (362)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccc
Confidence            67999999999999999999976         69999999999999999999999999999999853 466666531   


Q ss_pred             --CCCCCcHHH-HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         125 --IDDINSYDF-VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       125 --~~~~~~~~~-~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                        .+...+.++ ..++++.|++.|+|+|.|.....  .+   .     .+....+.+++++.+ ++||+++|++ |++.+
T Consensus       239 ~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~--~~---~-----~~~~~~~~~~ik~~~-~~pv~~~G~~-~~~~a  306 (362)
T PRK10605        239 NNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW--AG---G-----EPYSDAFREKVRARF-HGVIIGAGAY-TAEKA  306 (362)
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccc--cC---C-----ccccHHHHHHHHHHC-CCCEEEeCCC-CHHHH
Confidence              111233445 68999999999999999975421  11   1     112345678899988 7999999996 89999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+.++.  ||.|++||+++.||++.+++.+
T Consensus       307 e~~i~~G~~D~V~~gR~~iadPd~~~k~~~  336 (362)
T PRK10605        307 ETLIGKGLIDAVAFGRDYIANPDLVARLQR  336 (362)
T ss_pred             HHHHHcCCCCEEEECHHhhhCccHHHHHhc
Confidence            999986  9999999999999999999875

>PLN02826 dihydroorotate dehydrogenase

Probab=99.83  E-value=1.8e-19  Score=173.06  Aligned_cols=171  Identities=13%  Similarity=0.147  Sum_probs=138.3

Q ss_pred             CCeEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc--------
Q psy2386          46 HPIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS--------  112 (311)
Q Consensus        46 ~p~~~Ql~g~-----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~--------  112 (311)
                      .|++++|+++     .+++|.+.++.+.+. +|+|+||.+||+..      |-.-+++++.+.++++++++.        
T Consensus       187 ~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~-aDylelNiScPNtp------glr~lq~~~~l~~ll~~V~~~~~~~~~~~  259 (409)
T PLN02826        187 GILGVNLGKNKTSEDAAADYVQGVRALSQY-ADYLVINVSSPNTP------GLRKLQGRKQLKDLLKKVLAARDEMQWGE  259 (409)
T ss_pred             ceEEEEeccCCCCcccHHHHHHHHHHHhhh-CCEEEEECCCCCCC------CcccccChHHHHHHHHHHHHHHHHhhhcc
Confidence            3899999888     689999999999875 89999999999963      334567899999999999743        


Q ss_pred             -ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------ccccCCCCcCCCCCcCcHHHHH
Q psy2386         113 -VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus       113 -~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                       ..+||.||+....+++    ++.++++.+.++|+|.|++..++.             ...|+||+.-   .+...++++
T Consensus       260 ~~~~Pv~vKlaPdl~~~----di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl---~~~sl~~v~  332 (409)
T PLN02826        260 EGPPPLLVKIAPDLSKE----DLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPL---FDLSTEVLR  332 (409)
T ss_pred             ccCCceEEecCCCCCHH----HHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccc---cHHHHHHHH
Confidence             4689999998755432    467899999999999999875331             1356777632   234578899


Q ss_pred             HHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         179 NLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       179 ~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      ++.+.++ ++|||+.|||.|.+|+.+++.. |+.|+++++++. .|+++.++.+.
T Consensus       333 ~l~~~~~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~e  387 (409)
T PLN02826        333 EMYRLTRGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEGPALIPRIKAE  387 (409)
T ss_pred             HHHHHhCCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhcCHHHHHHHHHH
Confidence            9988764 5999999999999999999976 999999999866 58888777654

>PLN02411 12-oxophytodienoate reductase

Probab=99.82  E-value=5e-19  Score=170.07  Aligned_cols=168  Identities=15%  Similarity=0.190  Sum_probs=128.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccC--
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI--  125 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~--  125 (311)
                      ++|++||+++.++|||+||||++         +|..|.|+|.||+.+.++.+++.||+++||++++. .|.||+....  
T Consensus       165 ~~f~~AA~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~  244 (391)
T PLN02411        165 EHYRQAALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDH  244 (391)
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccc
Confidence            67999999999999999999976         79999999999999999999999999999999853 4777766421  


Q ss_pred             ---CCCCcHHHHHHHHHHHHHc------CCCEEEEecCccccccCCCCc-CCCCCcCcH-HHHHHHHHhCCCCeEEEecC
Q psy2386         126 ---DDINSYDFVRDFVGTVSSA------GCRTFIVHARNAFLKKLNPKQ-NRKIPILKY-NFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       126 ---~~~~~~~~~~e~~~~l~~~------G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~-~~i~~i~~~~~~ipvi~nGg  194 (311)
                         .+.+..++..++++.+++.      |+|+|.|.....  ..+.... ........+ .+.+++++.+ ++||+++|+
T Consensus       245 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~--~~~~~~~~~~~~~~~~~~~~a~~ik~~v-~~pvi~~G~  321 (391)
T PLN02411        245 LDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRY--TAYGQTESGRHGSEEEEAQLMRTLRRAY-QGTFMCSGG  321 (391)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcc--cccCCCcccccCCccchhHHHHHHHHHc-CCCEEEECC
Confidence               1122233456777777763      599999975431  1111000 001011112 4568899988 799999999


Q ss_pred             CCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         195 IKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       195 I~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      | +++++.++++.  ||.|.+||+++.||.+.+++++
T Consensus       322 i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~  357 (391)
T PLN02411        322 F-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL  357 (391)
T ss_pred             C-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence            9 67999999975  9999999999999999999875

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.75  E-value=8.9e-18  Score=151.67  Aligned_cols=127  Identities=17%  Similarity=0.329  Sum_probs=105.8

Q ss_pred             cccCcccCChHHHHHHHHHHhccc--ccee---EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCC
Q psy2386          90 FFGAILMTKPLLVSDCIKAMRDSV--EIDI---TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK  164 (311)
Q Consensus        90 ~~G~~Ll~~~~~~~~iv~~v~~~~--~~pv---svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~  164 (311)
                      ..|+++++||+++.++++++.+.+  ++++   .+|++ ||++...  .+.++++.+++.|++.|++|+|++ .+.+   
T Consensus       102 viGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~--~~~~~~~~l~~~G~~~iiv~~~~~-~g~~---  174 (241)
T PRK14024        102 NIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGG--DLWEVLERLDSAGCSRYVVTDVTK-DGTL---  174 (241)
T ss_pred             EECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCc--cHHHHHHHHHhcCCCEEEEEeecC-CCCc---
Confidence            568999999999999999997765  4455   66664 8876432  568999999999999999999986 2333   


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh----hcCEEEEehhhhhCCcchHHhHh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN----YIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~----~adgVmigRa~l~~P~i~~~~~~  229 (311)
                          .+ .||+.++++++.. ++|||+||||+|++|+.++.+    .|||||+||+++.++.-+.++.+
T Consensus       175 ----~G-~d~~~i~~i~~~~-~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~  237 (241)
T PRK14024        175 ----TG-PNLELLREVCART-DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALA  237 (241)
T ss_pred             ----cC-CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHH
Confidence                33 3999999999987 899999999999999999863    39999999999999987777654

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=99.75  E-value=8.4e-18  Score=151.99  Aligned_cols=145  Identities=23%  Similarity=0.304  Sum_probs=110.1

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .++|++++++||+.|++|.|||+..+.++  |.++|++|+.+.    +|++.+++||++|+|.|.         ..-++.
T Consensus        27 ~~~a~iae~~g~~~v~~~~~~psd~~~~g--g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ---------~~Ea~~   91 (293)
T PRK04180         27 AEQAKIAEEAGAVAVMALERVPADIRAAG--GVARMADPKMIE----EIMDAVSIPVMAKARIGH---------FVEAQI   91 (293)
T ss_pred             HHHHHHHHHhChHHHHHccCCCchHhhcC--CeeecCCHHHHH----HHHHhCCCCeEEeehhhH---------HHHHHH
Confidence            46889999999999999999999986655  999999999977    666678999999999873         122455


Q ss_pred             HHHcCCCEEE---------------------------------------------Ee--------------cCc-----c
Q psy2386         141 VSSAGCRTFI---------------------------------------------VH--------------ARN-----A  156 (311)
Q Consensus       141 l~~~G~~~it---------------------------------------------vh--------------~Rt-----~  156 (311)
                      |++.|+|.|-                                             -+              -|+     .
T Consensus        92 L~~~GvDiID~Te~lrpad~~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~  171 (293)
T PRK04180         92 LEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIR  171 (293)
T ss_pred             HHHcCCCEEeccCCCCchHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHH
Confidence            5555655553                                             11              010     0


Q ss_pred             ccccCCCCcCCC---CCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         157 FLKKLNPKQNRK---IPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       157 ~~~G~~g~~~~~---~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      .+.||++.....   .-.++|+.++++++.. ++||+  +.|||.|++++..+++. ||+|++|++++..+
T Consensus       172 ~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~  241 (293)
T PRK04180        172 RLTSMSEDELYTAAKELQAPYELVKEVAELG-RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG  241 (293)
T ss_pred             HHhCCCHHHHHhhccccCCCHHHHHHHHHhC-CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence            134554322111   2346899999999987 79998  99999999999999987 99999999997433

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.66  E-value=2.1e-15  Score=137.54  Aligned_cols=177  Identities=10%  Similarity=0.157  Sum_probs=125.1

Q ss_pred             HhCCCcEEEecceecccccCCchhccc-c-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc
Q psy2386          14 QITRYSWLYTEMFTTQAILGNKKHCLD-F-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF   91 (311)
Q Consensus        14 ~~g~~~l~~temv~a~~l~~~~~~~l~-~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~   91 (311)
                      ..|...+.+|..-.+...-+....+++ . .....|  +|++| ....+.++.+++ +.|++.|.||             
T Consensus        41 ~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~p--v~~gG-Gi~s~~d~~~l~-~~G~~~vvig-------------  103 (258)
T PRK01033         41 EKEVDELIVLDIDASKRGSEPNYELIENLASECFMP--LCYGG-GIKTLEQAKKIF-SLGVEKVSIN-------------  103 (258)
T ss_pred             HcCCCEEEEEECCCCcCCCcccHHHHHHHHHhCCCC--EEECC-CCCCHHHHHHHH-HCCCCEEEEC-------------
Confidence            445445777776544322211111111 1 112345  46655 555566555544 6799999998             


Q ss_pred             cCcccCChHHHHHHHHHHhccccceeEEEEecc-----------CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386          92 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-----------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK  160 (311)
Q Consensus        92 G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-----------~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G  160 (311)
                       ++++++|+++.++++.+.+. .+++++++|.|           |.+.... ...++++.+++.|++.+++|++++ .+.
T Consensus       104 -s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g~~~~~~v~~~gw~~~~~~-~~~e~~~~~~~~g~~~ii~~~i~~-~G~  179 (258)
T PRK01033        104 -TAALEDPDLITEAAERFGSQ-SVVVSIDVKKNLGGKFDVYTHNGTKKLKK-DPLELAKEYEALGAGEILLNSIDR-DGT  179 (258)
T ss_pred             -hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecCCCCcEEEEEcCCeecCCC-CHHHHHHHHHHcCCCEEEEEccCC-CCC
Confidence             56789999999999998543 37788888765           2121111 357899999999999999999885 222


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh-h-cCEEEEehhhhhC
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN-Y-IDGVMLGREAYKN  220 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~-~-adgVmigRa~l~~  220 (311)
                      ++|        .||+.++++++.+ ++|||++|||.|.+|+.++++ . ||||++|++++..
T Consensus       180 ~~G--------~d~~~i~~~~~~~-~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~  232 (258)
T PRK01033        180 MKG--------YDLELLKSFRNAL-KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK  232 (258)
T ss_pred             cCC--------CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence            332        3999999999987 799999999999999999994 4 9999999999776

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.64  E-value=1e-14  Score=138.50  Aligned_cols=191  Identities=14%  Similarity=0.139  Sum_probs=128.4

Q ss_pred             HHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386          11 FHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus        11 l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      .|++.| ..+.+..+=  .++.. +   ..+.++....+.|++++|+...     ++.+.++++.+   ++|+++||++|
T Consensus        85 ~a~~~G-~~~~~Gs~~--~~~~~~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~---~adal~l~l~~  158 (352)
T PRK05437         85 AAEELG-IAMGVGSQR--AALKDPELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMI---EADALQIHLNP  158 (352)
T ss_pred             HHHHcC-CCeEecccH--hhccChhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhc---CCCcEEEeCcc
Confidence            667787 345665551  11111 1   1122222334789999777643     56666655544   68999999999


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc--c
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL--K  159 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~--~  159 (311)
                      |+.-+...+.     .+.+.+.++++++++.+++||.||.. |..  .    ..+.++.++++|+|+|+|+|+....  .
T Consensus       159 ~qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g~g--~----s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~  226 (352)
T PRK05437        159 LQELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEV-GFG--I----SKETAKRLADAGVKAIDVAGAGGTSWAA  226 (352)
T ss_pred             chhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeC-CCC--C----cHHHHHHHHHcCCCEEEECCCCCCCccc
Confidence            9876655433     45667789999999999999999987 321  1    2578999999999999999874210  0


Q ss_pred             --cCCCCc-CCCCCcCcH-----HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         160 --KLNPKQ-NRKIPILKY-----NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       160 --G~~g~~-~~~~~~~~~-----~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                        .+.+.. .......+|     +.+.++++..+++|||++|||+|+.|+.+++.. ||+|++||+++.
T Consensus       227 ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~  295 (352)
T PRK05437        227 IENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLK  295 (352)
T ss_pred             hhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence              000000 000011222     467777776347999999999999999999987 999999999976

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.62  E-value=1.1e-14  Score=137.32  Aligned_cols=195  Identities=13%  Similarity=0.130  Sum_probs=127.3

Q ss_pred             HHHHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeEEEecCCCHHH--HHHHHHHHHHcCCCEEEeccCCC
Q psy2386           9 RMFHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIAFQVGDNEPKK--LAKSAKIIQKWGYDEINLNCGCP   82 (311)
Q Consensus         9 R~l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~~Ql~g~~~~~--~~~aa~~~~~~g~d~IdiN~gCP   82 (311)
                      -..|++.|- .+.+... ++ ++.+ .   +.+.++....+.|++++|++.....  ..++.+.++..++|+++||+.||
T Consensus        76 a~~a~~~g~-~~~~Gs~-~~-~~~~~~~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~  152 (333)
T TIGR02151        76 ARAARELGI-PMGVGSQ-RA-ALKDPETADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVL  152 (333)
T ss_pred             HHHHHHcCC-CeEEcCc-hh-hccChhhHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCccc
Confidence            347778883 4554431 11 1211 1   1223333345889999988643321  33333334444689999999999


Q ss_pred             ccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc--c-
Q psy2386          83 SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL--K-  159 (311)
Q Consensus        83 ~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~--~-  159 (311)
                      +..+...+..     +.+...++++++++.+++||.||.. |..  .    ..+.++.++++|+|+|+|+|+....  . 
T Consensus       153 q~~~~p~g~~-----~f~~~le~i~~i~~~~~vPVivK~~-g~g--~----~~~~a~~L~~aGvd~I~Vsg~gGt~~~~i  220 (333)
T TIGR02151       153 QELVQPEGDR-----NFKGWLEKIAEICSQLSVPVIVKEV-GFG--I----SKEVAKLLADAGVSAIDVAGAGGTSWAQV  220 (333)
T ss_pred             ccccCCCCCc-----CHHHHHHHHHHHHHhcCCCEEEEec-CCC--C----CHHHHHHHHHcCCCEEEECCCCCCcccch
Confidence            8876665542     3456778999999999999999965 432  1    3688999999999999999874310  0 


Q ss_pred             -cCCCCcCC-CCCcCcH-----HHHHHHHH-hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         160 -KLNPKQNR-KIPILKY-----NFVYNLKK-DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       160 -G~~g~~~~-~~~~~~~-----~~i~~i~~-~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                       .+...... .....+|     +.+.++++ .. ++|||++|||++++|+.+++.. ||+|++||+++.
T Consensus       221 e~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~  288 (333)
T TIGR02151       221 ENYRAKGSNLASFFNDWGIPTAASLLEVRSDAP-DAPIIASGGLRTGLDVAKAIALGADAVGMARPFLK  288 (333)
T ss_pred             hhhcccccccchhhhcccHhHHHHHHHHHhcCC-CCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence             00000000 0111345     45666666 44 7999999999999999999987 999999999874

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.61  E-value=8.7e-15  Score=139.17  Aligned_cols=160  Identities=15%  Similarity=0.222  Sum_probs=123.3

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      ++|+.+||..+.++|..+++.     +.+|.       ...++..|+..||++.++   .++++.+++.+.+        
T Consensus        57 gVt~~~la~avs~~GglGvl~-----~~gl~-------~~~~~~e~l~~qi~~~~~---~~~~~~~~~~~~~--------  113 (368)
T PRK08649         57 AVVSPETAIELGKLGGLGVLN-----LEGLW-------TRYEDPEPILDEIASLGK---DEATRLMQELYAE--------  113 (368)
T ss_pred             ccCCHHHHHHHHhCCCceEEe-----ecccc-------ccCCCHHHHHHHHHhcCc---HHHHHHHHHhhcC--------
Confidence            689999999999999645655     33331       223445678899998888   5566777775422        


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL  161 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~  161 (311)
                      |              .+|+++.+++++++++ +  |+||+|++.  .    +..++++.++++|+|.|++|+||. .+.|
T Consensus       114 P--------------~~p~l~~~iv~~~~~~-~--V~v~vr~~~--~----~~~e~a~~l~eaGvd~I~vhgrt~-~~~h  169 (368)
T PRK08649        114 P--------------IKPELITERIAEIRDA-G--VIVAVSLSP--Q----RAQELAPTVVEAGVDLFVIQGTVV-SAEH  169 (368)
T ss_pred             C--------------CCHHHHHHHHHHHHhC-e--EEEEEecCC--c----CHHHHHHHHHHCCCCEEEEeccch-hhhc
Confidence            3              5699999999999996 4  666777631  1    247899999999999999999986 3333


Q ss_pred             CCCcCCCCCcC-cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         162 NPKQNRKIPIL-KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       162 ~g~~~~~~~~~-~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      .       ... +|..+.++++.. ++|||+ |+|.|+++++++++. ||+||+|+|-
T Consensus       170 ~-------~~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~G~  218 (368)
T PRK08649        170 V-------SKEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTGAAGVLVGIGP  218 (368)
T ss_pred             c-------CCcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            2       223 788888888887 799999 999999999999987 9999999874

>cd04732 HisA HisA

Probab=99.59  E-value=3.3e-14  Score=127.45  Aligned_cols=151  Identities=16%  Similarity=0.310  Sum_probs=109.4

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE------
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH------  121 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi------  121 (311)
                      +-+|+.|. .....++.+.+ +.|+|.|-              .|+.++.+|+++.++.+.+.+. .+.+++.+      
T Consensus        74 ~pv~~~Gg-I~~~e~~~~~~-~~Gad~vv--------------igs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~~~~  136 (234)
T cd04732          74 IPVQVGGG-IRSLEDIERLL-DLGVSRVI--------------IGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDGKVA  136 (234)
T ss_pred             CCEEEeCC-cCCHHHHHHHH-HcCCCEEE--------------ECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCCEEE
Confidence            34666663 33333333333 57899884              4677889999999999987651 22233332      


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +.+|..... .+..++++.+++.|++.+++|+++.  .|.      +. ..+|+.++++++.+ ++||+++|||+|++|+
T Consensus       137 ~~~~~~~~~-~~~~~~~~~~~~~ga~~iii~~~~~--~g~------~~-g~~~~~i~~i~~~~-~ipvi~~GGi~~~~di  205 (234)
T cd04732         137 TKGWLETSE-VSLEELAKRFEELGVKAIIYTDISR--DGT------LS-GPNFELYKELAAAT-GIPVIASGGVSSLDDI  205 (234)
T ss_pred             ECCCeeecC-CCHHHHHHHHHHcCCCEEEEEeecC--CCc------cC-CCCHHHHHHHHHhc-CCCEEEecCCCCHHHH
Confidence            234532111 1467899999999999999999874  111      12 26899999999988 7999999999999999


Q ss_pred             HHHHhh-cCEEEEehhhhhCCcchHH
Q psy2386         202 DLHLNY-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P~i~~~  226 (311)
                      .++++. |||||+||+++.++.-+.+
T Consensus       206 ~~~~~~Ga~gv~vg~~~~~~~~~~~~  231 (234)
T cd04732         206 KALKELGVAGVIVGKALYEGKITLEE  231 (234)
T ss_pred             HHHHHCCCCEEEEeHHHHcCCCCHHH
Confidence            999987 9999999999999865544

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.58  E-value=6.4e-14  Score=126.56  Aligned_cols=190  Identities=10%  Similarity=0.143  Sum_probs=124.9

Q ss_pred             HHHhCCCcEEEecceecccccCCchhccc-c-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386          12 HRQITRYSWLYTEMFTTQAILGNKKHCLD-F-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG   89 (311)
Q Consensus        12 ~~~~g~~~l~~temv~a~~l~~~~~~~l~-~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~   89 (311)
                      ....|...++++..-.+..--+....+++ . ...+.|+++.=+=.+++++.+.    .+.|++.|.+|           
T Consensus        36 ~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~----l~~G~~~v~ig-----------  100 (243)
T cd04731          36 YNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRL----LRAGADKVSIN-----------  100 (243)
T ss_pred             HHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHH----HHcCCceEEEC-----------
Confidence            34556545667766543111111111111 1 1123565542222345544333    34689999886           


Q ss_pred             cccCcccCChHHHHHHHHHHhc-cccceeEEEEec---------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386          90 FFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRI---------GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK  159 (311)
Q Consensus        90 ~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~---------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~  159 (311)
                         ++++++|+.+.++++.+.+ .+-+++.+|.|.         ||.+.... +..++++.+++.|++.|++|+++.  .
T Consensus       101 ---~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~-~~~~~~~~l~~~G~d~i~v~~i~~--~  174 (243)
T cd04731         101 ---SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGL-DAVEWAKEVEELGAGEILLTSMDR--D  174 (243)
T ss_pred             ---chhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCC-CHHHHHHHHHHCCCCEEEEeccCC--C
Confidence               5667899999999998853 344555555432         23322211 467899999999999999999874  1


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      |.       ....+|++++++++.. ++||+++|||+|++|+.++++.  ||+||+||+++..-.-+.++++.
T Consensus       175 g~-------~~g~~~~~i~~i~~~~-~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~  239 (243)
T cd04731         175 GT-------KKGYDLELIRAVSSAV-NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEY  239 (243)
T ss_pred             CC-------CCCCCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHH
Confidence            21       1125899999999987 8999999999999999999974  99999999998877666665543

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.57  E-value=9.7e-14  Score=125.13  Aligned_cols=154  Identities=18%  Similarity=0.288  Sum_probs=113.2

Q ss_pred             eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-cccceeEEE---E
Q psy2386          48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVK---H  121 (311)
Q Consensus        48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvK---i  121 (311)
                      +-+|+.|  +++++..    .+.++|+|.|-+              |+.++++|+++.++++.+.+ .+-+.+++|   +
T Consensus        77 ~~l~v~GGi~~~~~~~----~~~~~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v  138 (241)
T PRK13585         77 VPVQLGGGIRSAEDAA----SLLDLGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGEV  138 (241)
T ss_pred             CcEEEcCCcCCHHHHH----HHHHcCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEE
Confidence            4455543  3444443    333589999876              67778899999999888743 222223322   1


Q ss_pred             e-ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         122 R-IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R-~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      . .||...... +..++++.+++.|++.|++|+++.  .|.      . ...+|+.++++++.+ ++||+++|||+|++|
T Consensus       139 ~~~g~~~~~~~-~~~~~~~~~~~~G~~~i~~~~~~~--~g~------~-~g~~~~~i~~i~~~~-~iPvia~GGI~~~~d  207 (241)
T PRK13585        139 VIKGWTEKTGY-TPVEAAKRFEELGAGSILFTNVDV--EGL------L-EGVNTEPVKELVDSV-DIPVIASGGVTTLDD  207 (241)
T ss_pred             EECCCcccCCC-CHHHHHHHHHHcCCCEEEEEeecC--CCC------c-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHH
Confidence            1 367643321 357899999999999999999864  221      1 235999999999998 799999999999999


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      +.++++. |++|++|++++.+|..+.++...
T Consensus       208 i~~~~~~Ga~gv~vgsa~~~~~~~~~~~~~~  238 (241)
T PRK13585        208 LRALKEAGAAGVVVGSALYKGKFTLEEAIEA  238 (241)
T ss_pred             HHHHHHcCCCEEEEEHHHhcCCcCHHHHHHH
Confidence            9998766 99999999999999998887654

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.56  E-value=1e-13  Score=124.32  Aligned_cols=180  Identities=12%  Similarity=0.209  Sum_probs=132.2

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCG   80 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~g   80 (311)
                      |+||..|+..+.++|..++..++|++.+.+...-.++....  +.|+.++++.+++ ..+.+-++.+.++|+|+|.+|.+
T Consensus        12 g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~~~~i~~~~--~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~   89 (236)
T cd04730          12 GVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT--DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG   89 (236)
T ss_pred             CCCCHHHHHHHHhCCCccccCCCCCCHHHHHHHHHHHHHhc--CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC
Confidence            78999999999999966888889998776641011111111  4688899999886 45667777888999999999866


Q ss_pred             CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386          81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK  160 (311)
Q Consensus        81 CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G  160 (311)
                      +|                    .++++.+++ .++++.+++..           .+.++.+.+.|+|+|.++++.  ..|
T Consensus        90 ~~--------------------~~~~~~~~~-~~i~~i~~v~~-----------~~~~~~~~~~gad~i~~~~~~--~~G  135 (236)
T cd04730          90 PP--------------------AEVVERLKA-AGIKVIPTVTS-----------VEEARKAEAAGADALVAQGAE--AGG  135 (236)
T ss_pred             CC--------------------HHHHHHHHH-cCCEEEEeCCC-----------HHHHHHHHHcCCCEEEEeCcC--CCC
Confidence            32                    123444444 36777776431           244677788999999999874  233


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ..+..    ....++.++++++.+ ++||+++|||.+++++.+++.. +|||++|++++..+.
T Consensus       136 ~~~~~----~~~~~~~i~~i~~~~-~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e  193 (236)
T cd04730         136 HRGTF----DIGTFALVPEVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE  193 (236)
T ss_pred             CCCcc----ccCHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence            32221    124688999999987 7999999999999999999977 999999999987664

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=99.56  E-value=1.2e-13  Score=124.01  Aligned_cols=175  Identities=8%  Similarity=0.093  Sum_probs=120.5

Q ss_pred             HHhCCCcEEEecceecccccCCchhcccc--CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc
Q psy2386          13 RQITRYSWLYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF   90 (311)
Q Consensus        13 ~~~g~~~l~~temv~a~~l~~~~~~~l~~--~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~   90 (311)
                      .++|...+.+|..-.+....+....+++.  ...+.|+  |+ |..+..+.++.+ +.+.|++.|.+|            
T Consensus        40 ~~~g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv--~~-~ggi~~~~d~~~-~~~~G~~~vilg------------  103 (232)
T TIGR03572        40 NAKGADELIVLDIDASKRGREPLFELISNLAEECFMPL--TV-GGGIRSLEDAKK-LLSLGADKVSIN------------  103 (232)
T ss_pred             HHcCCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCE--EE-ECCCCCHHHHHH-HHHcCCCEEEEC------------
Confidence            45565557777664432221111111111  1124555  44 555666666555 445699999886            


Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEecc------------CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG------------IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL  158 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g------------~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~  158 (311)
                        ++++++|+++.++++...+. .+++++++|.+            |...... +..++++.+++.|++.|++|+++.. 
T Consensus       104 --~~~l~~~~~~~~~~~~~~~~-~i~vsld~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~G~d~i~i~~i~~~-  178 (232)
T TIGR03572       104 --TAALENPDLIEEAARRFGSQ-CVVVSIDVKKELDGSDYKVYSDNGRRATGR-DPVEWAREAEQLGAGEILLNSIDRD-  178 (232)
T ss_pred             --hhHhcCHHHHHHHHHHcCCc-eEEEEEEeccCCCCCcEEEEECCCcccCCC-CHHHHHHHHHHcCCCEEEEeCCCcc-
Confidence              66889999999999887443 26788887764            2211111 3579999999999999999997641 


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhh
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA  217 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~  217 (311)
                      +..        ...+|+.++++++.+ ++||+++|||+|++|+.+++..  ||+|++|+++
T Consensus       179 g~~--------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       179 GTM--------KGYDLELIKTVSDAV-SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             CCc--------CCCCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            111        125899999999998 7999999999999999996643  9999999987

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=99.55  E-value=7.2e-14  Score=125.24  Aligned_cols=143  Identities=17%  Similarity=0.296  Sum_probs=105.5

Q ss_pred             EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe----c
Q psy2386          50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR----I  123 (311)
Q Consensus        50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR----~  123 (311)
                      +|+.|  .+.+++.    .+.+.|++.|=              .|++++.+|+.+.++++.+.+.+.+++.+|.+    .
T Consensus        77 v~~~GGI~~~ed~~----~~~~~Ga~~vi--------------lg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~  138 (233)
T PRK00748         77 VQVGGGIRSLETVE----ALLDAGVSRVI--------------IGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATD  138 (233)
T ss_pred             EEEcCCcCCHHHHH----HHHHcCCCEEE--------------ECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEc
Confidence            44544  3444443    33346888764              46888999999999999986654444444321    3


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      ||...... .+.++++.+++.|++.|++|++++ .+.       +.+ +||+.++++++.+ ++|||++|||.|++|+.+
T Consensus       139 g~~~~~~~-~~~e~~~~~~~~g~~~ii~~~~~~-~g~-------~~G-~d~~~i~~l~~~~-~ipvia~GGi~~~~di~~  207 (233)
T PRK00748        139 GWLETSGV-TAEDLAKRFEDAGVKAIIYTDISR-DGT-------LSG-PNVEATRELAAAV-PIPVIASGGVSSLDDIKA  207 (233)
T ss_pred             cCeecCCC-CHHHHHHHHHhcCCCEEEEeeecC-cCC-------cCC-CCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHH
Confidence            56432221 457899999999999999999875 121       222 5999999999988 699999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCC
Q psy2386         204 HLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P  221 (311)
                      +++.  |||||+||+++..-
T Consensus       208 ~~~~g~~~gv~vg~a~~~~~  227 (233)
T PRK00748        208 LKGLGAVEGVIVGRALYEGK  227 (233)
T ss_pred             HHHcCCccEEEEEHHHHcCC
Confidence            9984  99999999998763

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.54  E-value=2.3e-13  Score=128.15  Aligned_cols=163  Identities=15%  Similarity=0.171  Sum_probs=115.0

Q ss_pred             CCCCCCeEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          42 NAEEHPIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~-----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      ...+.|++++++..     +++.+.++.+   ..++|+++||++||+..+...+.     ++.+...+.++.+++.+++|
T Consensus       109 ~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~---~~~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vP  180 (326)
T cd02811         109 APPNGPLIANLGAVQLNGYGVEEARRAVE---MIEADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVP  180 (326)
T ss_pred             hCCCceEEeecCccccCCCCHHHHHHHHH---hcCCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCC
Confidence            45578998888865     4555555544   44689999999998875554432     45566778899999989999


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--cc--ccCCCCcC---CCCCcCcH-----HHHHHHHHhC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--FL--KKLNPKQN---RKIPILKY-----NFVYNLKKDF  184 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--~~--~G~~g~~~---~~~~~~~~-----~~i~~i~~~~  184 (311)
                      |.||..- .  ..    ..+.++.++++|+|+|.|+|+-.  +.  ..+.+...   ......+|     +.+.++++.+
T Consensus       181 VivK~~g-~--g~----s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~  253 (326)
T cd02811         181 VIVKEVG-F--GI----SRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL  253 (326)
T ss_pred             EEEEecC-C--CC----CHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHc
Confidence            9999753 2  11    25789999999999999987521  10  00111000   00111233     4667777766


Q ss_pred             CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         185 PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       185 ~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +++|||++|||++..|+.+++.. ||+|++||+++.
T Consensus       254 ~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         254 PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLK  289 (326)
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence            57999999999999999999987 999999999864

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.53  E-value=2.6e-13  Score=123.40  Aligned_cols=150  Identities=11%  Similarity=0.179  Sum_probs=114.2

Q ss_pred             EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh-----cccc-------c
Q psy2386          50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-----DSVE-------I  115 (311)
Q Consensus        50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~-----~~~~-------~  115 (311)
                      +|+.|  .+.+++.++.    +.|++.|-|+              +.++++|+.+.++.+.+.     -.++       .
T Consensus        77 v~~~GGi~s~~~~~~~l----~~Ga~~Viig--------------t~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~  138 (253)
T PRK02083         77 LTVGGGIRSVEDARRLL----RAGADKVSIN--------------SAAVANPELISEAADRFGSQCIVVAIDAKRDPEPG  138 (253)
T ss_pred             EEeeCCCCCHHHHHHHH----HcCCCEEEEC--------------hhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence            44444  3555554433    3689998775              667889999999999873     2233       4


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      |++||+|.+++..+.  ...++++.+++.|++.+++|+  |..+.+|           .||+.++++++.. ++|||++|
T Consensus       139 ~~~v~~~~~~~~~~~--~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g-----------~d~~~i~~~~~~~-~ipvia~G  204 (253)
T PRK02083        139 RWEVYTHGGRKPTGL--DAVEWAKEVEELGAGEILLTSMDRDGTKNG-----------YDLELTRAVSDAV-NVPVIASG  204 (253)
T ss_pred             CEEEEEcCCceecCC--CHHHHHHHHHHcCCCEEEEcCCcCCCCCCC-----------cCHHHHHHHHhhC-CCCEEEEC
Confidence            679999976654332  357899999999999999976  4333333           4899999999987 79999999


Q ss_pred             CCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         194 GIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       194 gI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ||.|.+|+.++++.  ||+||+|++++..-.-+.++++.+
T Consensus       205 Gv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~  244 (253)
T PRK02083        205 GAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL  244 (253)
T ss_pred             CCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence            99999999999963  999999999988766666666554

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.52  E-value=3.5e-13  Score=120.70  Aligned_cols=144  Identities=17%  Similarity=0.312  Sum_probs=107.7

Q ss_pred             eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe---
Q psy2386          48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR---  122 (311)
Q Consensus        48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR---  122 (311)
                      +-+|+.|  .+.++..    .+.++|+|.|=              .|+.++++|+.+.++++++... .+.+++++|   
T Consensus        73 ~pi~~ggGI~~~ed~~----~~~~~Ga~~vv--------------lgs~~l~d~~~~~~~~~~~g~~-~i~~sid~~~~~  133 (230)
T TIGR00007        73 VPVQVGGGIRSLEDVE----KLLDLGVDRVI--------------IGTAAVENPDLVKELLKEYGPE-RIVVSLDARGGE  133 (230)
T ss_pred             CCEEEeCCcCCHHHHH----HHHHcCCCEEE--------------EChHHhhCHHHHHHHHHHhCCC-cEEEEEEEECCE
Confidence            3455544  4555543    34457998873              3677788999999999998532 245666665   


Q ss_pred             ---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         123 ---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       123 ---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                         .||.+.... ...++++.+++.|++.+++|.+++. +..+        ..||+.++++++.+ ++||+++|||+|++
T Consensus       134 v~~~g~~~~~~~-~~~~~~~~~~~~g~~~ii~~~~~~~-g~~~--------g~~~~~i~~i~~~~-~ipvia~GGi~~~~  202 (230)
T TIGR00007       134 VAVKGWLEKSEV-SLEELAKRLEELGLEGIIYTDISRD-GTLS--------GPNFELTKELVKAV-NVPVIASGGVSSID  202 (230)
T ss_pred             EEEcCCcccCCC-CHHHHHHHHHhCCCCEEEEEeecCC-CCcC--------CCCHHHHHHHHHhC-CCCEEEeCCCCCHH
Confidence               356543222 3578999999999999999998751 1111        25999999999987 89999999999999


Q ss_pred             HHHHHHhh-cCEEEEehhhhhCC
Q psy2386         200 EIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~~P  221 (311)
                      |+.++++. |||||+||+++.+-
T Consensus       203 di~~~~~~Gadgv~ig~a~~~~~  225 (230)
T TIGR00007       203 DLIALKKLGVYGVIVGKALYEGK  225 (230)
T ss_pred             HHHHHHHCCCCEEEEeHHHHcCC
Confidence            99998876 99999999998874

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.51  E-value=1.5e-12  Score=111.94  Aligned_cols=177  Identities=13%  Similarity=0.099  Sum_probs=124.4

Q ss_pred             HHHHHHHhCCCcEEEecceeccccc-CCch---hccccCCCCCCeEEEecCCCHHHHH-HHHHHHHHcCCCEEEeccCCC
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQAIL-GNKK---HCLDFNAEEHPIAFQVGDNEPKKLA-KSAKIIQKWGYDEINLNCGCP   82 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~~l~-~~~~---~~l~~~~~~~p~~~Ql~g~~~~~~~-~aa~~~~~~g~d~IdiN~gCP   82 (311)
                      +.+.+.+.| .++..++.......- ....   -....+..+.|+++|+..+++.+.. .+|+.+.++|+|+|+||.+||
T Consensus        17 ~~~~~~~~G-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~   95 (200)
T cd04722          17 LAKAAAEAG-ADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVG   95 (200)
T ss_pred             HHHHHHcCC-CCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCC
Confidence            444455556 467777766655442 1110   1111234578999999998877654 346788899999999999998


Q ss_pred             ccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386          83 SNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL  161 (311)
Q Consensus        83 ~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~  161 (311)
                      ..              ++...++++++++.+ +.|+.+|++.......      .   .+.+.|+++|.++++.....+.
T Consensus        96 ~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~------~---~~~~~g~d~i~~~~~~~~~~~~  152 (200)
T cd04722          96 YL--------------AREDLELIRELREAVPDVKVVVKLSPTGELAA------A---AAEEAGVDEVGLGNGGGGGGGR  152 (200)
T ss_pred             cH--------------HHHHHHHHHHHHHhcCCceEEEEECCCCccch------h---hHHHcCCCEEEEcCCcCCCCCc
Confidence            64              788899999999987 8999999987533211      1   1688999999999886421110


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      . .     .+.....++.+++.. ++||+++|||.+++++.++++. ||+|++||
T Consensus       153 ~-~-----~~~~~~~~~~~~~~~-~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         153 D-A-----VPIADLLLILAKRGS-KVPVIAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             c-C-----chhHHHHHHHHHhcC-CCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence            0 0     011124455666655 7999999999999999999987 99999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.46  E-value=2.5e-12  Score=117.05  Aligned_cols=187  Identities=9%  Similarity=0.129  Sum_probs=127.3

Q ss_pred             HhCCCcEEEecceecccccCCchhcccc--CCCCCCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386          14 QITRYSWLYTEMFTTQAILGNKKHCLDF--NAEEHPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG   89 (311)
Q Consensus        14 ~~g~~~l~~temv~a~~l~~~~~~~l~~--~~~~~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~   89 (311)
                      ..|...+.++-...+..--+....+++.  ...+.|  +|+.|  .+++++.++    ...|++.|-+            
T Consensus        41 ~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~p--v~~~GGi~s~~d~~~~----~~~Ga~~viv------------  102 (254)
T TIGR00735        41 EEGADELVFLDITASSEGRTTMIDVVERTAETVFIP--LTVGGGIKSIEDVDKL----LRAGADKVSI------------  102 (254)
T ss_pred             HcCCCEEEEEcCCcccccChhhHHHHHHHHHhcCCC--EEEECCCCCHHHHHHH----HHcCCCEEEE------------
Confidence            4565567777776553211111112211  111333  45554  456655433    3468888866            


Q ss_pred             cccCcccCChHHHHHHHHHHh-ccc--cc-----ee------EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386          90 FFGAILMTKPLLVSDCIKAMR-DSV--EI-----DI------TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus        90 ~~G~~Ll~~~~~~~~iv~~v~-~~~--~~-----pv------svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                        |+.++++|+++.++.+... +.+  ++     ++      -||+|.+++....  +..++++.+++.|++.|++|+++
T Consensus       103 --gt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~--~~~~~~~~l~~~G~~~iivt~i~  178 (254)
T TIGR00735       103 --NTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGL--DAVEWAKEVEKLGAGEILLTSMD  178 (254)
T ss_pred             --ChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCC--CHHHHHHHHHHcCCCEEEEeCcC
Confidence              4677899999999988773 322  22     21      4788865543332  46799999999999999999987


Q ss_pred             cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      .  .|+.       +.++|++++++++.+ ++||+++|||+|++|+.+++..  |||||+|++++..-.-+.++++.+.
T Consensus       179 ~--~g~~-------~g~~~~~~~~i~~~~-~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~  247 (254)
T TIGR00735       179 K--DGTK-------SGYDLELTKAVSEAV-KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA  247 (254)
T ss_pred             c--ccCC-------CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence            4  3322       236999999999997 7999999999999999999974  9999999999877666666665543

>KOG1436|consensus

Probab=99.40  E-value=3.1e-12  Score=116.11  Aligned_cols=177  Identities=14%  Similarity=0.178  Sum_probs=125.6

Q ss_pred             cCCCCCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--
Q psy2386          41 FNAEEHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        41 ~~~~~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--  113 (311)
                      ..+...+++|.|+-+.     ..++++-.+..-+. +|...||.+||+..      |-.-|+.-..+.+.+..+..+.  
T Consensus       174 ~~e~~~~lGVnlgknk~s~d~~~dy~~gV~~~g~~-adylviNvSsPNtp------Glr~lq~k~~L~~ll~~v~~a~~~  246 (398)
T KOG1436|consen  174 YPEAPAKLGVNLGKNKTSEDAILDYVEGVRVFGPF-ADYLVINVSSPNTP------GLRSLQKKSDLRKLLTKVVQARDK  246 (398)
T ss_pred             CCCccccceeeeccccCCcchHHHHHHHhhhcccc-cceEEEeccCCCCc------chhhhhhHHHHHHHHHHHHHHHhc
Confidence            3445566889886443     24455554444444 69999999999974      3333444344444444443322  


Q ss_pred             -----cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------ccccCCCCcCCCCCcCcHH
Q psy2386         114 -----EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------FLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus       114 -----~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------~~~G~~g~~~~~~~~~~~~  175 (311)
                           ..||.+|+.......    ++.+++..+.+.++|.+++.+.|-             ..+|+||+   +.++...+
T Consensus       247 ~~~~~~~pvl~kiapDL~~~----el~dia~v~kk~~idg~IvsnttVsrp~~~~~~~~~~etGGLsG~---plk~~st~  319 (398)
T KOG1436|consen  247 LPLGKKPPVLVKIAPDLSEK----ELKDIALVVKKLNIDGLIVSNTTVSRPKASLVNKLKEETGGLSGP---PLKPISTN  319 (398)
T ss_pred             cccCCCCceEEEeccchhHH----HHHHHHHHHHHhCccceeecCceeecCccccccccccccCCCCCC---ccchhHHH
Confidence                 458999998754433    577888889999999998875441             14578887   44556677


Q ss_pred             HHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhhh
Q psy2386         176 FVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLNY  231 (311)
Q Consensus       176 ~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~~  231 (311)
                      .++++.+.+ ++||||++|||.|.+||.+.+.. |..|++++++ ++.|-++.+|++.+
T Consensus       320 ~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~yeGp~i~~kIk~El  378 (398)
T KOG1436|consen  320 TVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVYEGPAIIEKIKREL  378 (398)
T ss_pred             HHHHHHHhccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhhcCchhHHHHHHHH
Confidence            777777654 46999999999999999999876 9999999998 88899999887643

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.34  E-value=3.8e-11  Score=113.64  Aligned_cols=157  Identities=17%  Similarity=0.171  Sum_probs=115.6

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc------------------cCccc-----
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF------------------GAILM-----   96 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~------------------G~~Ll-----   96 (311)
                      +.|...|+.- .|.+...+..++++.+||..|=+...+|..-.+    +.++                  |....     
T Consensus       124 ~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  203 (351)
T cd04737         124 GGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFSEGTGKGKGISEIYAA  203 (351)
T ss_pred             CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhccccccCcchhhhhhh
Confidence            4589999995 577778888889999999999998877533221    0000                  00000     


Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecCccccccCCCCcCCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~  174 (311)
                      -++.+--+.++++++.+++||.||   |..       ..+.++.+.++|+|+|+|  ||+....          ..+..+
T Consensus       204 ~~~~~~~~~l~~lr~~~~~PvivK---gv~-------~~~dA~~a~~~G~d~I~vsnhGGr~ld----------~~~~~~  263 (351)
T cd04737         204 AKQKLSPADIEFIAKISGLPVIVK---GIQ-------SPEDADVAINAGADGIWVSNHGGRQLD----------GGPASF  263 (351)
T ss_pred             ccCCCCHHHHHHHHHHhCCcEEEe---cCC-------CHHHHHHHHHcCCCEEEEeCCCCccCC----------CCchHH
Confidence            112334477788998889999999   221       146788999999999999  7654311          224678


Q ss_pred             HHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         175 NFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       175 ~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      +.+.++++.+. ++|||++|||++..|+.+++.. ||+|||||+++...
T Consensus       264 ~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~l  312 (351)
T cd04737         264 DSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGL  312 (351)
T ss_pred             HHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence            89999988763 5999999999999999999987 99999999887643

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=99.33  E-value=6.7e-11  Score=105.01  Aligned_cols=154  Identities=18%  Similarity=0.345  Sum_probs=119.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec-
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~-  123 (311)
                      ..++-+|++|--- +.. .++.+.++|++.|-+              |+.-.+||+++.++++...+.  +-|++-.|. 
T Consensus        73 ~~~~~vQvGGGIR-s~~-~v~~ll~~G~~rVii--------------Gt~av~~p~~v~~~~~~~g~r--ivv~lD~r~g  134 (241)
T COG0106          73 ATDVPVQVGGGIR-SLE-DVEALLDAGVARVII--------------GTAAVKNPDLVKELCEEYGDR--IVVALDARDG  134 (241)
T ss_pred             hCCCCEEeeCCcC-CHH-HHHHHHHCCCCEEEE--------------ecceecCHHHHHHHHHHcCCc--EEEEEEccCC
Confidence            3466789987422 122 234455688887766              677789999999999998754  445555553 


Q ss_pred             -----cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386         124 -----GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK  196 (311)
Q Consensus       124 -----g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~  196 (311)
                           ||.+.... .+.++++.+++.|+..+.+|.  |..+++|           .|++.+.++++.+ ++||+++|||.
T Consensus       135 ~vav~GW~e~s~~-~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G-----------~n~~l~~~l~~~~-~ipviaSGGv~  201 (241)
T COG0106         135 KVAVSGWQEDSGV-ELEELAKRLEEVGLAHILYTDISRDGTLSG-----------PNVDLVKELAEAV-DIPVIASGGVS  201 (241)
T ss_pred             ccccccccccccC-CHHHHHHHHHhcCCCeEEEEecccccccCC-----------CCHHHHHHHHHHh-CcCEEEecCcC
Confidence                 67766554 478999999999999999985  4444444           5999999999999 89999999999


Q ss_pred             CHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         197 TKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       197 s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      |.+|++.+.+.  ++||.+|||+|.+-+-+.+..+
T Consensus       202 s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~  236 (241)
T COG0106         202 SLDDIKALKELSGVEGVIVGRALYEGKFTLEEALA  236 (241)
T ss_pred             CHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHH
Confidence            99999999874  9999999999999887766654

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=99.29  E-value=1.4e-10  Score=109.98  Aligned_cols=155  Identities=15%  Similarity=0.132  Sum_probs=112.7

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----c-----------------CcccCcc-----cC
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----N-----------------GFFGAIL-----MT   97 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~-----------------~~~G~~L-----l~   97 (311)
                      +.|.-.||.- .|.+...+..++++++||..|=|..=+|..-.+    +                 .+.+...     ..
T Consensus       132 ~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  211 (367)
T TIGR02708       132 GTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVDVRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSA  211 (367)
T ss_pred             CCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhhhhcCCCCCCccchhhhhcccCCccchhhhcccc
Confidence            4689999987 567777888899999999999887665532111    0                 0011100     01


Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE--EecCccccccCCCCcCCCCCcCcHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI--VHARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it--vh~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                      ++.+--+-++++++.+++||.||   |..       ..+.++.+.++|+++|.  .||+..          .+..++.|+
T Consensus       212 ~~~~~w~~i~~l~~~~~~PvivK---Gv~-------~~eda~~a~~~Gvd~I~VS~HGGrq----------~~~~~a~~~  271 (367)
T TIGR02708       212 KQKLSPRDIEEIAGYSGLPVYVK---GPQ-------CPEDADRALKAGASGIWVTNHGGRQ----------LDGGPAAFD  271 (367)
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEe---CCC-------CHHHHHHHHHcCcCEEEECCcCccC----------CCCCCcHHH
Confidence            12222356788888889999999   322       14678999999999875  576542          223457899


Q ss_pred             HHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         176 FVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       176 ~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .+.++++.+ .++|||++|||++..|+.+++.. ||+|||||+++.
T Consensus       272 ~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~  317 (367)
T TIGR02708       272 SLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY  317 (367)
T ss_pred             HHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            999999877 35999999999999999999987 999999999854

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=99.29  E-value=8.5e-11  Score=109.77  Aligned_cols=136  Identities=11%  Similarity=0.186  Sum_probs=106.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.+.++...|. +.+..+.+.+.|++.|.++.|.|.                    ++++.+++. +++|...+.. 
T Consensus        62 ~~pfgvn~~~~~~~-~~~~~~~~~~~~v~~v~~~~g~p~--------------------~~i~~lk~~-g~~v~~~v~s-  118 (307)
T TIGR03151        62 DKPFGVNIMLLSPF-VDELVDLVIEEKVPVVTTGAGNPG--------------------KYIPRLKEN-GVKVIPVVAS-  118 (307)
T ss_pred             CCCcEEeeecCCCC-HHHHHHHHHhCCCCEEEEcCCCcH--------------------HHHHHHHHc-CCEEEEEcCC-
Confidence            57999998876554 344456666789999998776652                    456667665 7777655421 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                                .+.++.++++|+|.|++||+.  .+|+.|.      ..+|.++.++++.+ ++|||++|||.+++++.++
T Consensus       119 ----------~~~a~~a~~~GaD~Ivv~g~e--agGh~g~------~~~~~ll~~v~~~~-~iPviaaGGI~~~~~~~~a  179 (307)
T TIGR03151       119 ----------VALAKRMEKAGADAVIAEGME--SGGHIGE------LTTMALVPQVVDAV-SIPVIAAGGIADGRGMAAA  179 (307)
T ss_pred             ----------HHHHHHHHHcCCCEEEEECcc--cCCCCCC------CcHHHHHHHHHHHh-CCCEEEECCCCCHHHHHHH
Confidence                      467899999999999999996  4565442      13799999999998 7999999999999999999


Q ss_pred             Hhh-cCEEEEehhhhhCCc
Q psy2386         205 LNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P~  222 (311)
                      +.. |||||+|+.++.-+.
T Consensus       180 l~~GA~gV~iGt~f~~t~E  198 (307)
T TIGR03151       180 FALGAEAVQMGTRFLCAKE  198 (307)
T ss_pred             HHcCCCEeecchHHhcccc
Confidence            987 999999999876553

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=99.25  E-value=4.9e-10  Score=105.48  Aligned_cols=187  Identities=14%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      ++|+..|...+.+.|.-++...+|.. +.+.. ..+..+    +.+.+.+..|.+++....+.. +.++|+|.|+||++.
T Consensus        44 ~vt~~~ma~ava~~GglGvi~~~~~~-~~~~~-~i~~vk----~~l~v~~~~~~~~~~~~~~~~-l~eagv~~I~vd~~~  116 (325)
T cd00381          44 TVTESEMAIAMARLGGIGVIHRNMSI-EEQAE-EVRKVK----GRLLVGAAVGTREDDKERAEA-LVEAGVDVIVIDSAH  116 (325)
T ss_pred             cCCcHHHHHHHHHCCCEEEEeCCCCH-HHHHH-HHHHhc----cCceEEEecCCChhHHHHHHH-HHhcCCCEEEEECCC
Confidence            57899998877777755677666532 22210 001111    345666777877776665554 445799999998643


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK  160 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G  160 (311)
                                |     +++.+.++++.+++... +||.+    |...      ..+.++.+.++|+|+|.++.... ...
T Consensus       117 ----------G-----~~~~~~~~i~~ik~~~p~v~Vi~----G~v~------t~~~A~~l~~aGaD~I~vg~g~G-~~~  170 (325)
T cd00381         117 ----------G-----HSVYVIEMIKFIKKKYPNVDVIA----GNVV------TAEAARDLIDAGADGVKVGIGPG-SIC  170 (325)
T ss_pred             ----------C-----CcHHHHHHHHHHHHHCCCceEEE----CCCC------CHHHHHHHHhcCCCEEEECCCCC-cCc
Confidence                      1     22566788888888652 44443    3221      25778999999999999964321 000


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      . +......+...|..+.++.+...  ++|||++|||.++.|+.++++. ||+||+||.+..-..
T Consensus       171 ~-t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E  234 (325)
T cd00381         171 T-TRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE  234 (325)
T ss_pred             c-cceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence            0 00111223357777777766542  5999999999999999999987 999999999977553

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=99.22  E-value=5.6e-10  Score=101.05  Aligned_cols=153  Identities=13%  Similarity=0.184  Sum_probs=115.4

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC----hHHHHHHHHHH-hccccceeEEE
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVK  120 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~----~~~~~~iv~~v-~~~~~~pvsvK  120 (311)
                      .++-+|++|-=-  . +.++.+-+.|++-|-||              +...+|    |+++.++++.. .+.+-+.+.+|
T Consensus        82 ~~~~vqvGGGIR--~-e~i~~~l~~Ga~rViig--------------T~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k  144 (262)
T PLN02446         82 YPGGLQVGGGVN--S-ENAMSYLDAGASHVIVT--------------SYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCR  144 (262)
T ss_pred             CCCCEEEeCCcc--H-HHHHHHHHcCCCEEEEc--------------hHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEE
Confidence            347799998764  3 56667778899999886              556677    99999999998 44433333343


Q ss_pred             E--------eccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         121 H--------RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       121 i--------R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      .        --||...... .+.+++..+.+.|+..|.++.  |..+++|           .|.+.++++++.+ ++|||
T Consensus       145 ~~~g~~~Va~~GW~~~t~~-~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-----------~d~el~~~l~~~~-~ipVI  211 (262)
T PLN02446        145 KKDGRYYVVTDRWQKFSDL-AVDEETLEFLAAYCDEFLVHGVDVEGKRLG-----------IDEELVALLGEHS-PIPVT  211 (262)
T ss_pred             ecCCCEEEEECCCcccCCC-CHHHHHHHHHHhCCCEEEEEEEcCCCcccC-----------CCHHHHHHHHhhC-CCCEE
Confidence            1        1256554333 467889999999999999884  4444444           5899999999997 89999


Q ss_pred             EecCCCCHHHHHHHHhh---cCEEEEehhh--hhCCcchHHhH
Q psy2386         191 INGGIKTKKEIDLHLNY---IDGVMLGREA--YKNPFLMSNFD  228 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~---adgVmigRa~--l~~P~i~~~~~  228 (311)
                      ++|||.|.+|+.++...   +.+|.+|+++  |.+-.-+.++.
T Consensus       212 ASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~  254 (262)
T PLN02446        212 YAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVV  254 (262)
T ss_pred             EECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHH
Confidence            99999999999998863   6899999999  77766555543

>KOG1799|consensus

Probab=99.20  E-value=1.3e-11  Score=113.38  Aligned_cols=164  Identities=16%  Similarity=0.191  Sum_probs=129.1

Q ss_pred             eEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          48 IAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      +|.+++. ++...|.+.+...+++|.|..|+|+.||...- .+|+|.++-++|..+.||...++..+.+|+.-|+.....
T Consensus       207 mIas~Mciynk~~w~el~d~~eqag~d~lE~nlscphgm~-ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNit  285 (471)
T KOG1799|consen  207 MIASEMCIYNKKCWMELNDSGEQAGQDDLETNLSCPHGMC-ERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNIT  285 (471)
T ss_pred             eehHHHHHhhhhhHHHHhhhHHhhcccchhccCCCCCCCc-cccccceeccChhhhHHHhhhhhhccccccccccCCCcc
Confidence            4444433 56778889999999999999999999999864 447999999999999999999999999999999998766


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEE---------------------EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFI---------------------VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP  185 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~it---------------------vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~  185 (311)
                      +.      .+.++.....|+..|+                     +.+|+. ++|||++   .++|..+..+..|++...
T Consensus       286 d~------revar~~~~~g~~GiaA~NTi~SvM~i~~~~~~P~~~~~~~sT-~GG~S~~---AvRPIAl~~V~~IA~~m~  355 (471)
T KOG1799|consen  286 DK------REVARSVNPVGCEGIAAINTIMSVMGIDMKTLRPEPCVEGYST-PGGYSYK---AVRPIALAKVMNIAKMMK  355 (471)
T ss_pred             cc------cccchhcCcccccchhhHhHHHHHhcccccccCCCcccccccC-CCCcccc---ccchHHHHHHHHHHHHhh
Confidence            53      4566777777777665                     234443 7788877   455667777777777665


Q ss_pred             CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         186 ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       186 ~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ..|+.+.|||.|.+|+.+++-. +.-|++.+|.+-.-+
T Consensus       356 ~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~  393 (471)
T KOG1799|consen  356 EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGY  393 (471)
T ss_pred             cCccccccCcccccchhhHhhcCCcHhhhhhHHHhcCc
Confidence            6899999999999999998865 777888887765544

>KOG0134|consensus

Probab=99.20  E-value=1.6e-10  Score=109.08  Aligned_cols=171  Identities=15%  Similarity=0.162  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEecc-
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG-  124 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g-  124 (311)
                      .+-++.||+.+.++|||+||||-.         .|..|-+.+.||+++.++-+++.|++++|++.++  .+..+-.+.+ 
T Consensus       173 ~Drfv~Aak~~~e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~~~~~  252 (400)
T KOG0134|consen  173 VDRFVYAAKAAYECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGSPTNE  252 (400)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEecCchh
Confidence            366888888888999999999943         7999999999999999999999999999999873  2222222211 


Q ss_pred             -CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCC-CCcCCCCCcC----cHHHHHHHHHhCCCCe-EEEecCCCC
Q psy2386         125 -IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN-PKQNRKIPIL----KYNFVYNLKKDFPELE-IIINGGIKT  197 (311)
Q Consensus       125 -~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~-g~~~~~~~~~----~~~~i~~i~~~~~~ip-vi~nGgI~s  197 (311)
                       .+...+.++...++..+++.|+|.+-+.|++..  -++ ..+.+..-+.    ..++...++..+ +.| |.++|+.++
T Consensus       253 fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~--~~~h~i~~R~~~~~~~~~~~~f~e~~r~~~-kgt~v~a~g~~~t  329 (400)
T KOG0134|consen  253 FQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFL--AYVHFIEPRQSTIAREAFFVEFAETIRPVF-KGTVVYAGGGGRT  329 (400)
T ss_pred             hhhccccccchHHHHHHHHhcccchhhccCchhh--hhhhhccccccccccccchhhhhhHHHHHh-cCcEEEecCCccC
Confidence             011112234567889999999996655544320  011 0111221111    234556667666 455 557789999


Q ss_pred             HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+.+.+.++.  .|+|..||.++.||.+..++...
T Consensus       330 ~~~~~eav~~~~T~~ig~GR~f~anPDLp~rl~~~  364 (400)
T KOG0134|consen  330 REAMVEAVKSGRTDLIGYGRPFLANPDLPKRLLNG  364 (400)
T ss_pred             HHHHHHHHhcCCceeEEecchhccCCchhHHHHhC
Confidence            9999999986  99999999999999999998753

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=99.19  E-value=1.4e-09  Score=102.87  Aligned_cols=161  Identities=18%  Similarity=0.249  Sum_probs=114.3

Q ss_pred             CCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-------------------cCcc---c
Q psy2386          44 EEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-------------------GAIL---M   96 (311)
Q Consensus        44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~-------------------G~~L---l   96 (311)
                      .+.|+.+||. ..|.+...+..++++.+||+.|-|+.-.|..-.+    +.++                   +...   .
T Consensus       116 ~~~~~w~Qly~~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  195 (344)
T cd02922         116 PDQPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGF  195 (344)
T ss_pred             CCCcEEEEEeecCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhc
Confidence            3568999996 6688889999999999999999999888843211    1110                   0010   1


Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF  176 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~  176 (311)
                      .++....+.++.+++.++.||.||   +...       .+-++.+.++|+|+|.|.+.-...-      ....  .-++.
T Consensus       196 ~~~~~~~~~i~~l~~~~~~PvivK---gv~~-------~~dA~~a~~~G~d~I~vsnhgG~~~------d~~~--~~~~~  257 (344)
T cd02922         196 IDPTLTWDDIKWLRKHTKLPIVLK---GVQT-------VEDAVLAAEYGVDGIVLSNHGGRQL------DTAP--APIEV  257 (344)
T ss_pred             cCCCCCHHHHHHHHHhcCCcEEEE---cCCC-------HHHHHHHHHcCCCEEEEECCCcccC------CCCC--CHHHH
Confidence            234566678899999999999999   3322       4667889999999999965322110      0111  12344


Q ss_pred             HHHHHH---hC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         177 VYNLKK---DF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       177 i~~i~~---~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.++++   .+ .++|||+.|||++..|+.+++.. ||+|+|||+++..+.
T Consensus       258 L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~  308 (344)
T cd02922         258 LLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALS  308 (344)
T ss_pred             HHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHh
Confidence            555544   22 25999999999999999999987 999999999987653

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.16  E-value=1.6e-10  Score=104.40  Aligned_cols=89  Identities=15%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.|++|.++.  .|.       .++.+++.++++++.+ ++||+++|||+|.+|+.+++.. ||+|
T Consensus        28 d~~~~a~~~~~~G~~~i~i~d~~~--~~~-------~~~~~~~~i~~i~~~~-~~pv~~~GGI~s~~d~~~~l~~G~~~v   97 (243)
T cd04731          28 DPVELAKRYNEQGADELVFLDITA--SSE-------GRETMLDVVERVAEEV-FIPLTVGGGIRSLEDARRLLRAGADKV   97 (243)
T ss_pred             CHHHHHHHHHHCCCCEEEEEcCCc--ccc-------cCcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCceE
Confidence            468999999999999999999975  221       2346999999999998 7999999999999999999976 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++||+++.||+++.++.+.+
T Consensus        98 ~ig~~~~~~p~~~~~i~~~~  117 (243)
T cd04731          98 SINSAAVENPELIREIAKRF  117 (243)
T ss_pred             EECchhhhChHHHHHHHHHc
Confidence            99999999999999998764

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.16  E-value=1.6e-10  Score=105.09  Aligned_cols=88  Identities=16%  Similarity=0.206  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+++.|++.+++|.+++...+         .+.+|+.++++++.+ ++||+++|||+|.+|+++++.. ||+|+
T Consensus        32 ~~~~a~~~~~~G~~~i~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~ipv~~~GGi~s~~~~~~~l~~Ga~~Vi  101 (253)
T PRK02083         32 PVELAKRYNEEGADELVFLDITASSEG---------RDTMLDVVERVAEQV-FIPLTVGGGIRSVEDARRLLRAGADKVS  101 (253)
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCccccc---------CcchHHHHHHHHHhC-CCCEEeeCCCCCHHHHHHHHHcCCCEEE
Confidence            579999999999999999999862111         136999999999998 8999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|++++.||+++.++.+.+
T Consensus       102 igt~~l~~p~~~~ei~~~~  120 (253)
T PRK02083        102 INSAAVANPELISEAADRF  120 (253)
T ss_pred             EChhHhhCcHHHHHHHHHc
Confidence            9999999999999998764

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=99.14  E-value=1.9e-09  Score=97.49  Aligned_cols=149  Identities=13%  Similarity=0.142  Sum_probs=110.7

Q ss_pred             CCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe-
Q psy2386          46 HPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR-  122 (311)
Q Consensus        46 ~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-  122 (311)
                      .++-+|++|-  +.++.    +.+.+.|++-|-+              |+...++|+++.++.+...+.+  -|++-.+ 
T Consensus        73 ~~~~v~vgGGIrs~e~~----~~~l~~Ga~~vvi--------------gT~a~~~p~~~~~~~~~~g~~i--vvslD~k~  132 (243)
T TIGR01919        73 LVVVEELSGGRRDDSSL----RAALTGGRARVNG--------------GTAALENPWWAAAVIRYGGDIV--AVGLDVLE  132 (243)
T ss_pred             CCCCEEEcCCCCCHHHH----HHHHHcCCCEEEE--------------CchhhCCHHHHHHHHHHccccE--EEEEEEec
Confidence            3466788763  45543    3344578888765              4677899999999988875443  3444333 


Q ss_pred             ---------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         123 ---------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       123 ---------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                               .||.... . .+.++++.+++.|+..+.++.  |..+.+|           .|++.++++++.. ++|||+
T Consensus       133 ~g~~~~v~~~Gw~~~~-~-~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G-----------~d~~l~~~l~~~~-~~pvia  198 (243)
T TIGR01919       133 DGEWHTLGNRGWSDGG-G-DLEVLERLLDSGGCSRVVVTDSKKDGLSGG-----------PNELLLEVVAART-DAIVAA  198 (243)
T ss_pred             CCceEEEECCCeecCC-C-cHHHHHHHHHhCCCCEEEEEecCCcccCCC-----------cCHHHHHHHHhhC-CCCEEE
Confidence                     2565522 2 578999999999999999985  4443444           5999999999986 899999


Q ss_pred             ecCCCCHHHHHHHH--h--hcCEEEEehhhhhCCcchHHhH
Q psy2386         192 NGGIKTKKEIDLHL--N--YIDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       192 nGgI~s~~da~~~l--~--~adgVmigRa~l~~P~i~~~~~  228 (311)
                      +|||.|.+|+.++-  .  .++||++|++++.+-.-+.++.
T Consensus       199 sGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~~  239 (243)
T TIGR01919       199 SGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAAL  239 (243)
T ss_pred             ECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHHH
Confidence            99999999999873  2  3999999999999887776654

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.12  E-value=1.8e-09  Score=97.80  Aligned_cols=154  Identities=12%  Similarity=0.175  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHH-----HHHHHHhccccceeE--EEEeccCCC
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS-----DCIKAMRDSVEIDIT--VKHRIGIDD  127 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~-----~iv~~v~~~~~~pvs--vKiR~g~~~  127 (311)
                      .+++.+.++++.+++. +|.||||+-||.+.    .-|..+.+.++.+.     ++++++++.+++|+.  +|+..... 
T Consensus        15 p~~~~~~~~~~~l~~~-ad~iElgip~sdp~----adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~-   88 (244)
T PRK13125         15 PNVESFKEFIIGLVEL-VDILELGIPPKYPK----YDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVD-   88 (244)
T ss_pred             CCHHHHHHHHHHHHhh-CCEEEECCCCCCCC----CCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhh-
Confidence            4789999999999887 99999999999885    23566667777777     899999988899973  55554211 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecC-----------------------------cc---------ccc-----cCCCC
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHAR-----------------------------NA---------FLK-----KLNPK  164 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~R-----------------------------t~---------~~~-----G~~g~  164 (311)
                           ...++++.+.++|++.+++|.-                             |.         ...     +..|.
T Consensus        89 -----~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~  163 (244)
T PRK13125         89 -----SLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPA  163 (244)
T ss_pred             -----CHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCC
Confidence                 2356788888888888888731                             10         000     10110


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ......+.-.+.++++++..++.||+.-|||++++++.++++. ||+|.+|++++.
T Consensus       164 ~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        164 TGVPLPVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             CCCCchHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            0000111113578888887655899999999999999998876 999999999864

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.11  E-value=2.2e-09  Score=96.91  Aligned_cols=146  Identities=13%  Similarity=0.241  Sum_probs=107.2

Q ss_pred             EEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec----
Q psy2386          50 FQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI----  123 (311)
Q Consensus        50 ~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~----  123 (311)
                      +|++|.  +.++.    +.+.+.|++-|=|              |+..++||+++.++ ...-+.  +-+++-+|-    
T Consensus        76 v~vGGGIrs~e~~----~~~l~~Ga~rvvi--------------gT~a~~~p~~l~~~-~~~~~~--ivvslD~k~g~v~  134 (241)
T PRK14114         76 IQIGGGIRSLDYA----EKLRKLGYRRQIV--------------SSKVLEDPSFLKFL-KEIDVE--PVFSLDTRGGKVA  134 (241)
T ss_pred             EEEecCCCCHHHH----HHHHHCCCCEEEE--------------CchhhCCHHHHHHH-HHhCCC--EEEEEEccCCEEe
Confidence            577663  33433    3344567777655              46778999999999 444332  445555442    


Q ss_pred             --cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         124 --GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       124 --g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                        ||...... .+.++++.+++.|+..+.+..  |..+.+|           .|++.++++++.. ++|||++|||.|.+
T Consensus       135 ~~gw~~~~~~-~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-----------~d~el~~~l~~~~-~~pviasGGv~s~~  201 (241)
T PRK14114        135 FKGWLAEEEI-DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTRKIAIEA-EVKVFAAGGISSEN  201 (241)
T ss_pred             eCCCeecCCC-CHHHHHHHHHhcCCCEEEEEeechhhcCCC-----------cCHHHHHHHHHHC-CCCEEEECCCCCHH
Confidence              55443332 468999999999999999874  4444444           4999999999986 89999999999999


Q ss_pred             HHHHHHh------h-cCEEEEehhhhhCCcchHHhHh
Q psy2386         200 EIDLHLN------Y-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       200 da~~~l~------~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      |+.++.+      . ++||.+|++++.+-.-+.++++
T Consensus       202 Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~  238 (241)
T PRK14114        202 SLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKR  238 (241)
T ss_pred             HHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHH
Confidence            9999876      4 9999999999988877766654

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.11  E-value=1.4e-09  Score=96.70  Aligned_cols=127  Identities=14%  Similarity=0.190  Sum_probs=93.8

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCChH--HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL--LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~--~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      ++.+.++|+|.|-++..+              ..+|+  .+.++++.+++..++|+.+.+..           .+.+..+
T Consensus        85 ~~~a~~aGad~I~~~~~~--------------~~~p~~~~~~~~i~~~~~~g~~~iiv~v~t-----------~~ea~~a  139 (219)
T cd04729          85 VDALAAAGADIIALDATD--------------RPRPDGETLAELIKRIHEEYNCLLMADIST-----------LEEALNA  139 (219)
T ss_pred             HHHHHHcCCCEEEEeCCC--------------CCCCCCcCHHHHHHHHHHHhCCeEEEECCC-----------HHHHHHH
Confidence            366778899999887432              12232  67788888877656888775431           2446778


Q ss_pred             HHcCCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         142 SSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       142 ~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      .+.|++++.+  ||++...        ......+++.++++++.+ ++||+++|||.|++++.++++. ||+|++|++++
T Consensus       140 ~~~G~d~i~~~~~g~t~~~--------~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~  210 (219)
T cd04729         140 AKLGFDIIGTTLSGYTEET--------AKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVVGSAIT  210 (219)
T ss_pred             HHcCCCEEEccCccccccc--------cCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHh
Confidence            8999999965  4554311        011235789999999988 8999999999999999999987 99999999987


Q ss_pred             hCCcch
Q psy2386         219 KNPFLM  224 (311)
Q Consensus       219 ~~P~i~  224 (311)
                      ...++.
T Consensus       211 ~~~~~~  216 (219)
T cd04729         211 RPEHIT  216 (219)
T ss_pred             ChHhHh
Confidence            665543

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=99.10  E-value=3.3e-09  Score=96.17  Aligned_cols=185  Identities=17%  Similarity=0.209  Sum_probs=125.4

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceec-----cccc--CCchhcccc-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCC
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTT-----QAIL--GNKKHCLDF-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGY   72 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a-----~~l~--~~~~~~l~~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~   72 (311)
                      |++++..=-.++.+-|+++...-|-+.+     .++.  +....+-.. ..-+.|++-=+-    ..+..-|+.+.++|+
T Consensus        13 ~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K----~~~~~Ea~~L~eaGv   88 (283)
T cd04727          13 MDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVR----IGHFVEAQILEALGV   88 (283)
T ss_pred             EEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeee----hhHHHHHHHHHHcCC
Confidence            6788888889999999887777554443     3443  222111111 123667664332    233444567788999


Q ss_pred             CEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386          73 DEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus        73 d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh  152 (311)
                      |.||    |-.            -.+|  +.+++..+|+..+.|+..-++.           .+=+.+..+.|+|+|--+
T Consensus        89 DiID----aT~------------r~rP--~~~~~~~iK~~~~~l~MAD~st-----------leEal~a~~~Gad~I~TT  139 (283)
T cd04727          89 DMID----ESE------------VLTP--ADEEHHIDKHKFKVPFVCGARN-----------LGEALRRISEGAAMIRTK  139 (283)
T ss_pred             CEEe----ccC------------CCCc--HHHHHHHHHHHcCCcEEccCCC-----------HHHHHHHHHCCCCEEEec
Confidence            9997    211            1233  5778888888779999887664           345677889999999433


Q ss_pred             --cCccc-----------------cccCCCCcC---CCCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-
Q psy2386         153 --ARNAF-----------------LKKLNPKQN---RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       153 --~Rt~~-----------------~~G~~g~~~---~~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-  207 (311)
                        |-|..                 ..||+....   .....++|+.++++++.. ++||+  +.|||.|++++.++++. 
T Consensus       140 l~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~G  218 (283)
T cd04727         140 GEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLG  218 (283)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcC
Confidence              33321                 134432211   112346999999999988 79997  99999999999999987 


Q ss_pred             cCEEEEehhhhh
Q psy2386         208 IDGVMLGREAYK  219 (311)
Q Consensus       208 adgVmigRa~l~  219 (311)
                      ||+|++|++++.
T Consensus       219 AdgVaVGSAI~~  230 (283)
T cd04727         219 ADGVFVGSGIFK  230 (283)
T ss_pred             CCEEEEcHHhhc
Confidence            999999999985

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.09  E-value=3.4e-09  Score=99.25  Aligned_cols=139  Identities=14%  Similarity=0.141  Sum_probs=101.2

Q ss_pred             EEEec-CCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEE-Eecc
Q psy2386          49 AFQVG-DNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVK-HRIG  124 (311)
Q Consensus        49 ~~Ql~-g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvK-iR~g  124 (311)
                      ++.+. |.+++.+.++.++++. .|+|.|-|.+.-|.               .+.+.++++.+++..+ +||.+| +-  
T Consensus        87 ~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh---------------~~~~~e~I~~ir~~~p~~~vi~g~V~--  149 (326)
T PRK05458         87 IASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGH---------------SDSVINMIQHIKKHLPETFVIAGNVG--  149 (326)
T ss_pred             EEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCc---------------hHHHHHHHHHHHhhCCCCeEEEEecC--
Confidence            44444 5567888887776653 24599999754432               3667888999999874 888886 33  


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHH--HHHHHHhCCCCeEEEecCCCCHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNF--VYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~--i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                               ..+-++.+.++|+|++.++   ||....+-     .......+|.+  ++++++.+ ++|||++|||+++.
T Consensus       150 ---------t~e~a~~l~~aGad~i~vg~~~G~~~~t~~-----~~g~~~~~w~l~ai~~~~~~~-~ipVIAdGGI~~~~  214 (326)
T PRK05458        150 ---------TPEAVRELENAGADATKVGIGPGKVCITKI-----KTGFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHG  214 (326)
T ss_pred             ---------CHHHHHHHHHcCcCEEEECCCCCccccccc-----ccCCCCCccHHHHHHHHHHHc-CCCEEEeCCCCCHH
Confidence                     1466889999999999887   33311110     01112357775  88999887 79999999999999


Q ss_pred             HHHHHHhh-cCEEEEehhhhh
Q psy2386         200 EIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~  219 (311)
                      |+.+++.. ||+||+|+++.+
T Consensus       215 Di~KaLa~GA~aV~vG~~~~~  235 (326)
T PRK05458        215 DIAKSIRFGATMVMIGSLFAG  235 (326)
T ss_pred             HHHHHHHhCCCEEEechhhcC
Confidence            99999987 999999999874

>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides

Probab=99.06  E-value=6.1e-09  Score=97.68  Aligned_cols=150  Identities=13%  Similarity=0.135  Sum_probs=119.2

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK  120 (311)
                      .....|+..|+++.+|+.+.+.++.+.+.||+.|.||+|.                +++...++++++++.+ ++++.++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~~lr~~~g~~~l~vD  183 (316)
T cd03319         120 APRPLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKLGG----------------DLEDDIERIRAIREAAPDARLRVD  183 (316)
T ss_pred             CCCCceeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------ChhhHHHHHHHHHHhCCCCeEEEe
Confidence            4456788899999999999999998888999999999763                2355567888888876 4789999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      .+.+|+..    +..++++.+++.|+.+|-               +. .++.||+.++++++.. ++||++++.+.++++
T Consensus       184 ~n~~~~~~----~A~~~~~~l~~~~l~~iE---------------eP-~~~~d~~~~~~L~~~~-~ipIa~~E~~~~~~~  242 (316)
T cd03319         184 ANQGWTPE----EAVELLRELAELGVELIE---------------QP-VPAGDDDGLAYLRDKS-PLPIMADESCFSAAD  242 (316)
T ss_pred             CCCCcCHH----HHHHHHHHHHhcCCCEEE---------------CC-CCCCCHHHHHHHHhcC-CCCEEEeCCCCCHHH
Confidence            99888863    468999999999998882               11 1235899999999987 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         201 IDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      +.++++.  +|.|++--.-.+...=+.++.
T Consensus       243 ~~~~~~~~~~d~v~~~~~~~GGi~~~~~~~  272 (316)
T cd03319         243 AARLAGGGAYDGINIKLMKTGGLTEALRIA  272 (316)
T ss_pred             HHHHHhcCCCCEEEEeccccCCHHHHHHHH
Confidence            9999985  999998755555444344443

The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=99.06  E-value=2.2e-09  Score=96.30  Aligned_cols=144  Identities=17%  Similarity=0.340  Sum_probs=100.7

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc--
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG--  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g--  124 (311)
                      ++-+|++|.= ..+.++ +.+.+.|++-|=|              |+..++||+++.++.+..-+. .+-+++-+|.|  
T Consensus        73 ~~~i~vgGGI-rs~ed~-~~ll~~Ga~~Vvi--------------gt~~~~~~~~l~~~~~~~g~~-~ivvslD~~~g~~  135 (229)
T PF00977_consen   73 GIPIQVGGGI-RSIEDA-ERLLDAGADRVVI--------------GTEALEDPELLEELAERYGSQ-RIVVSLDARDGYK  135 (229)
T ss_dssp             SSEEEEESSE--SHHHH-HHHHHTT-SEEEE--------------SHHHHHCCHHHHHHHHHHGGG-GEEEEEEEEETEE
T ss_pred             CccEEEeCcc-CcHHHH-HHHHHhCCCEEEe--------------ChHHhhchhHHHHHHHHcCcc-cEEEEEEeeeceE
Confidence            3667777641 122222 3344567776655              467889999999999988663 24445544444  


Q ss_pred             -----CCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         125 -----IDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       125 -----~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                           |...... .+.++++.+++.|+..+.++.-  ..+.+|           .|++.++++++.+ ++|||++|||.|
T Consensus       136 v~~~gw~~~~~~-~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~d~~~~~~l~~~~-~~~viasGGv~~  202 (229)
T PF00977_consen  136 VATNGWQESSGI-DLEEFAKRLEELGAGEIILTDIDRDGTMQG-----------PDLELLKQLAEAV-NIPVIASGGVRS  202 (229)
T ss_dssp             EEETTTTEEEEE-EHHHHHHHHHHTT-SEEEEEETTTTTTSSS-------------HHHHHHHHHHH-SSEEEEESS--S
T ss_pred             EEecCccccCCc-CHHHHHHHHHhcCCcEEEEeeccccCCcCC-----------CCHHHHHHHHHHc-CCCEEEecCCCC
Confidence                 5543222 4689999999999999998854  333344           5899999999988 899999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      .+|+.++... +|+|++|++++.+
T Consensus       203 ~~Dl~~l~~~G~~gvivg~al~~g  226 (229)
T PF00977_consen  203 LEDLRELKKAGIDGVIVGSALHEG  226 (229)
T ss_dssp             HHHHHHHHHTTECEEEESHHHHTT
T ss_pred             HHHHHHHHHCCCcEEEEehHhhCC
Confidence            9999999976 9999999999765

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=99.05  E-value=1.1e-08  Score=92.86  Aligned_cols=141  Identities=20%  Similarity=0.219  Sum_probs=101.5

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      -|++++++|+-.|------|... ++ ..|-+-+++|+.+.+|    ++.+++||.-|+|.|.         ..=++.|+
T Consensus        22 qa~iae~aga~avm~le~~p~d~-r~-~ggv~R~~~p~~I~~I----~~~V~iPVig~~kigh---------~~Ea~~L~   86 (287)
T TIGR00343        22 QAKIAEEAGAVAVMALERVPADI-RA-SGGVARMSDPKMIKEI----MDAVSIPVMAKVRIGH---------FVEAQILE   86 (287)
T ss_pred             HHHHHHHcCceEEEeeccCchhh-Hh-cCCeeecCCHHHHHHH----HHhCCCCEEEEeeccH---------HHHHHHHH
Confidence            46888999987776655667764 33 3577889999986655    4457999999999873         23367777


Q ss_pred             HcCCCEEEEecCcc----------------------------------------ccccCCCC------------------
Q psy2386         143 SAGCRTFIVHARNA----------------------------------------FLKKLNPK------------------  164 (311)
Q Consensus       143 ~~G~~~itvh~Rt~----------------------------------------~~~G~~g~------------------  164 (311)
                      +.|+|+|--+-|..                                        ...||+|.                  
T Consensus        87 ~~GvDiIDeTe~lrPade~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~  166 (287)
T TIGR00343        87 ALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQI  166 (287)
T ss_pred             HcCCCEEEccCCCCcHHHHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHH
Confidence            78887775221100                                        01233332                  


Q ss_pred             ----cC------CCCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         165 ----QN------RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       165 ----~~------~~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                          ..      .....++++.++++++.. ++||+  +.|||.|++|+..+++. ||||++|++++.
T Consensus       167 ~~~~~~~~~~~~a~~~~~~~elLkei~~~~-~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k  233 (287)
T TIGR00343       167 QNMLEEEDLAAVAKELRVPVELLLEVLKLG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  233 (287)
T ss_pred             hcccchhHHhhhhcccCCCHHHHHHHHHhC-CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence                00      011236899999999987 79998  99999999999999987 999999999985

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd04732 HisA HisA

Probab=99.02  E-value=1.5e-09  Score=97.20  Aligned_cols=89  Identities=19%  Similarity=0.308  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.++||.+++.+.+         .+.+++.++++++.+ ++||+++|||+|+++++++++. ||.|
T Consensus        30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~---------~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~Gad~v   99 (234)
T cd04732          30 DPVEVAKKWEEAGAKWLHVVDLDGAKGG---------EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLGVSRV   99 (234)
T ss_pred             CHHHHHHHHHHcCCCEEEEECCCccccC---------CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            3579999999999999999988763222         236899999999998 7999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.+|+++.++.+.+
T Consensus       100 vigs~~l~dp~~~~~i~~~~  119 (234)
T cd04732         100 IIGTAAVKNPELVKELLKEY  119 (234)
T ss_pred             EECchHHhChHHHHHHHHHc
Confidence            99999999999999988764

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.02  E-value=9.1e-09  Score=91.64  Aligned_cols=133  Identities=14%  Similarity=0.141  Sum_probs=93.0

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCCh--HHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP--LLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~--~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      ++.+.++|+|.|-+..  |.            ...|  +.+.++++.+++..++|+.+.+.       +    .+.++.+
T Consensus        81 v~~a~~aGad~I~~d~--~~------------~~~p~~~~~~~~i~~~~~~~~i~vi~~v~-------t----~ee~~~a  135 (221)
T PRK01130         81 VDALAAAGADIIALDA--TL------------RPRPDGETLAELVKRIKEYPGQLLMADCS-------T----LEEGLAA  135 (221)
T ss_pred             HHHHHHcCCCEEEEeC--CC------------CCCCCCCCHHHHHHHHHhCCCCeEEEeCC-------C----HHHHHHH
Confidence            4666788999887742  21            1123  56678888887744677776432       1    2445788


Q ss_pred             HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      .+.|+|++.++.+..  .+   ... ...+.+++.++++++.+ ++||++.|||.|++++.++++. ||+|++|++++..
T Consensus       136 ~~~G~d~i~~~~~g~--t~---~~~-~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~  208 (221)
T PRK01130        136 QKLGFDFIGTTLSGY--TE---ETK-KPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRP  208 (221)
T ss_pred             HHcCCCEEEcCCcee--ec---CCC-CCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCC
Confidence            999999998753311  11   000 12235789999999998 8999999999999999999987 9999999998765


Q ss_pred             CcchHHhH
Q psy2386         221 PFLMSNFD  228 (311)
Q Consensus       221 P~i~~~~~  228 (311)
                      ++..+++.
T Consensus       209 ~~~~~~~~  216 (221)
T PRK01130        209 EEITKWFV  216 (221)
T ss_pred             HHHHHHHH
Confidence            55544443

>cd00945 Aldolase_Class_I Class I aldolases

Probab=99.01  E-value=2.2e-08  Score=86.69  Aligned_cols=144  Identities=17%  Similarity=0.112  Sum_probs=113.5

Q ss_pred             CCCeEEEecCCC----HHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccc--cce
Q psy2386          45 EHPIAFQVGDNE----PKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EID  116 (311)
Q Consensus        45 ~~p~~~Ql~g~~----~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~p  116 (311)
                      ..|+++++..++    .++..+.++.+.++|+|+|.+.  .+++..            .+++.+.+.++++.+.+  ++|
T Consensus        48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~------------~~~~~~~~~~~~i~~~~~~~~p  115 (201)
T cd00945          48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKE------------GDWEEVLEEIAAVVEAADGGLP  115 (201)
T ss_pred             CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhC------------CCHHHHHHHHHHHHHHhcCCce
Confidence            578999999988    8999999999999999999984  332221            15788888888988874  899


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGI  195 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI  195 (311)
                      +.++...+..  .+.+.+.++++.+.+.|++.|..+....  .          +..+++.++++++..+ ++||+..||+
T Consensus       116 v~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~~~~--~----------~~~~~~~~~~i~~~~~~~~~v~~~gg~  181 (201)
T cd00945         116 LKVILETRGL--KTADEIAKAARIAAEAGADFIKTSTGFG--G----------GGATVEDVKLMKEAVGGRVGVKAAGGI  181 (201)
T ss_pred             EEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCCCCC--C----------CCCCHHHHHHHHHhcccCCcEEEECCC
Confidence            9999998766  1233466677778889999998764321  1          1258888999988764 5899999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEe
Q psy2386         196 KTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmig  214 (311)
                      .+++.+.+.+.. |+|+++|
T Consensus       182 ~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         182 KTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             CCHHHHHHHHHhccceeecC
Confidence            999999999986 9999875

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.01  E-value=1.2e-08  Score=91.88  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=102.6

Q ss_pred             EEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe----
Q psy2386          49 AFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR----  122 (311)
Q Consensus        49 ~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR----  122 (311)
                      =+|++|.  +.++    ++.+-++|++-|=|              |+..++||+++.++.+...+.  +-|++-.+    
T Consensus        78 pi~vGGGIrs~e~----v~~~l~~Ga~kvvi--------------gt~a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v  137 (234)
T PRK13587         78 DIEVGGGIRTKSQ----IMDYFAAGINYCIV--------------GTKGIQDTDWLKEMAHTFPGR--IYLSVDAYGEDI  137 (234)
T ss_pred             eEEEcCCcCCHHH----HHHHHHCCCCEEEE--------------CchHhcCHHHHHHHHHHcCCC--EEEEEEeeCCEE
Confidence            3777663  3443    23444578877655              577789999999999887543  33444433    


Q ss_pred             --ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         123 --IGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       123 --~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                        .||.+.... .+.++++.+++.|+..+.+..-  ..+.+|           .|++.++++.+.. ++||++.|||+|+
T Consensus       138 ~~~gw~~~~~~-~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-----------~~~~li~~l~~~~-~ipvi~~GGi~s~  204 (234)
T PRK13587        138 KVNGWEEDTEL-NLFSFVRQLSDIPLGGIIYTDIAKDGKMSG-----------PNFELTGQLVKAT-TIPVIASGGIRHQ  204 (234)
T ss_pred             EecCCcccCCC-CHHHHHHHHHHcCCCEEEEecccCcCCCCc-----------cCHHHHHHHHHhC-CCCEEEeCCCCCH
Confidence              256543332 4689999999999999888643  333333           5899999999886 8999999999999


Q ss_pred             HHHHHHHhh-cCEEEEehhhhh
Q psy2386         199 KEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa~l~  219 (311)
                      +|+.++++. +++|.+|++++.
T Consensus       205 edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        205 QDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             HHHHHHHHcCCCEEEEhHHHHh
Confidence            999999976 999999999987

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.01  E-value=7.2e-09  Score=88.86  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=90.1

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      +.+.++|+|.|-|-+              ..=.+|+.+.++++.+++.. .++..-+..           .|=+..+.++
T Consensus        58 ~~l~~aGadIIAlDa--------------T~R~Rp~~l~~li~~i~~~~-~l~MADist-----------~ee~~~A~~~  111 (192)
T PF04131_consen   58 DALAEAGADIIALDA--------------TDRPRPETLEELIREIKEKY-QLVMADIST-----------LEEAINAAEL  111 (192)
T ss_dssp             HHHHHCT-SEEEEE---------------SSSS-SS-HHHHHHHHHHCT-SEEEEE-SS-----------HHHHHHHHHT
T ss_pred             HHHHHcCCCEEEEec--------------CCCCCCcCHHHHHHHHHHhC-cEEeeecCC-----------HHHHHHHHHc
Confidence            445568999998863              12256688999999999987 788876653           4557888999


Q ss_pred             CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      |+|.|   +-|  +.||.+....  ...||++++++++.  ++|||+-|+|+||+++.++++. |++|.||.+.-.--++
T Consensus       112 G~D~I---~TT--LsGYT~~t~~--~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITrP~~I  182 (192)
T PF04131_consen  112 GFDII---GTT--LSGYTPYTKG--DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITRPQEI  182 (192)
T ss_dssp             T-SEE---E-T--TTTSSTTSTT--SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-HHHH
T ss_pred             CCCEE---Ecc--cccCCCCCCC--CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCCHHHH
Confidence            99999   444  6777654333  44699999999985  6999999999999999999987 9999999877443334


Q ss_pred             hHHhHh
Q psy2386         224 MSNFDL  229 (311)
Q Consensus       224 ~~~~~~  229 (311)
                      .+++.+
T Consensus       183 t~~F~~  188 (192)
T PF04131_consen  183 TKRFVD  188 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.99  E-value=2.3e-09  Score=97.66  Aligned_cols=89  Identities=18%  Similarity=0.215  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.|+++..++...         ....+++.++++++.+ ++||++.|||+|.+|+.+++.. |++|
T Consensus        31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~---------~~~~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~Ga~~v  100 (254)
T TIGR00735        31 DPVELAQRYDEEGADELVFLDITASSE---------GRTTMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAGADKV  100 (254)
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCcccc---------cChhhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            357999999999999999998875211         1236899999999998 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.||+++.++.+.+
T Consensus       101 ivgt~~~~~p~~~~~~~~~~  120 (254)
T TIGR00735       101 SINTAAVKNPELIYELADRF  120 (254)
T ss_pred             EEChhHhhChHHHHHHHHHc
Confidence            99999999999999988754

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=98.91  E-value=1e-07  Score=84.68  Aligned_cols=141  Identities=13%  Similarity=0.156  Sum_probs=101.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|++++=+..++.+    ++.+.++|+|+|-+.              ...+ .++.+.++++..+. .++.+.+-+. +
T Consensus        72 ~iPi~~~~~i~~~~~----v~~~~~~Gad~v~l~--------------~~~~-~~~~~~~~~~~~~~-~g~~~~v~v~-~  130 (217)
T cd00331          72 SLPVLRKDFIIDPYQ----IYEARAAGADAVLLI--------------VAAL-DDEQLKELYELARE-LGMEVLVEVH-D  130 (217)
T ss_pred             CCCEEECCeecCHHH----HHHHHHcCCCEEEEe--------------eccC-CHHHHHHHHHHHHH-cCCeEEEEEC-C
Confidence            678877655577753    455668999999885              1112 23677778777654 4555544443 1


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~  203 (311)
                                .+-++.+.+.|++.+.+|+|+....           +.+++.+.++++.+ +++||++.|||.|++|+.+
T Consensus       131 ----------~~e~~~~~~~g~~~i~~t~~~~~~~-----------~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~  189 (217)
T cd00331         131 ----------EEELERALALGAKIIGINNRDLKTF-----------EVDLNTTERLAPLIPKDVILVSESGISTPEDVKR  189 (217)
T ss_pred             ----------HHHHHHHHHcCCCEEEEeCCCcccc-----------CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHH
Confidence                      1225667889999999998864211           24778899999875 3699999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         204 HLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      +++. +|||++|++++..+...+.+
T Consensus       190 ~~~~Ga~gvivGsai~~~~~p~~~~  214 (217)
T cd00331         190 LAEAGADAVLIGESLMRAPDPGAAL  214 (217)
T ss_pred             HHHcCCCEEEECHHHcCCCCHHHHH
Confidence            9987 99999999999877654443

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.88  E-value=6.1e-08  Score=87.52  Aligned_cols=143  Identities=19%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC----hHHHHHHHHHH-hccccceeEEEE
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK----PLLVSDCIKAM-RDSVEIDITVKH  121 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~----~~~~~~iv~~v-~~~~~~pvsvKi  121 (311)
                      .+-+|++|.=- .  +-++.+-++|++.|-||              +.+.++    |+++.++.+.. .+.+-+-+.+|.
T Consensus        76 ~~~v~vGGGIr-~--e~v~~~l~aGa~rVvIG--------------S~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~  138 (253)
T TIGR02129        76 PGGLQVGGGIN-D--TNAQEWLDEGASHVIVT--------------SWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRK  138 (253)
T ss_pred             CCCEEEeCCcC-H--HHHHHHHHcCCCEEEEC--------------cHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEE
Confidence            36678877643 2  44555667899988875              555555    88999999988 444333333431


Q ss_pred             ---------eccCCCCCcHHHHH-HHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         122 ---------RIGIDDINSYDFVR-DFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       122 ---------R~g~~~~~~~~~~~-e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                               --||...... .+. ++++.+++. +..|.++.  |..+++|           .|++.++++++.. ++||
T Consensus       139 ~~~g~~~V~~~GW~~~t~~-~~~~e~~~~~~~~-~~~il~TdI~rDGtl~G-----------~dlel~~~l~~~~-~ipV  204 (253)
T TIGR02129       139 TQDGRWIVAMNKWQTITDL-ELNAETLEELSKY-CDEFLIHAADVEGLCKG-----------IDEELVSKLGEWS-PIPI  204 (253)
T ss_pred             cCCCcEEEEECCCcccCCC-ChHHHHHHHHHhh-CCEEEEeeecccCcccc-----------CCHHHHHHHHhhC-CCCE
Confidence                     1257654433 356 889999999 99999884  4444455           5999999999986 8999


Q ss_pred             EEecCCCCHHHHHHHHh---hcCEEEEehhhhhC
Q psy2386         190 IINGGIKTKKEIDLHLN---YIDGVMLGREAYKN  220 (311)
Q Consensus       190 i~nGgI~s~~da~~~l~---~adgVmigRa~l~~  220 (311)
                      |++|||.|.+|+.++.+   ...++.+|++++.-
T Consensus       205 IASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~f  238 (253)
T TIGR02129       205 TYAGGAKSIDDLDLVDELSKGKVDLTIGSALDIF  238 (253)
T ss_pred             EEECCCCCHHHHHHHHHhcCCCCcEEeeehHHHh
Confidence            99999999999998843   27789999998653

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.87  E-value=1e-07  Score=89.06  Aligned_cols=141  Identities=16%  Similarity=0.165  Sum_probs=100.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      ++.+.+ |..++++.++.++++. |  .|.|-+-...               -+-+.+.+.++.+++....|+.++=.++
T Consensus        84 ~v~~Sv-G~t~e~~~r~~~lv~a-~~~~d~i~~D~ah---------------g~s~~~~~~i~~i~~~~p~~~vi~GnV~  146 (321)
T TIGR01306        84 FASISV-GVKACEYEFVTQLAEE-ALTPEYITIDIAH---------------GHSNSVINMIKHIKTHLPDSFVIAGNVG  146 (321)
T ss_pred             EEEEEc-CCCHHHHHHHHHHHhc-CCCCCEEEEeCcc---------------CchHHHHHHHHHHHHhCCCCEEEEecCC
Confidence            444554 7788889888887765 4  4765553211               1346788899999998766644442222


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcH--HHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKY--NFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~--~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                               ..+.++.+.++|+|.|.|+   |++.|..-..|.     +-.+|  ..+.++++.+ ++|||+.|||++..
T Consensus       147 ---------t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~-----g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~  211 (321)
T TIGR01306       147 ---------TPEAVRELENAGADATKVGIGPGKVCITKIKTGF-----GTGGWQLAALRWCAKAA-RKPIIADGGIRTHG  211 (321)
T ss_pred             ---------CHHHHHHHHHcCcCEEEECCCCCccccceeeecc-----CCCchHHHHHHHHHHhc-CCeEEEECCcCcHH
Confidence                     2578999999999999998   564322211111     11244  4788998887 89999999999999


Q ss_pred             HHHHHHhh-cCEEEEehhhhh
Q psy2386         200 EIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~  219 (311)
                      |+.++|.. ||+||+||.+-+
T Consensus       212 Di~KALa~GAd~Vmig~~~ag  232 (321)
T TIGR01306       212 DIAKSIRFGASMVMIGSLFAG  232 (321)
T ss_pred             HHHHHHHcCCCEEeechhhcC
Confidence            99999987 999999988744

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PLN02535 glycolate oxidase

Probab=98.86  E-value=9.1e-08  Score=91.00  Aligned_cols=160  Identities=16%  Similarity=0.157  Sum_probs=112.0

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCccc--------------------Ccc----
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFG--------------------AIL----   95 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G--------------------~~L----   95 (311)
                      +.|...||.= .|.+...+-.++++++||..|=+..=+|..-.+    +.++.                    +.+    
T Consensus       123 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  202 (364)
T PLN02535        123 NAVRFLQLYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNFEGLLSTEVVSDKGSGLEAFA  202 (364)
T ss_pred             CCCeEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhHhhhhccCCCccccccHHHHH
Confidence            4689999996 568888888899999999999888777653211    11110                    000    


Q ss_pred             --cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc
Q psy2386          96 --MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK  173 (311)
Q Consensus        96 --l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~  173 (311)
                        .-++.+--+-++.+++..+.||.||==.   .       .+-++.+.++|+|+|.+.+.-....++        .+.-
T Consensus       203 ~~~~~~~~tW~~i~~lr~~~~~PvivKgV~---~-------~~dA~~a~~~GvD~I~vsn~GGr~~d~--------~~~t  264 (364)
T PLN02535        203 SETFDASLSWKDIEWLRSITNLPILIKGVL---T-------REDAIKAVEVGVAGIIVSNHGARQLDY--------SPAT  264 (364)
T ss_pred             HhccCCCCCHHHHHHHHhccCCCEEEecCC---C-------HHHHHHHHhcCCCEEEEeCCCcCCCCC--------ChHH
Confidence              0123333366788888889999999221   1       245788999999999986432211111        1233


Q ss_pred             HHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         174 YNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       174 ~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .+.+.++++.+ .++|||+.|||++..|+.++|.. ||+|++||+++..+.
T Consensus       265 ~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~  315 (364)
T PLN02535        265 ISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLA  315 (364)
T ss_pred             HHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhh
Confidence            57777887764 25999999999999999999987 999999999977544

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.86  E-value=9.3e-08  Score=85.88  Aligned_cols=137  Identities=17%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             EEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh-ccccceeEEEEe----
Q psy2386          50 FQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR-DSVEIDITVKHR----  122 (311)
Q Consensus        50 ~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~-~~~~~pvsvKiR----  122 (311)
                      +|++|  .+.++.    +.+-+.|++-|=|              |+..+++|+++.++.+..- +.  +-+++-+|    
T Consensus        76 v~vGGGIrs~e~~----~~~l~~Ga~kvvi--------------gt~a~~~p~~~~~~~~~~g~~~--ivvslD~~~~~~  135 (232)
T PRK13586         76 IQVGGGIRDIEKA----KRLLSLDVNALVF--------------STIVFTNFNLFHDIVREIGSNR--VLVSIDYDNTKR  135 (232)
T ss_pred             EEEeCCcCCHHHH----HHHHHCCCCEEEE--------------CchhhCCHHHHHHHHHHhCCCC--EEEEEEcCCCCE
Confidence            67765  344443    3333567777654              5778899999999998883 33  33444442    


Q ss_pred             ---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         123 ---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       123 ---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                         -||.... . .+.++++.+++.|+..+.++.-  ..+.+|           .|++.++++++. + .|++++|||.|
T Consensus       136 v~~~gw~~~~-~-~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G-----------~d~el~~~~~~~-~-~~viasGGv~s  200 (232)
T PRK13586        136 VLIRGWKEKS-M-EVIDGIKKVNELELLGIIFTYISNEGTTKG-----------IDYNVKDYARLI-R-GLKEYAGGVSS  200 (232)
T ss_pred             EEccCCeeCC-C-CHHHHHHHHHhcCCCEEEEecccccccCcC-----------cCHHHHHHHHhC-C-CCEEEECCCCC
Confidence               1565422 2 4679999999999999998854  333444           589999998875 3 46999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      .+|+.++... +|||++|++++.+-
T Consensus       201 ~~Dl~~l~~~G~~gvivg~Aly~g~  225 (232)
T PRK13586        201 DADLEYLKNVGFDYIIVGMAFYLGK  225 (232)
T ss_pred             HHHHHHHHHCCCCEEEEehhhhcCc
Confidence            9999999865 99999999998653

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=98.84  E-value=1.8e-07  Score=88.79  Aligned_cols=154  Identities=17%  Similarity=0.174  Sum_probs=112.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-----------------------------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-----------------------------   91 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~-----------------------------   91 (311)
                      +.|.-.||.-.+.+......++++++||+.|=+..=+|..-.+    +.++                             
T Consensus       115 ~~~~wfQLY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~~p~w~~~~~~~~~  194 (361)
T cd04736         115 DGDLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGILHPRWLLRFLRNGM  194 (361)
T ss_pred             CCCeEEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhccCchhhhhhccccc
Confidence            4589999999887777777889999999999998665533221    0111                             


Q ss_pred             ----------cCc-------c--cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386          92 ----------GAI-------L--MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus        92 ----------G~~-------L--l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh  152 (311)
                                +..       +  .-++.+.-+.++.+++..+.|+.+|   |...       .+-++.+.+.|+|+|.|.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV~~-------~eda~~a~~~G~d~I~VS  264 (361)
T cd04736         195 PQLANFASDDAIDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GIVT-------AEDAKRCIELGADGVILS  264 (361)
T ss_pred             ccccccccccccchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cCCC-------HHHHHHHHHCCcCEEEEC
Confidence                      000       0  1123344457888999889999999   3321       456888899999999874


Q ss_pred             --cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         153 --ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       153 --~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                        |.+.+ .+         .+...+.+.++++.+ ++|||+.|||++..|+.+.+.. ||+||+||+++.
T Consensus       265 nhGGrql-d~---------~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~  323 (361)
T cd04736         265 NHGGRQL-DD---------AIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLY  323 (361)
T ss_pred             CCCcCCC-cC---------CccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence              44331 11         124578889999888 6999999999999999999987 999999999864

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=98.82  E-value=8.7e-08  Score=84.14  Aligned_cols=141  Identities=10%  Similarity=0.183  Sum_probs=103.5

Q ss_pred             HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec-c----CC-------CCCcHH
Q psy2386          66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI-G----ID-------DINSYD  132 (311)
Q Consensus        66 ~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~-g----~~-------~~~~~~  132 (311)
                      .+-.+|+|-|-||              ++-+.||+++.++.+..-..+ =+.+..|-+. |    |.       ..... 
T Consensus        91 ~ll~aGADKVSIN--------------saAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~-  155 (256)
T COG0107          91 KLLRAGADKVSIN--------------SAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGL-  155 (256)
T ss_pred             HHHHcCCCeeeeC--------------hhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCc-
Confidence            4556799999999              456789999999998886654 2334445432 1    11       11112 


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCc--cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARN--AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I  208 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt--~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a  208 (311)
                      +..+|++.+++.|+..|.+....  ....|           .|.++++.+++.+ ++|||++||.-++++..+.+..  |
T Consensus       156 d~~~Wa~~~e~~GAGEIlLtsmD~DGtk~G-----------yDl~l~~~v~~~v-~iPvIASGGaG~~ehf~eaf~~~~a  223 (256)
T COG0107         156 DAVEWAKEVEELGAGEILLTSMDRDGTKAG-----------YDLELTRAVREAV-NIPVIASGGAGKPEHFVEAFTEGKA  223 (256)
T ss_pred             CHHHHHHHHHHcCCceEEEeeecccccccC-----------cCHHHHHHHHHhC-CCCEEecCCCCcHHHHHHHHHhcCc
Confidence            46899999999999999887544  33334           4899999999999 8999999999999999999965  9


Q ss_pred             CEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         209 DGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       209 dgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      |++..+.=+..+-.-..++++++..
T Consensus       224 dAaLAAsiFH~~~~~i~evK~yL~~  248 (256)
T COG0107         224 DAALAASIFHFGEITIGEVKEYLAE  248 (256)
T ss_pred             cHHHhhhhhhcCcccHHHHHHHHHH
Confidence            9888776665555555566655543

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=98.81  E-value=4.4e-08  Score=85.89  Aligned_cols=143  Identities=24%  Similarity=0.303  Sum_probs=97.7

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      +-|++++++|+-.|------|...  +...|-+-|.||+.+.+|.++    +++||..|+|+|--        . -++.|
T Consensus        31 EQA~IAE~aGAvAVMaLervPaDi--R~aGGVaRMaDp~~i~eim~a----VsIPVMAKvRIGH~--------~-EA~iL   95 (296)
T COG0214          31 EQARIAEEAGAVAVMALERVPADI--RAAGGVARMADPKMIEEIMDA----VSIPVMAKVRIGHF--------V-EAQIL   95 (296)
T ss_pred             HHHHHHHhcCceeEeehhhCcHHH--HhccCccccCCHHHHHHHHHh----cccceeeeeecchh--------H-HHHHH
Confidence            346788899987776655667764  233577889999998888776    78999999999832        2 26788


Q ss_pred             HHcCCCEEE-----------Ee-------------cCcc------c--------cccCCCCcC-----------------
Q psy2386         142 SSAGCRTFI-----------VH-------------ARNA------F--------LKKLNPKQN-----------------  166 (311)
Q Consensus       142 ~~~G~~~it-----------vh-------------~Rt~------~--------~~G~~g~~~-----------------  166 (311)
                      +..|+|+|-           .|             +|.-      .        .+|-.|.-+                 
T Consensus        96 ealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~  175 (296)
T COG0214          96 EALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRR  175 (296)
T ss_pred             HHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999884           11             1110      0        111111100                 


Q ss_pred             --------C----CCCcCcHHHHHHHHHhCCCCeE--EEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         167 --------R----KIPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       167 --------~----~~~~~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                              .    ..-.+-++++.++++.- ++||  ++.|||.||.|+.-+++. ||||.+|+|.+.-
T Consensus       176 l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS  243 (296)
T COG0214         176 LQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKS  243 (296)
T ss_pred             HHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence                    0    00012356677777664 7888  589999999999999987 9999999998653

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=98.81  E-value=1e-07  Score=86.24  Aligned_cols=151  Identities=18%  Similarity=0.191  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccC-----------ChHHHHHHHHHHhccccceeEE--EEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT-----------KPLLVSDCIKAMRDSVEIDITV--KHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~-----------~~~~~~~iv~~v~~~~~~pvsv--KiR  122 (311)
                      +.+.+.+.++.+++.|+|.|||++  |...-.-+|-   ..+           +.+...++++.+++.+++|+.+  +..
T Consensus        12 ~~~~~~~~~~~l~~~Gad~iel~i--PfsdPv~DG~---~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n   86 (242)
T cd04724          12 DLETTLEILKALVEAGADIIELGI--PFSDPVADGP---VIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN   86 (242)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECC--CCCCCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence            667899999999999999999997  7655443321   112           2357788999999877888644  433


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEE---e-----------------------cCccc------------------c
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIV---H-----------------------ARNAF------------------L  158 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itv---h-----------------------~Rt~~------------------~  158 (311)
                      .-+..+     ...|++.+.++|++.+++   |                       +-|..                  .
T Consensus        87 ~~~~~G-----~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~  161 (242)
T cd04724          87 PILQYG-----LERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSR  161 (242)
T ss_pred             HHHHhC-----HHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeC
Confidence            211110     245677777777777776   2                       11100                  0


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      .|..|.... ..+...+.++++++.. ++||...|||++.+++.++.+.||||.+|++++
T Consensus       162 ~g~tG~~~~-~~~~~~~~i~~lr~~~-~~pI~vggGI~~~e~~~~~~~~ADgvVvGSaiv  219 (242)
T cd04724         162 TGVTGARTE-LPDDLKELIKRIRKYT-DLPIAVGFGISTPEQAAEVAKYADGVIVGSALV  219 (242)
T ss_pred             CCCCCCccC-CChhHHHHHHHHHhcC-CCcEEEEccCCCHHHHHHHHccCCEEEECHHHH
Confidence            122222111 1122357888999875 899999999999999999887799999999884

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=98.75  E-value=5.2e-07  Score=81.14  Aligned_cols=150  Identities=11%  Similarity=0.158  Sum_probs=102.0

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      +-+|++|.- ..+..+ +.+.++|++-|=||              +...++ +++.++++...+. .+-|++-++-+...
T Consensus        79 ~~v~vgGGi-r~~edv-~~~l~~Ga~~viig--------------t~~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~  140 (233)
T cd04723          79 LGLWVDGGI-RSLENA-QEWLKRGASRVIVG--------------TETLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLL  140 (233)
T ss_pred             CCEEEecCc-CCHHHH-HHHHHcCCCeEEEc--------------ceeccc-hHHHHHHHhcCCC-CeEEEEeccCCeec
Confidence            346776632 112222 23334677766554              556788 9999999998552 34455555544110


Q ss_pred             -CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386         128 -INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       128 -~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                       ......+.++++.+++. ++.+++..-.. -...+        ..|++.++++.+.. ++||++.|||+|.+|+.+++.
T Consensus       141 ~~~~~~~~~~~~~~~~~~-~~~li~~di~~-~G~~~--------g~~~~~~~~i~~~~-~ipvi~~GGi~s~edi~~l~~  209 (233)
T cd04723         141 KPTDFIGPEELLRRLAKW-PEELIVLDIDR-VGSGQ--------GPDLELLERLAARA-DIPVIAAGGVRSVEDLELLKK  209 (233)
T ss_pred             cccCcCCHHHHHHHHHHh-CCeEEEEEcCc-cccCC--------CcCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHH
Confidence             00011367899999999 99998875542 11111        25899999999987 799999999999999999998


Q ss_pred             h-cCEEEEehhhhhCCcchHH
Q psy2386         207 Y-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~i~~~  226 (311)
                      . +++|.+|++++.+-.-+.+
T Consensus       210 ~G~~~vivGsal~~g~~~~~~  230 (233)
T cd04723         210 LGASGALVASALHDGGLTLED  230 (233)
T ss_pred             cCCCEEEEehHHHcCCCCHHH
Confidence            6 9999999999887544443

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=98.74  E-value=2.6e-07  Score=89.25  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=79.8

Q ss_pred             CChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~  174 (311)
                      .+++.+.++++.+|+.++ +||.+|.-.+.+       ..++++.++..|+|+|+|.|.... .|.++... ...+..-.
T Consensus       196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~-------~~~~a~~~~~~g~D~I~VsG~~Gg-tg~~~~~~~~~~g~pt~  267 (392)
T cd02808         196 YSIEDLAQLIEDLREATGGKPIGVKLVAGHG-------EGDIAAGVAAAGADFITIDGAEGG-TGAAPLTFIDHVGLPTE  267 (392)
T ss_pred             CCHHHHHHHHHHHHHhCCCceEEEEECCCCC-------HHHHHHHHHHcCCCEEEEeCCCCC-CCCCcccccccCCccHH
Confidence            356678999999999987 999999886521       247788888888999999876421 11111000 00111112


Q ss_pred             HHHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         175 NFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       175 ~~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ..+.++.+.+      .++||++.|||+|..|+.+++.. ||+|.+||+++.
T Consensus       268 ~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~  319 (392)
T cd02808         268 LGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALI  319 (392)
T ss_pred             HHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHHH
Confidence            2333333321      25999999999999999999987 999999999985

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PLN02979 glycolate oxidase

Probab=98.74  E-value=8.9e-07  Score=83.77  Aligned_cols=157  Identities=15%  Similarity=0.173  Sum_probs=109.9

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcccC-------cc-----------------
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGA-------IL-----------------   95 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G~-------~L-----------------   95 (311)
                      +.+...||. -.|.+...+-.++++++||..|=+..=+|..-.+    +.++-.       .+                 
T Consensus       120 ~~~~wfQLY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  199 (366)
T PLN02979        120 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA  199 (366)
T ss_pred             CCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCcccchhhhhhccccCCCcccchhHH
Confidence            358999998 4577888888899999999999998776655111    111100       00                 


Q ss_pred             -----cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          96 -----MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        96 -----l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                           .-+|.+-=+-++.+++..++||.||-=.   .       .+-++.+.++|+|+|.|.+.-....        ...
T Consensus       200 ~~~~~~~~~~ltW~dl~wlr~~~~~PvivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGGrql--------d~~  261 (366)
T PLN02979        200 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGARQL--------DYV  261 (366)
T ss_pred             HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC---C-------HHHHHHHHhcCCCEEEECCCCcCCC--------CCc
Confidence                 0122222355788899899999999332   1       3567889999999999965432111        111


Q ss_pred             cCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         171 ILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       171 ~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.-.+.+.++++.+ .++||++.|||++..|+.+.+.. ||+|++||.++.
T Consensus       262 p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~  312 (366)
T PLN02979        262 PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  312 (366)
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            23456777777764 35999999999999999999987 999999998864

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=98.74  E-value=4.3e-08  Score=86.03  Aligned_cols=89  Identities=15%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +.++++++..+.|+|.|++-.-|+...|         ...++++|+++++.+ .||+...|||+|.+|+.++|.. ||-|
T Consensus        31 DpVelA~~Y~e~GADElvFlDItAs~~g---------r~~~~~vv~r~A~~v-fiPltVGGGI~s~eD~~~ll~aGADKV  100 (256)
T COG0107          31 DPVELAKRYNEEGADELVFLDITASSEG---------RETMLDVVERVAEQV-FIPLTVGGGIRSVEDARKLLRAGADKV  100 (256)
T ss_pred             ChHHHHHHHHHcCCCeEEEEeccccccc---------chhHHHHHHHHHhhc-eeeeEecCCcCCHHHHHHHHHcCCCee
Confidence            3589999999999999998766653222         125889999999998 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .|.++++.||.+.+++.+.+
T Consensus       101 SINsaAv~~p~lI~~~a~~F  120 (256)
T COG0107         101 SINSAAVKDPELITEAADRF  120 (256)
T ss_pred             eeChhHhcChHHHHHHHHHh
Confidence            99999999999999987653

>KOG1606|consensus

Probab=98.73  E-value=8.3e-08  Score=83.01  Aligned_cols=152  Identities=20%  Similarity=0.250  Sum_probs=100.3

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      -|++++++|+-.|-.----|...  +...|-+-|.||..+.||    ++++++||..|.|+|-        ++| ++.|+
T Consensus        33 QA~iAE~aGACaVmalervPadi--R~~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGH--------FVE-AQIlE   97 (296)
T KOG1606|consen   33 QARIAEEAGACAVMALERVPADI--RAQGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGH--------FVE-AQILE   97 (296)
T ss_pred             HHHHHHhcCcceEeeeccCCHhH--HhcCCeeecCCHHHHHHH----HHhccchhhhhhhhhh--------hhH-HHHHH
Confidence            46788888976665555567653  233577889999876555    5558999999999972        333 67788


Q ss_pred             HcCCCEEE-----------------------E-ecCcc--------------ccccCCCCcC------------------
Q psy2386         143 SAGCRTFI-----------------------V-HARNA--------------FLKKLNPKQN------------------  166 (311)
Q Consensus       143 ~~G~~~it-----------------------v-h~Rt~--------------~~~G~~g~~~------------------  166 (311)
                      +.|+|+|.                       | -+|.-              ..+|-.|.-+                  
T Consensus        98 ~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~  177 (296)
T KOG1606|consen   98 ALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVL  177 (296)
T ss_pred             HhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcHHHHHHHHHHHHHHHHHH
Confidence            88888874                       0 01110              0111111100                  


Q ss_pred             --C---------CCCcCcHHHHHHHHHhCCCCeE--EEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         167 --R---------KIPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       167 --~---------~~~~~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                        .         ..-.+-++++++.++.- .+||  ++.|||.||.|+.-+++. ||||.+|+|.+..+.-++.....
T Consensus       178 ~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k~a~ai  254 (296)
T KOG1606|consen  178 KNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVKRARAI  254 (296)
T ss_pred             HcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHHHHHHH
Confidence              0         00012356666666654 7898  589999999999999987 99999999998887766665543

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=98.71  E-value=1.2e-07  Score=84.95  Aligned_cols=89  Identities=15%  Similarity=0.243  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.+++....+..+|         .+.+++.++++++.+ ++||++.|||+|.+|++++++. ||+|
T Consensus        31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g---------~~~~~~~i~~i~~~~-~~pv~~~GGI~~~ed~~~~~~~Ga~~v  100 (233)
T PRK00748         31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG---------KPVNLELIEAIVKAV-DIPVQVGGGIRSLETVEALLDAGVSRV  100 (233)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCccccC---------CcccHHHHHHHHHHC-CCCEEEcCCcCCHHHHHHHHHcCCCEE
Confidence            4689999999999999999876542233         125899999999987 7999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.+|.++.++.+.+
T Consensus       101 ilg~~~l~~~~~l~ei~~~~  120 (233)
T PRK00748        101 IIGTAAVKNPELVKEACKKF  120 (233)
T ss_pred             EECchHHhCHHHHHHHHHHh
Confidence            99999999998888887654

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.69  E-value=9e-07  Score=80.70  Aligned_cols=165  Identities=17%  Similarity=0.138  Sum_probs=105.6

Q ss_pred             CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcc-ccc
Q psy2386          47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDS-VEI  115 (311)
Q Consensus        47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~-~~~  115 (311)
                      .++.=+...  |++...++++.+.+.|+|.|||.  =|.+.-.-+|-      --+|-  -+.+.+.++++++++. .++
T Consensus        11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~   88 (256)
T TIGR00262        11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELG--VPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI   88 (256)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence            355555543  66788999999999999999994  45433222210      00111  2457788999999876 688


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc-------------
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA-------------  156 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~-------------  156 (311)
                      |+.  +-..++.--.+ -..+|++.+.++|++.+++|.                          -|.             
T Consensus        89 plv--~m~Y~Npi~~~-G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g  165 (256)
T TIGR00262        89 PIG--LLTYYNLIFRK-GVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG  165 (256)
T ss_pred             CEE--EEEeccHHhhh-hHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence            864  22111110000 124566666777777766552                          110             


Q ss_pred             -----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         157 -----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       157 -----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                           ...|++|..... .+...+.++++++.. +.||+..|||+|++++.++.+. ||||.+|++++
T Consensus       166 fiy~vs~~G~TG~~~~~-~~~~~~~i~~lr~~~-~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv  231 (256)
T TIGR00262       166 FVYLVSRAGVTGARNRA-ASALNELVKRLKAYS-AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIV  231 (256)
T ss_pred             CEEEEECCCCCCCcccC-ChhHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence                 012445532112 233578899999987 7899999999999999999987 99999999984

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=98.69  E-value=9.7e-07  Score=84.58  Aligned_cols=157  Identities=18%  Similarity=0.199  Sum_probs=108.1

Q ss_pred             CCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc------------------------c---
Q psy2386          45 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF------------------------G---   92 (311)
Q Consensus        45 ~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~------------------------G---   92 (311)
                      +.|.-.||.-. |.+...+..++++++||..|=|..=.|..-.+    +.++                        +   
T Consensus       137 ~~~~wfQlY~~~dr~~~~~ll~RA~~aG~~alvlTVD~pv~g~Rerd~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (383)
T cd03332         137 DAPRWFQLYWPKDDDLTESLLRRAEKAGYRVLVVTLDTWSLGWRPRDLDLGYLPFLRGIGIANYFSDPVFRKKLAEPVGE  216 (383)
T ss_pred             CCCcEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCchhhhhcCCCCCccccchhhhhccchhhhccccCCCC
Confidence            46899998865 78888888899999999998886444322111    0000                        0   


Q ss_pred             ------------Ccc---cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          93 ------------AIL---MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        93 ------------~~L---l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                                  +..   .-+|.+--+-++.+++.++.||.+|   |...       .+-++.+.+.|+|+|.|.+.-..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV~~-------~~dA~~a~~~G~d~I~vsnhGGr  286 (383)
T cd03332         217 DPEAPPPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GILH-------PDDARRAVEAGVDGVVVSNHGGR  286 (383)
T ss_pred             CcccccccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cCCC-------HHHHHHHHHCCCCEEEEcCCCCc
Confidence                        000   0122222356777888889999999   3321       35678889999999998533210


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                              +....+.-.+.+.++++.+. ++||++.|||++..|+.+.+.. ||+|++||+++.
T Consensus       287 --------~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~  342 (383)
T cd03332         287 --------QVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAY  342 (383)
T ss_pred             --------CCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence                    00112334677888887763 4999999999999999999987 999999999873

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.68  E-value=1.7e-06  Score=76.15  Aligned_cols=131  Identities=16%  Similarity=0.171  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec------cCC-----
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI------GID-----  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~------g~~-----  126 (311)
                      +++.+.|+.+.+.|.|+|.|.             || .--+.+.+.++++++|+.+++||.+--.-      +.|     
T Consensus        11 e~~~~ia~~v~~~gtDaI~VG-------------GS-~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~~   76 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVG-------------GS-LGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFFM   76 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEc-------------Cc-CCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEEE
Confidence            556667778889999999984             33 32378889999999999888998763110      000     


Q ss_pred             ----CC------------------------------------------------CcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386         127 ----DI------------------------------------------------NSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       127 ----~~------------------------------------------------~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                          ..                                                ...++...++...+..|++.|.+..-
T Consensus        77 sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~  156 (205)
T TIGR01769        77 SLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLEAG  156 (205)
T ss_pred             EeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEEcC
Confidence                00                                                11223333344444444444443211


Q ss_pred             ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         155 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       155 t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                             ||.    ..+.+.++++++++.+ ++|++..|||+|+++++++++. ||+|.+|
T Consensus       157 -------sGa----~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       157 -------SGA----SYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             -------CCC----CCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence                   121    2235789999999998 8999999999999999999875 9999987

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=98.66  E-value=1.1e-06  Score=78.48  Aligned_cols=141  Identities=14%  Similarity=0.221  Sum_probs=96.2

Q ss_pred             eEEEecC-CCHHHHHHHHHHHHHc-CCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          48 IAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +..+-.| .+.++-.+.|+++.+. |-++|-|-. |-|          -.|+.|+....+-.+.+.+. +.-|..=+.  
T Consensus        65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~----------~~Llpd~~~tv~aa~~L~~~-Gf~vlpyc~--  131 (248)
T cd04728          65 LLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDD----------KTLLPDPIETLKAAEILVKE-GFTVLPYCT--  131 (248)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCc----------cccccCHHHHHHHHHHHHHC-CCEEEEEeC--
Confidence            3344443 4688899999999886 446666641 222          24666665555444444322 322221111  


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                         ++     ...++++++.|++.|..+|..-   | +|     .+..+++.|+.+++.. ++|||..|||.|++|+.++
T Consensus       132 ---dd-----~~~ar~l~~~G~~~vmPlg~pI---G-sg-----~Gi~~~~~I~~I~e~~-~vpVI~egGI~tpeda~~A  193 (248)
T cd04728         132 ---DD-----PVLAKRLEDAGCAAVMPLGSPI---G-SG-----QGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDAAQA  193 (248)
T ss_pred             ---CC-----HHHHHHHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhC-CCcEEEeCCCCCHHHHHHH
Confidence               12     4789999999999997766642   1 11     1335789999999985 8999999999999999999


Q ss_pred             Hhh-cCEEEEehhhhh
Q psy2386         205 LNY-IDGVMLGREAYK  219 (311)
Q Consensus       205 l~~-adgVmigRa~l~  219 (311)
                      ++. ||+|++|+|...
T Consensus       194 melGAdgVlV~SAIt~  209 (248)
T cd04728         194 MELGADAVLLNTAIAK  209 (248)
T ss_pred             HHcCCCEEEEChHhcC
Confidence            987 999999999863

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=98.65  E-value=3.8e-07  Score=81.42  Aligned_cols=104  Identities=13%  Similarity=0.244  Sum_probs=76.2

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLN  162 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~  162 (311)
                      .|+..+++|+++.++..        -+++-.+      .||..     ...++.+.+.+.|+ .+.+..  |..+.+|  
T Consensus       107 igT~a~~~p~~l~~~~~--------vvslD~~~g~v~~~g~~~-----~~~~~~~~~~~~g~-~ii~tdI~~dGt~~G--  170 (221)
T TIGR00734       107 VATETLDITELLRECYT--------VVSLDFKEKFLDASGLFE-----SLEEVRDFLNSFDY-GLIVLDIHSVGTMKG--  170 (221)
T ss_pred             ecChhhCCHHHHHHhhh--------EEEEEeECCccccccccc-----cHHHHHHHHHhcCC-EEEEEECCccccCCC--
Confidence            46777889999887751        2333333      24442     24677788888998 666642  3222222  


Q ss_pred             CCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         163 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       163 g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                               .|++.++++++.+ ++|||+.|||.|++|+.++.+. +|+|++|++++.+
T Consensus       171 ---------~d~eli~~i~~~~-~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~g  219 (221)
T TIGR00734       171 ---------PNLELLTKTLELS-EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHKG  219 (221)
T ss_pred             ---------CCHHHHHHHHhhC-CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhCC
Confidence                     5899999999987 7999999999999999997765 9999999999764

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=98.65  E-value=1.9e-06  Score=82.40  Aligned_cols=155  Identities=14%  Similarity=0.175  Sum_probs=106.9

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcccCc------c---cCCh-----------
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGAI------L---MTKP-----------   99 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G~~------L---l~~~-----------   99 (311)
                      +.|.-.||. -.|.+...+..++++++||..|=+..=+|..-.+    +.++-.-      +   +.+|           
T Consensus       121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~~~~~~~~~~~~p~w~~~~~~~~~  200 (381)
T PRK11197        121 KRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGR  200 (381)
T ss_pred             CCCeEEEEEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCchhhhHHhhhcCchhhhhhccccC
Confidence            468999995 4588888888899999999999998777743221    1111000      0   0000           


Q ss_pred             ------------------H------------HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386         100 ------------------L------------LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF  149 (311)
Q Consensus       100 ------------------~------------~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i  149 (311)
                                        +            +-=+=++.+++.++.||.||==.          ..+-++.+.+.|+|+|
T Consensus       201 ~~~~~n~~~~~~~~~g~~~~~~~~~~~~~~~ltW~di~~lr~~~~~pvivKgV~----------s~~dA~~a~~~Gvd~I  270 (381)
T PRK11197        201 PHDLGNISAYLGKPTGLEDYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGIL----------DPEDARDAVRFGADGI  270 (381)
T ss_pred             CCcccccccccccccchhHHHHHHHhccCCCCCHHHHHHHHHhCCCCEEEEecC----------CHHHHHHHHhCCCCEE
Confidence                              0            00122677888889999999332          1456788899999999


Q ss_pred             EEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         150 IVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       150 tvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .|.+  .+. ..+         .+.-.+.+.++.+.+ .++||++.|||++..|+.+.|.. ||+||+||.++.
T Consensus       271 ~Vs~hGGr~-~d~---------~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~  334 (381)
T PRK11197        271 VVSNHGGRQ-LDG---------VLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVY  334 (381)
T ss_pred             EECCCCCCC-CCC---------cccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHH
Confidence            9853  332 111         122356677776655 36999999999999999999987 999999999854

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=98.65  E-value=8.4e-07  Score=84.57  Aligned_cols=154  Identities=18%  Similarity=0.218  Sum_probs=103.5

Q ss_pred             CCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-----------------------------
Q psy2386          46 HPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-----------------------------   91 (311)
Q Consensus        46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~-----------------------------   91 (311)
                      .|...||.- .|.+...+..++++++||+.+-++.=+|..-.+    +.++                             
T Consensus       110 ~~~~~Qly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~~~~~~~~~~~~~~p~~~~~~~~~~~  189 (356)
T PF01070_consen  110 GPLWFQLYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPPKLSPRNLLDGASHPRSGMPRLENNE  189 (356)
T ss_dssp             SEEEEEEEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCSTTHCTTCGTTTTTTT-TTTGG-----
T ss_pred             CCeEEEEEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCcccccccccccccCcccccccccccc
Confidence            789999954 588888888899999999988876543321110    0000                             


Q ss_pred             ----c--C----cc---cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCcc
Q psy2386          92 ----G--A----IL---MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNA  156 (311)
Q Consensus        92 ----G--~----~L---l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~  156 (311)
                          +  .    .+   .-++...-+-++.+++.+++||.||==+.          .+-++.+.+.|+++|.|.  |.+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~~~~~~~~pvivKgv~~----------~~da~~~~~~G~~~i~vs~hGGr~  259 (356)
T PF01070_consen  190 APPPGDNGAAAARFVGSQFDPSLTWDDIEWIRKQWKLPVIVKGVLS----------PEDAKRAVDAGVDGIDVSNHGGRQ  259 (356)
T ss_dssp             CSSSSTSTCHHHHHHHCHB-TT-SHHHHHHHHHHCSSEEEEEEE-S----------HHHHHHHHHTT-SEEEEESGTGTS
T ss_pred             cccCCCcchhHHHHHHHhcCCCCCHHHHHHHhcccCCceEEEeccc----------HHHHHHHHhcCCCEEEecCCCccc
Confidence                0  0    00   01333444557888888999999994421          355789999999999995  4433


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ...|          +.-.+.+.++++.++ ++||++.|||++..|+.+.+.. ||+|.+||+++.
T Consensus       260 ~d~~----------~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~  314 (356)
T PF01070_consen  260 LDWG----------PPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLY  314 (356)
T ss_dssp             STTS-----------BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred             Cccc----------cccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence            1111          234577778887654 6999999999999999999987 999999998854

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=98.64  E-value=1.8e-07  Score=83.96  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.|+++...+...+         .+.+++.++++++.+ ++||+++|||+|.+|+.++++. |++|
T Consensus        31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~---------~~~n~~~~~~i~~~~-~~pv~~~ggi~~~~d~~~~~~~G~~~v  100 (232)
T TIGR03572        31 DPVNAARIYNAKGADELIVLDIDASKRG---------REPLFELISNLAEEC-FMPLTVGGGIRSLEDAKKLLSLGADKV  100 (232)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCcccC---------CCCCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            3689999999999999999987652111         236899999999987 7999999999999999998876 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.+|.++.++.+.+
T Consensus       101 ilg~~~l~~~~~~~~~~~~~  120 (232)
T TIGR03572       101 SINTAALENPDLIEEAARRF  120 (232)
T ss_pred             EEChhHhcCHHHHHHHHHHc
Confidence            99999999999999987654

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=98.64  E-value=6.6e-07  Score=89.34  Aligned_cols=167  Identities=10%  Similarity=0.133  Sum_probs=111.6

Q ss_pred             eEEEecCC--CHHH-------HHHHHHHHHHcCCCEEEeccC---CCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          48 IAFQVGDN--EPKK-------LAKSAKIIQKWGYDEINLNCG---CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        48 ~~~Ql~g~--~~~~-------~~~aa~~~~~~g~d~IdiN~g---CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +=+|++|.  +.++       -.+.++.+-++|+|-|-||-.   -|-..     +-+.-..+|+++.++.+..-+.+ +
T Consensus       315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~-----~~~~~~~~p~~i~~~~~~fg~q~-i  388 (538)
T PLN02617        315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEY-----IASGVKTGKTSIEQISRVYGNQA-V  388 (538)
T ss_pred             CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhh-----hccccccCHHHHHHHHHHcCCce-E
Confidence            44677774  2222       134455666789999999832   12111     11113467899999999885441 2


Q ss_pred             eeEEEEec----------------------------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--ccccc
Q psy2386         116 DITVKHRI----------------------------------GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--NAFLK  159 (311)
Q Consensus       116 pvsvKiR~----------------------------------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~~~~  159 (311)
                      -|++-.|-                                  ||...... ...++++.+++.|+..|.+..-  ..+.+
T Consensus       389 vvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~-~~~~~~~~~~~~Gageil~t~id~DGt~~  467 (538)
T PLN02617        389 VVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPI-GAYELAKAVEELGAGEILLNCIDCDGQGK  467 (538)
T ss_pred             EEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCC-CHHHHHHHHHhcCCCEEEEeecccccccc
Confidence            22222221                                  34332222 4689999999999999988754  33344


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      |           .|.++++++++.+ ++|||++||+.+++|+.+++..  +|+++.|.-+...-.-..++++.+..
T Consensus       468 G-----------~d~~l~~~v~~~~-~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~~  531 (538)
T PLN02617        468 G-----------FDIELVKLVSDAV-TIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLLE  531 (538)
T ss_pred             C-----------cCHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHHH
Confidence            4           4899999999998 8999999999999999999974  89999996665544555555555443

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=98.63  E-value=3.9e-06  Score=76.68  Aligned_cols=143  Identities=15%  Similarity=0.145  Sum_probs=104.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|++..=|-.+|.+.    ..+..+|+|+|=|..             +. + +++.+.++++..++ .+..+.|-+.. 
T Consensus       111 ~iPvl~kdfi~~~~qi----~~a~~~GAD~VlLi~-------------~~-l-~~~~l~~li~~a~~-lGl~~lvevh~-  169 (260)
T PRK00278        111 SLPVLRKDFIIDPYQI----YEARAAGADAILLIV-------------AA-L-DDEQLKELLDYAHS-LGLDVLVEVHD-  169 (260)
T ss_pred             CCCEEeeeecCCHHHH----HHHHHcCCCEEEEEe-------------cc-C-CHHHHHHHHHHHHH-cCCeEEEEeCC-
Confidence            4677766666666643    334578999998862             22 2 45788889988877 47777675553 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~  203 (311)
                               ..| ++++.+.|++.|-+|+|+.  +-+         ..|++...++.+.+|+ .|+|+-|||.|++|+.+
T Consensus       170 ---------~~E-~~~A~~~gadiIgin~rdl--~~~---------~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~  228 (260)
T PRK00278        170 ---------EEE-LERALKLGAPLIGINNRNL--KTF---------EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKR  228 (260)
T ss_pred             ---------HHH-HHHHHHcCCCEEEECCCCc--ccc---------cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHH
Confidence                     122 3556788999999999874  111         2478888888887764 69999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         204 HLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++. +|+|.||++++..+..-..+.+
T Consensus       229 ~~~~Gad~vlVGsaI~~~~dp~~~~~~  255 (260)
T PRK00278        229 LAKAGADAVLVGESLMRADDPGAALRE  255 (260)
T ss_pred             HHHcCCCEEEECHHHcCCCCHHHHHHH
Confidence            9987 9999999999988876555443

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.61  E-value=8.8e-07  Score=79.40  Aligned_cols=140  Identities=16%  Similarity=0.334  Sum_probs=95.2

Q ss_pred             eEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--
Q psy2386          48 IAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--  123 (311)
Q Consensus        48 ~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--  123 (311)
                      +-+|+.|  ++.++..+.    .+.|++.|=+              |++.. +|+++.++.+...+   +-|++-.|-  
T Consensus        74 ~pv~~gGGIrs~edv~~l----~~~G~~~viv--------------Gtaa~-~~~~l~~~~~~~g~---ivvslD~~~g~  131 (228)
T PRK04128         74 LKVQVGGGLRTYESIKDA----YEIGVENVII--------------GTKAF-DLEFLEKVTSEFEG---ITVSLDVKGGR  131 (228)
T ss_pred             CCEEEcCCCCCHHHHHHH----HHCCCCEEEE--------------Cchhc-CHHHHHHHHHHcCC---EEEEEEccCCe
Confidence            3355554  566666433    3568888765              45566 89999999887733   445555443  


Q ss_pred             ----cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         124 ----GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       124 ----g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                          ||...... ...++++.+++. +..+.++.  |..+.+|           .|     ++.+.++++|||++|||.|
T Consensus       132 v~~~gw~~~~~~-~~~~~~~~~~~~-~~~ii~t~i~~dGt~~G-----------~d-----~l~~~~~~~pviasGGv~~  193 (228)
T PRK04128        132 IAVKGWLEESSI-KVEDAYEMLKNY-VNRFIYTSIERDGTLTG-----------IE-----EIERFWGDEEFIYAGGVSS  193 (228)
T ss_pred             EecCCCeEcCCC-CHHHHHHHHHHH-hCEEEEEeccchhcccC-----------HH-----HHHHhcCCCCEEEECCCCC
Confidence                45432222 356888888888 88888874  3333344           23     3333334799999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      .+|+.++.+. ++||++|++++..-.-..++
T Consensus       194 ~~Dl~~l~~~g~~gvivg~al~~g~~~~~~~  224 (228)
T PRK04128        194 AEDVKKLAEIGFSGVIIGKALYEGRISLEEL  224 (228)
T ss_pred             HHHHHHHHHCCCCEEEEEhhhhcCCcCHHHH
Confidence            9999999876 99999999998765544443

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.60  E-value=2.6e-07  Score=82.81  Aligned_cols=100  Identities=15%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             EEEeccCCCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         119 VKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       119 vKiR~g~~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      |+..-||.+... +.+..++++.+.+. ++.+++-.+++..+|.         +.+++.++++.+.+ ++||++.|||+|
T Consensus        16 Vr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga~~g~---------~~n~~~i~~i~~~~-~~pv~~gGGIrs   84 (228)
T PRK04128         16 VRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGAFEGK---------PKNLDVVKNIIRET-GLKVQVGGGLRT   84 (228)
T ss_pred             EEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcchhcCC---------cchHHHHHHHHhhC-CCCEEEcCCCCC
Confidence            445556654321 11467899999998 9999997776533331         25899999999986 899999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+|++++++. +|+|.+|++++ ||.+++++.+.
T Consensus        85 ~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~  117 (228)
T PRK04128         85 YESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSE  117 (228)
T ss_pred             HHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHH
Confidence            9999999987 99999999999 99999988764

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.60  E-value=2.5e-07  Score=83.37  Aligned_cols=88  Identities=16%  Similarity=0.292  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-..+....+         ...+++.++++.+.+ ++|++.+|||+|.+|++.+++. ||+|+
T Consensus        34 ~~e~a~~~~~~G~~~l~i~dl~~~~~~---------~~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~v~  103 (241)
T PRK13585         34 PVEVAKRWVDAGAETLHLVDLDGAFEG---------ERKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDRVI  103 (241)
T ss_pred             HHHHHHHHHHcCCCEEEEEechhhhcC---------CcccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence            578999999999999866544321222         125789999999998 7999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|+.++.+|+++.++.+.+
T Consensus       104 iGs~~~~~~~~~~~i~~~~  122 (241)
T PRK13585        104 LGTAAVENPEIVRELSEEF  122 (241)
T ss_pred             EChHHhhChHHHHHHHHHh
Confidence            9999999999999987764

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=98.58  E-value=3.3e-06  Score=76.98  Aligned_cols=166  Identities=14%  Similarity=0.100  Sum_probs=101.2

Q ss_pred             CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHh-ccccc
Q psy2386          47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMR-DSVEI  115 (311)
Q Consensus        47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~-~~~~~  115 (311)
                      .++.=+...  |.+...++++.+.+.|+|.|||.  =|.+.-.-+|      .--+|-  -+.+.+.++++++| +..++
T Consensus        13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~   90 (258)
T PRK13111         13 ALIPYITAGDPDLETSLEIIKALVEAGADIIELG--IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTI   90 (258)
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence            355555544  66789999999999999999995  4543322221      001111  14567788888988 55678


Q ss_pred             eeEEEEeccCCC------------------------CCcHHHHHHHHHHHHHcCCCEEE-EecCcc--------------
Q psy2386         116 DITVKHRIGIDD------------------------INSYDFVRDFVGTVSSAGCRTFI-VHARNA--------------  156 (311)
Q Consensus       116 pvsvKiR~g~~~------------------------~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~--------------  156 (311)
                      |+.+  -..+..                        +-++++..++.+.+.+.|.+.|. +.+.+.              
T Consensus        91 p~vl--m~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gf  168 (258)
T PRK13111         91 PIVL--MTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGF  168 (258)
T ss_pred             CEEE--EecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCc
Confidence            8643  222221                        11123334444444444444444 222220              


Q ss_pred             c----cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         157 F----LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       157 ~----~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      .    ..|.+|... ..+....+.++++++.. ++||+..+||+|++++.+++..||||.||++++
T Consensus       169 IY~vs~~GvTG~~~-~~~~~~~~~i~~vk~~~-~~pv~vGfGI~~~e~v~~~~~~ADGviVGSaiv  232 (258)
T PRK13111        169 VYYVSRAGVTGARS-ADAADLAELVARLKAHT-DLPVAVGFGISTPEQAAAIAAVADGVIVGSALV  232 (258)
T ss_pred             EEEEeCCCCCCccc-CCCccHHHHHHHHHhcC-CCcEEEEcccCCHHHHHHHHHhCCEEEEcHHHH
Confidence            0    123344321 11222345899999977 899999999999999999997799999999986

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=98.58  E-value=2.6e-06  Score=81.08  Aligned_cols=157  Identities=15%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCccc-----------------------Ccc-
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFG-----------------------AIL-   95 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G-----------------------~~L-   95 (311)
                      +.|.-.||. -.|.+...+..++++++||..+=+..=+|..-.+    +.++-                       ..+ 
T Consensus       121 ~~~~wfQlY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  200 (367)
T PLN02493        121 PGIRFFQLYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLA  200 (367)
T ss_pred             CCCcEEEEeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCcccchhhhhhccccCCCcccchhHH
Confidence            457899998 4577888888899999999999887666644111    11100                       000 


Q ss_pred             -----cCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          96 -----MTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        96 -----l~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                           .-++.+-=+-++.+|+..+.||.||==.   .       .+-++.+.++|+|.|.|.+.-+....        ..
T Consensus       201 ~~~~~~~~~~~tW~di~wlr~~~~~PiivKgV~---~-------~~dA~~a~~~Gvd~I~VsnhGGrqld--------~~  262 (367)
T PLN02493        201 SYVAGQIDRTLSWKDVQWLQTITKLPILVKGVL---T-------GEDARIAIQAGAAGIIVSNHGARQLD--------YV  262 (367)
T ss_pred             HHHhhcCCCCCCHHHHHHHHhccCCCEEeecCC---C-------HHHHHHHHHcCCCEEEECCCCCCCCC--------Cc
Confidence                 0122222244678888889999999321   1       46678899999999999654321111        11


Q ss_pred             cCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         171 ILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       171 ~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.-.+.+.++++.+ .++||++.|||++..|+.+.+.. ||+|+|||.++.
T Consensus       263 ~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~  313 (367)
T PLN02493        263 PATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF  313 (367)
T ss_pred             hhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            23456777777764 25999999999999999999987 999999998864

>PRK00208 thiG thiazole synthase; Reviewed

Probab=98.58  E-value=2.7e-06  Score=76.05  Aligned_cols=142  Identities=12%  Similarity=0.181  Sum_probs=94.0

Q ss_pred             eEEEecC-CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGD-NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g-~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      +..+-.| .+.++-.+.|+++.+.+ -++|-|-       |..+  --.++.|+....+-.+.+.+. +.-|.-=+.   
T Consensus        65 ~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlE-------Vi~d--~~~llpd~~~tv~aa~~L~~~-Gf~vlpyc~---  131 (250)
T PRK00208         65 LLPNTAGCRTAEEAVRTARLAREALGTNWIKLE-------VIGD--DKTLLPDPIETLKAAEILVKE-GFVVLPYCT---  131 (250)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEE-------EecC--CCCCCcCHHHHHHHHHHHHHC-CCEEEEEeC---
Confidence            3344333 57888999999998853 4666654       1111  113555555444444443221 322221111   


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l  205 (311)
                        ++     ...++++++.|++.|..+|..-   | +|     .+..+++.++.+++.. ++|||..|||.+++|+.+++
T Consensus       132 --~d-----~~~ak~l~~~G~~~vmPlg~pI---G-sg-----~gi~~~~~i~~i~e~~-~vpVIveaGI~tpeda~~Am  194 (250)
T PRK00208        132 --DD-----PVLAKRLEEAGCAAVMPLGAPI---G-SG-----LGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDAAQAM  194 (250)
T ss_pred             --CC-----HHHHHHHHHcCCCEeCCCCcCC---C-CC-----CCCCCHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHH
Confidence              11     4789999999999996665542   1 11     1335788999999985 89999999999999999999


Q ss_pred             hh-cCEEEEehhhhh
Q psy2386         206 NY-IDGVMLGREAYK  219 (311)
Q Consensus       206 ~~-adgVmigRa~l~  219 (311)
                      +. ||||++|+|...
T Consensus       195 elGAdgVlV~SAItk  209 (250)
T PRK00208        195 ELGADAVLLNTAIAV  209 (250)
T ss_pred             HcCCCEEEEChHhhC
Confidence            87 999999999864

>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily

Probab=98.57  E-value=2.7e-06  Score=77.80  Aligned_cols=140  Identities=16%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-..+...+|+.+.+.++...+.||..+-+++|                .+++.-.++++++|+.+  +.++.+..
T Consensus        73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDa  136 (265)
T cd03315          73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDA  136 (265)
T ss_pred             CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            3456777777778999998888888899999999865                13466678888998877  46777777


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+++|-- +               .++.|++..+++++.. ++||.+.+.+.++.++
T Consensus       137 n~~~~~----~~a~~~~~~l~~~~i~~iEe-P---------------~~~~d~~~~~~l~~~~-~ipia~dE~~~~~~~~  195 (265)
T cd03315         137 NRGWTP----KQAIRALRALEDLGLDYVEQ-P---------------LPADDLEGRAALARAT-DTPIMADESAFTPHDA  195 (265)
T ss_pred             CCCcCH----HHHHHHHHHHHhcCCCEEEC-C---------------CCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence            777764    35789999999999988832 0               1224789999999988 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhC
Q psy2386         202 DLHLNY--IDGVMLGREAYKN  220 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~  220 (311)
                      .++++.  +|.|++==.-.+.
T Consensus       196 ~~~i~~~~~d~v~~k~~~~GG  216 (265)
T cd03315         196 FRELALGAADAVNIKTAKTGG  216 (265)
T ss_pred             HHHHHhCCCCEEEEecccccC
Confidence            999875  9999885443333

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=98.56  E-value=2.7e-06  Score=74.68  Aligned_cols=156  Identities=13%  Similarity=0.160  Sum_probs=99.1

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEeccC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRIGI  125 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~g~  125 (311)
                      .++|...|++.+.+.++.+.+.|+|.|++- +-+|.-.            +...-.++++++++..+.|+.  ++++-  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~------------~~~~~~~~v~~i~~~~~~~v~v~lm~~~--   67 (210)
T TIGR01163         2 APSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVP------------NLTFGPPVLEALRKYTDLPIDVHLMVEN--   67 (210)
T ss_pred             cchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC------------CcccCHHHHHHHHhcCCCcEEEEeeeCC--
Confidence            467788999999999999999999999996 3333321            222334566666665566643  44441  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------cc--ccC------CCC---------------------cCCC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FL--KKL------NPK---------------------QNRK  168 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~--~G~------~g~---------------------~~~~  168 (311)
                              ..++++.+.++|++.|++|+...        ..  .|.      +..                     ....
T Consensus        68 --------~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~  139 (210)
T TIGR01163        68 --------PDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGF  139 (210)
T ss_pred             --------HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCC
Confidence                    23567778889999988886420        00  000      000                     0000


Q ss_pred             C-CcCcH---HHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         169 I-PILKY---NFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       169 ~-~~~~~---~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      . ...+|   +.+.++++..    +++|+.+.|||+ ++.+.++++. +|+|.+||+++..+.....+
T Consensus       140 tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~gad~iivgsai~~~~d~~~~~  206 (210)
T TIGR01163       140 GGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAGADILVAGSAIFGADDYKEVI  206 (210)
T ss_pred             CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence            1 12234   3444455433    137999999996 7999998876 99999999998877644443

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily

Probab=98.53  E-value=1.7e-06  Score=82.45  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=112.0

Q ss_pred             CCCCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeE
Q psy2386          43 AEEHPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDIT  118 (311)
Q Consensus        43 ~~~~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvs  118 (311)
                      ....|+-..+.+.  +++++.++|+.+.+.||+.|.|.+|.+...          .++++...++++++|+.+  +.++.
T Consensus       124 ~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~----------~~~~~~d~~~v~~ir~~~g~~~~l~  193 (357)
T cd03316         124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSG----------GEDLREDLARVRAVREAVGPDVDLM  193 (357)
T ss_pred             CCceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcc----------hHHHHHHHHHHHHHHHhhCCCCEEE
Confidence            3445666666555  599999999999999999999998754221          167888899999999987  56788


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                      +...-+|+.    ++..++++.+++.|+.++--                ..++.+++..+++++.. ++||++.+.+.++
T Consensus       194 vDaN~~~~~----~~a~~~~~~l~~~~i~~iEq----------------P~~~~~~~~~~~l~~~~-~ipi~~dE~~~~~  252 (357)
T cd03316         194 VDANGRWDL----AEAIRLARALEEYDLFWFEE----------------PVPPDDLEGLARLRQAT-SVPIAAGENLYTR  252 (357)
T ss_pred             EECCCCCCH----HHHHHHHHHhCccCCCeEcC----------------CCCccCHHHHHHHHHhC-CCCEEeccccccH
Confidence            877767753    35789999999988877631                01224788899999987 7999999999999


Q ss_pred             HHHHHHHhh--cCEEEEehhh
Q psy2386         199 KEIDLHLNY--IDGVMLGREA  217 (311)
Q Consensus       199 ~da~~~l~~--adgVmigRa~  217 (311)
                      +|+.++++.  +|.|.+--.-
T Consensus       253 ~~~~~~i~~~~~d~v~~k~~~  273 (357)
T cd03316         253 WEFRDLLEAGAVDIIQPDVTK  273 (357)
T ss_pred             HHHHHHHHhCCCCEEecCccc
Confidence            999999975  9999875333

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=98.53  E-value=3e-06  Score=80.09  Aligned_cols=113  Identities=15%  Similarity=0.278  Sum_probs=75.0

Q ss_pred             CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2386          72 YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV  151 (311)
Q Consensus        72 ~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv  151 (311)
                      ++.|-..+|.|..                   ++++.+++. ++.|...+..           .+.++.+.+.|+|.|++
T Consensus       114 ~~~v~~~~G~p~~-------------------~~i~~l~~~-gi~v~~~v~s-----------~~~A~~a~~~G~D~iv~  162 (330)
T PF03060_consen  114 PDVVSFGFGLPPP-------------------EVIERLHAA-GIKVIPQVTS-----------VREARKAAKAGADAIVA  162 (330)
T ss_dssp             -SEEEEESSSC-H-------------------HHHHHHHHT-T-EEEEEESS-----------HHHHHHHHHTT-SEEEE
T ss_pred             eEEEEeecccchH-------------------HHHHHHHHc-CCccccccCC-----------HHHHHHhhhcCCCEEEE
Confidence            3477777776642                   345566553 7777776542           46688899999999999


Q ss_pred             ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         152 HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       152 h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      -|..  -+|..|.   ... --+.++.++++.+ ++|||+.|||.+.+++..++.. ||||++|+.++.-+.
T Consensus       163 qG~e--AGGH~g~---~~~-~~~~L~~~v~~~~-~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~E  227 (330)
T PF03060_consen  163 QGPE--AGGHRGF---EVG-STFSLLPQVRDAV-DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEE  227 (330)
T ss_dssp             E-TT--SSEE------SSG--HHHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTT
T ss_pred             eccc--cCCCCCc---ccc-ceeeHHHHHhhhc-CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEeccc
Confidence            8775  3554441   000 2467888999998 7999999999999999999987 999999999976554

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.53  E-value=3.1e-06  Score=81.45  Aligned_cols=136  Identities=13%  Similarity=0.226  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      |.+++.+.++-. +.++|+|.|=|-..-+               +++.+.++++.+++.. +.+|.++-=.         
T Consensus       149 g~~~~~~~~v~~-lv~aGvDvI~iD~a~g---------------~~~~~~~~v~~ik~~~p~~~vi~g~V~---------  203 (404)
T PRK06843        149 SIDIDTIERVEE-LVKAHVDILVIDSAHG---------------HSTRIIELVKKIKTKYPNLDLIAGNIV---------  203 (404)
T ss_pred             eCCHHHHHHHHH-HHhcCCCEEEEECCCC---------------CChhHHHHHHHHHhhCCCCcEEEEecC---------
Confidence            556776666555 4457999988854432               2466788999999876 6777664221         


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCC-CcCCCCCcCcHHHH---HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNP-KQNRKIPILKYNFV---YNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g-~~~~~~~~~~~~~i---~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                       +.+-++.+.++|+|+|.+ |-+.  .+.++ ......+..++..+   .++.+.. ++|||+-|||+++.|+.+.+.. 
T Consensus       204 -T~e~a~~l~~aGaD~I~v-G~g~--Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~-~vpVIAdGGI~~~~Di~KALalG  278 (404)
T PRK06843        204 -TKEAALDLISVGADCLKV-GIGP--GSICTTRIVAGVGVPQITAICDVYEVCKNT-NICIIADGGIRFSGDVVKAIAAG  278 (404)
T ss_pred             -CHHHHHHHHHcCCCEEEE-CCCC--CcCCcceeecCCCCChHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcC
Confidence             256788999999999986 3211  00000 00001122345544   5555555 6999999999999999999987 


Q ss_pred             cCEEEEehhhhh
Q psy2386         208 IDGVMLGREAYK  219 (311)
Q Consensus       208 adgVmigRa~l~  219 (311)
                      ||+||+|+.+.+
T Consensus       279 A~aVmvGs~~ag  290 (404)
T PRK06843        279 ADSVMIGNLFAG  290 (404)
T ss_pred             CCEEEEcceeee
Confidence            999999999976

>PRK07695 transcriptional regulator TenI; Provisional

Probab=98.53  E-value=1.2e-05  Score=70.53  Aligned_cols=151  Identities=12%  Similarity=0.150  Sum_probs=89.3

Q ss_pred             CCeEEEec--CCCHHHHHHHHHHHHHcCCC--EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386          46 HPIAFQVG--DNEPKKLAKSAKIIQKWGYD--EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK  120 (311)
Q Consensus        46 ~p~~~Ql~--g~~~~~~~~aa~~~~~~g~d--~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK  120 (311)
                      ..-.+||-  +.+.+++.+.++.+.+.|..  .+=||--+..... -+..|--|-.+ +.   -++.+++.. +..|.+.
T Consensus        27 g~~~iqlR~k~~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~-~~~~gvHl~~~-~~---~~~~~r~~~~~~~ig~s  101 (201)
T PRK07695         27 EVDYIHIREREKSAKELYEGVESLLKKGVPASKLIINDRVDIALL-LNIHRVQLGYR-SF---SVRSVREKFPYLHVGYS  101 (201)
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHH-cCCCEEEeCcc-cC---CHHHHHHhCCCCEEEEe
Confidence            45678888  45677888878777776543  3445522111000 00001111111 10   022333322 2334442


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      +.       +    .+.+..+++.|+|++.++.-...   .+ ++  ..++.+|+.++++++.+ ++||++.||| ++++
T Consensus       102 ~~-------s----~e~a~~a~~~Gadyi~~g~v~~t---~~-k~--~~~~~g~~~l~~~~~~~-~ipvia~GGI-~~~~  162 (201)
T PRK07695        102 VH-------S----LEEAIQAEKNGADYVVYGHVFPT---DC-KK--GVPARGLEELSDIARAL-SIPVIAIGGI-TPEN  162 (201)
T ss_pred             CC-------C----HHHHHHHHHcCCCEEEECCCCCC---CC-CC--CCCCCCHHHHHHHHHhC-CCCEEEEcCC-CHHH
Confidence            21       1    34467788999999976432210   01 00  12235789999999987 7999999999 9999


Q ss_pred             HHHHHhh-cCEEEEehhhhhC
Q psy2386         201 IDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~  220 (311)
                      +.++++. +|+|++|++++..
T Consensus       163 ~~~~~~~Ga~gvav~s~i~~~  183 (201)
T PRK07695        163 TRDVLAAGVSGIAVMSGIFSS  183 (201)
T ss_pred             HHHHHHcCCCEEEEEHHHhcC
Confidence            9999987 9999999999753

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.51  E-value=4.8e-06  Score=82.76  Aligned_cols=137  Identities=19%  Similarity=0.247  Sum_probs=89.9

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCc
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINS  130 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~  130 (311)
                      ..|..++.+.++. .+.++|+|.|.|++.-               -+...+.+.++.+++.. ++||.+    |.-.   
T Consensus       235 avg~~~~~~~~~~-~l~~ag~d~i~id~a~---------------G~s~~~~~~i~~ik~~~~~~~v~a----G~V~---  291 (495)
T PTZ00314        235 AISTRPEDIERAA-ALIEAGVDVLVVDSSQ---------------GNSIYQIDMIKKLKSNYPHVDIIA----GNVV---  291 (495)
T ss_pred             EECCCHHHHHHHH-HHHHCCCCEEEEecCC---------------CCchHHHHHHHHHHhhCCCceEEE----CCcC---
Confidence            4467787755554 4666899999999641               12233467788888875 566666    3111   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHH---HHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNF---VYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~---i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                         ..+-++.+.++|+|+|.+-   |.++......     ..+...+..   +.++.+.. ++|||+.|||.++.|+.+.
T Consensus       292 ---t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~-----~~g~p~~~ai~~~~~~~~~~-~v~vIadGGi~~~~di~kA  362 (495)
T PTZ00314        292 ---TADQAKNLIDAGADGLRIGMGSGSICITQEVC-----AVGRPQASAVYHVARYARER-GVPCIADGGIKNSGDICKA  362 (495)
T ss_pred             ---CHHHHHHHHHcCCCEEEECCcCCcccccchhc-----cCCCChHHHHHHHHHHHhhc-CCeEEecCCCCCHHHHHHH
Confidence               2466888999999999862   1111110000     011123344   33444445 7999999999999999999


Q ss_pred             Hhh-cCEEEEehhhhhC
Q psy2386         205 LNY-IDGVMLGREAYKN  220 (311)
Q Consensus       205 l~~-adgVmigRa~l~~  220 (311)
                      ++. ||+||+|+.+.+-
T Consensus       363 la~GA~~Vm~G~~~a~~  379 (495)
T PTZ00314        363 LALGADCVMLGSLLAGT  379 (495)
T ss_pred             HHcCCCEEEECchhccc
Confidence            987 9999999997653

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=98.51  E-value=6e-06  Score=71.48  Aligned_cols=139  Identities=19%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDF  133 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~  133 (311)
                      .+++.+...|+-+.+.|+-+|-+|           +           + +=++++++.+++|+.==+.-..++.+. .-.
T Consensus        30 ~~~~iv~~mA~Aa~~gGAvgiR~~-----------g-----------v-~dIkai~~~v~vPIIGIiKrd~~~s~v~ITp   86 (229)
T COG3010          30 DSPEIVAAMALAAEQGGAVGIRIE-----------G-----------V-EDIKAIRAVVDVPIIGIIKRDYPDSPVRITP   86 (229)
T ss_pred             cchhHHHHHHHHHHhCCcceEeec-----------c-----------h-hhHHHHHhhCCCCeEEEEecCCCCCCceecc
Confidence            346778888888889999999998           1           1 114567777788874322222222211 001


Q ss_pred             HHHHHHHHHHcCCCEEEEecCcc--------------------------------------------ccccCCCCcCCCC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKKLNPKQNRKI  169 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~--------------------------------------------~~~G~~g~~~~~~  169 (311)
                      +.+=++.|.++|++.|.+.+..+                                            ++.||.+... ..
T Consensus        87 tlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~-~~  165 (229)
T COG3010          87 TLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTE-KP  165 (229)
T ss_pred             cHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEecccccccCCCC-CC
Confidence            23445666677777666432100                                            1456665222 22


Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ...|+.+++++.+ . +.+||+-|.+.||+++.+.++. |++|.||.++-+
T Consensus       166 ~~pDf~lvk~l~~-~-~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR  214 (229)
T COG3010         166 TEPDFQLVKQLSD-A-GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR  214 (229)
T ss_pred             CCCcHHHHHHHHh-C-CCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC
Confidence            2358999999998 3 7999999999999999999987 999999977643

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.47  E-value=7.4e-06  Score=80.61  Aligned_cols=141  Identities=18%  Similarity=0.245  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      +-.++.+.++.. +.++|+|.|.|++.-+               +.+.+.+.++.+++.. ++||.++-=.         
T Consensus       220 ~~~~~~~~r~~~-L~~aG~d~I~vd~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~G~v~---------  274 (450)
T TIGR01302       220 GTREFDKERAEA-LVKAGVDVIVIDSSHG---------------HSIYVIDSIKEIKKTYPDLDIIAGNVA---------  274 (450)
T ss_pred             cCchhHHHHHHH-HHHhCCCEEEEECCCC---------------cHhHHHHHHHHHHHhCCCCCEEEEeCC---------
Confidence            556777777775 4457999999985442               2245778888888874 7888884221         


Q ss_pred             HHHHHHHHHHHcCCCEEEEe--cC-ccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVH--AR-NAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh--~R-t~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                       ..+-++.+.++|+|+|.|.  +. +.......     ..+...+..+.+++   +.. ++|||+.|||+++.|+.+.++
T Consensus       275 -t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~-----~~g~p~~~~i~~~~~~~~~~-~vpviadGGi~~~~di~kAla  347 (450)
T TIGR01302       275 -TAEQAKALIDAGADGLRVGIGPGSICTTRIVA-----GVGVPQITAVYDVAEYAAQS-GIPVIADGGIRYSGDIVKALA  347 (450)
T ss_pred             -CHHHHHHHHHhCCCEEEECCCCCcCCccceec-----CCCccHHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHH
Confidence             2466888999999999764  11 11011000     01112345555554   344 799999999999999999998


Q ss_pred             h-cCEEEEehhhhhCCcchHH
Q psy2386         207 Y-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~i~~~  226 (311)
                      . ||.||+|+.+.+-.+...+
T Consensus       348 ~GA~~V~~G~~~a~~~e~pg~  368 (450)
T TIGR01302       348 AGADAVMLGSLLAGTTESPGE  368 (450)
T ss_pred             cCCCEEEECchhhcCCcCCCc
Confidence            7 9999999998776665544

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=98.47  E-value=4.6e-06  Score=74.36  Aligned_cols=137  Identities=15%  Similarity=0.055  Sum_probs=91.0

Q ss_pred             CCCH-HHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          54 DNEP-KKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        54 g~~~-~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                      |.++ +.=...++.+.+.|++.||+  |.|+|..            .+.+.+.+-++++++.+ .|+.+|+=+-...- +
T Consensus        69 G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~------------g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L-~  134 (221)
T PRK00507         69 GANTTAVKAFEAKDAIANGADEIDMVINIGALKS------------GDWDAVEADIRAVVEAA-GGAVLKVIIETCLL-T  134 (221)
T ss_pred             CCChHHHHHHHHHHHHHcCCceEeeeccHHHhcC------------CCHHHHHHHHHHHHHhc-CCceEEEEeecCcC-C
Confidence            4444 33334455666789999996  5555543            35777777788888765 46677873321111 1


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      .++....++.+.++|+|+|.-...      +++      +.+..+.++.+++..+ +++|.++|||+|.+|+.++++. |
T Consensus       135 ~e~i~~a~~~~~~agadfIKTsTG------~~~------~gat~~~v~~m~~~~~~~~~IKasGGIrt~~~a~~~i~aGA  202 (221)
T PRK00507        135 DEEKVKACEIAKEAGADFVKTSTG------FST------GGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGA  202 (221)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCC------CCC------CCCCHHHHHHHHHHhCCCceEEeeCCcCCHHHHHHHHHcCc
Confidence            124678888899999997754322      210      1256777777777653 5999999999999999999976 8


Q ss_pred             CEEEEehh
Q psy2386         209 DGVMLGRE  216 (311)
Q Consensus       209 dgVmigRa  216 (311)
                      +-+-..++
T Consensus       203 ~riGtS~~  210 (221)
T PRK00507        203 TRLGTSAG  210 (221)
T ss_pred             ceEccCcH
Confidence            87665544

>PLN02591 tryptophan synthase

Probab=98.46  E-value=6.2e-06  Score=74.82  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=96.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      |.+...+.++.+.+.|+|.|||.  =|+..-.-+|      .--+|-  -+.+.+.++++.+|+..++|+.+  -..++.
T Consensus        14 ~~e~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il--m~Y~N~   89 (250)
T PLN02591         14 DLDTTAEALRLLDACGADVIELG--VPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL--FTYYNP   89 (250)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEC--CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE--EecccH
Confidence            67889999999999999999995  4543322221      111111  24567888999998777888642  222221


Q ss_pred             ------------------------CCcHHHHHHHHHHHHHcCCCEEEEe-cCcc---------c---------cccCCCC
Q psy2386         128 ------------------------INSYDFVRDFVGTVSSAGCRTFIVH-ARNA---------F---------LKKLNPK  164 (311)
Q Consensus       128 ------------------------~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~---------~---------~~G~~g~  164 (311)
                                              +-++++..++...+.+.|++.|.+- +-|.         .         ..|.+|.
T Consensus        90 i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~  169 (250)
T PLN02591         90 ILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA  169 (250)
T ss_pred             HHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC
Confidence                                    1112233344444444444444332 1111         0         1233433


Q ss_pred             cCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         165 QNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       165 ~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      ... . +.+ -+.++++++.. ++||+..-||+|++++.++++. ||||.||++++
T Consensus       170 ~~~-~-~~~~~~~i~~vk~~~-~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalV  222 (250)
T PLN02591        170 RAS-V-SGRVESLLQELKEVT-DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMV  222 (250)
T ss_pred             CcC-C-chhHHHHHHHHHhcC-CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHH
Confidence            111 1 223 35588899875 8999999999999999999988 99999999986

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.44  E-value=5.7e-06  Score=75.67  Aligned_cols=166  Identities=17%  Similarity=0.210  Sum_probs=105.6

Q ss_pred             CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc------ccCccc--CChHHHHHHHHHHhccccce
Q psy2386          47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF------FGAILM--TKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~------~G~~Ll--~~~~~~~~iv~~v~~~~~~p  116 (311)
                      .++.=|...  |.+...+.++.+.+.|+|.|||.  =|...-..+|      .--+|-  -+.+.+.++++++|+..++|
T Consensus        16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElG--iPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p   93 (263)
T CHL00200         16 ALIPFITAGDPDIVITKKALKILDKKGADIIELG--IPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP   93 (263)
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC--CCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence            466555544  56788999998999999999995  4544322221      111111  24567888999998877888


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc--------------
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA--------------  156 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~--------------  156 (311)
                      +.  +-..++.--.+ -..+|++.+.++|+|.+++|.                          -|.              
T Consensus        94 ~v--lm~Y~N~i~~~-G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gF  170 (263)
T CHL00200         94 IV--IFTYYNPVLHY-GINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGC  170 (263)
T ss_pred             EE--EEecccHHHHh-CHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCc
Confidence            63  23222210000 124566677777777776542                          110              


Q ss_pred             ----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         157 ----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       157 ----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                          ...|.+|... ..+.---+.++++++.. ++||..-+||+|++++.++.+. ||||.+|++++.
T Consensus       171 IY~vS~~GvTG~~~-~~~~~~~~~i~~ir~~t-~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~  236 (263)
T CHL00200        171 IYLVSTTGVTGLKT-ELDKKLKKLIETIKKMT-NKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQ  236 (263)
T ss_pred             EEEEcCCCCCCCCc-cccHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                0124444321 11111236788888876 8999999999999999999987 999999999965

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.44  E-value=1.5e-06  Score=78.57  Aligned_cols=88  Identities=14%  Similarity=0.127  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+.+.|++.|++-.-++. .|         ...+.+.|+++.+.+ ++||.+.|||+|.+|+++++.. |+.|
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~-~g---------~~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~Ga~kv  101 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAA-FG---------RGSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATGCARV  101 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEecccc-CC---------CCccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCCCCEE
Confidence            4578999999999999998765531 12         125789999999998 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|.+++.||.++.++.+.+
T Consensus       102 viGs~~l~~p~l~~~i~~~~  121 (241)
T PRK14024        102 NIGTAALENPEWCARVIAEH  121 (241)
T ss_pred             EECchHhCCHHHHHHHHHHh
Confidence            99999999999999987654

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=98.43  E-value=2.3e-06  Score=76.50  Aligned_cols=89  Identities=16%  Similarity=0.282  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.++|....+...|         .+.+++.++++++.+ ++|+...|||++.+|++++++. ||.|
T Consensus        29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g---------~~~~~~~i~~i~~~~-~~pi~~ggGI~~~ed~~~~~~~Ga~~v   98 (230)
T TIGR00007        29 DPVEAAKKWEEEGAERIHVVDLDGAKEG---------GPVNLPVIKKIVRET-GVPVQVGGGIRSLEDVEKLLDLGVDRV   98 (230)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCccccC---------CCCcHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            3679999999999999999766543222         125889999999988 7999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|..++.+|..+.++.+.+
T Consensus        99 vlgs~~l~d~~~~~~~~~~~  118 (230)
T TIGR00007        99 IIGTAAVENPDLVKELLKEY  118 (230)
T ss_pred             EEChHHhhCHHHHHHHHHHh
Confidence            99999999999998887765

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=98.41  E-value=1.2e-05  Score=72.94  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=99.1

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE--EE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV--KH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv--Ki  121 (311)
                      -..|+++|+.-+|+..-.   .++...|+|+|-+|.-|=.. ++..|   -+.-+...+.+.-+.+..  ++.+..  +.
T Consensus        78 ~~~p~GvnvL~nd~~aal---~iA~a~ga~FIRv~~~~g~~-~~d~G---~~~~~a~e~~r~r~~l~~--~v~i~adV~~  148 (257)
T TIGR00259        78 VSIPLGINVLRNDAVAAL---AIAMAVGAKFIRVNVLTGVY-ASDQG---IIEGNAGELIRYKKLLGS--EVKILADIVV  148 (257)
T ss_pred             cCCCeeeeeecCCCHHHH---HHHHHhCCCEEEEccEeeeE-ecccc---cccccHHHHHHHHHHcCC--CcEEEeceee
Confidence            346899999998886322   34446799999999655433 22221   222333444444444442  343332  22


Q ss_pred             eccCC-CCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         122 RIGID-DINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~-~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      ..+.. .+.   .+.+.++.....| +|+|+|+|...   |         .+.||+.++++++..+++||+.+|||+ ++
T Consensus       149 kh~~~l~~~---~~~e~a~~~~~~~~aDavivtG~~T---G---------~~~d~~~l~~vr~~~~~~PvllggGvt-~e  212 (257)
T TIGR00259       149 KHAVHLGNR---DLESIALDTVERGLADAVILSGKTT---G---------TEVDLELLKLAKETVKDTPVLAGSGVN-LE  212 (257)
T ss_pred             cccCcCCCC---CHHHHHHHHHHhcCCCEEEECcCCC---C---------CCCCHHHHHHHHhccCCCeEEEECCCC-HH
Confidence            22221 122   2467777777666 99999998752   2         136999999999877679999999996 78


Q ss_pred             HHHHHHhhcCEEEEehhhh
Q psy2386         200 EIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       200 da~~~l~~adgVmigRa~l  218 (311)
                      .+.++++.||||.+|+++-
T Consensus       213 Nv~e~l~~adGviVgS~~K  231 (257)
T TIGR00259       213 NVEELLSIADGVIVATTIK  231 (257)
T ss_pred             HHHHHHhhCCEEEECCCcc
Confidence            8888888899999999975

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.39  E-value=1.6e-06  Score=78.00  Aligned_cols=88  Identities=13%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             HHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         134 VRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ..+.++.+.+ .|++.++|-.-++...|         .+.+++.|+++.+.+ ++||...|||+|.+|++++++. |+-|
T Consensus        33 p~~~a~~~~~~~Ga~~l~ivDLd~a~~~---------~~~n~~~I~~i~~~~-~~pi~vGGGIrs~e~v~~~l~~Ga~kv  102 (234)
T PRK13587         33 AEESIAYYSQFECVNRIHIVDLIGAKAQ---------HAREFDYIKSLRRLT-TKDIEVGGGIRTKSQIMDYFAAGINYC  102 (234)
T ss_pred             HHHHHHHHHhccCCCEEEEEECcccccC---------CcchHHHHHHHHhhc-CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence            4689999999 79999998765542222         235899999999987 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|+.++.||.+++++.+.+
T Consensus       103 vigt~a~~~~~~l~~~~~~f  122 (234)
T PRK13587        103 IVGTKGIQDTDWLKEMAHTF  122 (234)
T ss_pred             EECchHhcCHHHHHHHHHHc
Confidence            99999999999999998764

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.37  E-value=1.3e-05  Score=73.24  Aligned_cols=150  Identities=11%  Similarity=0.152  Sum_probs=97.1

Q ss_pred             CCCCeEEEecCCCHH-------HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---c
Q psy2386          44 EEHPIAFQVGDNEPK-------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---V  113 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~-------~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~  113 (311)
                      .+.++++.+.+..|.       .+...++.+.+.|+++|++-.-          .|+  ..+.+.+ +.++++++.   .
T Consensus        69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~----------~g~--~~~~~~~-~~~~~i~~~~~~~  135 (258)
T TIGR01949        69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVN----------VGS--DTEWEQI-RDLGMIAEICDDW  135 (258)
T ss_pred             CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEe----------cCC--chHHHHH-HHHHHHHHHHHHc
Confidence            356788888544332       3445566777889999988532          111  1122333 444555443   3


Q ss_pred             cceeEEEEe-----ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386         114 EIDITVKHR-----IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE  188 (311)
Q Consensus       114 ~~pvsvKiR-----~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip  188 (311)
                      ++|+.|..-     ++..   +.+...+.++...+.|+|+|.+.        +.         .+.+.++++.+.. .+|
T Consensus       136 g~~liv~~~~~Gvh~~~~---~~~~~~~~~~~a~~~GADyikt~--------~~---------~~~~~l~~~~~~~-~iP  194 (258)
T TIGR01949       136 GVPLLAMMYPRGPHIDDR---DPELVAHAARLGAELGADIVKTP--------YT---------GDIDSFRDVVKGC-PAP  194 (258)
T ss_pred             CCCEEEEEeccCcccccc---cHHHHHHHHHHHHHHCCCEEecc--------CC---------CCHHHHHHHHHhC-CCc
Confidence            788777432     2221   12234444678889999999753        10         2678899998877 699


Q ss_pred             EEEecCCC--CHHHHHHHH----hh-cCEEEEehhhhhCCcchHHh
Q psy2386         189 IIINGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       189 vi~nGgI~--s~~da~~~l----~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      |++.|||+  |.+++.+.+    +. ++|+.+||+++..+.....+
T Consensus       195 Vva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~  240 (258)
T TIGR01949       195 VVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGIT  240 (258)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHH
Confidence            99999999  777776666    44 99999999999877744433

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=98.37  E-value=1.9e-05  Score=71.60  Aligned_cols=152  Identities=17%  Similarity=0.238  Sum_probs=96.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE---
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH---  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi---  121 (311)
                      .-|+++|+.-+|+..-.   .++...|+|+|-+|.-|=..- ...  | .+..+...+.+.-+.+..  ++.+...+   
T Consensus        80 ~~p~GVnvL~nd~~aal---aiA~A~ga~FIRv~~~~g~~~-~d~--G-~~~~~a~e~~r~R~~l~a--~v~ilaDV~~k  150 (254)
T PF03437_consen   80 SVPVGVNVLRNDPKAAL---AIAAATGADFIRVNVFVGAYV-TDE--G-IIEGCAGELLRYRKRLGA--DVKILADVHVK  150 (254)
T ss_pred             CCCEEeeeecCCCHHHH---HHHHHhCCCEEEecCEEceec-ccC--c-cccccHHHHHHHHHHcCC--CeEEEeeechh
Confidence            57999999998876422   334467899999996654332 111  1 122222222322222222  23333222   


Q ss_pred             -eccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         122 -RIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       122 -R~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                       ...... .+   +.+.++.. +..++|+|+|+|...   |         .+.+.+.++++++.++ +||+.++|++ ++
T Consensus       151 h~~~l~~-~~---~~~~~~~a~~~~~aDaviVtG~~T---G---------~~~~~~~l~~vr~~~~-~PVlvGSGvt-~~  212 (254)
T PF03437_consen  151 HSSPLAT-RD---LEEAAKDAVERGGADAVIVTGKAT---G---------EPPDPEKLKRVREAVP-VPVLVGSGVT-PE  212 (254)
T ss_pred             hcccCCC-CC---HHHHHHHHHHhcCCCEEEECCccc---C---------CCCCHHHHHHHHhcCC-CCEEEecCCC-HH
Confidence             222222 12   33445444 778999999998752   1         1368899999999995 9999999986 68


Q ss_pred             HHHHHHhhcCEEEEehhhhhCCcc
Q psy2386         200 EIDLHLNYIDGVMLGREAYKNPFL  223 (311)
Q Consensus       200 da~~~l~~adgVmigRa~l~~P~i  223 (311)
                      .+.+++..|||+.||+.+-.|-.+
T Consensus       213 Ni~~~l~~ADG~IVGS~~K~~G~~  236 (254)
T PF03437_consen  213 NIAEYLSYADGAIVGSYFKKDGKW  236 (254)
T ss_pred             HHHHHHHhCCEEEEeeeeeeCCEe
Confidence            999999889999999987655544

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=98.37  E-value=2.3e-06  Score=78.15  Aligned_cols=89  Identities=18%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+.+.|++.|++..-.+.-.+         ...+++.++++.+.+ ++||++.|||+|.+|+.+++.. +++|
T Consensus        31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~---------~~~n~~~i~~i~~~~-~~pv~~gGGi~s~~d~~~l~~~G~~~v  100 (258)
T PRK01033         31 DPINAVRIFNEKEVDELIVLDIDASKRG---------SEPNYELIENLASEC-FMPLCYGGGIKTLEQAKKIFSLGVEKV  100 (258)
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCcCC---------CcccHHHHHHHHHhC-CCCEEECCCCCCHHHHHHHHHCCCCEE
Confidence            4689999999999999998754331111         125899999999986 8999999999999999999976 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|++++.+|.++.++.+.+
T Consensus       101 vigs~~~~~~~~~~~~~~~~  120 (258)
T PRK01033        101 SINTAALEDPDLITEAAERF  120 (258)
T ss_pred             EEChHHhcCHHHHHHHHHHh
Confidence            99999999999999987654

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=98.37  E-value=2e-05  Score=69.07  Aligned_cols=160  Identities=18%  Similarity=0.231  Sum_probs=97.6

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ++.+.|..-|+..+.++++.+.+.|++.|.+.+ ..|..            .+...-.++++.+++.++.|+.|.+-.. 
T Consensus         1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~------------~~~~~~~~~~~~i~~~~~~~~~v~l~~~-   67 (211)
T cd00429           1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFV------------PNLTFGPPVVKALRKHTDLPLDVHLMVE-   67 (211)
T ss_pred             CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCC------------CccccCHHHHHHHHhhCCCcEEEEeeeC-
Confidence            356788899999999999999999999999942 11111            0111112455555554445554443331 


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------ccc--c------------------------C---CCCcCC-
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FLK--K------------------------L---NPKQNR-  167 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~~--G------------------------~---~g~~~~-  167 (311)
                       +      ..++++.+.++|+|.+++|+...        ...  |                        |   .+.... 
T Consensus        68 -d------~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~  140 (211)
T cd00429          68 -N------PERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGF  140 (211)
T ss_pred             -C------HHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence             1      13456667788888888875420        000  0                        0   000000 


Q ss_pred             CCCcCcH---HHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         168 KIPILKY---NFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       168 ~~~~~~~---~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      .....+|   +.+.++++..+    ++|+++-|||+. +++.++++. +|+|.+||+++..+.....+
T Consensus       141 tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~-env~~~~~~gad~iivgsai~~~~~~~~~~  207 (211)
T cd00429         141 GGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINL-ETIPLLAEAGADVLVAGSALFGSDDYAEAI  207 (211)
T ss_pred             CCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCCCCHHHHH
Confidence            0112333   34555555442    489999999996 999999976 99999999998877654443

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.37  E-value=1.9e-05  Score=78.60  Aligned_cols=137  Identities=15%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE-EeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK-HRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK-iR~g~~~~~~~  131 (311)
                      |..++.+.++.. +.++|+|.|-|.+  +.             -+...+-+.++.+|+.. +.+|.++ +-         
T Consensus       244 g~~~~~~~r~~~-l~~ag~d~i~iD~--~~-------------g~~~~~~~~i~~ik~~~p~~~vi~g~v~---------  298 (505)
T PLN02274        244 GTRESDKERLEH-LVKAGVDVVVLDS--SQ-------------GDSIYQLEMIKYIKKTYPELDVIGGNVV---------  298 (505)
T ss_pred             cCCccHHHHHHH-HHHcCCCEEEEeC--CC-------------CCcHHHHHHHHHHHHhCCCCcEEEecCC---------
Confidence            556777766665 4457999988865  21             12345568888998876 5677664 21         


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe--cCc-cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVH--ARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh--~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                        +.+-++.+.++|+|.|.+.  +.. ...+...+.  .......+..+.++++.. ++|||+-|||.++.|+.+.|+. 
T Consensus       299 --t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~--g~~~~~~i~~~~~~~~~~-~vpVIadGGI~~~~di~kAla~G  373 (505)
T PLN02274        299 --TMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAV--GRGQATAVYKVASIAAQH-GVPVIADGGISNSGHIVKALTLG  373 (505)
T ss_pred             --CHHHHHHHHHcCcCEEEECCCCCccccCcccccc--CCCcccHHHHHHHHHHhc-CCeEEEeCCCCCHHHHHHHHHcC
Confidence              2466888999999999773  221 101100000  000123566688888877 7999999999999999999987 


Q ss_pred             cCEEEEehhhhhC
Q psy2386         208 IDGVMLGREAYKN  220 (311)
Q Consensus       208 adgVmigRa~l~~  220 (311)
                      ||+||+|+.+..-
T Consensus       374 A~~V~vGs~~~~t  386 (505)
T PLN02274        374 ASTVMMGSFLAGT  386 (505)
T ss_pred             CCEEEEchhhccc
Confidence            9999999998653

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=98.35  E-value=1.1e-05  Score=75.44  Aligned_cols=142  Identities=13%  Similarity=0.174  Sum_probs=95.5

Q ss_pred             CCCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .++|+.|.|.+..+ +.+.+..+.+.+.+++.|-+..|.|..                     ++.+++ .++.|...+.
T Consensus        54 tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~P~~---------------------~~~lk~-~Gi~v~~~v~  111 (320)
T cd04743          54 GDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGRPDQ---------------------ARALEA-IGISTYLHVP  111 (320)
T ss_pred             cCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCChHH---------------------HHHHHH-CCCEEEEEeC
Confidence            47899999965322 223445566777889999888766631                     244554 3777776543


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH-HHHHHhC-----CCCeEEEecCCC
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV-YNLKKDF-----PELEIIINGGIK  196 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i-~~i~~~~-----~~ipvi~nGgI~  196 (311)
                      .           .+.++++++.|+|.|++.|..+  .|..|...   ...-|..+ ..+.+..     .++|||+.|||.
T Consensus       112 s-----------~~~A~~a~~~GaD~vVaqG~EA--GGH~G~~~---t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~  175 (320)
T cd04743         112 S-----------PGLLKQFLENGARKFIFEGREC--GGHVGPRS---SFVLWESAIDALLAANGPDKAGKIHLLFAGGIH  175 (320)
T ss_pred             C-----------HHHHHHHHHcCCCEEEEecCcC--cCCCCCCC---chhhHHHHHHHHHHhhcccccCCccEEEEcCCC
Confidence            2           4678999999999999998873  55544211   11233332 2332211     169999999999


Q ss_pred             CHHHHHHHHhh-c--------CEEEEehhhhhCCcc
Q psy2386         197 TKKEIDLHLNY-I--------DGVMLGREAYKNPFL  223 (311)
Q Consensus       197 s~~da~~~l~~-a--------dgVmigRa~l~~P~i  223 (311)
                      +...+..++.. +        +||++|+.++.-+..
T Consensus       176 dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         176 DERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             CHHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence            99999888875 6        899999999775544

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=98.34  E-value=6.8e-05  Score=65.82  Aligned_cols=143  Identities=14%  Similarity=0.089  Sum_probs=97.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +..+++-+.-.||..+  .++.+.++|+|.|-+++-+|.                ..+.++++.+++ .++++.+-+-..
T Consensus        52 ~~~i~~d~k~~d~~~~--~~~~~~~~Gad~i~vh~~~~~----------------~~~~~~i~~~~~-~g~~~~~~~~~~  112 (206)
T TIGR03128        52 DRKVLADLKTMDAGEY--EAEQAFAAGADIVTVLGVADD----------------ATIKGAVKAAKK-HGKEVQVDLINV  112 (206)
T ss_pred             CCEEEEEEeeccchHH--HHHHHHHcCCCEEEEeccCCH----------------HHHHHHHHHHHH-cCCEEEEEecCC
Confidence            3456666543466644  456677899999999865431                345677777776 488887753211


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      ++       ..+-++.+.+.|+|++.+++.+.   +   .   ...+..++.++++++.++..++...||| +++.+.++
T Consensus       113 ~t-------~~~~~~~~~~~g~d~v~~~pg~~---~---~---~~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~  175 (206)
T TIGR03128       113 KD-------KVKRAKELKELGADYIGVHTGLD---E---Q---AKGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDV  175 (206)
T ss_pred             CC-------hHHHHHHHHHcCCCEEEEcCCcC---c---c---cCCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHH
Confidence            11       24556666788999999874321   1   0   1112356788888887755666668999 88999999


Q ss_pred             Hhh-cCEEEEehhhhhCCcc
Q psy2386         205 LNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P~i  223 (311)
                      ++. +|+|.+||+++..+..
T Consensus       176 ~~~Ga~~v~vGsai~~~~d~  195 (206)
T TIGR03128       176 IKLGPDIVIVGGAITKAADP  195 (206)
T ss_pred             HHcCCCEEEEeehhcCCCCH
Confidence            976 9999999999876653

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=98.34  E-value=2.6e-05  Score=70.79  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc-----cC-ccc--CChHHHHHHHHHHhcc-ccceeEEEEeccC-
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF-----GA-ILM--TKPLLVSDCIKAMRDS-VEIDITVKHRIGI-  125 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~-----G~-~Ll--~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~-  125 (311)
                      +++...++++.+.+.|+|.|||.  -|.+.-.-+|-     +. +|-  -.++.+.++++.+++. .++|+.+=.-... 
T Consensus        29 ~~e~s~e~i~~L~~~GaD~iELG--vPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi  106 (265)
T COG0159          29 DLETSLEIIKTLVEAGADILELG--VPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI  106 (265)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEec--CCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence            67899999999999999999995  45443222210     11 111  2467888999999954 6788765322110 


Q ss_pred             -CC--------------------CCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------------ccccCCCCc
Q psy2386         126 -DD--------------------INSYDFVRDFVGTVSSAGCRTFIVHARNA-------------------FLKKLNPKQ  165 (311)
Q Consensus       126 -~~--------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------------~~~G~~g~~  165 (311)
                       ..                    +-..++..++.+.+++.|++.|-+-+-|.                   ...|.+|.+
T Consensus       107 ~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~~  186 (265)
T COG0159         107 FNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGAR  186 (265)
T ss_pred             HHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCCC
Confidence             00                    01122223344444444444443322111                   012444543


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      ...... --+.++++++.. ++||...=||+|++++.++.+.||||.+|+++.
T Consensus       187 ~~~~~~-~~~~v~~vr~~~-~~Pv~vGFGIs~~e~~~~v~~~ADGVIVGSAiV  237 (265)
T COG0159         187 NPVSAD-VKELVKRVRKYT-DVPVLVGFGISSPEQAAQVAEAADGVIVGSAIV  237 (265)
T ss_pred             cccchh-HHHHHHHHHHhc-CCCeEEecCcCCHHHHHHHHHhCCeEEEcHHHH
Confidence            321111 246788999887 899999999999999999998899999999983

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=98.32  E-value=2.2e-05  Score=68.32  Aligned_cols=146  Identities=16%  Similarity=0.233  Sum_probs=97.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcc----ccccCcc-----cCcccCChHHHHHHHH--------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN----RVQNGFF-----GAILMTKPLLVSDCIK--------  107 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~----~v~~~~~-----G~~Ll~~~~~~~~iv~--------  107 (311)
                      ..|+++=+-+.+++++.+.++.+.+.|++.|++.+--|..    +..+..+     |+...-+++.+.+.+.        
T Consensus         3 ~~~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~   82 (190)
T cd00452           3 AQPLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVS   82 (190)
T ss_pred             cCcEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEc
Confidence            4577777889999999999999999999999997654411    0111111     3333344444443332        


Q ss_pred             ---------HHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386         108 ---------AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus       108 ---------~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                               ..++ .+.++.+    |...      ..| +..+.++|+|+|.+.+-.               +...++++
T Consensus        83 p~~~~~~~~~~~~-~~~~~i~----gv~t------~~e-~~~A~~~Gad~i~~~p~~---------------~~g~~~~~  135 (190)
T cd00452          83 PGLDPEVVKAANR-AGIPLLP----GVAT------PTE-IMQALELGADIVKLFPAE---------------AVGPAYIK  135 (190)
T ss_pred             CCCCHHHHHHHHH-cCCcEEC----CcCC------HHH-HHHHHHCCCCEEEEcCCc---------------ccCHHHHH
Confidence                     2222 2333332    3321      223 455578999999885321               12457888


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      .+++.+|++|+++.||| +++++.++++. +|+|.++++++
T Consensus       136 ~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~  175 (190)
T cd00452         136 ALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             HHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence            88888777999999999 99999999987 99999999987

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.32  E-value=3.4e-05  Score=68.59  Aligned_cols=150  Identities=14%  Similarity=0.082  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCC-------
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGID-------  126 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~-------  126 (311)
                      ..+.++.+.+.|.|+|-|.              ++.--+.+.+.++++++|+.. +|+.+-..      .+.|       
T Consensus        16 ~~~~~~~~~~~gtdai~vG--------------GS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i~~~aDa~l~~sv   80 (223)
T TIGR01768        16 ADEIAKAAAESGTDAILIG--------------GSQGVTYEKTDTLIEALRRYG-LPIILFPSNPTNVSRDADALFFPSV   80 (223)
T ss_pred             cHHHHHHHHhcCCCEEEEc--------------CCCcccHHHHHHHHHHHhccC-CCEEEeCCCccccCcCCCEEEEEEe
Confidence            3456667778899999873              344345678899999999864 89876321      1111       


Q ss_pred             --CCCc-H--HHHHHHHHHHHHcCC-----CEEEEecCc--------c-----------------cccc-------CCCC
Q psy2386         127 --DINS-Y--DFVRDFVGTVSSAGC-----RTFIVHARN--------A-----------------FLKK-------LNPK  164 (311)
Q Consensus       127 --~~~~-~--~~~~e~~~~l~~~G~-----~~itvh~Rt--------~-----------------~~~G-------~~g~  164 (311)
                        ..+. +  ..-.+.+..+.+.+.     .++++.+..        .                 .+-|       ++|.
T Consensus        81 lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYlE~gs~  160 (223)
T TIGR01768        81 LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYLEAGSG  160 (223)
T ss_pred             ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence              0111 1  111344555554442     233333110        0                 0011       1221


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                         +..+.+.+.++++++.+.++|++..|||+|+++++++++. ||+|++|..++.||..+.++
T Consensus       161 ---~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~dp~~~~~~  221 (223)
T TIGR01768       161 ---APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEEDVDKALET  221 (223)
T ss_pred             ---CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhCHHHHHHh
Confidence               2345678999999998646999999999999999999985 99999999999998776654

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>cd02812 PcrB_like PcrB_like proteins

Probab=98.32  E-value=2.6e-05  Score=69.21  Aligned_cols=56  Identities=18%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      .+.+.++++++.+.++|++..|||+|+++++++++. ||+|.+|.+++.||..+.++
T Consensus       161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~p~~~~~~  217 (219)
T cd02812         161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEEDPNAALET  217 (219)
T ss_pred             CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHH
Confidence            578999999997536999999999999999999985 99999999999999888765

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=98.32  E-value=1.5e-05  Score=76.17  Aligned_cols=138  Identities=17%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +|....+.++.+.++|+|.|-|+.--     +...+.+. -.+|..+.++++.    .++||.+    |.-.      ..
T Consensus       140 ~~~~~~e~a~~l~eAGad~I~ihgrt-----~~q~~~sg-~~~p~~l~~~i~~----~~IPVI~----G~V~------t~  199 (369)
T TIGR01304       140 SPQNAREIAPIVVKAGADLLVIQGTL-----VSAEHVST-SGEPLNLKEFIGE----LDVPVIA----GGVN------DY  199 (369)
T ss_pred             CCcCHHHHHHHHHHCCCCEEEEeccc-----hhhhccCC-CCCHHHHHHHHHH----CCCCEEE----eCCC------CH
Confidence            45567777888899999999998211     12222111 1246655555443    5789976    2211      13


Q ss_pred             HHHHHHHHcCCCEEEEecCcc--ccccCCCCcCCCCCcCcHHHHHHHHHh-------CC--CCeEEEecCCCCHHHHHHH
Q psy2386         136 DFVGTVSSAGCRTFIVHARNA--FLKKLNPKQNRKIPILKYNFVYNLKKD-------FP--ELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~--~~~G~~g~~~~~~~~~~~~~i~~i~~~-------~~--~ipvi~nGgI~s~~da~~~  204 (311)
                      +-++.+.+.|+|.|.+ |+..  ...+..|     ........+.++++.       ..  .+|||+.|||.+..|+.+.
T Consensus       200 e~A~~~~~aGaDgV~~-G~gg~~~~~~~lg-----~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kA  273 (369)
T TIGR01304       200 TTALHLMRTGAAGVIV-GPGGANTTRLVLG-----IEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKA  273 (369)
T ss_pred             HHHHHHHHcCCCEEEE-CCCCCcccccccC-----CCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHH
Confidence            4566667799999983 3321  1111111     011223344444322       21  3899999999999999999


Q ss_pred             Hhh-cCEEEEehhhhh
Q psy2386         205 LNY-IDGVMLGREAYK  219 (311)
Q Consensus       205 l~~-adgVmigRa~l~  219 (311)
                      +.. ||+||+|+++..
T Consensus       274 lAlGAdaV~iGt~~a~  289 (369)
T TIGR01304       274 IACGADAVVLGSPLAR  289 (369)
T ss_pred             HHcCCCEeeeHHHHHh
Confidence            987 999999999876

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=98.31  E-value=1.5e-06  Score=78.03  Aligned_cols=89  Identities=18%  Similarity=0.308  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.+++..-++...|         .+.+++.|+++.+.+ .+||...|||+|.+|++++++. |+.|
T Consensus        30 dP~~~a~~~~~~g~~~l~ivDLdaa~~g---------~~~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~Ga~~V   99 (229)
T PF00977_consen   30 DPVEVAKAFNEQGADELHIVDLDAAKEG---------RGSNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAGADRV   99 (229)
T ss_dssp             CHHHHHHHHHHTT-SEEEEEEHHHHCCT---------HHHHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT-SEE
T ss_pred             CHHHHHHHHHHcCCCEEEEEEccCcccC---------chhHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhCCCEE
Confidence            3578999999999999998755432222         125889999999998 6999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|+.++.||.++.++.+.+
T Consensus       100 vigt~~~~~~~~l~~~~~~~  119 (229)
T PF00977_consen  100 VIGTEALEDPELLEELAERY  119 (229)
T ss_dssp             EESHHHHHCCHHHHHHHHHH
T ss_pred             EeChHHhhchhHHHHHHHHc
Confidence            99999999999999988754

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.31  E-value=9.7e-06  Score=77.55  Aligned_cols=145  Identities=17%  Similarity=0.161  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      ++....+-++.+.++|+|.|-++..-..     ..++..- .++..+.++++.    .++||.+    |.-.      ..
T Consensus       139 ~~~~~~e~a~~l~eaGvd~I~vhgrt~~-----~~h~~~~-~~~~~i~~~ik~----~~ipVIa----G~V~------t~  198 (368)
T PRK08649        139 SPQRAQELAPTVVEAGVDLFVIQGTVVS-----AEHVSKE-GEPLNLKEFIYE----LDVPVIV----GGCV------TY  198 (368)
T ss_pred             CCcCHHHHHHHHHHCCCCEEEEeccchh-----hhccCCc-CCHHHHHHHHHH----CCCCEEE----eCCC------CH
Confidence            4555667777788999999999843211     1111110 145554444443    4789876    2111      14


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-------C--CCCeEEEecCCCCHHHHHHHHh
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-------F--PELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-------~--~~ipvi~nGgI~s~~da~~~l~  206 (311)
                      +-++.+.++|+|.|.+ |+... .+.........+..-+..+.++++.       .  .++|||+.|||.+..|+.+.+.
T Consensus       199 e~A~~l~~aGAD~V~V-G~G~G-s~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAla  276 (368)
T PRK08649        199 TTALHLMRTGAAGVLV-GIGPG-AACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIA  276 (368)
T ss_pred             HHHHHHHHcCCCEEEE-CCCCC-cCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHH
Confidence            5677778899999977 55320 0111000000011223344444321       1  1489999999999999999998


Q ss_pred             h-cCEEEEehhhhhCCc
Q psy2386         207 Y-IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~  222 (311)
                      . ||+||+|+.+..-..
T Consensus       277 lGAd~Vm~Gs~fa~t~E  293 (368)
T PRK08649        277 CGADAVMLGSPLARAAE  293 (368)
T ss_pred             cCCCeecccchhccccc
Confidence            7 999999999977433

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=98.26  E-value=4.7e-06  Score=79.30  Aligned_cols=114  Identities=16%  Similarity=0.223  Sum_probs=69.2

Q ss_pred             CChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~  174 (311)
                      .+++-+.+.|+.+|+.. ++||+||+-.+...       ..++..+.++|+|+|+|.|... -.|.+|..- ...+.+-.
T Consensus       185 ~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~-------~~~~~~~~~ag~D~ItIDG~~G-GTGAap~~~~d~~GlP~~  256 (368)
T PF01645_consen  185 YSIEDLAQLIEELRELNPGKPVGVKLVAGRGV-------EDIAAGAAKAGADFITIDGAEG-GTGAAPLTSMDHVGLPTE  256 (368)
T ss_dssp             SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTH-------HHHHHHHHHTT-SEEEEE-TT----SSEECCHHHHC---HH
T ss_pred             CCHHHHHHHHHHHHhhCCCCcEEEEECCCCcH-------HHHHHhhhhccCCEEEEeCCCC-CCCCCchhHHhhCCCcHH
Confidence            56788999999999988 89999999876332       1233337899999999998753 112221100 00111111


Q ss_pred             HHHHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         175 NFVYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       175 ~~i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      ..+.++.+.     + .++.+++.||+.|+.|+.+.+.. ||+|.+||++|
T Consensus       257 ~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~l  307 (368)
T PF01645_consen  257 YALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTAAL  307 (368)
T ss_dssp             HHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHHHH
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecchhh
Confidence            123333221     1 14899999999999999999987 99999999986

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.22  E-value=2.8e-05  Score=76.89  Aligned_cols=138  Identities=13%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCc
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINS  130 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~  130 (311)
                      +.|-.++.. +.++.+.+.|+|.|-|...-        |       .-..+.++++.+|+.. +.+|.+    |.-.   
T Consensus       221 av~~~~~~~-~~a~~Lv~aGvd~i~~D~a~--------~-------~~~~~~~~i~~ik~~~p~~~v~a----gnv~---  277 (479)
T PRK07807        221 AVGINGDVA-AKARALLEAGVDVLVVDTAH--------G-------HQEKMLEALRAVRALDPGVPIVA----GNVV---  277 (479)
T ss_pred             hhccChhHH-HHHHHHHHhCCCEEEEeccC--------C-------ccHHHHHHHHHHHHHCCCCeEEe----eccC---
Confidence            334333433 33344455688887665221        1       1466888999999876 667766    2111   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCCCHHHHHHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~s~~da~~~  204 (311)
                         +.+-++.+.++|+|.|-|-   |.-++.+++.|-     +..++..+.++++   .. ++|||+-|||.++.|+.+.
T Consensus       278 ---t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~-----~~p~~~av~~~~~~~~~~-~~~via~ggi~~~~~~~~a  348 (479)
T PRK07807        278 ---TAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGV-----GRPQFSAVLECAAAAREL-GAHVWADGGVRHPRDVALA  348 (479)
T ss_pred             ---CHHHHHHHHHcCCCEEEECccCCcccccccccCC-----chhHHHHHHHHHHHHHhc-CCcEEecCCCCCHHHHHHH
Confidence               2567888999999999863   222234444432     2247888888877   44 6999999999999999999


Q ss_pred             Hhh-cCEEEEehhhhhCC
Q psy2386         205 LNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P  221 (311)
                      +.. ||+||+|+.+.+-.
T Consensus       349 l~~ga~~v~~g~~~ag~~  366 (479)
T PRK07807        349 LAAGASNVMIGSWFAGTY  366 (479)
T ss_pred             HHcCCCeeeccHhhccCc
Confidence            987 99999999986544

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.21  E-value=4.6e-05  Score=75.77  Aligned_cols=144  Identities=13%  Similarity=0.152  Sum_probs=94.0

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      .+-...+.+|+. .+.++.+.++|+|.|=++..  .             .+...+.+.++.+++.. +.||.++-=.   
T Consensus       218 ~V~aai~~~~~~-~e~a~~L~~agvdvivvD~a--~-------------g~~~~vl~~i~~i~~~~p~~~vi~g~v~---  278 (486)
T PRK05567        218 RVGAAVGVGADN-EERAEALVEAGVDVLVVDTA--H-------------GHSEGVLDRVREIKAKYPDVQIIAGNVA---  278 (486)
T ss_pred             EEEeecccCcch-HHHHHHHHHhCCCEEEEECC--C-------------CcchhHHHHHHHHHhhCCCCCEEEeccC---
Confidence            444455656654 45566677789998855411  1             12244667788888876 7888883211   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCC-CcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHHH
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNP-KQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g-~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~~  203 (311)
                             ..+-++.+.++|+|+|.+-....   ..++ ......+...++.+.++++..  .++|||+.|||+++.|+.+
T Consensus       279 -------t~e~a~~l~~aGad~i~vg~g~g---s~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~k  348 (486)
T PRK05567        279 -------TAEAARALIEAGADAVKVGIGPG---SICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAK  348 (486)
T ss_pred             -------CHHHHHHHHHcCCCEEEECCCCC---ccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHH
Confidence                   24668888999999997621100   0000 001112234677777776643  2699999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhC
Q psy2386         204 HLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~  220 (311)
                      .++. ||.||+|+.+.+-
T Consensus       349 Ala~GA~~v~~G~~~a~~  366 (486)
T PRK05567        349 ALAAGASAVMLGSMLAGT  366 (486)
T ss_pred             HHHhCCCEEEECcccccc
Confidence            9987 9999999887543

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=98.20  E-value=7.8e-05  Score=67.93  Aligned_cols=189  Identities=16%  Similarity=0.190  Sum_probs=108.8

Q ss_pred             CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc-----c-Cccc--CChHHHHHHHHHHh-ccccc
Q psy2386          47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF-----G-AILM--TKPLLVSDCIKAMR-DSVEI  115 (311)
Q Consensus        47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~-----G-~~Ll--~~~~~~~~iv~~v~-~~~~~  115 (311)
                      .++.=|...  |.+.+.++++.+.+.|+|.|||.  =|...-.-+|-     . -+|-  -+.+.+.++++.++ +..++
T Consensus        11 ~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiG--iPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~   88 (259)
T PF00290_consen   11 ALIPYITAGYPDLETTLEILKALEEAGADIIEIG--IPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDI   88 (259)
T ss_dssp             EEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCC
Confidence            355555544  55889999999999999999995  34433222210     0 0010  24677888999999 77788


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE-------------------------e-cCcc-------------
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV-------------------------H-ARNA-------------  156 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv-------------------------h-~Rt~-------------  156 (311)
                      |+.+=.-  ++.--.+ -..+|++.+.++|++.+.+                         - +.|.             
T Consensus        89 pivlm~Y--~N~i~~~-G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~g  165 (259)
T PF00290_consen   89 PIVLMTY--YNPIFQY-GIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASG  165 (259)
T ss_dssp             EEEEEE---HHHHHHH--HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SS
T ss_pred             CEEEEee--ccHHhcc-chHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCc
Confidence            9765321  1100000 0223555555555555543                         1 1111             


Q ss_pred             -----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         157 -----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       157 -----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                           ...|.+|.... .+..--+.++++++.. ++||...=||+|++++.++...||||.||++++      +.+.+. 
T Consensus       166 FiY~vs~~GvTG~~~~-~~~~l~~~i~~ik~~~-~~Pv~vGFGI~~~e~~~~~~~~aDGvIVGSa~v------~~i~~~-  236 (259)
T PF00290_consen  166 FIYLVSRMGVTGSRTE-LPDELKEFIKRIKKHT-DLPVAVGFGISTPEQAKKLAAGADGVIVGSAFV------KIIEEN-  236 (259)
T ss_dssp             EEEEESSSSSSSTTSS-CHHHHHHHHHHHHHTT-SS-EEEESSS-SHHHHHHHHTTSSEEEESHHHH------HHHHHT-
T ss_pred             EEEeeccCCCCCCccc-chHHHHHHHHHHHhhc-CcceEEecCCCCHHHHHHHHccCCEEEECHHHH------HHHHHc-
Confidence                 01233333110 1111136788999887 899999999999999999996699999999984      344321 


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2386         232 YSNLPQYKIPTRIDIINRMILYIRQQ  257 (311)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                              ..+..+.++.+.+++.++
T Consensus       237 --------~~~~~~~~~~~~~~~~~l  254 (259)
T PF00290_consen  237 --------GDDAEKFLKELKEFVREL  254 (259)
T ss_dssp             --------CCHHHHHHHHHHHHHHHH
T ss_pred             --------cccHHHHHHHHHHHHHHH
Confidence                    123456667766666654

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=98.19  E-value=8.9e-05  Score=66.51  Aligned_cols=141  Identities=12%  Similarity=0.117  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEE--EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc-CCC--CC
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-IDD--IN  129 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~I--diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-~~~--~~  129 (311)
                      .+...+...++.+.+.|+++|  .+|.+-..           --...+.+.++.+..++ .++|+.+-.... ..-  ..
T Consensus        73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~-----------~~~~~~~i~~v~~~~~~-~g~~~iie~~~~g~~~~~~~  140 (235)
T cd00958          73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE-----------EREMLEELARVAAEAHK-YGLPLIAWMYPRGPAVKNEK  140 (235)
T ss_pred             CCchhhhcCHHHHHHCCCCEEEEEEecCCch-----------HHHHHHHHHHHHHHHHH-cCCCEEEEEeccCCcccCcc
Confidence            345556666677888999999  45544110           00112233444443333 478888755431 100  01


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC--CCHHH----HHH
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKE----IDL  203 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI--~s~~d----a~~  203 (311)
                      +.+.+...++...+.|+|+|-+.. +                .+.+.++++++.. .+||++.||+  .|++|    +.+
T Consensus       141 ~~~~i~~~~~~a~~~GaD~Ik~~~-~----------------~~~~~~~~i~~~~-~~pvv~~GG~~~~~~~~~l~~~~~  202 (235)
T cd00958         141 DPDLIAYAARIGAELGADIVKTKY-T----------------GDAESFKEVVEGC-PVPVVIAGGPKKDSEEEFLKMVYD  202 (235)
T ss_pred             CHHHHHHHHHHHHHHCCCEEEecC-C----------------CCHHHHHHHHhcC-CCCEEEeCCCCCCCHHHHHHHHHH
Confidence            112333447778899999997731 1                2678899999887 6999998987  67777    555


Q ss_pred             HHhh-cCEEEEehhhhhCCcchH
Q psy2386         204 HLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      +++. ++||.+||.++..|....
T Consensus       203 ~~~~Ga~gv~vg~~i~~~~dp~~  225 (235)
T cd00958         203 AMEAGAAGVAVGRNIFQRPDPVA  225 (235)
T ss_pred             HHHcCCcEEEechhhhcCCCHHH
Confidence            5655 999999999998776433

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=98.18  E-value=7.9e-05  Score=66.46  Aligned_cols=150  Identities=18%  Similarity=0.250  Sum_probs=102.2

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEecc
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g  124 (311)
                      +.++|...|+..+.+-.+.+++.|+|.+-+-  =|+=+||.   .+|          -++++++|+. ++.|+.|=+=+ 
T Consensus         2 i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~---tfg----------~~~i~~i~~~~~~~~~dvHLMv-   67 (220)
T PRK08883          2 IAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNL---TFG----------APICKALRDYGITAPIDVHLMV-   67 (220)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCcc---ccC----------HHHHHHHHHhCCCCCEEEEecc-
Confidence            4568889999999999999999998865443  34433321   122          3557778776 57887765443 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------------------cccc
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKK  160 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------------------~~~G  160 (311)
                       ++      ...+++.+.++|++.|++|.-..                                            ...|
T Consensus        68 -~~------p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PG  140 (220)
T PRK08883         68 -KP------VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPG  140 (220)
T ss_pred             -CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCC
Confidence             22      35678888999999999984310                                            0013


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.|..  .. +..++.++++++...    ++||.+-|||+ .+.+.++.+. ||++.+|++++..+.
T Consensus       141 fgGq~--fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d  203 (220)
T PRK08883        141 FGGQS--FI-PHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFGQPD  203 (220)
T ss_pred             CCCce--ec-HhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence            33321  11 224566777776542    38999999999 8999999876 999999999876544

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.18  E-value=4.4e-05  Score=75.45  Aligned_cols=144  Identities=15%  Similarity=0.116  Sum_probs=95.4

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~  125 (311)
                      ..+-.+.|..++....+..++ +.|+|.|-|-...+               +++.+.++++.+++.. ++||.+    |.
T Consensus       214 l~Vgaav~~~~~~~~ra~~Lv-~aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~----g~  273 (475)
T TIGR01303       214 LRIGAAVGINGDVGGKAKALL-DAGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVA----GN  273 (475)
T ss_pred             ceehheeeeCccHHHHHHHHH-HhCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEE----ec
Confidence            344555555555555555444 46899887764432               3577899999999865 789888    32


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA---FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -.      +.+-++.|.++|+|.|-|-+...   ..+++.|- ......+.++....+++ . ++|||+.|||+++.|+.
T Consensus       274 ~~------t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~-g~~~~~a~~~~~~~~~~-~-~~~viadGgi~~~~di~  344 (475)
T TIGR01303       274 VV------SAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGV-GRPQFSAVLECAAEARK-L-GGHVWADGGVRHPRDVA  344 (475)
T ss_pred             cC------CHHHHHHHHHhCCCEEEECCcCCccccCccccCC-CCchHHHHHHHHHHHHH-c-CCcEEEeCCCCCHHHHH
Confidence            21      25678889999999998754321   12233221 01111234454444444 4 69999999999999999


Q ss_pred             HHHhh-cCEEEEehhhhh
Q psy2386         203 LHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~  219 (311)
                      +.|.. ||+||+|+-+-+
T Consensus       345 kala~GA~~vm~g~~~ag  362 (475)
T TIGR01303       345 LALAAGASNVMVGSWFAG  362 (475)
T ss_pred             HHHHcCCCEEeechhhcc
Confidence            99987 999999987743

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.17  E-value=9.2e-06  Score=73.41  Aligned_cols=86  Identities=12%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|++.++|-.-++...|         .+.+++.|+++.+.+  +||...|||+|.+|++++++. ||-|
T Consensus        31 dP~~~A~~~~~~ga~~lhivDLd~a~~g---------~~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~Ga~rv   99 (241)
T PRK14114         31 DPAELVEKLIEEGFTLIHVVDLSKAIEN---------SVENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLGYRRQ   99 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCcccC---------CcchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCCCCEE
Confidence            3579999999999999998654431222         135899999999986  699999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHh
Q psy2386         212 MLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~  229 (311)
                      .+|+.++.||.+++++.+
T Consensus       100 vigT~a~~~p~~l~~~~~  117 (241)
T PRK14114        100 IVSSKVLEDPSFLKFLKE  117 (241)
T ss_pred             EECchhhCCHHHHHHHHH
Confidence            999999999999999843

>PLN02334 ribulose-phosphate 3-epimerase

Probab=98.15  E-value=0.00018  Score=64.46  Aligned_cols=143  Identities=16%  Similarity=0.256  Sum_probs=94.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.++.+.|.-++|+++.+.+   .+.|+|+|-+|.| +..                +...+.++.+++. +.-+.+-+.
T Consensus        64 ~~~~~~vhlmv~~p~d~~~~~---~~~gad~v~vH~~q~~~----------------d~~~~~~~~i~~~-g~~iGls~~  123 (229)
T PLN02334         64 TDAPLDCHLMVTNPEDYVPDF---AKAGASIFTFHIEQAST----------------IHLHRLIQQIKSA-GMKAGVVLN  123 (229)
T ss_pred             CCCcEEEEeccCCHHHHHHHH---HHcCCCEEEEeeccccc----------------hhHHHHHHHHHHC-CCeEEEEEC
Confidence            356778999999999987555   5679999999866 221                2334556666553 332333222


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcC-CCEEE---EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAG-CRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G-~~~it---vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                        +.  .    ..+.++.+.+.| +|+|.   +++.+.      +.   ..++...+.++++++..+++||.+-||| +.
T Consensus       124 --~~--t----~~~~~~~~~~~~~~Dyi~~~~v~pg~~------~~---~~~~~~~~~i~~~~~~~~~~~I~a~GGI-~~  185 (229)
T PLN02334        124 --PG--T----PVEAVEPVVEKGLVDMVLVMSVEPGFG------GQ---SFIPSMMDKVRALRKKYPELDIEVDGGV-GP  185 (229)
T ss_pred             --CC--C----CHHHHHHHHhccCCCEEEEEEEecCCC------cc---ccCHHHHHHHHHHHHhCCCCcEEEeCCC-CH
Confidence              11  1    135556666664 99994   454321      11   1123356778888887557899999999 68


Q ss_pred             HHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         199 KEIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      +.+.++.+. +|+|.+|++++..+...
T Consensus       186 e~i~~l~~aGad~vvvgsai~~~~d~~  212 (229)
T PLN02334        186 STIDKAAEAGANVIVAGSAVFGAPDYA  212 (229)
T ss_pred             HHHHHHHHcCCCEEEEChHHhCCCCHH
Confidence            999999986 99999999998766543

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=98.14  E-value=1.6e-05  Score=72.02  Aligned_cols=103  Identities=14%  Similarity=0.057  Sum_probs=79.1

Q ss_pred             EEEEeccCCC-CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386         118 TVKHRIGIDD-INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK  196 (311)
Q Consensus       118 svKiR~g~~~-~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~  196 (311)
                      .|+.+-|... ...+.+..+.++.+.+.|+..+++--=.+.. |         .+.+.+.|+++.+.+ .+||...|||+
T Consensus        16 vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a~-g---------~~~n~~~i~~i~~~~-~~~v~vgGGIr   84 (243)
T TIGR01919        16 AVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLVDLDAAF-G---------GGNNEMMLEEVVKLL-VVVEELSGGRR   84 (243)
T ss_pred             EEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEEECCCCC-C---------CcchHHHHHHHHHHC-CCCEEEcCCCC
Confidence            4555555311 1112245688899999999999886433211 1         125889999999998 69999999999


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      |.+|++++++. ||-|++|+.++.||.++.++.+.+
T Consensus        85 s~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~  120 (243)
T TIGR01919        85 DDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYG  120 (243)
T ss_pred             CHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHc
Confidence            99999999987 999999999999999999887653

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=98.13  E-value=1.1e-05  Score=71.91  Aligned_cols=89  Identities=16%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..+.++.+.+.|+..+++-.-+....|         .+.+.+.|+++.+.+ ++||-..|||+|.+++.++++. ++-|
T Consensus        32 ~P~~~a~~~~~~Ga~~lHlVDLdgA~~g---------~~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G~~rV  101 (241)
T COG0106          32 DPLEVAKKWSDQGAEWLHLVDLDGAKAG---------GPRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAGVARV  101 (241)
T ss_pred             CHHHHHHHHHHcCCcEEEEeeccccccC---------CcccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCCCCEE
Confidence            4679999999999999998654432222         235789999999998 7999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|+.++.||.++.++.+.+
T Consensus       102 iiGt~av~~p~~v~~~~~~~  121 (241)
T COG0106         102 IIGTAAVKNPDLVKELCEEY  121 (241)
T ss_pred             EEecceecCHHHHHHHHHHc
Confidence            99999999999999998764

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=98.13  E-value=1.4e-05  Score=72.25  Aligned_cols=80  Identities=10%  Similarity=0.069  Sum_probs=70.5

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+++.|++.|++-.-     |         .+ +++.|+++.+.+ ++||...|||++ ++++++++. ||.|.+
T Consensus        41 ~~~A~~~~~~Ga~~lHvVDL-----g---------~~-n~~~i~~i~~~~-~~~v~vGGGIr~-e~v~~~l~aGa~rVvI  103 (253)
T TIGR02129        41 SYYAKLYKDDGVKGCHVIML-----G---------PN-NDDAAKEALHAY-PGGLQVGGGIND-TNAQEWLDEGASHVIV  103 (253)
T ss_pred             HHHHHHHHHcCCCEEEEEEC-----C---------CC-cHHHHHHHHHhC-CCCEEEeCCcCH-HHHHHHHHcCCCEEEE
Confidence            78999999999999998633     1         13 889999999987 799999999998 999999987 999999


Q ss_pred             ehhhhhC----CcchHHhHhhh
Q psy2386         214 GREAYKN----PFLMSNFDLNY  231 (311)
Q Consensus       214 gRa~l~~----P~i~~~~~~~~  231 (311)
                      |+.++.|    |.+++++.+.+
T Consensus       104 GS~av~~~~i~~~~~~~i~~~f  125 (253)
T TIGR02129       104 TSWLFTKGKFDLKRLKEIVSLV  125 (253)
T ss_pred             CcHHHhCCCCCHHHHHHHHHHh
Confidence            9999998    67888887765

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.13  E-value=0.0001  Score=67.61  Aligned_cols=148  Identities=14%  Similarity=0.174  Sum_probs=93.8

Q ss_pred             CCCeEEEecCCCH-------HHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc---
Q psy2386          45 EHPIAFQVGDNEP-------KKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~~-------~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---  112 (311)
                      +.++++.+.+..+       +.+..-++.+.+.|+|.|++-  .|--              . .+.+.+.++++++.   
T Consensus        73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~--------------~-~~~~~~~~~~v~~~~~~  137 (267)
T PRK07226         73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNVGSE--------------T-EAEMLEDLGEVAEECEE  137 (267)
T ss_pred             CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEecCCh--------------h-HHHHHHHHHHHHHHHHH
Confidence            4667887763221       334444666778899999885  3310              0 12233334444333   


Q ss_pred             ccceeEEEEec-cC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         113 VEIDITVKHRI-GI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       113 ~~~pvsvKiR~-g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      .++|+.|=... |.  ....+.+.....++...+.|+|+|...        |.         .+.+.++++.+.. .+||
T Consensus       138 ~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~--------~~---------~~~~~l~~~~~~~-~ipV  199 (267)
T PRK07226        138 WGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTN--------YT---------GDPESFREVVEGC-PVPV  199 (267)
T ss_pred             cCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeC--------CC---------CCHHHHHHHHHhC-CCCE
Confidence            37887663211 11  111112244556788889999999443        11         2567888888776 6999


Q ss_pred             EEecCCC--CHHHHHHHH----hh-cCEEEEehhhhhCCcchH
Q psy2386         190 IINGGIK--TKKEIDLHL----NY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       190 i~nGgI~--s~~da~~~l----~~-adgVmigRa~l~~P~i~~  225 (311)
                      ++.|||+  |.+++.+++    +. |+|+.+||+++..|....
T Consensus       200 ~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~  242 (267)
T PRK07226        200 VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEA  242 (267)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHH
Confidence            9999999  999999887    33 999999999998877443

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=98.12  E-value=0.00027  Score=63.37  Aligned_cols=52  Identities=19%  Similarity=0.358  Sum_probs=47.6

Q ss_pred             CcCcHHHHHHHHHhCCCC-eEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         170 PILKYNFVYNLKKDFPEL-EIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~i-pvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .+.+.+.++++++.+ ++ ||+..|||+|++++++++.. ||+|.+|+++..||.
T Consensus       168 ~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~  221 (232)
T PRK04169        168 DPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPK  221 (232)
T ss_pred             CCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHH
Confidence            456899999999987 77 99999999999999997766 999999999999998

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=98.12  E-value=0.00022  Score=62.98  Aligned_cols=150  Identities=16%  Similarity=0.212  Sum_probs=96.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc----ccCccc------CcccCChHHHHHHHHH------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV----QNGFFG------AILMTKPLLVSDCIKA------  108 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v----~~~~~G------~~Ll~~~~~~~~iv~~------  108 (311)
                      ..++++=+-+.++++..+.++.+.+.|+..||+-+--|...-    .+..++      +.=.-+++.+...+++      
T Consensus         9 ~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fiv   88 (206)
T PRK09140          9 KLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIV   88 (206)
T ss_pred             hCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEE
Confidence            456777788999999999999999999999999754442210    011111      1112233333332221      


Q ss_pred             -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386         109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                                 .+. .+.++..    |.   .+   ..| +....+.|+|+|.+.+-.               ...++++
T Consensus        89 sp~~~~~v~~~~~~-~~~~~~~----G~---~t---~~E-~~~A~~~Gad~vk~Fpa~---------------~~G~~~l  141 (206)
T PRK09140         89 TPNTDPEVIRRAVA-LGMVVMP----GV---AT---PTE-AFAALRAGAQALKLFPAS---------------QLGPAGI  141 (206)
T ss_pred             CCCCCHHHHHHHHH-CCCcEEc----cc---CC---HHH-HHHHHHcCCCEEEECCCC---------------CCCHHHH
Confidence                       111 1222222    10   11   123 455667899998874311               2457889


Q ss_pred             HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.+++.+| ++|+++.||| +++++.++++. +|+|.++++++...+
T Consensus       142 ~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~  187 (206)
T PRK09140        142 KALRAVLPPDVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQ  187 (206)
T ss_pred             HHHHhhcCCCCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhccccc
Confidence            99999885 6999999999 78999999987 999999999976433

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=98.10  E-value=0.00011  Score=64.95  Aligned_cols=134  Identities=15%  Similarity=0.154  Sum_probs=87.9

Q ss_pred             CCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          54 DNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      |..+ +.=..-++.+.+.|+|.||+-+-          +|...-.+.+.+.+-++++++.+ ++|+.|=+-.+.-.+   
T Consensus        65 G~~~~~~K~~E~~~Av~~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~---  131 (211)
T TIGR00126        65 GASTTDVKLYETKEAIKYGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTD---  131 (211)
T ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCH---
Confidence            4443 33333345677789999998632          34444457788888888888776 456555444443222   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-ad  209 (311)
                      ++....++.+.++|+|+|-..      .||.+      +.+..+.++.+++.++ .+||-+.|||+|.+++.++++. |+
T Consensus       132 ~ei~~a~~ia~eaGADfvKTs------TGf~~------~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~  199 (211)
T TIGR00126       132 EEIRKACEICIDAGADFVKTS------TGFGA------GGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGAS  199 (211)
T ss_pred             HHHHHHHHHHHHhCCCEEEeC------CCCCC------CCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhH
Confidence            256788888999999999653      23321      1245555555555542 5999999999999999999975 66


Q ss_pred             EEE
Q psy2386         210 GVM  212 (311)
Q Consensus       210 gVm  212 (311)
                      -+-
T Consensus       200 riG  202 (211)
T TIGR00126       200 RIG  202 (211)
T ss_pred             HhC
Confidence            443

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=98.07  E-value=1.9e-05  Score=74.64  Aligned_cols=82  Identities=17%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ...+++.++.|+|.|+++|-.  ..|..|.  ....+.-..++.++++.+ + ||||+.|||.+.+++..++.. ||||+
T Consensus       137 ~~~A~~~~~~G~d~vI~~g~e--AGGH~g~--~~~~~~t~~Lv~ev~~~~-~~iPViAAGGI~dg~~i~AAlalGA~gVq  211 (336)
T COG2070         137 VREALKAERAGADAVIAQGAE--AGGHRGG--VDLEVSTFALVPEVVDAV-DGIPVIAAGGIADGRGIAAALALGADGVQ  211 (336)
T ss_pred             HHHHHHHHhCCCCEEEecCCc--CCCcCCC--CCCCccHHHHHHHHHHHh-cCCCEEEecCccChHHHHHHHHhccHHHH
Confidence            578899999999999998876  3555442  001122357899999998 7 999999999999999999987 99999


Q ss_pred             EehhhhhCC
Q psy2386         213 LGREAYKNP  221 (311)
Q Consensus       213 igRa~l~~P  221 (311)
                      +|+.++.-.
T Consensus       212 ~GT~Fl~t~  220 (336)
T COG2070         212 MGTRFLATK  220 (336)
T ss_pred             hhhhhhccc
Confidence            999987644

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.04  E-value=2.6e-05  Score=70.05  Aligned_cols=88  Identities=13%  Similarity=0.089  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+.+.|++.+++-.=++. .|         .+.+.+.|+++.+.. ..||..-|||+|.+|++++++. ||-|
T Consensus        31 dP~~~a~~~~~~ga~~lhivDLd~a-~~---------~~~n~~~i~~i~~~~-~~~v~vGGGIrs~e~~~~~l~~Ga~kv   99 (232)
T PRK13586         31 NPIEIASKLYNEGYTRIHVVDLDAA-EG---------VGNNEMYIKEISKIG-FDWIQVGGGIRDIEKAKRLLSLDVNAL   99 (232)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCCc-CC---------CcchHHHHHHHHhhC-CCCEEEeCCcCCHHHHHHHHHCCCCEE
Confidence            3579999999999999998654431 12         124789999999854 3599999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|+.++.||.+++++.+.+
T Consensus       100 vigt~a~~~p~~~~~~~~~~  119 (232)
T PRK13586        100 VFSTIVFTNFNLFHDIVREI  119 (232)
T ss_pred             EECchhhCCHHHHHHHHHHh
Confidence            99999999999999987654

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=98.04  E-value=0.00022  Score=63.03  Aligned_cols=160  Identities=15%  Similarity=0.204  Sum_probs=93.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      +.++|...|+..+.+.++.+.+.|++.|.+-.        +++  . ...+.....+.++.+++.++.|+.|-+-..  +
T Consensus         6 ~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~--------~d~--~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~--d   72 (220)
T PRK05581          6 IAPSILSADFARLGEEVKAVEAAGADWIHVDV--------MDG--H-FVPNLTIGPPVVEAIRKVTKLPLDVHLMVE--N   72 (220)
T ss_pred             EEcchhcCCHHHHHHHHHHHHHcCCCEEEEeC--------ccC--C-cCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--C
Confidence            67889999999999999999999999999941        111  1 111212234556666655443433333321  1


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCcc--------cc--ccC---------------------------CCC-cCCCC
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNA--------FL--KKL---------------------------NPK-QNRKI  169 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~--~G~---------------------------~g~-~~~~~  169 (311)
                            ..+++..+.++|++.+++|+...        ..  .|.                           .+. .....
T Consensus        73 ------~~~~i~~~~~~g~d~v~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg  146 (220)
T PRK05581         73 ------PDRYVPDFAKAGADIITFHVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGG  146 (220)
T ss_pred             ------HHHHHHHHHHcCCCEEEEeeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCc
Confidence                  13445556688888888875420        00  000                           000 00011


Q ss_pred             CcCcHH---HHHHHHHhCC--C--CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         170 PILKYN---FVYNLKKDFP--E--LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       170 ~~~~~~---~i~~i~~~~~--~--ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      ...+|.   .+.++++..+  +  .+|..-|||+. +++.++++. +|+|.+|++++..+.....+
T Consensus       147 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~~~d~~~~~  211 (220)
T PRK05581        147 QKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAGADVFVAGSAVFGAPDYKEAI  211 (220)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcCCCEEEEChhhhCCCCHHHHH
Confidence            122343   3444444321  1  33557799998 899999866 99999999998877654433

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=98.03  E-value=2.4e-05  Score=71.12  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++|+.+++.|++.++|-.-.+   |         .+.+++.++++++ + ++||-..|||++ ++++++++. ||-|
T Consensus        44 dP~~~A~~~~~~Ga~~lHvVDLdg---g---------~~~n~~~i~~i~~-~-~~~vqvGGGIR~-e~i~~~l~~Ga~rV  108 (262)
T PLN02446         44 SAAEFAEMYKRDGLTGGHVIMLGA---D---------DASLAAALEALRA-Y-PGGLQVGGGVNS-ENAMSYLDAGASHV  108 (262)
T ss_pred             CHHHHHHHHHHCCCCEEEEEECCC---C---------CcccHHHHHHHHh-C-CCCEEEeCCccH-HHHHHHHHcCCCEE
Confidence            468999999999999999864332   1         1247899999999 7 699999999997 999999987 9999


Q ss_pred             EEehhhhhC----CcchHHhHhhh
Q psy2386         212 MLGREAYKN----PFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~----P~i~~~~~~~~  231 (311)
                      +||+.++.|    |.+++++.+.+
T Consensus       109 iigT~Av~~~~~~p~~v~~~~~~~  132 (262)
T PLN02446        109 IVTSYVFRDGQIDLERLKDLVRLV  132 (262)
T ss_pred             EEchHHHhCCCCCHHHHHHHHHHh
Confidence            999999999    99999988765

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=98.03  E-value=0.00016  Score=65.69  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .+.-..-++.+.+.|+|.||+=+-          +|..+-.+.+.+.+-++++++.++  .|+-|=+-.+.-.++  +..
T Consensus        82 t~~K~~Ea~~Ai~~GAdEiD~Vin----------ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~e--e~i  149 (257)
T PRK05283         82 IDIALAETRAAIAYGADEVDVVFP----------YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDE--ALI  149 (257)
T ss_pred             HHHHHHHHHHHHHcCCCEEeeecc----------HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCH--HHH
Confidence            333333344566779999998421          445555688999999999988764  444444444433322  125


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhhc
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNYI  208 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~a  208 (311)
                      ...++.+.++|+|+|-=      ..|+.+.      .+..+.++-+++..      .++-|=+.|||+|.+++.++++. 
T Consensus       150 ~~a~~~a~~aGADFVKT------STGf~~~------gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~a-  216 (257)
T PRK05283        150 RKASEIAIKAGADFIKT------STGKVPV------NATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLAL-  216 (257)
T ss_pred             HHHHHHHHHhCCCEEEc------CCCCCCC------CCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHH-
Confidence            67788889999999943      3344321      24555555555443      25789999999999999999864 


Q ss_pred             CEEEEehhhhhCCcch
Q psy2386         209 DGVMLGREAYKNPFLM  224 (311)
Q Consensus       209 dgVmigRa~l~~P~i~  224 (311)
                           |+-.+++-|+-
T Consensus       217 -----g~~~lg~~~~~  227 (257)
T PRK05283        217 -----ADEILGADWAD  227 (257)
T ss_pred             -----HHHHhChhhcC
Confidence                 33445555553

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=98.03  E-value=0.00019  Score=67.24  Aligned_cols=141  Identities=15%  Similarity=0.123  Sum_probs=97.3

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      .-+.+.+ |-.++++.++.++++. .++|.|-|-...               -+-+.+.+.++.+|+...-+..+|=.+.
T Consensus        96 ~~~~vsv-G~~~~d~er~~~L~~a~~~~d~iviD~Ah---------------Ghs~~~i~~ik~ir~~~p~~~viaGNV~  159 (343)
T TIGR01305        96 QNVAVSS-GSSDNDLEKMTSILEAVPQLKFICLDVAN---------------GYSEHFVEFVKLVREAFPEHTIMAGNVV  159 (343)
T ss_pred             ceEEEEe-ccCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHhhCCCCeEEEeccc
Confidence            3455655 7788889998887775 368887775322               1346788899999998754555553331


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCC
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIK  196 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~  196 (311)
                               +.+-++.|.++|+|.|.|.      ..|+...|.        +-+-+..+.++++..  .++|||+-|||+
T Consensus       160 ---------T~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gv--------g~pqltAv~~~a~aa~~~~v~VIaDGGIr  222 (343)
T TIGR01305       160 ---------TGEMVEELILSGADIVKVGIGPGSVCTTRTKTGV--------GYPQLSAVIECADAAHGLKGHIISDGGCT  222 (343)
T ss_pred             ---------CHHHHHHHHHcCCCEEEEcccCCCcccCceeCCC--------CcCHHHHHHHHHHHhccCCCeEEEcCCcC
Confidence                     2466888999999999864      122222331        112456666666543  268999999999


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.-|+.+.+.. ||+||+|.-+.+
T Consensus       223 ~~gDI~KALA~GAd~VMlG~llAG  246 (343)
T TIGR01305       223 CPGDVAKAFGAGADFVMLGGMFAG  246 (343)
T ss_pred             chhHHHHHHHcCCCEEEECHhhhC
Confidence            99999999987 999999954433

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=98.03  E-value=0.00023  Score=62.65  Aligned_cols=128  Identities=16%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      .+....-++.+.+.|+|.||+.+-          +|..+-.+.+.+.+-+.++++.+ +.|+.|=+-.+...   .+...
T Consensus        68 ~~~k~~eve~A~~~GAdevdvv~~----------~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~---~~~i~  134 (203)
T cd00959          68 TEVKVAEAREAIADGADEIDMVIN----------IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLT---DEEII  134 (203)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeec----------HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCC---HHHHH
Confidence            344555577788889999999632          23333345666677777777766 45554423333222   23567


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID  209 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad  209 (311)
                      ..++.+.++|+|+|...      .||.+      +++..+.++.+++.+ ..+||.++|||+|.+++.++++. |+
T Consensus       135 ~a~ria~e~GaD~IKTs------TG~~~------~~at~~~v~~~~~~~~~~v~ik~aGGikt~~~~l~~~~~g~~  198 (203)
T cd00959         135 KACEIAIEAGADFIKTS------TGFGP------GGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGAT  198 (203)
T ss_pred             HHHHHHHHhCCCEEEcC------CCCCC------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhChh
Confidence            78888999999999664      22221      124555555555443 25999999999999999999965 55

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.01  E-value=0.00013  Score=72.70  Aligned_cols=135  Identities=17%  Similarity=0.167  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      +++..+-++.+.++|+|.|+|-  +..             ...+.+.+.++.+++..+.++.|+.  |---      ..+
T Consensus       240 ~~~~~~ra~~Lv~aGvd~i~vd--~a~-------------g~~~~~~~~i~~ir~~~~~~~~V~a--GnV~------t~e  296 (502)
T PRK07107        240 TRDYAERVPALVEAGADVLCID--SSE-------------GYSEWQKRTLDWIREKYGDSVKVGA--GNVV------DRE  296 (502)
T ss_pred             hhhHHHHHHHHHHhCCCeEeec--Ccc-------------cccHHHHHHHHHHHHhCCCCceEEe--cccc------CHH
Confidence            3344444445666899999986  111             1234557888888887654455543  2111      246


Q ss_pred             HHHHHHHcCCCEEEE--ecCc-cccccCCCCcCCCCCcCcHHHHHHHHHhC-------C-CCeEEEecCCCCHHHHHHHH
Q psy2386         137 FVGTVSSAGCRTFIV--HARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDF-------P-ELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       137 ~~~~l~~~G~~~itv--h~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~-~ipvi~nGgI~s~~da~~~l  205 (311)
                      -++.+.++|+|+|.|  |+.. +..+     .+...+.+-+..+.+++++.       . ++|||+-|||++.-|+.+.|
T Consensus       297 ~a~~li~aGAd~I~vg~g~Gs~c~tr-----~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAl  371 (502)
T PRK07107        297 GFRYLAEAGADFVKVGIGGGSICITR-----EQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLAL  371 (502)
T ss_pred             HHHHHHHcCCCEEEECCCCCcCcccc-----cccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHH
Confidence            678888999999987  3321 0000     01112223455566555532       1 38999999999999999999


Q ss_pred             hh-cCEEEEehhhhh
Q psy2386         206 NY-IDGVMLGREAYK  219 (311)
Q Consensus       206 ~~-adgVmigRa~l~  219 (311)
                      .. ||+||+||.+-+
T Consensus       372 a~GA~~vm~G~~~ag  386 (502)
T PRK07107        372 AMGADFIMLGRYFAR  386 (502)
T ss_pred             HcCCCeeeeChhhhc
Confidence            87 999999999865

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.99  E-value=0.0006  Score=59.44  Aligned_cols=140  Identities=16%  Similarity=0.179  Sum_probs=95.7

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE-Eec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK-HRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK-iR~  123 (311)
                      +.|+++.+.-.++...  -++.+.++|+|+|-++.-.                .++.+.++++.+++. ++++.+- +..
T Consensus        53 ~~~i~~~~~v~~~~~~--~~~~~~~aGad~i~~h~~~----------------~~~~~~~~i~~~~~~-g~~~~v~~~~~  113 (202)
T cd04726          53 DKIIVADLKTADAGAL--EAEMAFKAGADIVTVLGAA----------------PLSTIKKAVKAAKKY-GKEVQVDLIGV  113 (202)
T ss_pred             CCEEEEEEEeccccHH--HHHHHHhcCCCEEEEEeeC----------------CHHHHHHHHHHHHHc-CCeEEEEEeCC
Confidence            6788888776777532  2355678999999998321                234567778887764 6665543 222


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                        ..      ..+..+ +.+.|+|++.++ +++....|         .+...+.++++++.. ++||.+.|||+ ++++.
T Consensus       114 --~t------~~e~~~-~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~~-~~~i~~~GGI~-~~~i~  173 (202)
T cd04726         114 --ED------PEKRAK-LLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKLL-GVKVAVAGGIT-PDTLP  173 (202)
T ss_pred             --CC------HHHHHH-HHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhhc-CCCEEEECCcC-HHHHH
Confidence              11      234444 777899999885 33321111         123567788888764 79999999995 99999


Q ss_pred             HHHhh-cCEEEEehhhhhCCcc
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i  223 (311)
                      ++++. +|+|.+|++++..+..
T Consensus       174 ~~~~~Gad~vvvGsai~~~~d~  195 (202)
T cd04726         174 EFKKAGADIVIVGRAITGAADP  195 (202)
T ss_pred             HHHhcCCCEEEEeehhcCCCCH
Confidence            99987 9999999999866553

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.98  E-value=2.9e-05  Score=77.74  Aligned_cols=92  Identities=11%  Similarity=0.128  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-----------HHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-----------KEI  201 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-----------~da  201 (311)
                      +.+++++.+.+.|+|.|++-.-++...+   .+   ....+++.|+++++.+ .+||...|||+|.           +++
T Consensus       268 dPve~a~~y~~~Gadel~~~Di~~~~~~---~~---~~~~~~~~i~~i~~~~-~ip~~vGGGIr~~~d~~~~~~~~~e~~  340 (538)
T PLN02617        268 KPVELAGQYYKDGADEVAFLNITGFRDF---PL---GDLPMLEVLRRASENV-FVPLTVGGGIRDFTDANGRYYSSLEVA  340 (538)
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCcCC---cc---cchhHHHHHHHHHhhC-CCCEEEcCCccccccccccccchHHHH
Confidence            4689999999999999998765541111   10   1123589999999998 8999999999998           668


Q ss_pred             HHHHhh-cCEEEEehhhhhCC------------cchHHhHhhh
Q psy2386         202 DLHLNY-IDGVMLGREAYKNP------------FLMSNFDLNY  231 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P------------~i~~~~~~~~  231 (311)
                      ++++.. ||-|.||++++.||            .+++++.+.+
T Consensus       341 ~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~f  383 (538)
T PLN02617        341 SEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVY  383 (538)
T ss_pred             HHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHc
Confidence            999987 99999999999975            8898888765

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.97  E-value=4.1e-05  Score=68.88  Aligned_cols=86  Identities=15%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-.-++. .|         .+.+.+.++++.+.+ .+||...|||+|.+|+++++.. |+-|.
T Consensus        37 p~~~a~~~~~~g~~~l~i~DLd~~-~~---------~~~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~Ga~~vi  105 (233)
T cd04723          37 PLDVARAYKELGFRGLYIADLDAI-MG---------RGDNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRGASRVI  105 (233)
T ss_pred             HHHHHHHHHHCCCCEEEEEeCccc-cC---------CCccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence            579999999999999998765542 12         135889999999987 7999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|+.++.| .++.++.+.+
T Consensus       106 igt~~~~~-~~~~~~~~~~  123 (233)
T cd04723         106 VGTETLPS-DDDEDRLAAL  123 (233)
T ss_pred             Ecceeccc-hHHHHHHHhc
Confidence            99999999 9998887765

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=97.92  E-value=0.00024  Score=66.51  Aligned_cols=140  Identities=13%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      -+.+.+ |-.++++.++.++++. .|+|.|-|-...               -+-+.+.++++.+|+.. +.+|.+    |
T Consensus        98 ~~~vav-G~~~~d~er~~~L~~~~~g~D~iviD~Ah---------------Ghs~~~i~~ik~ik~~~P~~~vIa----G  157 (346)
T PRK05096         98 HVMVST-GTSDADFEKTKQILALSPALNFICIDVAN---------------GYSEHFVQFVAKAREAWPDKTICA----G  157 (346)
T ss_pred             eEEEEe-cCCHHHHHHHHHHHhcCCCCCEEEEECCC---------------CcHHHHHHHHHHHHHhCCCCcEEE----e
Confidence            355555 7788999999988874 789988776322               13477889999999876 556554    2


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCeEEEecCC
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELEIIINGGI  195 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ipvi~nGgI  195 (311)
                      --      .+.+.++.|.++|+|.|.|-      +.|+.-.|.. .       +-+..|.++   +... ++|||+-|||
T Consensus       158 NV------~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG-~-------PQltAV~~~a~~a~~~-gvpiIADGGi  222 (346)
T PRK05096        158 NV------VTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVG-Y-------PQLSAVIECADAAHGL-GGQIVSDGGC  222 (346)
T ss_pred             cc------cCHHHHHHHHHcCCCEEEEcccCCccccCccccccC-h-------hHHHHHHHHHHHHHHc-CCCEEecCCc
Confidence            11      13577889999999999763      1222122211 1       233444443   3444 7999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      ++.-|+.+.|.. ||.||+|+-+-+..
T Consensus       223 ~~sGDI~KAlaaGAd~VMlGsllAGt~  249 (346)
T PRK05096        223 TVPGDVAKAFGGGADFVMLGGMLAGHE  249 (346)
T ss_pred             ccccHHHHHHHcCCCEEEeChhhcCcc
Confidence            999999999986 99999998875543

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.89  E-value=0.00045  Score=61.30  Aligned_cols=147  Identities=18%  Similarity=0.239  Sum_probs=98.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----cccC-------cccCcccCChHHHHHHHHH----
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQNG-------FFGAILMTKPLLVSDCIKA----  108 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v~~~-------~~G~~Ll~~~~~~~~iv~~----  108 (311)
                      ..+++.=|.+.++++....++.+.+.|+..|||-+-.|..-     .++.       -.|+.=..+++.+.+.+++    
T Consensus        12 ~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~F   91 (213)
T PRK06552         12 ANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQF   91 (213)
T ss_pred             HCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCE
Confidence            45777778899999999999999999999999987766321     1110       1233333455554433332    


Q ss_pred             -------------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386         109 -------------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus       109 -------------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                                   .++ .++|+.-    |..   +   ..| +....++|+|+|.+.+...               ...+
T Consensus        92 ivsP~~~~~v~~~~~~-~~i~~iP----G~~---T---~~E-~~~A~~~Gad~vklFPa~~---------------~G~~  144 (213)
T PRK06552         92 IVSPSFNRETAKICNL-YQIPYLP----GCM---T---VTE-IVTALEAGSEIVKLFPGST---------------LGPS  144 (213)
T ss_pred             EECCCCCHHHHHHHHH-cCCCEEC----CcC---C---HHH-HHHHHHcCCCEEEECCccc---------------CCHH
Confidence                         211 1222211    111   1   123 3344579999998865321               2357


Q ss_pred             HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +++.++..+|++|+++.|||+ .+.+.++++. +++|.+|+.++.
T Consensus       145 ~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~  188 (213)
T PRK06552        145 FIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNK  188 (213)
T ss_pred             HHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhC
Confidence            799999988889999999998 6999999987 999999999853

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=97.89  E-value=0.00057  Score=60.72  Aligned_cols=153  Identities=13%  Similarity=0.194  Sum_probs=94.6

Q ss_pred             hccccCC-CCCCeEEEecC-CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386          37 HCLDFNA-EEHPIAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV  113 (311)
Q Consensus        37 ~~l~~~~-~~~p~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~  113 (311)
                      .++++-+ ..-.+..+-.| .+.++-...|+++.+. |-++|-|-       |..+  .-.|+-||-...+-.+.+.+. 
T Consensus        53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLE-------Vi~D--~~~L~PD~~etl~Aae~Lv~e-  122 (247)
T PF05690_consen   53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLE-------VIGD--DKTLLPDPIETLKAAEILVKE-  122 (247)
T ss_dssp             HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE---------BS---TTT--B-HHHHHHHHHHHHHT-
T ss_pred             cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEE-------EeCC--CCCcCCChhHHHHHHHHHHHC-
Confidence            4555433 45556777766 4789999999999886 45777664       1222  224666766555555555443 


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      +.-|.-=+.     ++     .-++++|++.|+..|-.-|-.-   | |     -.+..+...++.+.+.. ++|||.-+
T Consensus       123 GF~VlPY~~-----~D-----~v~akrL~d~GcaavMPlgsPI---G-S-----g~Gi~n~~~l~~i~~~~-~vPvIvDA  182 (247)
T PF05690_consen  123 GFVVLPYCT-----DD-----PVLAKRLEDAGCAAVMPLGSPI---G-S-----GRGIQNPYNLRIIIERA-DVPVIVDA  182 (247)
T ss_dssp             T-EEEEEE------S------HHHHHHHHHTT-SEBEEBSSST---T-T--------SSTHHHHHHHHHHG-SSSBEEES
T ss_pred             CCEEeecCC-----CC-----HHHHHHHHHCCCCEEEeccccc---c-c-----CcCCCCHHHHHHHHHhc-CCcEEEeC
Confidence            444444332     12     3589999999999997654321   0 0     11335778899999888 89999999


Q ss_pred             CCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         194 GIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       194 gI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ||.+++|+.+.++. ||+|++.++...
T Consensus       183 GiG~pSdaa~AMElG~daVLvNTAiA~  209 (247)
T PF05690_consen  183 GIGTPSDAAQAMELGADAVLVNTAIAK  209 (247)
T ss_dssp             ---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred             CCCCHHHHHHHHHcCCceeehhhHHhc
Confidence            99999999999997 999999998743

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=97.88  E-value=7.5e-05  Score=65.31  Aligned_cols=153  Identities=13%  Similarity=0.099  Sum_probs=104.7

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe-ccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL-NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi-N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKi  121 (311)
                      ..-|+-|  .+-+|+.|..|.    ++|+|.||| |+-|=+..        ...-..+.+.++.+..|+-+ ++|++|-+
T Consensus        60 s~lPICV--SaVep~~f~~aV----~AGAdliEIGNfDsFY~q--------Gr~f~a~eVL~Lt~~tR~LLP~~~LsVTV  125 (242)
T PF04481_consen   60 SNLPICV--SAVEPELFVAAV----KAGADLIEIGNFDSFYAQ--------GRRFSAEEVLALTRETRSLLPDITLSVTV  125 (242)
T ss_pred             CCCCeEe--ecCCHHHHHHHH----HhCCCEEEecchHHHHhc--------CCeecHHHHHHHHHHHHHhCCCCceEEec
Confidence            3567666  478999998776    689999999 44443332        11235677888888888876 67888876


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc---cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~---~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                      ..-..-+    +=++++..|++.|+|.|.-.|.+..   ..|..|--+...  .-+...+.+.+.+ ++||+..-|+.+.
T Consensus       126 PHiL~ld----~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~lglIekaa--pTLAaay~ISr~v-~iPVlcASGlS~v  198 (242)
T PF04481_consen  126 PHILPLD----QQVQLAEDLVKAGADIIQTEGGTSSKPTSPGILGLIEKAA--PTLAAAYAISRAV-SIPVLCASGLSAV  198 (242)
T ss_pred             CccccHH----HHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchHHHHHHHh--HHHHHHHHHHhcc-CCceEeccCcchh
Confidence            6433322    3478999999999999987776641   112111100001  1345567788887 8999999999887


Q ss_pred             HHHHHHHhhcCEEEEehhh
Q psy2386         199 KEIDLHLNYIDGVMLGREA  217 (311)
Q Consensus       199 ~da~~~l~~adgVmigRa~  217 (311)
                      .-=..+..+|.||-||++.
T Consensus       199 T~PmAiaaGAsGVGVGSav  217 (242)
T PF04481_consen  199 TAPMAIAAGASGVGVGSAV  217 (242)
T ss_pred             hHHHHHHcCCcccchhHHh
Confidence            6666666669999999886

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=97.88  E-value=0.00061  Score=61.10  Aligned_cols=154  Identities=21%  Similarity=0.313  Sum_probs=100.9

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      -+.++|...|+..+.+-.+.+++.|+|.+-+-  =|.=+|+.   .+|          -++++++++.. ++|+.+|+-+
T Consensus         8 ~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~---~~G----------~~~v~~lr~~~~~~~lDvHLm~   74 (228)
T PTZ00170          8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNL---SFG----------PPVVKSLRKHLPNTFLDCHLMV   74 (228)
T ss_pred             EEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc---CcC----------HHHHHHHHhcCCCCCEEEEECC
Confidence            36788999999999999999999998865443  23222221   122          35577777776 8899999873


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc-----------cccC------CCC---cC-----------------
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-----------LKKL------NPK---QN-----------------  166 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-----------~~G~------~g~---~~-----------------  166 (311)
                        ++      ...+++.+.++|+|.+|+|.-...           ..|.      .+.   +.                 
T Consensus        75 --~~------p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~  146 (228)
T PTZ00170         75 --SN------PEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMT  146 (228)
T ss_pred             --CC------HHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhh
Confidence              11      346778889999999999954210           0010      000   00                 


Q ss_pred             -------CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         167 -------RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       167 -------~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                             ..-.+..++.++++++..+...+..-|||+- +.+..+.+. +|.+++||+++..+.
T Consensus       147 v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~a~d  209 (228)
T PTZ00170        147 VEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSSIFKAKD  209 (228)
T ss_pred             cccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHHhCCCC
Confidence                   0000011355667777655577888999985 677777765 999999999876554

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.86  E-value=0.001  Score=59.76  Aligned_cols=135  Identities=13%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             CCCHHHHHHHHHHHHHcC-------CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          54 DNEPKKLAKSAKIIQKWG-------YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g-------~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      ..+.++-.+.|+++.+.+       -++|-|-       |..+  --.|+-|+-...+-.+.+.+. +.-|..-     .
T Consensus        80 c~tA~EAv~~A~laRe~~~~~~~~~~~wIKLE-------Vi~D--~~~LlPD~~etl~Aae~Lv~e-GF~VlPY-----~  144 (267)
T CHL00162         80 CQTAEEAIRMAFLGRELAKQLGQEDNNFVKLE-------VISD--PKYLLPDPIGTLKAAEFLVKK-GFTVLPY-----I  144 (267)
T ss_pred             CCCHHHHHHHHHHHHHHhccccccCCCeEEEE-------EeCC--CcccCCChHHHHHHHHHHHHC-CCEEeec-----C
Confidence            356788888898888864       4666554       1111  134777776655555555443 4444332     2


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                      .++     .-++++|++.|+..|-.-|-.-   | |     -.+..+...++.+.+.. ++||+.-+||.+++|+.+.++
T Consensus       145 ~~D-----~v~a~rLed~Gc~aVMPlgsPI---G-S-----g~Gl~n~~~l~~i~e~~-~vpVivdAGIgt~sDa~~AmE  209 (267)
T CHL00162        145 NAD-----PMLAKHLEDIGCATVMPLGSPI---G-S-----GQGLQNLLNLQIIIENA-KIPVIIDAGIGTPSEASQAME  209 (267)
T ss_pred             CCC-----HHHHHHHHHcCCeEEeeccCcc---c-C-----CCCCCCHHHHHHHHHcC-CCcEEEeCCcCCHHHHHHHHH
Confidence            222     3589999999999997643321   0 0     11234777888888885 799999999999999999999


Q ss_pred             h-cCEEEEehhhh
Q psy2386         207 Y-IDGVMLGREAY  218 (311)
Q Consensus       207 ~-adgVmigRa~l  218 (311)
                      . ||||++.+|..
T Consensus       210 lGaDgVL~nSaIa  222 (267)
T CHL00162        210 LGASGVLLNTAVA  222 (267)
T ss_pred             cCCCEEeecceee
Confidence            7 99999999985

>KOG0538|consensus

Probab=97.85  E-value=0.00029  Score=64.62  Aligned_cols=131  Identities=16%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                      ||.+-=+=++.+++.++.|+.||==+.          .|=+..+.++|++.|+|+  |..+ + .        -.|+..+
T Consensus       207 d~Sl~W~Di~wLr~~T~LPIvvKGilt----------~eDA~~Ave~G~~GIIVSNHGgRQ-l-D--------~vpAtI~  266 (363)
T KOG0538|consen  207 DPSLSWKDIKWLRSITKLPIVVKGVLT----------GEDARKAVEAGVAGIIVSNHGGRQ-L-D--------YVPATIE  266 (363)
T ss_pred             CCCCChhhhHHHHhcCcCCeEEEeecc----------cHHHHHHHHhCCceEEEeCCCccc-c-C--------cccchHH
Confidence            344444556778888899999993321          122566789999999995  3321 1 1        1246778


Q ss_pred             HHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHH
Q psy2386         176 FVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILY  253 (311)
Q Consensus       176 ~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
                      .+.++.+++. +|||+.-|||++..|+.+.|+. |.+|.+||+.+..-..        .|      ..-.+++++.+.+-
T Consensus       267 ~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~--------~G------e~GV~~vl~iL~~e  332 (363)
T KOG0538|consen  267 ALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAA--------KG------EAGVKKVLDILRDE  332 (363)
T ss_pred             HHHHHHHHhcCceEEEEecCcccchHHHHHHhcccceEEecCchheeecc--------cc------chhHHHHHHHHHHH
Confidence            8888888763 4999999999999999999987 9999999987553221        12      23356788888877


Q ss_pred             HHHHHh-cCC
Q psy2386         254 IRQQLN-NNK  262 (311)
Q Consensus       254 ~~~~~~-~g~  262 (311)
                      ++..+. .|.
T Consensus       333 fe~tmaLsGc  342 (363)
T KOG0538|consen  333 FELTMALSGC  342 (363)
T ss_pred             HHHHHHHhCC
Confidence            776666 664

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=97.84  E-value=0.0014  Score=57.58  Aligned_cols=178  Identities=10%  Similarity=0.140  Sum_probs=103.7

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEeccee----ccccc-CCchhccccCCC-CCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFT----TQAIL-GNKKHCLDFNAE-EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI   75 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~----a~~l~-~~~~~~l~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~I   75 (311)
                      |+|+..-=..|.+.|+.   |-.++.    .+.+- ....++.+..+. -.++.+ +...+++.+.   +++.+.|+|+|
T Consensus         5 Gi~~~ed~~~a~~~Gvd---~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v-~vn~~~~~i~---~ia~~~~~d~V   77 (203)
T cd00405           5 GITTLEDALAAAEAGAD---AIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGV-FVNEDLEEIL---EIAEELGLDVV   77 (203)
T ss_pred             CCCCHHHHHHHHHcCCC---EEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEE-EeCCCHHHHH---HHHHhcCCCEE
Confidence            66777766777778742   333332    22220 111122222322 123333 2244555554   44557899999


Q ss_pred             EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386          76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus        76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      .||-.                .+++.    ++.+++..+.++...+...  ...    ..+. ......|+|++.+...+
T Consensus        78 qlhg~----------------e~~~~----~~~l~~~~~~~~i~~i~~~--~~~----~~~~-~~~~~~~aD~il~dt~~  130 (203)
T cd00405          78 QLHGD----------------ESPEY----CAQLRARLGLPVIKAIRVK--DEE----DLEK-AAAYAGEVDAILLDSKS  130 (203)
T ss_pred             EECCC----------------CCHHH----HHHHHhhcCCcEEEEEecC--Chh----hHHH-hhhccccCCEEEEcCCC
Confidence            99811                12333    4455555566665434442  211    1122 23345789999887655


Q ss_pred             cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcc
Q psy2386         156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFL  223 (311)
Q Consensus       156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i  223 (311)
                      ....|-+|      .+.+|+.+++++  . ++|+++.||| |++.+.++++.  ++||-+.+++...|-.
T Consensus       131 ~~~~Gg~g------~~~~~~~l~~~~--~-~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~  190 (203)
T cd00405         131 GGGGGGTG------KTFDWSLLRGLA--S-RKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGI  190 (203)
T ss_pred             CCCCCCCc------ceEChHHhhccc--c-CCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCC
Confidence            32112122      247999998887  4 6999999999 99999999975  8999999999877654

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.84  E-value=0.00097  Score=57.97  Aligned_cols=147  Identities=16%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----------cccCcccCcccCChHHHHHHHHH-----
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----------VQNGFFGAILMTKPLLVSDCIKA-----  108 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----------v~~~~~G~~Ll~~~~~~~~iv~~-----  108 (311)
                      ..+++.=|.+.++++..+.++.+.+.|++.|++-+--|...           .+..+.|.-+ .+ +.+...++.     
T Consensus        11 ~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl-~~-d~~~~A~~~gAdgv   88 (187)
T PRK07455         11 QHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTIL-TL-EDLEEAIAAGAQFC   88 (187)
T ss_pred             hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEE-cH-HHHHHHHHcCCCEE
Confidence            45777778899999999999999999999999965433111           1112222222 21 333332221     


Q ss_pred             -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386         109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                                 +++..+++    .-+| .  .+   ..| +....+.|+|+|-+++-..              ..-.+++
T Consensus        89 ~~p~~~~~~~~~~~~~~~~----~i~G-~--~t---~~e-~~~A~~~Gadyv~~Fpt~~--------------~~G~~~l  143 (187)
T PRK07455         89 FTPHVDPELIEAAVAQDIP----IIPG-A--LT---PTE-IVTAWQAGASCVKVFPVQA--------------VGGADYI  143 (187)
T ss_pred             ECCCCCHHHHHHHHHcCCC----EEcC-c--CC---HHH-HHHHHHCCCCEEEECcCCc--------------ccCHHHH
Confidence                       01111222    1134 1  11   223 4556678999998854211              1246889


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ++++..+|++|+++.||| |++++.++++. +++|.++++++.
T Consensus       144 ~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~~  185 (187)
T PRK07455        144 KSLQGPLGHIPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLFP  185 (187)
T ss_pred             HHHHhhCCCCcEEEeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence            999998877999999999 67999999987 999999998864

>PRK04302 triosephosphate isomerase; Provisional

Probab=97.83  E-value=0.0013  Score=58.78  Aligned_cols=155  Identities=15%  Similarity=0.146  Sum_probs=91.7

Q ss_pred             CCCeEEEecCCCH---HHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          45 EHPIAFQVGDNEP---KKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql~g~~~---~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      +-|++.|=.-...   ..=...++.+.++|+|+|=+.-. ..              ..++.+.+.++..++. ++.+.+ 
T Consensus        56 ~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~--------------~~~~e~~~~v~~a~~~-Gl~~I~-  119 (223)
T PRK04302         56 DIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERR--------------LTLADIEAVVERAKKL-GLESVV-  119 (223)
T ss_pred             CCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccc--------------cCHHHHHHHHHHHHHC-CCeEEE-
Confidence            4678877543221   11113367778899999988632 00              1123466777776663 654434 


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                       -.+    +     .+-++.+.+.|.+.|-+-+|-.  .|..-......+...-+.++.+++..+++||++-|||.++++
T Consensus       120 -~v~----~-----~~~~~~~~~~~~~~I~~~p~~~--igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~  187 (223)
T PRK04302        120 -CVN----N-----PETSAAAAALGPDYVAVEPPEL--IGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED  187 (223)
T ss_pred             -EcC----C-----HHHHHHHhcCCCCEEEEeCccc--cccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence             221    1     1234456778899998876632  121000000111111234455665444699999999999999


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      +..+++. +|||.||++++.-+.....+
T Consensus       188 ~~~~~~~gadGvlVGsa~l~~~~~~~~~  215 (223)
T PRK04302        188 VKAALELGADGVLLASGVVKAKDPEAAL  215 (223)
T ss_pred             HHHHHcCCCCEEEEehHHhCCcCHHHHH
Confidence            9999966 99999999999776644433

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=97.82  E-value=0.0018  Score=62.41  Aligned_cols=140  Identities=12%  Similarity=0.169  Sum_probs=100.5

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE-Ee
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK-HR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK-iR  122 (311)
                      .+.++.+-|.-.|+..+.  ++.+.++|+|.+-+|...+                .+.+.+.++++++. ++-+.+- +.
T Consensus       225 ~~~~I~~DLK~~Di~~~v--v~~~a~aGAD~vTVH~ea~----------------~~ti~~ai~~akk~-GikvgVD~ln  285 (391)
T PRK13307        225 PDAFIVADLKTLDTGNLE--ARMAADATADAVVISGLAP----------------ISTIEKAIHEAQKT-GIYSILDMLN  285 (391)
T ss_pred             CCCeEEEEecccChhhHH--HHHHHhcCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCEEEEEEcC
Confidence            357899999999999886  6667799999999994322                23466777777774 5444442 22


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .    .+    ..+.++.+ ..++|.+.+|. ...  ++        . ..-|+.++++++...+++|...|||. .+++
T Consensus       286 p----~t----p~e~i~~l-~~~vD~Vllht~vdp--~~--------~-~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti  344 (391)
T PRK13307        286 V----ED----PVKLLESL-KVKPDVVELHRGIDE--EG--------T-EHAWGNIKEIKKAGGKILVAVAGGVR-VENV  344 (391)
T ss_pred             C----CC----HHHHHHHh-hCCCCEEEEccccCC--Cc--------c-cchHHHHHHHHHhCCCCcEEEECCcC-HHHH
Confidence            1    11    24566666 67899999995 332  11        1 12577888888754478999999999 8899


Q ss_pred             HHHHhh-cCEEEEehhhhhCCcc
Q psy2386         202 DLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      .++++. +|.+.+||+++..+..
T Consensus       345 ~~l~~aGADivVVGsaIf~a~Dp  367 (391)
T PRK13307        345 EEALKAGADILVVGRAITKSKDV  367 (391)
T ss_pred             HHHHHcCCCEEEEeHHHhCCCCH
Confidence            988876 9999999998765553

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=97.80  E-value=0.0006  Score=60.41  Aligned_cols=56  Identities=16%  Similarity=0.204  Sum_probs=46.2

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      .|..-+.++++++.   .|+|..|||+|+++++++.+. ||.|.+|..+..+|.-+.++.
T Consensus       178 ~Pv~~e~v~~v~~~---~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~~~~~~~v  234 (240)
T COG1646         178 DPVPVEMVSRVLSD---TPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDPDKALETV  234 (240)
T ss_pred             CCcCHHHHHHhhcc---ceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCHHHHHHHH
Confidence            35566777777654   499999999999999999985 999999999999996555544

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=97.80  E-value=0.00079  Score=61.24  Aligned_cols=131  Identities=16%  Similarity=0.227  Sum_probs=91.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      ||-++.+|.    .+|+|+|=|..+.               -.++.+.++++...+ .+.-+-|-++.          ..
T Consensus       120 d~~QI~eA~----~~GADaVLLI~~~---------------L~~~~l~~l~~~a~~-lGle~lVEVh~----------~~  169 (254)
T PF00218_consen  120 DPYQIYEAR----AAGADAVLLIAAI---------------LSDDQLEELLELAHS-LGLEALVEVHN----------EE  169 (254)
T ss_dssp             SHHHHHHHH----HTT-SEEEEEGGG---------------SGHHHHHHHHHHHHH-TT-EEEEEESS----------HH
T ss_pred             CHHHHHHHH----HcCCCEeehhHHh---------------CCHHHHHHHHHHHHH-cCCCeEEEECC----------HH
Confidence            445444433    5799999887332               245667788777665 57777776653          12


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      | ++.+.++|++.|-|..|.-  ..+         ..|++...++...+| ++.+|+-+||.|++|+..+... +|||.|
T Consensus       170 E-l~~al~~~a~iiGINnRdL--~tf---------~vd~~~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLV  237 (254)
T PF00218_consen  170 E-LERALEAGADIIGINNRDL--KTF---------EVDLNRTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLV  237 (254)
T ss_dssp             H-HHHHHHTT-SEEEEESBCT--TTC---------CBHTHHHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEE
T ss_pred             H-HHHHHHcCCCEEEEeCccc--cCc---------ccChHHHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEE
Confidence            3 4455689999999999873  222         257787888887765 5789999999999999999987 999999


Q ss_pred             ehhhhhCCcchHHhH
Q psy2386         214 GREAYKNPFLMSNFD  228 (311)
Q Consensus       214 gRa~l~~P~i~~~~~  228 (311)
                      |++++..|..-..+.
T Consensus       238 Ge~lm~~~d~~~~~~  252 (254)
T PF00218_consen  238 GEALMRSPDPGEALR  252 (254)
T ss_dssp             SHHHHTSSSHHHHHH
T ss_pred             CHHHhCCCCHHHHHh
Confidence            999999998766554

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=97.79  E-value=0.0025  Score=57.67  Aligned_cols=142  Identities=13%  Similarity=0.217  Sum_probs=98.0

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .|+...=|=-||.++.+|.    .+|+|+|=|.+.              + .+++.+.++++...+ ++.-+.|-++.  
T Consensus       103 ~PvL~KDFIid~~QI~ea~----~~GADavLLI~~--------------~-L~~~~l~~l~~~a~~-lGle~LVEVh~--  160 (247)
T PRK13957        103 IPVLRKDFILDEIQIREAR----AFGASAILLIVR--------------I-LTPSQIKSFLKHASS-LGMDVLVEVHT--  160 (247)
T ss_pred             CCEEeccccCCHHHHHHHH----HcCCCEEEeEHh--------------h-CCHHHHHHHHHHHHH-cCCceEEEECC--
Confidence            4555544445555555444    367888866521              1 245566777766555 57766676553  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~  204 (311)
                               .+=+++..++|++.|-|..|.-  ..+         ..|.+...++...+| +..+|+-+||.|++|+..+
T Consensus       161 ---------~~El~~a~~~ga~iiGINnRdL--~t~---------~vd~~~~~~L~~~ip~~~~~IsESGI~t~~d~~~l  220 (247)
T PRK13957        161 ---------EDEAKLALDCGAEIIGINTRDL--DTF---------QIHQNLVEEVAAFLPPNIVKVGESGIESRSDLDKF  220 (247)
T ss_pred             ---------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eECHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHHH
Confidence                     1224556778999999988863  221         257788888888776 4678999999999999998


Q ss_pred             HhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         205 LNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       205 l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ...+|||.||.+++..+.....+++
T Consensus       221 ~~~~davLvG~~lm~~~d~~~~~~~  245 (247)
T PRK13957        221 RKLVDAALIGTYFMEKKDIRKAWLS  245 (247)
T ss_pred             HHhCCEEEECHHHhCCCCHHHHHHH
Confidence            7669999999999999987665543

>PRK08227 autoinducer 2 aldolase; Validated

Probab=97.79  E-value=0.0018  Score=59.25  Aligned_cols=147  Identities=11%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             CCCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEE--eccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386          44 EEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEIN--LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        44 ~~~p~~~Ql~g~~-------~~~~~~aa~~~~~~g~d~Id--iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~  114 (311)
                      .+.|++++|.+++       .+.+.-..+.+.+.|+|+|-  +|.|.+...           +..+.+.+++++..+ .+
T Consensus        73 ~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~-----------~~l~~l~~v~~ea~~-~G  140 (264)
T PRK08227         73 TNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEH-----------QSIKNIIQLVDAGLR-YG  140 (264)
T ss_pred             CCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHHH-hC
Confidence            4578999999853       23344445667788998754  566643221           123445566666554 48


Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      +|+.+=...|-...++.+.+.-.++...+.|+|.|.+-               |.   . +..+++.+.. .+||+..||
T Consensus       141 ~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~---------------y~---~-~~f~~vv~a~-~vPVviaGG  200 (264)
T PRK08227        141 MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY---------------YV---E-EGFERITAGC-PVPIVIAGG  200 (264)
T ss_pred             CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC---------------CC---H-HHHHHHHHcC-CCcEEEeCC
Confidence            99887333343222333334455677779999999542               11   1 4466777777 599998888


Q ss_pred             CC-CHHHHHHHHh----h-cCEEEEehhhhhCCc
Q psy2386         195 IK-TKKEIDLHLN----Y-IDGVMLGREAYKNPF  222 (311)
Q Consensus       195 I~-s~~da~~~l~----~-adgVmigRa~l~~P~  222 (311)
                      =. +.+++.++..    . |.||.+||=.+..|.
T Consensus       201 ~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~  234 (264)
T PRK08227        201 KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEH  234 (264)
T ss_pred             CCCCHHHHHHHHHHHHHcCCceeeechhhhccCC
Confidence            77 4455665554    2 999999999988766

>KOG2334|consensus

Probab=97.77  E-value=4.9e-06  Score=78.95  Aligned_cols=133  Identities=13%  Similarity=0.211  Sum_probs=108.1

Q ss_pred             EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec
Q psy2386          74 EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus        74 ~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~  153 (311)
                      ..++|++||..+....+.+.+++..+..+..+.+..++..+.|+ .|.|+-.+..+    ..++++.+++.+  .+.+|+
T Consensus       289 l~~~~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~~d----~~~~~~~le~~~--~l~i~~  361 (477)
T KOG2334|consen  289 LRGIQEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSPAD----TVNLAERLEDLS--ALAIHG  361 (477)
T ss_pred             hhhhhccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCcch----hhhHhhhHHhcc--chhhhh
Confidence            47889999999999999999999999999999999999999998 89998766544    478999999988  667787


Q ss_pred             CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         154 RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       154 Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      |..        ..+..-|+.|+.++...... .+|+++||++-...+-   .+. +..||..++...+-.++.
T Consensus       362 r~~--------f~r~~~pa~~~~~k~~l~~~-~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~  422 (477)
T KOG2334|consen  362 RKI--------FDRPTDPAKWDTPKMVLADL-CVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWS  422 (477)
T ss_pred             ccc--------ccccCCCcCCCCHHHHHHHh-hhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccC
Confidence            753        22334467899888888777 6999999999887775   222 788888999887777653

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=97.77  E-value=0.00073  Score=65.52  Aligned_cols=81  Identities=10%  Similarity=0.067  Sum_probs=54.8

Q ss_pred             HHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHhh
Q psy2386         136 DFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       136 e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      +-++.+++.| +|.|++. ..  .+|..|..   ....-+..+.++++.+       .++||++.|||.|++++..++..
T Consensus       167 ~eA~~A~~~g~aD~Ivvq-~E--AGGH~g~~---~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~al  240 (418)
T cd04742         167 EQAELARRVPVADDITVE-AD--SGGHTDNR---PLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFAL  240 (418)
T ss_pred             HHHHHHHhCCCCCEEEEc-cc--CCCCCCCc---cHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHc
Confidence            3345555666 6999996 32  45554321   1111234455554443       14999999999999999999987


Q ss_pred             -cCEEEEehhhhhCCc
Q psy2386         208 -IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 -adgVmigRa~l~~P~  222 (311)
                       ||+|++|+.++.-+.
T Consensus       241 GAd~V~~GT~flat~E  256 (418)
T cd04742         241 GADFIVTGSINQCTVE  256 (418)
T ss_pred             CCcEEeeccHHHhCcc
Confidence             999999999987654

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=97.77  E-value=0.00054  Score=61.88  Aligned_cols=109  Identities=9%  Similarity=0.133  Sum_probs=79.3

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      ..|+++=+   +|.+|+...+.++.+.++|+++|.|-=+                   ....+.+++++++ ++||..  
T Consensus        73 ~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~-------------------~~~~~~i~ai~~a-~i~Via--  130 (240)
T cd06556          73 LALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG-------------------EWHIETLQMLTAA-AVPVIA--  130 (240)
T ss_pred             CCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc-------------------HHHHHHHHHHHHc-CCeEEE--
Confidence            35788766   3567788889999888899999999522                   1234556677665 477765  


Q ss_pred             eccCCC---------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC
Q psy2386         122 RIGIDD---------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE  186 (311)
Q Consensus       122 R~g~~~---------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~  186 (311)
                      |++...               .+..++.++-++.++++|+|.|.+++.                  +.+.++++.+.+ +
T Consensus       131 Rtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~------------------~~e~~~~i~~~~-~  191 (240)
T cd06556         131 HTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV------------------PVELAKQITEAL-A  191 (240)
T ss_pred             EeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC------------------CHHHHHHHHHhC-C
Confidence            444311               123456788899999999999998744                  457899999998 7


Q ss_pred             CeEEEecC
Q psy2386         187 LEIIINGG  194 (311)
Q Consensus       187 ipvi~nGg  194 (311)
                      +|+++||.
T Consensus       192 ~P~~~~ga  199 (240)
T cd06556         192 IPLAGIGA  199 (240)
T ss_pred             CCEEEEec
Confidence            99999874

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=97.74  E-value=0.0012  Score=64.57  Aligned_cols=125  Identities=14%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS  143 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~  143 (311)
                      ++.+.++|+|+|-+....                +...+.++++.+++ .+.++.+-+   ....+    ..+.++.+.+
T Consensus        74 v~~a~~aGAdgV~v~g~~----------------~~~~~~~~i~~a~~-~G~~~~~g~---~s~~t----~~e~~~~a~~  129 (430)
T PRK07028         74 VEMAAKAGADIVCILGLA----------------DDSTIEDAVRAARK-YGVRLMADL---INVPD----PVKRAVELEE  129 (430)
T ss_pred             HHHHHHcCCCEEEEecCC----------------ChHHHHHHHHHHHH-cCCEEEEEe---cCCCC----HHHHHHHHHh
Confidence            345667889988876211                11224567777776 466665532   11111    2455778889


Q ss_pred             cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .|+|+|.++.-..      +.   ..++..++.++++++.+ ++||++-||| +.+.+.++++. +|+|.+||+++..+.
T Consensus       130 ~GaD~I~~~pg~~------~~---~~~~~~~~~l~~l~~~~-~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d  198 (430)
T PRK07028        130 LGVDYINVHVGID------QQ---MLGKDPLELLKEVSEEV-SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKSAD  198 (430)
T ss_pred             cCCCEEEEEeccc------hh---hcCCChHHHHHHHHhhC-CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCCCC
Confidence            9999998874321      00   01123468899999887 6999999999 68999999887 999999999998766


Q ss_pred             c
Q psy2386         223 L  223 (311)
Q Consensus       223 i  223 (311)
                      .
T Consensus       199 ~  199 (430)
T PRK07028        199 V  199 (430)
T ss_pred             H
Confidence            4

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=97.74  E-value=6.6e-05  Score=71.51  Aligned_cols=141  Identities=16%  Similarity=0.195  Sum_probs=87.8

Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~  174 (311)
                      .+|-.+.|-+..+++.+..|+.+|   |...      ..+ +..+-+.|++.|.++  +...+..|          +.-.
T Consensus       201 ~~P~i~ked~~~i~~~~~~~lv~k---GV~~------~~D-~~~a~~tg~~~I~vsnhggrqlD~g----------~st~  260 (360)
T COG1304         201 SVPVISKEDGAGISKEWAGPLVLK---GILA------PED-AAGAGGTGADGIEVSNHGGRQLDWG----------ISTA  260 (360)
T ss_pred             CCCcccHHHHhHHHHhcCCcHHHh---CCCC------HHH-HHhhccCCceEEEEEcCCCccccCC----------CChH
Confidence            344455555555555555555444   3222      112 455677889999884  33222222          2345


Q ss_pred             HHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHH
Q psy2386         175 NFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMIL  252 (311)
Q Consensus       175 ~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (311)
                      +.+.++++.+++ +||++.|||+|..|+.++++. ||+|++||+++..-      .   .+ +    ..-..+.++.+.+
T Consensus       261 ~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l------~---~~-g----~~GV~~~le~~~~  326 (360)
T COG1304         261 DSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGL------A---AG-G----EAGVERVLEIIRK  326 (360)
T ss_pred             HHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHH------H---hc-c----HHHHHHHHHHHHH
Confidence            788899998863 999999999999999999997 99999999985421      1   11 1    1123456666666


Q ss_pred             HHHHHHh-cCCcccHHHHHHh
Q psy2386         253 YIRQQLN-NNKIKNINSITRH  272 (311)
Q Consensus       253 ~~~~~~~-~g~~~~~~~~~k~  272 (311)
                      .+...+. -|. ..+.++++-
T Consensus       327 El~~~M~L~G~-~~i~el~~~  346 (360)
T COG1304         327 ELKIAMALTGA-KNIEELKRV  346 (360)
T ss_pred             HHHHHHHhcCC-CcHHHhccC
Confidence            6665555 553 456666554

>PRK08005 epimerase; Validated

Probab=97.73  E-value=0.0029  Score=56.00  Aligned_cols=151  Identities=13%  Similarity=0.172  Sum_probs=100.1

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      +.++|.+.|+..+.+-.+.++++|+|.+-+-  =|.=+||             ..+=-++++++++.++.|+.|=+=.  
T Consensus         3 i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN-------------~tfG~~~i~~l~~~t~~~~DvHLMv--   67 (210)
T PRK08005          3 LHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINN-------------ITFGMKTIQAVAQQTRHPLSFHLMV--   67 (210)
T ss_pred             EEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCc-------------cccCHHHHHHHHhcCCCCeEEEecc--
Confidence            5678999999999999999999999865553  2322222             1122355677777777887664433  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-----c---------------------------------------cccC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA-----F---------------------------------------LKKL  161 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-----~---------------------------------------~~G~  161 (311)
                      .+      ...+++.+.++|++.|++|.-..     .                                       ..|+
T Consensus        68 ~~------P~~~i~~~~~~gad~It~H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf  141 (210)
T PRK08005         68 SS------PQRWLPWLAAIRPGWIFIHAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDG  141 (210)
T ss_pred             CC------HHHHHHHHHHhCCCEEEEcccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCC
Confidence            22      34678888999999999984310     0                                       0133


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      .|.  ... +.-++.|+++++..+...+-.=|||+ .+.+.++.+. ||.+.+|++++.++..
T Consensus       142 ~GQ--~f~-~~~~~KI~~l~~~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~GsaiF~~~d~  200 (210)
T PRK08005        142 RGQ--QFI-AAMCEKVSQSREHFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRALFTTANY  200 (210)
T ss_pred             ccc--eec-HHHHHHHHHHHHhcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHhhCCCCH
Confidence            322  111 11245666666655445688889998 6778788776 9999999999876663

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=97.72  E-value=0.00095  Score=59.03  Aligned_cols=133  Identities=17%  Similarity=0.143  Sum_probs=87.1

Q ss_pred             CCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE--eccCCCCCc
Q psy2386          54 DNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH--RIGIDDINS  130 (311)
Q Consensus        54 g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi--R~g~~~~~~  130 (311)
                      |+++-.. +.-++.+.+.|+|.||+=+          ..|...-.|.+.+.+=+++|++++.-++.+|+  -.+.-.++ 
T Consensus        72 G~~~t~~K~~Ea~~ai~~GAdEiDmVi----------nig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~e-  140 (228)
T COG0274          72 GANTTAVKAAEAREAIENGADEIDMVI----------NIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDE-  140 (228)
T ss_pred             CCChHHHHHHHHHHHHHcCCCeeeeee----------eHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHH-
Confidence            5555442 2334556678999999731          13444456899999999999999864455554  44433332 


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                        +....++.+.++|+|+|-=+      .|+++      ..+-.+.+.-+++.+ +.+-|=++|||+|.+|+..+++. +
T Consensus       141 --e~~~A~~i~~~aGAdFVKTS------TGf~~------~gAT~edv~lM~~~vg~~vgvKaSGGIrt~eda~~~i~aga  206 (228)
T COG0274         141 --EKRKACEIAIEAGADFVKTS------TGFSA------GGATVEDVKLMKETVGGRVGVKASGGIRTAEDAKAMIEAGA  206 (228)
T ss_pred             --HHHHHHHHHHHhCCCEEEcC------CCCCC------CCCCHHHHHHHHHHhccCceeeccCCcCCHHHHHHHHHHhH
Confidence              34677888899999999432      23321      124455555555543 25889999999999999999975 4


Q ss_pred             CEE
Q psy2386         209 DGV  211 (311)
Q Consensus       209 dgV  211 (311)
                      .-+
T Consensus       207 ~Ri  209 (228)
T COG0274         207 TRI  209 (228)
T ss_pred             HHh
Confidence            433

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.72  E-value=0.00055  Score=64.91  Aligned_cols=137  Identities=20%  Similarity=0.286  Sum_probs=87.1

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~  125 (311)
                      .+.+-+ |..++.+.++..+ .++|+|.|-|...-               -+.+.+.+.++.+|+..+ +||.+-= +  
T Consensus        98 ~V~aav-g~~~~~~er~~~L-~~agvD~ivID~a~---------------g~s~~~~~~ik~ik~~~~~~~viaGN-V--  157 (352)
T PF00478_consen   98 LVAAAV-GTRDDDFERAEAL-VEAGVDVIVIDSAH---------------GHSEHVIDMIKKIKKKFPDVPVIAGN-V--  157 (352)
T ss_dssp             CEEEEE-ESSTCHHHHHHHH-HHTT-SEEEEE-SS---------------TTSHHHHHHHHHHHHHSTTSEEEEEE-E--
T ss_pred             eEEEEe-cCCHHHHHHHHHH-HHcCCCEEEccccC---------------ccHHHHHHHHHHHHHhCCCceEEecc-c--
Confidence            355555 4555566666654 45799988775211               134666788889988874 7777631 1  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEe---c---CccccccCCCCcCCCCCcCcHHHHHH---HHHhCCCCeEEEecCCC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVH---A---RNAFLKKLNPKQNRKIPILKYNFVYN---LKKDFPELEIIINGGIK  196 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh---~---Rt~~~~G~~g~~~~~~~~~~~~~i~~---i~~~~~~ipvi~nGgI~  196 (311)
                             .+.+-++.|.++|+|.|.|-   |   .|+...|.. .       +-+..|.+   .++.. .+|||+-|||+
T Consensus       158 -------~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG-~-------PQ~tAv~~~a~~a~~~-~v~iIADGGi~  221 (352)
T PF00478_consen  158 -------VTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVG-V-------PQLTAVYECAEAARDY-GVPIIADGGIR  221 (352)
T ss_dssp             --------SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBS-C-------THHHHHHHHHHHHHCT-TSEEEEESS-S
T ss_pred             -------CCHHHHHHHHHcCCCEEEEeccCCcccccccccccC-C-------cHHHHHHHHHHHhhhc-cCceeecCCcC
Confidence                   13577888999999999984   1   122122211 1       23344444   44455 69999999999


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.-|+.+.|.. ||.||+|+-+-+
T Consensus       222 ~sGDi~KAla~GAd~VMlG~llAg  245 (352)
T PF00478_consen  222 TSGDIVKALAAGADAVMLGSLLAG  245 (352)
T ss_dssp             SHHHHHHHHHTT-SEEEESTTTTT
T ss_pred             cccceeeeeeecccceeechhhcc
Confidence            99999999987 999999987743

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=97.70  E-value=0.0004  Score=60.97  Aligned_cols=80  Identities=15%  Similarity=0.082  Sum_probs=58.3

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +....+.|+|+|.+++-..   +.+  ...+.++..++.++++++..+++||++-||| +.+++.++++. +|+|.+|++
T Consensus       117 ~~~a~~~gaD~v~~~~~~~---~~~--~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~  190 (212)
T PRK00043        117 AAAALAAGADYVGVGPIFP---TPT--KKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVAVVSA  190 (212)
T ss_pred             HHHHhHcCCCEEEECCccC---CCC--CCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEeHH
Confidence            4555678999998874322   111  1111222358999999988744999999999 68999999987 999999999


Q ss_pred             hhhCCcc
Q psy2386         217 AYKNPFL  223 (311)
Q Consensus       217 ~l~~P~i  223 (311)
                      ++.++..
T Consensus       191 i~~~~d~  197 (212)
T PRK00043        191 ITGAEDP  197 (212)
T ss_pred             hhcCCCH
Confidence            8765543

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.69  E-value=0.0018  Score=57.01  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=99.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----ccc----CcccCcccCChHHHHHHHHHHhccccc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQN----GFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v~~----~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.+++.=|.+.++++..+.++.+.+.|++.|||.+-.|...     .++    --.|+.=.-+++.+.+.+++     +-
T Consensus         7 ~~~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~a-----GA   81 (204)
T TIGR01182         7 EAKIVPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDA-----GA   81 (204)
T ss_pred             hCCEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHc-----CC
Confidence            46788888999999999999999999999999998766431     111    11222223455555544432     11


Q ss_pred             eeEEEEeccCCCCC-------------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         116 DITVKHRIGIDDIN-------------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       116 pvsvKiR~g~~~~~-------------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      .+.  +..+++.+-             ..-..-| +..+.++|++.|.+.+-.. ..|             -.+++.++.
T Consensus        82 ~Fi--vsP~~~~~v~~~~~~~~i~~iPG~~TptE-i~~A~~~Ga~~vKlFPA~~-~GG-------------~~yikal~~  144 (204)
T TIGR01182        82 QFI--VSPGLTPELAKHAQDHGIPIIPGVATPSE-IMLALELGITALKLFPAEV-SGG-------------VKMLKALAG  144 (204)
T ss_pred             CEE--ECCCCCHHHHHHHHHcCCcEECCCCCHHH-HHHHHHCCCCEEEECCchh-cCC-------------HHHHHHHhc
Confidence            122  122222100             0000112 2334567777777765321 111             378999999


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      -+|++|++..|||.. +.+.++++. +.+|.+|+.++....
T Consensus       145 plp~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~~~~~  184 (204)
T TIGR01182       145 PFPQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLVPKDL  184 (204)
T ss_pred             cCCCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhcCchh
Confidence            889999999999986 899999987 999999998876444

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=97.69  E-value=0.002  Score=58.37  Aligned_cols=152  Identities=15%  Similarity=0.143  Sum_probs=102.3

Q ss_pred             CCCCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc--eeEE
Q psy2386          44 EEHPIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITV  119 (311)
Q Consensus        44 ~~~p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--pvsv  119 (311)
                      ...|+++-+=  -.+++.+.+.++.+.+.|+++|.|.=+..-+ . .++.|..-+-.++...+.+++++++.+-  ++.|
T Consensus        68 ~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k-~-~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~I  145 (243)
T cd00377          68 VDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPK-K-CGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVI  145 (243)
T ss_pred             ccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCc-c-ccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEE
Confidence            3578887643  2377889999999989999999996554321 1 1223444455777777777777776543  5666


Q ss_pred             EEeccC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CC
Q psy2386         120 KHRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GI  195 (311)
Q Consensus       120 KiR~g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI  195 (311)
                      =.|..-  ......++.++.++...++|+|.+-+++.+                 +.+.++++.+.. ++||..+-  +-
T Consensus       146 iARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~~  207 (243)
T cd00377         146 IARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGLK-----------------DPEEIRAFAEAP-DVPLNVNMTPGG  207 (243)
T ss_pred             EEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHhcC-CCCEEEEecCCC
Confidence            666321  111335678899999999999999998663                 568899999987 69987762  22


Q ss_pred             --CCHHHHHHHHhhcCEEEEehhh
Q psy2386         196 --KTKKEIDLHLNYIDGVMLGREA  217 (311)
Q Consensus       196 --~s~~da~~~l~~adgVmigRa~  217 (311)
                        .+.+++.++  ++..|.+|-.+
T Consensus       208 ~~~~~~~l~~l--G~~~v~~~~~~  229 (243)
T cd00377         208 NLLTVAELAEL--GVRRVSYGLAL  229 (243)
T ss_pred             CCCCHHHHHHC--CCeEEEEChHH
Confidence              355554443  37777777544

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=97.68  E-value=0.00016  Score=64.49  Aligned_cols=83  Identities=13%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh---hcC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN---YID  209 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~---~ad  209 (311)
                      +..++++.+.+.|++.+++-.-++. .|         .+.+++.|+++.+.   +|+..-|||+|.+|+++++.   .||
T Consensus        37 dP~~~a~~~~~~g~~~l~ivDLd~~-~~---------~~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~~a~  103 (221)
T TIGR00734        37 SPDDAAKVIEEIGARFIYIADLDRI-VG---------LGDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLEFAS  103 (221)
T ss_pred             CHHHHHHHHHHcCCCEEEEEEcccc-cC---------CcchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhccce
Confidence            3578999999999999998654431 12         13588999999986   48999999999999999954   499


Q ss_pred             EEEEehhhhhCCcchHHhH
Q psy2386         210 GVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~  228 (311)
                      -|.+|+.++.||.++.++.
T Consensus       104 rvvigT~a~~~p~~l~~~~  122 (221)
T TIGR00734       104 RVVVATETLDITELLRECY  122 (221)
T ss_pred             EEeecChhhCCHHHHHHhh
Confidence            9999999999999888875

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=97.68  E-value=0.00043  Score=59.55  Aligned_cols=84  Identities=13%  Similarity=0.033  Sum_probs=61.7

Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      -+..+.+.|+|+|.+.....   +.++.  ....+..++.++++++.. ++||++-|||. .+++.++++. +|+|.+|+
T Consensus       107 ~~~~~~~~g~d~i~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~-~~pv~a~GGi~-~~~i~~~~~~Ga~~i~~g~  179 (196)
T cd00564         107 EALRAEELGADYVGFGPVFP---TPTKP--GAGPPLGLELLREIAELV-EIPVVAIGGIT-PENAAEVLAAGADGVAVIS  179 (196)
T ss_pred             HHHHHhhcCCCEEEECCccC---CCCCC--CCCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCCEEEEeh
Confidence            35667788999999875532   11111  111345789999998875 79999999995 7999999987 99999999


Q ss_pred             hhhhCCcchHHh
Q psy2386         216 EAYKNPFLMSNF  227 (311)
Q Consensus       216 a~l~~P~i~~~~  227 (311)
                      +++.++.....+
T Consensus       180 ~i~~~~~~~~~~  191 (196)
T cd00564         180 AITGADDPAAAA  191 (196)
T ss_pred             HhhcCCCHHHHH
Confidence            998766544333

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>TIGR02317 prpB methylisocitrate lyase

Probab=97.67  E-value=0.0021  Score=59.48  Aligned_cols=153  Identities=14%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV  119 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv  119 (311)
                      .+.||++=+=   |+ |....+.++.+.++|+.+|.|-=... +|.+....|-.+ -.++...+=+++++++. +.++.+
T Consensus        72 ~~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~-pK~cgh~~g~~l-v~~ee~~~kI~Aa~~a~~~~d~~I  148 (285)
T TIGR02317        72 TDLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVL-PKRCGHLPGKEL-VSREEMVDKIAAAVDAKRDEDFVI  148 (285)
T ss_pred             cCCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCC-ccccCCCCCccc-cCHHHHHHHHHHHHHhccCCCEEE
Confidence            3578888773   55 99999999999999999999975542 333222123233 34554455555555543 556777


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC--
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG--  194 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg--  194 (311)
                      =-|+.-......++.++-++...++|+|.|-+++-+                 +.+.++++.+.+ +.|+..|   |+  
T Consensus       149 iARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~~-----------------~~e~i~~~~~~i-~~Pl~~n~~~~~~~  210 (285)
T TIGR02317       149 IARTDARAVEGLDAAIERAKAYVEAGADMIFPEALT-----------------SLEEFRQFAKAV-KVPLLANMTEFGKT  210 (285)
T ss_pred             EEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCC
Confidence            778643333346678888999999999999998743                 457789999998 5888543   33  


Q ss_pred             -CCCHHHHHHHHhhcCEEEEehhhhh
Q psy2386         195 -IKTKKEIDLHLNYIDGVMLGREAYK  219 (311)
Q Consensus       195 -I~s~~da~~~l~~adgVmigRa~l~  219 (311)
                       ..|.+++.++  ++..|..|..++.
T Consensus       211 p~~s~~eL~~l--Gv~~v~~~~~~~~  234 (285)
T TIGR02317       211 PLFTADELREA--GYKMVIYPVTAFR  234 (285)
T ss_pred             CCCCHHHHHHc--CCcEEEEchHHHH
Confidence             2344443332  3899999866544

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=97.66  E-value=0.0013  Score=58.40  Aligned_cols=155  Identities=17%  Similarity=0.228  Sum_probs=101.3

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc--eeEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--DITV  119 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--pvsv  119 (311)
                      .+-..|+++++.-||+..   |..++...|+++|-.|.-|-..- +..|   -+.-+...+.+....+...+.+  -|-|
T Consensus        82 r~v~iPvGvNVLrNd~va---A~~IA~a~gA~FIRVN~~tg~~~-tdqG---iieg~A~e~~r~r~~L~~~v~vlADv~V  154 (263)
T COG0434          82 REVSIPVGVNVLRNDAVA---ALAIAYAVGADFIRVNVLTGAYA-TDQG---IIEGNAAELARYRARLGSRVKVLADVHV  154 (263)
T ss_pred             HhccccceeeeeccccHH---HHHHHHhcCCCEEEEEeeeceEe-cccc---eecchHHHHHHHHHhccCCcEEEeecch
Confidence            355789999999998753   34455677899999997664432 1111   1222333333333444422221  2344


Q ss_pred             EEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                      |.-....+.+    +.+.++- ++..++|+++++|.+.   |         .+.|.+.++.+++.. ++||+.+-|+. +
T Consensus       155 KHa~~l~~~~----~~~~v~dtver~~aDaVI~tG~~T---G---------~~~d~~el~~a~~~~-~~pvlvGSGv~-~  216 (263)
T COG0434         155 KHAVHLGNRS----LEEAVKDTVERGLADAVIVTGSRT---G---------SPPDLEELKLAKEAV-DTPVLVGSGVN-P  216 (263)
T ss_pred             hcccccCCcC----HHHHHHHHHHccCCCEEEEecccC---C---------CCCCHHHHHHHHhcc-CCCEEEecCCC-H
Confidence            5444333332    3445555 7778899999998752   1         246999999999988 69999988885 7


Q ss_pred             HHHHHHHhhcCEEEEehhhhhCC
Q psy2386         199 KEIDLHLNYIDGVMLGREAYKNP  221 (311)
Q Consensus       199 ~da~~~l~~adgVmigRa~l~~P  221 (311)
                      +.+.+++..|||+++|+.+=.+-
T Consensus       217 eN~~~~l~~adG~IvgT~lK~~G  239 (263)
T COG0434         217 ENIEELLKIADGVIVGTSLKKGG  239 (263)
T ss_pred             HHHHHHHHHcCceEEEEEEccCC
Confidence            88999998899999998774443

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=97.65  E-value=0.0026  Score=59.07  Aligned_cols=153  Identities=15%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV  119 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv  119 (311)
                      .+.||++=+=   | +|....+.++.+.++|+.+|.|-=.+. +|.+. ..++.-+-.++...+=+++++++. +.++.|
T Consensus        77 ~~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~I  153 (292)
T PRK11320         77 CDLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVG-AKRCG-HRPNKEIVSQEEMVDRIKAAVDARTDPDFVI  153 (292)
T ss_pred             cCCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCC-ccccC-CCCCCcccCHHHHHHHHHHHHHhccCCCeEE
Confidence            3578888773   5 999999999999999999999964442 33222 222323345555555555555543 566777


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC--
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG--  194 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg--  194 (311)
                      =-|+.--.....++.++-++...++|+|.|-+++-+                 +.+.++++.+.+ +.|+.+|   |+  
T Consensus       154 iARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~~n~~~~~~~  215 (292)
T PRK11320        154 MARTDALAVEGLDAAIERAQAYVEAGADMIFPEAMT-----------------ELEMYRRFADAV-KVPILANITEFGAT  215 (292)
T ss_pred             EEecCcccccCHHHHHHHHHHHHHcCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCC
Confidence            778643333346678888999999999999998743                 568899999988 6888443   33  


Q ss_pred             -CCCHHHHHHHHhhcCEEEEehhhhh
Q psy2386         195 -IKTKKEIDLHLNYIDGVMLGREAYK  219 (311)
Q Consensus       195 -I~s~~da~~~l~~adgVmigRa~l~  219 (311)
                       ..|.++..++  ++..|..|-.++.
T Consensus       216 p~~s~~~L~~l--Gv~~v~~~~~~~~  239 (292)
T PRK11320        216 PLFTTEELASA--GVAMVLYPLSAFR  239 (292)
T ss_pred             CCCCHHHHHHc--CCcEEEEChHHHH
Confidence             2355544333  3888888865543

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.0058  Score=53.78  Aligned_cols=141  Identities=16%  Similarity=0.187  Sum_probs=100.2

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ++++++.-+-..|.-.+.  ++++.++|+|.+-+-+--                +...+...++..++ .++-+-+-+--
T Consensus        55 pd~~IvAD~Kt~D~G~~e--~~ma~~aGAd~~tV~g~A----------------~~~TI~~~i~~A~~-~~~~v~iDl~~  115 (217)
T COG0269          55 PDKIIVADLKTADAGAIE--ARMAFEAGADWVTVLGAA----------------DDATIKKAIKVAKE-YGKEVQIDLIG  115 (217)
T ss_pred             CCCeEEeeeeecchhHHH--HHHHHHcCCCEEEEEecC----------------CHHHHHHHHHHHHH-cCCeEEEEeec
Confidence            578888888877776654  677889999999886333                33455566666555 46666666554


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da  201 (311)
                      .|+       +.+.++.+++.|++.+.+| ||+....|.+         ..|+.+..+++... ...|-..|||. ++++
T Consensus       116 ~~~-------~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~---------~~~~~l~~ik~~~~~g~~vAVaGGI~-~~~i  178 (217)
T COG0269         116 VWD-------PEQRAKWLKELGVDQVILHRGRDAQAAGKS---------WGEDDLEKIKKLSDLGAKVAVAGGIT-PEDI  178 (217)
T ss_pred             CCC-------HHHHHHHHHHhCCCEEEEEecccHhhcCCC---------ccHHHHHHHHHhhccCceEEEecCCC-HHHH
Confidence            343       3567788888999999999 6765334532         23566777777652 27889999996 7999


Q ss_pred             HHHHhh-cCEEEEehhhhhC
Q psy2386         202 DLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~  220 (311)
                      ..+... +|-|.+||++.+-
T Consensus       179 ~~~~~~~~~ivIvGraIt~a  198 (217)
T COG0269         179 PLFKGIGADIVIVGRAITGA  198 (217)
T ss_pred             HHHhcCCCCEEEECchhcCC
Confidence            998876 9999999998543

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.0029  Score=55.90  Aligned_cols=157  Identities=16%  Similarity=0.220  Sum_probs=107.6

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      .++.++|.+.|...+.+-.+.++++|+|.|-+-.  |.=+||             ..+=-.+++++++.++.|+.|=+=+
T Consensus         4 ~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPN-------------iTfGp~~v~~l~~~t~~p~DvHLMV   70 (220)
T COG0036           4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPN-------------ITFGPPVVKALRKITDLPLDVHLMV   70 (220)
T ss_pred             ceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCC-------------cccCHHHHHHHhhcCCCceEEEEec
Confidence            4688999999999999999999999999876653  222222             2222466788888888998886654


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--------------------------cc------------------ccc
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--------------------------NA------------------FLK  159 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--------------------------t~------------------~~~  159 (311)
                        .+      ...++..+.++|++.||+|.=                          |.                  ...
T Consensus        71 --~~------p~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnP  142 (220)
T COG0036          71 --EN------PDRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNP  142 (220)
T ss_pred             --CC------HHHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECC
Confidence              21      357788889999999998832                          10                  011


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCC---CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFP---ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~---~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      |+.|.  ... +.-.+-++++++...   ++-+-.=|||+ .+.+.++.+. ||.+.+|++++.+++.-..+
T Consensus       143 GfgGQ--~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSalF~~~d~~~~i  210 (220)
T COG0036         143 GFGGQ--KFI-PEVLEKIRELRAMIDERLDILIEVDGGIN-LETIKQLAAAGADVFVAGSALFGADDYKATI  210 (220)
T ss_pred             CCccc--ccC-HHHHHHHHHHHHHhcccCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEEEeCCccHHHHH
Confidence            44442  111 123566777776653   34566779997 4777777765 99999999999998843333

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=97.61  E-value=0.00041  Score=62.37  Aligned_cols=137  Identities=12%  Similarity=0.154  Sum_probs=84.1

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEeccCCC----CCcHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDD----INSYDF  133 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~g~~~----~~~~~~  133 (311)
                      ...++.+.+.|+|+||+-+-          +|...-.+.+.+.+-++++++.+   ++||.+-.-+ .+.    ....+.
T Consensus        79 ~~~ve~A~~~GAd~vd~vi~----------~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l-~~~~~~~~~~~~~  147 (236)
T PF01791_consen   79 VAEVEEAIRLGADEVDVVIN----------YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYL-RGEEVADEKKPDL  147 (236)
T ss_dssp             HHHHHHHHHTT-SEEEEEEE----------HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECE-CHHHBSSTTHHHH
T ss_pred             HHHHHHHHHcCCceeeeecc----------ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEec-CchhhcccccHHH
Confidence            45667788899999998521          11111122344444444444433   7888776322 111    112224


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe----EEEecCC------CCHHHHHH
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE----IIINGGI------KTKKEIDL  203 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip----vi~nGgI------~s~~da~~  203 (311)
                      +...++.+.+.|+|.|-..-..  ..|        ....+.+.++++.+.. .+|    |.+.|||      ++.+++.+
T Consensus       148 I~~a~ria~e~GaD~vKt~tg~--~~~--------~t~~~~~~~~~~~~~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~  216 (236)
T PF01791_consen  148 IARAARIAAELGADFVKTSTGK--PVG--------ATPEDVELMRKAVEAA-PVPGKVGVKASGGIDAEDFLRTLEDALE  216 (236)
T ss_dssp             HHHHHHHHHHTT-SEEEEE-SS--SSC--------SHHHHHHHHHHHHHTH-SSTTTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEecCCc--ccc--------ccHHHHHHHHHHHHhc-CCCcceEEEEeCCCChHHHHHHHHHHHH
Confidence            5677888899999999764221  011        1112455666666665 588    9999999      99999999


Q ss_pred             HHhh-c--CEEEEehhhhh
Q psy2386         204 HLNY-I--DGVMLGREAYK  219 (311)
Q Consensus       204 ~l~~-a--dgVmigRa~l~  219 (311)
                      +++. |  -|++.||.++.
T Consensus       217 ~i~aGa~~~G~~~Gr~i~q  235 (236)
T PF01791_consen  217 FIEAGADRIGTSSGRNIWQ  235 (236)
T ss_dssp             HHHTTHSEEEEEEHHHHHT
T ss_pred             HHHcCChhHHHHHHHHHHc
Confidence            9986 8  89999998764

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=97.60  E-value=0.0089  Score=55.29  Aligned_cols=114  Identities=10%  Similarity=0.196  Sum_probs=73.2

Q ss_pred             ChHHHHHHHHHHhccccceeEEEE-eccCCCCC------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKH-RIGIDDIN------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKi-R~g~~~~~------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      +.+...++++-+++ .++||-..+ .+|..++.      ++....+..+..++.|+|+|.+.-.+. ...+  +   ..+
T Consensus       113 ni~~t~~v~~~a~~-~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~-hg~~--~---~~~  185 (281)
T PRK06806        113 NIQKTKEIVELAKQ-YGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNA-HGMY--N---GDP  185 (281)
T ss_pred             HHHHHHHHHHHHHH-cCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCC-CCCC--C---CCC
Confidence            33444454444443 377776553 45522211      111234444445678999998743331 1111  1   235


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         171 ILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      +.+++.++++++.+ ++|+++-|  ||. .+++.++++. +++|-+.+++..+
T Consensus       186 ~l~~~~L~~i~~~~-~iPlV~hG~SGI~-~e~~~~~i~~G~~kinv~T~i~~a  236 (281)
T PRK06806        186 NLRFDRLQEINDVV-HIPLVLHGGSGIS-PEDFKKCIQHGIRKINVATATFNS  236 (281)
T ss_pred             ccCHHHHHHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEEhHHHHHH
Confidence            68999999999998 79999999  886 4778888876 9999999999885

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=97.59  E-value=0.00064  Score=59.07  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             HHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       139 ~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      ..+.+.|+|++.+..-..  .+   ......++..++.++++++..+++||++-||| +++++.++++. +|||.+|+++
T Consensus       110 ~~a~~~g~dyi~~~~v~~--t~---~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i  183 (196)
T TIGR00693       110 AEAEAEGADYIGFGPIFP--TP---TKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGVAVVSAI  183 (196)
T ss_pred             HHHhHcCCCEEEECCccC--CC---CCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEEEhHHh
Confidence            456788999998743321  00   00112233578999999887656999999999 58999999876 9999999999


Q ss_pred             hhCCc
Q psy2386         218 YKNPF  222 (311)
Q Consensus       218 l~~P~  222 (311)
                      +..+.
T Consensus       184 ~~~~d  188 (196)
T TIGR00693       184 MQAAD  188 (196)
T ss_pred             hCCCC
Confidence            86554

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=97.57  E-value=0.0073  Score=53.95  Aligned_cols=150  Identities=18%  Similarity=0.240  Sum_probs=99.7

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEecc
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g  124 (311)
                      +.++|.+.|+..+.+-.+.+++.|+|.+-+-  =|+=+||.   .+|          -++++++++. ++.|+.|=+=+ 
T Consensus         6 i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~---tfg----------~~~i~~lr~~~~~~~~dvHLMv-   71 (223)
T PRK08745          6 IAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNL---TIG----------PMVCQALRKHGITAPIDVHLMV-   71 (223)
T ss_pred             EEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCc---ccC----------HHHHHHHHhhCCCCCEEEEecc-
Confidence            6789999999999999999999998875543  34322221   122          3467788887 58887775443 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-----c---------------------------------------ccc
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-----F---------------------------------------LKK  160 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-----~---------------------------------------~~G  160 (311)
                       ++      ...+++.+.++|++.|++|.-..     .                                       ..|
T Consensus        72 -~~------P~~~i~~~~~~gad~I~~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PG  144 (223)
T PRK08745         72 -EP------VDRIVPDFADAGATTISFHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPG  144 (223)
T ss_pred             -CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCC
Confidence             22      34678888899999999984310     0                                       013


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.|.  .+. +.-++-|+++++..    .++.|-.-|||+ .+.+.++.+. +|.+++|++++..+.
T Consensus       145 f~GQ--~fi-~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF~~~d  207 (223)
T PRK08745        145 FGGQ--AFI-PSALDKLRAIRKKIDALGKPIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAIFNAPD  207 (223)
T ss_pred             CCCc--ccc-HHHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCC
Confidence            3332  111 11345566655532    246688889998 6788888876 999999999876554

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=97.57  E-value=0.0012  Score=60.23  Aligned_cols=119  Identities=16%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      +-|++++++|+-.|-.----|+.. + ...|-+-+++|+.+.    ++++.+++||.-++|.++         ..-++.|
T Consensus        19 ~qa~~ae~aga~~v~~~~~~~~~~-~-~~~~v~R~~~~~~I~----~Ik~~V~iPVIGi~K~~~---------~~Ea~~L   83 (283)
T cd04727          19 EQARIAEEAGAVAVMALERVPADI-R-AAGGVARMADPKMIK----EIMDAVSIPVMAKVRIGH---------FVEAQIL   83 (283)
T ss_pred             HHHHHHHHcCceEEeeeccCchhh-h-hcCCeeecCCHHHHH----HHHHhCCCCeEEeeehhH---------HHHHHHH
Confidence            346888999987777765667765 3 334677888888855    555567999999999864         3447889


Q ss_pred             HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .++|+|.|--+.|.+              | ..+++..+|..+ ++|++  .|+.|.+++.+..+. +|.|--
T Consensus        84 ~eaGvDiIDaT~r~r--------------P-~~~~~~~iK~~~-~~l~M--AD~stleEal~a~~~Gad~I~T  138 (283)
T cd04727          84 EALGVDMIDESEVLT--------------P-ADEEHHIDKHKF-KVPFV--CGARNLGEALRRISEGAAMIRT  138 (283)
T ss_pred             HHcCCCEEeccCCCC--------------c-HHHHHHHHHHHc-CCcEE--ccCCCHHHHHHHHHCCCCEEEe
Confidence            999999995444432              2 467888998887 66665  599999999999876 886543

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=97.52  E-value=0.0053  Score=57.03  Aligned_cols=156  Identities=10%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             CCCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeE
Q psy2386          43 AEEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT  118 (311)
Q Consensus        43 ~~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvs  118 (311)
                      ..+.||++=+   +|+.++ ..+.++.+.++|+.+|.|-=... +|.+. +.++.-+-.++...+=|++++++. +.++.
T Consensus        75 ~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~~-pK~cg-~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~  151 (294)
T TIGR02319        75 AVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQVN-PKRCG-HLEGKRLISTEEMTGKIEAAVEAREDEDFT  151 (294)
T ss_pred             ccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCCC-ccccC-CCCCccccCHHHHHHHHHHHHHhccCCCeE
Confidence            3467888877   366666 78889999999999999975432 23222 223332334444444445555433 45577


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---EecCC
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII---INGGI  195 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---~nGgI  195 (311)
                      |=-|+.-......++.++-++...++|+|.|-+|+-.                 +.+.++++.+.+ +.|+.   ..|+-
T Consensus       152 I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~-----------------~~~ei~~~~~~~-~~P~~~nv~~~~~  213 (294)
T TIGR02319       152 IIARTDARESFGLDEAIRRSREYVAAGADCIFLEAML-----------------DVEEMKRVRDEI-DAPLLANMVEGGK  213 (294)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCCC-----------------CHHHHHHHHHhc-CCCeeEEEEecCC
Confidence            7667643333346678888999999999999998632                 557899999987 56763   33332


Q ss_pred             CCHHHHHHHHh-hcCEEEEehhhhh
Q psy2386         196 KTKKEIDLHLN-YIDGVMLGREAYK  219 (311)
Q Consensus       196 ~s~~da~~~l~-~adgVmigRa~l~  219 (311)
                      .-.-++.++-+ +++.|..+-.++.
T Consensus       214 ~p~~s~~eL~~lG~~~v~~~~~~~~  238 (294)
T TIGR02319       214 TPWLTTKELESIGYNLAIYPLSGWM  238 (294)
T ss_pred             CCCCCHHHHHHcCCcEEEEcHHHHH
Confidence            21123334433 3888988855543

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4

Probab=97.47  E-value=0.0032  Score=60.39  Aligned_cols=124  Identities=12%  Similarity=0.033  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +|+++.+.|+.+.+.||+.|-|-.|=+              ..++.-.+.++++|+.+  ++++.|-..-+|+.    ++
T Consensus       143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~----~~  204 (368)
T cd03329         143 SPEAYADFAEECKALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSR----AD  204 (368)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCH----HH
Confidence            889999999888889999999842100              11455678889999887  46777766666654    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC-HHHHHHHHhh--cCE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNY--IDG  210 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s-~~da~~~l~~--adg  210 (311)
                      ..++++.+++.++.++-               + ..++.|++..+++++.. ++||.+...+.+ ++++.++++.  +|.
T Consensus       205 A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~~E~~~~~~~~~~~~i~~~a~d~  267 (368)
T cd03329         205 ALRLGRALEELGFFWYE---------------D-PLREASISSYRWLAEKL-DIPILGTEHSRGALESRADWVLAGATDF  267 (368)
T ss_pred             HHHHHHHhhhcCCCeEe---------------C-CCCchhHHHHHHHHhcC-CCCEEccCcccCcHHHHHHHHHhCCCCE
Confidence            68999999998887772               1 11234788888999987 799988888999 9999999976  998


Q ss_pred             EEEe
Q psy2386         211 VMLG  214 (311)
Q Consensus       211 Vmig  214 (311)
                      |++-
T Consensus       268 v~~d  271 (368)
T cd03329         268 LRAD  271 (368)
T ss_pred             EecC
Confidence            8874

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.46  E-value=0.011  Score=52.87  Aligned_cols=155  Identities=10%  Similarity=0.035  Sum_probs=92.2

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.+++.=+.+.++++..+.++.+.+.|+..|||-+--|...              +.+.++.+..++.  .| .+.+-.|
T Consensus        14 ~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~--------------~~i~~l~~~~~~~--~p-~~~vGaG   76 (222)
T PRK07114         14 ATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAH--------------EVFAELVKYAAKE--LP-GMILGVG   76 (222)
T ss_pred             hCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHH--------------HHHHHHHHHHHhh--CC-CeEEeeE
Confidence            46788888999999999999999999999999987555321              2222222222221  12 1111222


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEec---------C-----------c------cccccCCCCcCCCCCcCcHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHA---------R-----------N------AFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~---------R-----------t------~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                      ---      ..+-++.+.++|++++.--+         +           |      ++..|..--+-+.-......+++
T Consensus        77 TVl------~~e~a~~a~~aGA~FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ik  150 (222)
T PRK07114         77 SIV------DAATAALYIQLGANFIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVK  150 (222)
T ss_pred             eCc------CHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHH
Confidence            111      02334445555555553100         0           0      00111110000000012357899


Q ss_pred             HHHHhCCCCeEEEecCCCC-HHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         179 NLKKDFPELEIIINGGIKT-KKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s-~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .++.-+|+++++..|||.- .+++.++++. +.+|.+|+.++.+.+
T Consensus       151 al~~p~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~~~  196 (222)
T PRK07114        151 AIKGPMPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPKEA  196 (222)
T ss_pred             HHhccCCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCccc
Confidence            9998889999999999995 6899999986 999999988876554

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=97.43  E-value=0.0079  Score=53.35  Aligned_cols=133  Identities=13%  Similarity=0.213  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHc-CCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKW-GYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~-g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~  131 (311)
                      ..+.++-...|+++.+. +-++|-|- .|++.          .|+-|+-...+-.+.+.+. +.-|..     +..++  
T Consensus        79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~etl~Aae~Lv~e-GF~VlP-----Y~~dD--  140 (262)
T COG2022          79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPIETLKAAEQLVKE-GFVVLP-----YTTDD--  140 (262)
T ss_pred             cCCHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChHHHHHHHHHHHhC-CCEEee-----ccCCC--
Confidence            45788999999999875 45777665 23332          3666665444444444332 333332     22222  


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adg  210 (311)
                         .-++++|++.|+..|---+-.- =.        ..+..+-..++-+.+.. ++|||.--||-+++|+...++. ||+
T Consensus       141 ---~v~arrLee~GcaavMPl~aPI-GS--------g~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG~Da  207 (262)
T COG2022         141 ---PVLARRLEEAGCAAVMPLGAPI-GS--------GLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELGADA  207 (262)
T ss_pred             ---HHHHHHHHhcCceEeccccccc-cC--------CcCcCCHHHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcccce
Confidence               2479999999999986433210 00        12335667788888888 8999999999999999999997 999


Q ss_pred             EEEehhh
Q psy2386         211 VMLGREA  217 (311)
Q Consensus       211 VmigRa~  217 (311)
                      |++.++.
T Consensus       208 VL~NTAi  214 (262)
T COG2022         208 VLLNTAI  214 (262)
T ss_pred             eehhhHh
Confidence            9999887

>TIGR02814 pfaD_fam PfaD family protein

Probab=97.39  E-value=0.0049  Score=60.23  Aligned_cols=79  Identities=10%  Similarity=0.071  Sum_probs=52.1

Q ss_pred             HHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-------CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         138 VGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-------PELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       138 ~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-------~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      +..+++.| +|.|++. -.  .+|..|..   ....-+..|.++++.+       ..+||++.|||.|++++..++.. |
T Consensus       174 A~~a~~~g~aD~Ivve-~E--AGGHtg~~---~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGA  247 (444)
T TIGR02814       174 AELARRVPVADDICVE-AD--SGGHTDNR---PLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGA  247 (444)
T ss_pred             HHHHHhCCCCcEEEEe-cc--CCCCCCCC---cHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence            45556666 5899885 22  44544321   0011223343333433       14899999999999999999987 9


Q ss_pred             CEEEEehhhhhCCc
Q psy2386         209 DGVMLGREAYKNPF  222 (311)
Q Consensus       209 dgVmigRa~l~~P~  222 (311)
                      |+|++|+.++.-+.
T Consensus       248 dgV~~GT~flat~E  261 (444)
T TIGR02814       248 DFIVTGSVNQCTVE  261 (444)
T ss_pred             cEEEeccHHHhCcc
Confidence            99999999987554

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.38  E-value=0.0056  Score=54.28  Aligned_cols=148  Identities=18%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc-----c----cCcccCcccCChHHHHHH----------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----Q----NGFFGAILMTKPLLVSDC----------  105 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v-----~----~~~~G~~Ll~~~~~~~~i----------  105 (311)
                      +.+++.=|.+.++++..+.++.+.+.|++.|||-+--|....     +    +--.|+.-.-+++.+...          
T Consensus        14 ~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~Fivs   93 (212)
T PRK05718         14 AGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVS   93 (212)
T ss_pred             HCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEEC
Confidence            467888899999999999999999999999999876553210     0    011222222233333322          


Q ss_pred             -------HHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386         106 -------IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus       106 -------v~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                             ++..++ .++|+.    +|..      ...| +..+.+.|++.+.+.+-.. . |            ...+++
T Consensus        94 P~~~~~vi~~a~~-~~i~~i----PG~~------TptE-i~~a~~~Ga~~vKlFPa~~-~-g------------g~~~lk  147 (212)
T PRK05718         94 PGLTPPLLKAAQE-GPIPLI----PGVS------TPSE-LMLGMELGLRTFKFFPAEA-S-G------------GVKMLK  147 (212)
T ss_pred             CCCCHHHHHHHHH-cCCCEe----CCCC------CHHH-HHHHHHCCCCEEEEccchh-c-c------------CHHHHH
Confidence                   222222 122211    1111      1234 5667788888888865321 1 1            247899


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .++.-+|++|++..|||.. +++.++++. +..+..|..++.
T Consensus       148 ~l~~p~p~~~~~ptGGV~~-~ni~~~l~ag~v~~vggs~L~~  188 (212)
T PRK05718        148 ALAGPFPDVRFCPTGGISP-ANYRDYLALPNVLCIGGSWMVP  188 (212)
T ss_pred             HHhccCCCCeEEEeCCCCH-HHHHHHHhCCCEEEEEChHhCC
Confidence            9998888999999999986 889999875 444444444443

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=97.38  E-value=0.013  Score=54.34  Aligned_cols=156  Identities=13%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             CCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEE
Q psy2386          44 EEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvK  120 (311)
                      ...||++-+= |-+|..+.+.++.+.++|+.+|.|-=.+ |..+---++.|...+-.++...+.+++++++ .+.++.|=
T Consensus        77 ~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~Ii  156 (285)
T TIGR02320        77 TTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMII  156 (285)
T ss_pred             cCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEE
Confidence            3568776552 4689999999999999999999994332 1111001112223344566666666777665 34445554


Q ss_pred             EeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEec--
Q psy2386         121 HRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIING--  193 (311)
Q Consensus       121 iR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nG--  193 (311)
                      -|+.-- .....++.++-++...++|+|.|-+++..                .+.+.+.++.+.+    |++|++.+.  
T Consensus       157 ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~----------------~~~~ei~~~~~~~~~~~p~~pl~~~~~~  220 (285)
T TIGR02320       157 ARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRK----------------KDPDEILEFARRFRNHYPRTPLVIVPTS  220 (285)
T ss_pred             EecccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------------CCHHHHHHHHHHhhhhCCCCCEEEecCC
Confidence            453211 11235678899999999999999998421                1345555555554    357888765  


Q ss_pred             -CCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         194 -GIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       194 -gI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                       +..|.   .++-+. +..|..|-.++
T Consensus       221 ~~~~~~---~eL~~lG~~~v~~~~~~~  244 (285)
T TIGR02320       221 YYTTPT---DEFRDAGISVVIYANHLL  244 (285)
T ss_pred             CCCCCH---HHHHHcCCCEEEEhHHHH
Confidence             33344   344433 88888885543

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid

Probab=97.35  E-value=0.004  Score=59.41  Aligned_cols=148  Identities=10%  Similarity=-0.010  Sum_probs=104.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR  122 (311)
                      .-|+-..++..+++.+.+.|+...+.||..+-+-.|-               .+++.-.+.++++|+.++  +.+.+...
T Consensus       130 ~v~~y~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN  194 (355)
T cd03321         130 PVQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN  194 (355)
T ss_pred             CeeEEEeCCCChHHHHHHHHHHHHHhhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence            4455556666678887777776667799888775431               234555677888888873  55666555


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.++.+|-=                ..++-||+..+++++.. ++||.+...+.++.++.
T Consensus       195 ~~~~~----~~A~~~~~~l~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~  253 (355)
T cd03321         195 QSLTV----PEAIERGQALDQEGLTWIEE----------------PTLQHDYEGHARIASAL-RTPVQMGENWLGPEEMF  253 (355)
T ss_pred             CCcCH----HHHHHHHHHHHcCCCCEEEC----------------CCCCcCHHHHHHHHHhc-CCCEEEcCCCcCHHHHH
Confidence            55553    35789999999999888831                11234889999999998 79999888999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++++.  +|.|++-=.-.+...=+.++.
T Consensus       254 ~~i~~~~~d~i~~~~~~~GGit~~~~ia  281 (355)
T cd03321         254 KALSAGACDLVMPDLMKIGGVTGWLRAS  281 (355)
T ss_pred             HHHHhCCCCeEecCHhhhCCHHHHHHHH
Confidence            99975  998887654444443333443

MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.35  E-value=0.034  Score=51.47  Aligned_cols=76  Identities=14%  Similarity=0.264  Sum_probs=54.6

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adgV  211 (311)
                      .+..+..++.|+|+|.+.-.+. ..-|.     ..+..+++.++++++.+ ++|+++-|  ||. .+++.++++. +++|
T Consensus       156 eea~~f~~~tgvD~Lavs~Gt~-hg~~~-----~~~~l~~e~L~~i~~~~-~iPlv~hGgSGi~-~e~i~~~i~~Gi~ki  227 (282)
T TIGR01859       156 DEAEQFVKETGVDYLAAAIGTS-HGKYK-----GEPGLDFERLKEIKELT-NIPLVLHGASGIP-EEQIKKAIKLGIAKI  227 (282)
T ss_pred             HHHHHHHHHHCcCEEeeccCcc-ccccC-----CCCccCHHHHHHHHHHh-CCCEEEECCCCCC-HHHHHHHHHcCCCEE
Confidence            3434444558999999742221 01111     12457999999999998 79999999  887 4778888876 9999


Q ss_pred             EEehhhh
Q psy2386         212 MLGREAY  218 (311)
Q Consensus       212 migRa~l  218 (311)
                      -+++.+.
T Consensus       228 Nv~T~l~  234 (282)
T TIGR01859       228 NIDTDCR  234 (282)
T ss_pred             EECcHHH
Confidence            9999885

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.33  E-value=0.026  Score=49.57  Aligned_cols=147  Identities=14%  Similarity=0.063  Sum_probs=86.3

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      ..+++.=|.+.++++..+.++.+.+.|+..|||.+--|..                  .+.++.+++..  | .+.+-.|
T Consensus         3 ~~~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit~~tp~a------------------~~~I~~l~~~~--~-~~~vGAG   61 (201)
T PRK06015          3 LQPVIPVLLIDDVEHAVPLARALAAGGLPAIEITLRTPAA------------------LDAIRAVAAEV--E-EAIVGAG   61 (201)
T ss_pred             CCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCccH------------------HHHHHHHHHHC--C-CCEEeeE
Confidence            4678888999999999999999999999999999755532                  23344444333  1 1212222


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEec---------C-----------c------cccccCCCCcCCCCCcC-cHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHA---------R-----------N------AFLKKLNPKQNRKIPIL-KYNFV  177 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~---------R-----------t------~~~~G~~g~~~~~~~~~-~~~~i  177 (311)
                      ---+      .+-++.+.++|++++.--+         +           |      ++..|..=-+-+.-... -..++
T Consensus        62 TVl~------~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yi  135 (201)
T PRK06015         62 TILN------AKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFL  135 (201)
T ss_pred             eCcC------HHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHH
Confidence            1110      2334445555555553100         0           0      00111100000000001 24789


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.++.-+|++|++..|||.. +++.++++. +..+..|..+..
T Consensus       136 kal~~plp~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l~~  177 (201)
T PRK06015        136 KALSSPLAGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWVAP  177 (201)
T ss_pred             HHHHhhCCCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhhCC
Confidence            99999899999999999976 799999976 555555655543

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=97.28  E-value=0.0011  Score=56.27  Aligned_cols=115  Identities=17%  Similarity=0.208  Sum_probs=63.6

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      -|++++++|+-.|------|... ++ ..|-+-|.||..+.+|.++    +++||..|+|+|        .+.| ++.|+
T Consensus        26 QAkIAE~AGA~AVMaLervPadi-R~-~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIG--------HfvE-AqiLe   90 (208)
T PF01680_consen   26 QAKIAEEAGAVAVMALERVPADI-RA-AGGVARMSDPKMIKEIMDA----VSIPVMAKVRIG--------HFVE-AQILE   90 (208)
T ss_dssp             HHHHHHHHT-SEEEE-SS-HHHH-HH-TTS---S--HHHHHHHHHH-----SSEEEEEEETT---------HHH-HHHHH
T ss_pred             HHHHHHHhCCeEEEEeccCCHhH-Hh-cCCccccCCHHHHHHHHHh----eEeceeeccccc--------eeeh-hhhHH
Confidence            46888999987776655556553 33 3577889999998877666    789999999998        2333 78999


Q ss_pred             HcCCCEEEEecCccccccCCCCcCCCCCcCcHH-HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         143 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN-FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       143 ~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~-~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +.|+|+|-=+--      ++        |+|.. .|.  |..+ ++|++..  -++.-++.+-+.. |.++
T Consensus        91 algVD~IDESEV------LT--------pAD~~~HI~--K~~F-~vPFVcG--arnLGEALRRI~EGAaMI  142 (208)
T PF01680_consen   91 ALGVDYIDESEV------LT--------PADEENHID--KHNF-KVPFVCG--ARNLGEALRRIAEGAAMI  142 (208)
T ss_dssp             HTT-SEEEEETT------S----------S-SS------GGG--SS-EEEE--ESSHHHHHHHHHTT-SEE
T ss_pred             HhCCceeccccc------cc--------ccccccccc--chhC-CCCeEec--CCCHHHHHhhHHhhhhhh
Confidence            999999954321      11        23332 121  3455 6887643  3455555555543 5544

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=97.28  E-value=0.0048  Score=55.69  Aligned_cols=146  Identities=16%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV  119 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv  119 (311)
                      +.|+++=+   +|++|..+.+.++.+.++|+.+|.|.=. |.       ..|..++ .++...+=+++++++. +..+.|
T Consensus        69 ~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~-------~~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I  140 (238)
T PF13714_consen   69 SIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCG-------HGGKQLV-SPEEMVAKIRAAVDARRDPDFVI  140 (238)
T ss_dssp             SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTT-------TSTT-B---HHHHHHHHHHHHHHHSSTTSEE
T ss_pred             cCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccC-------CCCCcee-CHHHHHHHHHHHHHhccCCeEEE
Confidence            57888877   3777999999999999999999999865 33       1344455 5555555555555443 333555


Q ss_pred             EEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         120 KHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       120 KiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      =-|+.--  .....++.++-++...++|+|.|-+++..                 +-+.++++.+.+ +.|+..+-+ ..
T Consensus       141 ~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~-----------------~~~~i~~~~~~~-~~Pl~v~~~-~~  201 (238)
T PF13714_consen  141 IARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQ-----------------SEEEIERIVKAV-DGPLNVNPG-PG  201 (238)
T ss_dssp             EEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSS-----------------SHHHHHHHHHHH-SSEEEEETT-SS
T ss_pred             EEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----------------CHHHHHHHHHhc-CCCEEEEcC-CC
Confidence            5565321  12335677888999999999999998764                 346689999988 799877653 22


Q ss_pred             HHHHHHHHhh-cCEEEEehhh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~  217 (311)
                      .-++.++.+. +..|..|-.+
T Consensus       202 ~~~~~eL~~lGv~~v~~~~~~  222 (238)
T PF13714_consen  202 TLSAEELAELGVKRVSYGNSL  222 (238)
T ss_dssp             SS-HHHHHHTTESEEEETSHH
T ss_pred             CCCHHHHHHCCCcEEEEcHHH
Confidence            2444444443 8888887554

...

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=97.23  E-value=0.011  Score=61.00  Aligned_cols=111  Identities=16%  Similarity=0.215  Sum_probs=83.6

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++.+.++++...+ ++.-+.|-++.           .+=++++.++|++.|-|..|.-  ..+         ..|.+..
T Consensus       145 ~~~~l~~l~~~a~~-lGme~LvEvh~-----------~~el~~a~~~ga~iiGINnRdL--~tf---------~vd~~~t  201 (695)
T PRK13802        145 DDAQLKHLLDLAHE-LGMTVLVETHT-----------REEIERAIAAGAKVIGINARNL--KDL---------KVDVNKY  201 (695)
T ss_pred             CHHHHHHHHHHHHH-cCCeEEEEeCC-----------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eeCHHHH
Confidence            35567777776555 57777776653           1224556778999999998873  222         2577888


Q ss_pred             HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .++...+| ++.+|+-+||.|++|+..+.+. +|+|.||.++|..|..-..+++.+
T Consensus       202 ~~L~~~ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~  257 (695)
T PRK13802        202 NELAADLPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLV  257 (695)
T ss_pred             HHHHhhCCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHH
Confidence            88888776 4778999999999999999987 999999999999999766665543

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=97.23  E-value=0.0089  Score=54.12  Aligned_cols=109  Identities=12%  Similarity=0.214  Sum_probs=76.8

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +.+.+.++++...+ .+.-+-|-+.-          ..| ++++.+.|+..|-|..|.  +..+.         .|.+..
T Consensus       141 ~~~~l~el~~~A~~-LGm~~LVEVh~----------~eE-l~rAl~~ga~iIGINnRd--L~tf~---------vdl~~t  197 (254)
T COG0134         141 DDEQLEELVDRAHE-LGMEVLVEVHN----------EEE-LERALKLGAKIIGINNRD--LTTLE---------VDLETT  197 (254)
T ss_pred             CHHHHHHHHHHHHH-cCCeeEEEECC----------HHH-HHHHHhCCCCEEEEeCCC--cchhe---------ecHHHH
Confidence            33445555555443 35555554431          123 334445888888888886  33332         578888


Q ss_pred             HHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         178 YNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       178 ~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .++....|+ ..+|.-+||.|++|+.++... +||+.||.++|.++.....+.+
T Consensus       198 ~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~  251 (254)
T COG0134         198 EKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRE  251 (254)
T ss_pred             HHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHH
Confidence            888887764 778999999999999999988 9999999999999998555443

>PRK06801 hypothetical protein; Provisional

Probab=97.16  E-value=0.023  Score=52.61  Aligned_cols=114  Identities=14%  Similarity=0.205  Sum_probs=70.9

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-ccCCCC---------CcHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCC
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGIDDI---------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPK  164 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~~~~---------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~  164 (311)
                      .++.+...++++..+. .+++|-.-+. +|-.++         ..+....+..+.+++.|+|+|.+.=.+.  .| |.  
T Consensus       111 eeNi~~t~~v~~~a~~-~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~--Hg~y~--  185 (286)
T PRK06801        111 EENVRQTREVVKMCHA-VGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNA--HGKYK--  185 (286)
T ss_pred             HHHHHHHHHHHHHHHH-cCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCC--CCCCC--
Confidence            3455566666665544 3665544432 221111         0011223334444579999999843332  22 11  


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecC--CCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGG--IKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg--I~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                         ..++.+++.++++++.+ ++|++.-||  |. .+++.++++. ++.|=+++++..
T Consensus       186 ---~~~~l~~e~l~~i~~~~-~~PLVlHGGSgi~-~e~~~~~i~~Gi~KINv~T~~~~  238 (286)
T PRK06801        186 ---GEPKLDFARLAAIHQQT-GLPLVLHGGSGIS-DADFRRAIELGIHKINFYTGMSQ  238 (286)
T ss_pred             ---CCCCCCHHHHHHHHHhc-CCCEEEECCCCCC-HHHHHHHHHcCCcEEEehhHHHH
Confidence               12357999999999988 799999998  76 5778888876 999999998843

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=97.16  E-value=0.0058  Score=55.91  Aligned_cols=106  Identities=15%  Similarity=0.278  Sum_probs=73.8

Q ss_pred             CeEEEec-C---CCHHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE---
Q psy2386          47 PIAFQVG-D---NEPKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT---  118 (311)
Q Consensus        47 p~~~Ql~-g---~~~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs---  118 (311)
                      ++++-+- |   .++++ +..+.+.++++|+++|.|--|                   +...+.+++++++ ++||.   
T Consensus        78 ~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-------------------~~~~~~I~al~~a-gIpV~gHi  137 (264)
T PRK00311         78 LVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-------------------EEVAETIKRLVER-GIPVMGHL  137 (264)
T ss_pred             cEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHC-CCCEeeee
Confidence            4776662 3   45666 566677778799999999632                   3455667777654 88885   


Q ss_pred             ------------EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC
Q psy2386         119 ------------VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE  186 (311)
Q Consensus       119 ------------vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~  186 (311)
                                  .|+ .|-++ +..+++++-++.++++|++.|.+-+-.                  -+.++++.+.+ +
T Consensus       138 GL~pq~~~~~gg~~i-~grt~-~~a~~~i~ra~a~~eAGA~~i~lE~v~------------------~~~~~~i~~~l-~  196 (264)
T PRK00311        138 GLTPQSVNVLGGYKV-QGRDE-EAAEKLLEDAKALEEAGAFALVLECVP------------------AELAKEITEAL-S  196 (264)
T ss_pred             cccceeecccCCeee-ecCCH-HHHHHHHHHHHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-C
Confidence                        222 22222 224567888999999999999885442                  26789999998 7


Q ss_pred             CeEEEec
Q psy2386         187 LEIIING  193 (311)
Q Consensus       187 ipvi~nG  193 (311)
                      +|+|+-|
T Consensus       197 iP~igiG  203 (264)
T PRK00311        197 IPTIGIG  203 (264)
T ss_pred             CCEEEec
Confidence            9999876

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=97.15  E-value=0.0022  Score=70.19  Aligned_cols=113  Identities=10%  Similarity=0.091  Sum_probs=76.6

Q ss_pred             ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC-CCCCcCcHH
Q psy2386          98 KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN-RKIPILKYN  175 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~-~~~~~~~~~  175 (311)
                      .++-+.++|..+|+.. +.||+||+-.+..-       -.++.-+.++|+|.|+|.|...- .|-+|..- .+.+ .-|+
T Consensus       979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~~v-------g~ia~gvaka~aD~I~IdG~~GG-TGAap~~~~~~~G-lP~e 1049 (1485)
T PRK11750        979 SIEDLAQLIFDLKQVNPKALVSVKLVSEPGV-------GTIATGVAKAYADLITISGYDGG-TGASPLTSVKYAG-SPWE 1049 (1485)
T ss_pred             CHHHHHHHHHHHHHhCCCCcEEEEEccCCCc-------cHHHhChhhcCCCEEEEeCCCCC-cccccHHHHhhCC-ccHH
Confidence            5677888899999876 67999999865222       13444567899999999987531 11111100 0111 2354


Q ss_pred             H-HHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         176 F-VYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       176 ~-i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      . +.++.+.+      .++.+++.|++.|+.|+...+.. ||.|.+||++|-
T Consensus      1050 ~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~li 1101 (1485)
T PRK11750       1050 LGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMV 1101 (1485)
T ss_pred             HHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcCCcccccchHHHH
Confidence            3 33333221      25999999999999999999876 999999999854

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=97.14  E-value=0.0031  Score=57.21  Aligned_cols=159  Identities=14%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             ccccCCCCCCeEEEecCCCHH-HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC---hHHHHHHHHHHhccc
Q psy2386          38 CLDFNAEEHPIAFQVGDNEPK-KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK---PLLVSDCIKAMRDSV  113 (311)
Q Consensus        38 ~l~~~~~~~p~~~Ql~g~~~~-~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~---~~~~~~iv~~v~~~~  113 (311)
                      +|..-. +.||+.=+++.||- ++..-.+.+.+.||.+|. |+  |..-...+.+...|...   .++=.++++..++. 
T Consensus        75 iLp~v~-~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV~-Nf--PTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~-  149 (268)
T PF09370_consen   75 ILPVVK-DTPVIAGVCATDPFRDMDRFLDELKELGFSGVQ-NF--PTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEK-  149 (268)
T ss_dssp             HGGG-S-SS-EEEEE-TT-TT--HHHHHHHHHHHT-SEEE-E---S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHT-
T ss_pred             hhhhcc-CCCEEEEecCcCCCCcHHHHHHHHHHhCCceEE-EC--CcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHC-
Confidence            444333 58999999999994 466666788899999985 54  64333333333333322   12223444444442 


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH----HHHHHHH---hC-C
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN----FVYNLKK---DF-P  185 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~----~i~~i~~---~~-~  185 (311)
                      +. +|+-.-.  +        .+=++.+.++|+|.|++|-... ..|..|.++.    ..++    .+.++.+   .+ |
T Consensus       150 gl-~T~~yvf--~--------~e~A~~M~~AGaDiiv~H~GlT-~gG~~Ga~~~----~sl~~a~~~~~~i~~aa~~v~~  213 (268)
T PF09370_consen  150 GL-FTTAYVF--N--------EEQARAMAEAGADIIVAHMGLT-TGGSIGAKTA----LSLEEAAERIQEIFDAARAVNP  213 (268)
T ss_dssp             T--EE--EE---S--------HHHHHHHHHHT-SEEEEE-SS-----------S------HHHHHHHHHHHHHHHHCC-T
T ss_pred             CC-eeeeeec--C--------HHHHHHHHHcCCCEEEecCCcc-CCCCcCcccc----CCHHHHHHHHHHHHHHHHHhCC
Confidence            33 2221111  1        3456777899999999994321 3444443221    1222    2333333   22 4


Q ss_pred             C-CeEEEecCCCCHHHHHHHHhh---cCEEEEehhh
Q psy2386         186 E-LEIIINGGIKTKKEIDLHLNY---IDGVMLGREA  217 (311)
Q Consensus       186 ~-ipvi~nGgI~s~~da~~~l~~---adgVmigRa~  217 (311)
                      + |-+.-.|-|.+|+|++.+++.   |+|..-|+.+
T Consensus       214 dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss~  249 (268)
T PF09370_consen  214 DIIVLCHGGPIATPEDAQYVLRNTKGIHGFIGASSM  249 (268)
T ss_dssp             T-EEEEECTTB-SHHHHHHHHHH-TTEEEEEESTTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHhcCCCCCEEecccch
Confidence            5 445566789999999999986   6776665443

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=97.12  E-value=0.037  Score=51.81  Aligned_cols=134  Identities=10%  Similarity=0.168  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          55 NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      .+.++-.+.|+++.++ |-++|-|-.       ..+  --.++.|+..+.+-.+.+.+. +.-|.+=+.     ++    
T Consensus       147 ~ta~eAv~~a~lare~~~~~~iKlEv-------i~e--~~~llpd~~~~v~aa~~L~~~-Gf~v~~yc~-----~d----  207 (326)
T PRK11840        147 YTAEEAVRTLRLAREAGGWDLVKLEV-------LGD--AKTLYPDMVETLKATEILVKE-GFQVMVYCS-----DD----  207 (326)
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEE-------cCC--CCCcccCHHHHHHHHHHHHHC-CCEEEEEeC-----CC----
Confidence            4678888888888876 446666642       111  123455555444444433221 333322222     11    


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                       ...++++++.|+.++  -+-..-. | ||.     +..+-+.++.+.+.. ++||+.-+||.+++|+.+.++. ||||.
T Consensus       208 -~~~a~~l~~~g~~av--mPl~~pI-G-sg~-----gv~~p~~i~~~~e~~-~vpVivdAGIg~~sda~~AmelGadgVL  276 (326)
T PRK11840        208 -PIAAKRLEDAGAVAV--MPLGAPI-G-SGL-----GIQNPYTIRLIVEGA-TVPVLVDAGVGTASDAAVAMELGCDGVL  276 (326)
T ss_pred             -HHHHHHHHhcCCEEE--eeccccc-c-CCC-----CCCCHHHHHHHHHcC-CCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence             467899999999433  3311101 1 111     123778899998885 7999999999999999999997 99999


Q ss_pred             Eehhhh
Q psy2386         213 LGREAY  218 (311)
Q Consensus       213 igRa~l  218 (311)
                      +.+|..
T Consensus       277 ~nSaIa  282 (326)
T PRK11840        277 MNTAIA  282 (326)
T ss_pred             Ecceec
Confidence            999985

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.12  E-value=0.0041  Score=59.09  Aligned_cols=77  Identities=16%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +..+.+.|+|+|.+.+-....   + ++  ...+..++.++.+++.. ++||++-|||. ++++.+++.. +|||.++++
T Consensus       253 ~~~A~~~GaDYI~lGPvf~T~---t-Kp--~~~~~Gle~l~~~~~~~-~iPv~AiGGI~-~~ni~~l~~~Ga~gVAvisa  324 (347)
T PRK02615        253 MAKAIAEGADYIGVGPVFPTP---T-KP--GKAPAGLEYLKYAAKEA-PIPWFAIGGID-KSNIPEVLQAGAKRVAVVRA  324 (347)
T ss_pred             HHHHHHcCCCEEEECCCcCCC---C-CC--CCCCCCHHHHHHHHHhC-CCCEEEECCCC-HHHHHHHHHcCCcEEEEeHH
Confidence            455667899999886543210   0 11  11246799999999887 69999999996 8999998876 999999999


Q ss_pred             hhhCCc
Q psy2386         217 AYKNPF  222 (311)
Q Consensus       217 ~l~~P~  222 (311)
                      ++..+.
T Consensus       325 I~~a~d  330 (347)
T PRK02615        325 IMGAED  330 (347)
T ss_pred             HhCCCC
Confidence            986544

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.11  E-value=0.0042  Score=54.33  Aligned_cols=155  Identities=17%  Similarity=0.217  Sum_probs=89.1

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc-----c----cCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-----Q----NGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v-----~----~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      .+++.=|.+.++++..+.++.+.+.|+..|||.+--|....     +    .--.|+.=..+++.+.+.+++     +..
T Consensus         8 ~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~a-----GA~   82 (196)
T PF01081_consen    8 NKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAA-----GAQ   82 (196)
T ss_dssp             HSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHH-----T-S
T ss_pred             CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHc-----CCC
Confidence            46888889999999999999999999999999977662210     0    001122222334433333322     111


Q ss_pred             eEEEEeccCCCCC-------------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         117 ITVKHRIGIDDIN-------------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       117 vsvKiR~g~~~~~-------------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      +.|  .++++.+-             ..-..-| +..+.++|++.+.+.+-.. .+|             ..+++.++.-
T Consensus        83 Fiv--SP~~~~~v~~~~~~~~i~~iPG~~TptE-i~~A~~~G~~~vK~FPA~~-~GG-------------~~~ik~l~~p  145 (196)
T PF01081_consen   83 FIV--SPGFDPEVIEYAREYGIPYIPGVMTPTE-IMQALEAGADIVKLFPAGA-LGG-------------PSYIKALRGP  145 (196)
T ss_dssp             EEE--ESS--HHHHHHHHHHTSEEEEEESSHHH-HHHHHHTT-SEEEETTTTT-TTH-------------HHHHHHHHTT
T ss_pred             EEE--CCCCCHHHHHHHHHcCCcccCCcCCHHH-HHHHHHCCCCEEEEecchh-cCc-------------HHHHHHHhcc
Confidence            111  22222100             0000112 2234467777777765432 111             4789999998


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      +|+++++..|||.. +++.++++. +.+|.+|+.+..+.++
T Consensus       146 ~p~~~~~ptGGV~~-~N~~~~l~ag~~~vg~Gs~L~~~~~i  185 (196)
T PF01081_consen  146 FPDLPFMPTGGVNP-DNLAEYLKAGAVAVGGGSWLFPKDLI  185 (196)
T ss_dssp             TTT-EEEEBSS--T-TTHHHHHTSTTBSEEEESGGGSHHHH
T ss_pred             CCCCeEEEcCCCCH-HHHHHHHhCCCEEEEECchhcCHHHH
Confidence            88999999999985 889999987 9999999877665443

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway

Probab=97.09  E-value=0.015  Score=55.43  Aligned_cols=144  Identities=13%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      ...|+-..+.+.+++.+.+.++...+.||..+-+..|-+.++..       --.+++.-.+.++++|+.+  ++.+.|-.
T Consensus       111 ~~i~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~~-------~~~~~~~D~~~i~avr~~~g~~~~l~vDa  183 (352)
T cd03325         111 DRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWID-------TSKKVDAAVERVAALREAVGPDIDIGVDF  183 (352)
T ss_pred             ceeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCcccCC-------CHHHHHHHHHHHHHHHHhhCCCCEEEEEC
Confidence            34456555667789888777776777899999998763321100       0023556677888888876  35566655


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+.+|-               + ..++-||+..+++++.. .+||.+.=.+.+++++
T Consensus       184 N~~~~~----~~A~~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pia~dEs~~~~~~~  242 (352)
T cd03325         184 HGRVSK----PMAKDLAKELEPYRLLFIE---------------E-PVLPENVEALAEIAART-TIPIATGERLFSRWDF  242 (352)
T ss_pred             CCCCCH----HHHHHHHHhccccCCcEEE---------------C-CCCccCHHHHHHHHHhC-CCCEEecccccCHHHH
Confidence            555653    3568899999998888872               1 11234788999999987 7998887788999999


Q ss_pred             HHHHhh--cCEEEEeh
Q psy2386         202 DLHLNY--IDGVMLGR  215 (311)
Q Consensus       202 ~~~l~~--adgVmigR  215 (311)
                      ..+++.  +|.|++--
T Consensus       243 ~~~~~~~~~d~v~~d~  258 (352)
T cd03325         243 KELLEDGAVDIIQPDI  258 (352)
T ss_pred             HHHHHhCCCCEEecCc
Confidence            999875  89888753

D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=97.09  E-value=0.0089  Score=54.11  Aligned_cols=158  Identities=13%  Similarity=0.097  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      .|++++++||+.|=+--.+-...   .|+-...+-..+.+.+.++.|.+.+++||++.+..|+.+.   +...+.++.+.
T Consensus        21 sA~~~e~~G~~ai~~s~~~~~~s---~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~---~~~~~~v~~~~   94 (243)
T cd00377          21 SARLAERAGFKAIYTSGAGVAAS---LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNA---LNVARTVRELE   94 (243)
T ss_pred             HHHHHHHcCCCEEEeccHHHHHh---cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCH---HHHHHHHHHHH
Confidence            46788889999998863222111   1333333445677888888888888999999999987643   25678899999


Q ss_pred             HcCCCEEEEecCcc-ccccCCCCcCCCCCcC-cHHHHHHHHHhC---CCCeEEEecCC-----CCHHHHHHHHh----h-
Q psy2386         143 SAGCRTFIVHARNA-FLKKLNPKQNRKIPIL-KYNFVYNLKKDF---PELEIIINGGI-----KTKKEIDLHLN----Y-  207 (311)
Q Consensus       143 ~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~-~~~~i~~i~~~~---~~ipvi~nGgI-----~s~~da~~~l~----~-  207 (311)
                      ++|+++|.+-+... ...|..|... ..++. ..+.|+.+++..   ++++|++-=|.     .+.+++.+..+    . 
T Consensus        95 ~~G~~gv~iED~~~~k~~g~~~~~~-~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AG  173 (243)
T cd00377          95 EAGAAGIHIEDQVGPKKCGHHGGKV-LVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAG  173 (243)
T ss_pred             HcCCEEEEEecCCCCccccCCCCCe-ecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcC
Confidence            99999999954431 0112111111 11111 123344444433   25677776333     35566655442    2 


Q ss_pred             cCEEEEehhhhhCCcchHHhHh
Q psy2386         208 IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       208 adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ||+|++=-..  ++.-++++.+
T Consensus       174 AD~v~v~~~~--~~~~~~~~~~  193 (243)
T cd00377         174 ADGIFVEGLK--DPEEIRAFAE  193 (243)
T ss_pred             CCEEEeCCCC--CHHHHHHHHh
Confidence            9999994222  5555555544

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=97.09  E-value=0.01  Score=54.63  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-...-..+.-.++++.+++.+  ++||.+-+...     +.+
T Consensus        15 iD~~~~~~~i~~l~~~Gv~gi~~~----------GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~-----~~~   79 (281)
T cd00408          15 VDLDALRRLVEFLIEAGVDGLVVL----------GTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGAN-----STR   79 (281)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------CCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCc-----cHH
Confidence            478889999999989999999888          2334445555555567777776665  57877765432     123


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE------EecCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII------INGGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi------~nGgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+.+...  ...+.       ..-+++.+++.+.. ++||+      ..|---+++.+.++.+
T Consensus        80 ~~i~~a~~a~~~Gad~v~v~pP~y--~~~~~-------~~~~~~~~~ia~~~-~~pi~iYn~P~~tg~~l~~~~~~~L~~  149 (281)
T cd00408          80 EAIELARHAEEAGADGVLVVPPYY--NKPSQ-------EGIVAHFKAVADAS-DLPVILYNIPGRTGVDLSPETIARLAE  149 (281)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCcC--CCCCH-------HHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHhc
Confidence            578999999999999999976542  11110       11245677777775 68876      3355667777777664

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.07  E-value=0.00098  Score=59.57  Aligned_cols=53  Identities=17%  Similarity=0.320  Sum_probs=41.3

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      +.+.++++...++|+|..|||+|.+++.++.+. ||.|.+|..+..||+ ..++.
T Consensus       171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~-~e~~~  224 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPD-LEEAL  224 (230)
T ss_dssp             HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH--HHHHH
T ss_pred             HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcch-HHHHH
Confidence            445555555558999999999999999999987 999999999999998 44433

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.01  Score=54.48  Aligned_cols=152  Identities=16%  Similarity=0.142  Sum_probs=96.6

Q ss_pred             CCCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeE
Q psy2386          43 AEEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDIT  118 (311)
Q Consensus        43 ~~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvs  118 (311)
                      ..+-||+|-+   +|+ |...++.++.+.++|+.+|.|-=-- .+|.+..--|-.+. +++...+=|++++++. +.++.
T Consensus        76 a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~-~pk~cgh~~gk~l~-~~~e~v~rIkAa~~a~~~~~fv  152 (289)
T COG2513          76 AVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQV-GPKRCGHLPGKELV-SIDEMVDRIKAAVEARRDPDFV  152 (289)
T ss_pred             hcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeecc-cchhcCCCCCCCcC-CHHHHHHHHHHHHHhccCCCeE
Confidence            4578999887   466 9999999999999999998884100 01111111233343 3444444445555544 56677


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC-
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG-  194 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg-  194 (311)
                      +=-|..---....++.++-++...++|+|.|-.++.+                 +.+.++++++++ ++|+.+|   +| 
T Consensus       153 i~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if~~al~-----------------~~e~i~~f~~av-~~pl~~N~t~~g~  214 (289)
T COG2513         153 IIARTDALLVEGLDDAIERAQAYVEAGADAIFPEALT-----------------DLEEIRAFAEAV-PVPLPANITEFGK  214 (289)
T ss_pred             EEeehHHHHhccHHHHHHHHHHHHHcCCcEEccccCC-----------------CHHHHHHHHHhc-CCCeeeEeeccCC
Confidence            7667532212224567899999999999999888775                 568899999998 5777666   33 


Q ss_pred             --CCCHHHHHHHHhhcCEEEEehhh
Q psy2386         195 --IKTKKEIDLHLNYIDGVMLGREA  217 (311)
Q Consensus       195 --I~s~~da~~~l~~adgVmigRa~  217 (311)
                        ..|.++..++  ++..|..|-.+
T Consensus       215 tp~~~~~~L~~~--Gv~~V~~~~~~  237 (289)
T COG2513         215 TPLLTVAELAEL--GVKRVSYGLTA  237 (289)
T ss_pred             CCCcCHHHHHhc--CceEEEECcHH
Confidence              3444333222  27888777443

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=97.06  E-value=0.0045  Score=54.45  Aligned_cols=148  Identities=21%  Similarity=0.294  Sum_probs=92.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      +.++|...|+..+.+..+.++++|+|.  +|+-=|.=+|+.   ++          =-++++++++.+++|+.|=+=.  
T Consensus         2 I~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~---~~----------g~~~i~~i~~~~~~~~DvHLMv--   66 (201)
T PF00834_consen    2 ISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNL---TF----------GPDIIKAIRKITDLPLDVHLMV--   66 (201)
T ss_dssp             EEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB----B-----------HHHHHHHHTTSSSEEEEEEES--
T ss_pred             eehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcc---cC----------CHHHHHHHhhcCCCcEEEEeee--
Confidence            578899999999999999999999985  555444322221   12          2355777888888898886643  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccc--------------------------------------------cccC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAF--------------------------------------------LKKL  161 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~--------------------------------------------~~G~  161 (311)
                      .+      ...+++.+.++|++.|++|.....                                            ..|+
T Consensus        67 ~~------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~  140 (201)
T PF00834_consen   67 EN------PERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGF  140 (201)
T ss_dssp             SS------GGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTT
T ss_pred             cc------HHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCC
Confidence            22      135677788889998888843210                                            0133


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      +|..  .. +.-++-|+++++..+    ++.+..=|||+. +.+.++.+. +|.+.+|++++++
T Consensus       141 ~Gq~--f~-~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~~-~~~~~~~~aGad~~V~Gs~iF~~  200 (201)
T PF00834_consen  141 GGQK--FI-PEVLEKIRELRKLIPENGLDFEIEVDGGINE-ENIKQLVEAGADIFVAGSAIFKA  200 (201)
T ss_dssp             SSB----H-GGHHHHHHHHHHHHHHHTCGSEEEEESSEST-TTHHHHHHHT--EEEESHHHHTS
T ss_pred             Cccc--cc-HHHHHHHHHHHHHHHhcCCceEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhCC
Confidence            3321  11 113455665554332    488999999986 577777765 9999999998764

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=97.06  E-value=0.0039  Score=59.24  Aligned_cols=99  Identities=16%  Similarity=0.249  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhccc-------cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC
Q psy2386         100 LLVSDCIKAMRDSV-------EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL  172 (311)
Q Consensus       100 ~~~~~iv~~v~~~~-------~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~  172 (311)
                      +.-.+.++.+++..       ...+.|-..+|..++     ..+.++.|.++|+|.|+|..-.    |++.        -
T Consensus        73 e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~-----~~er~~~L~~agvD~ivID~a~----g~s~--------~  135 (352)
T PF00478_consen   73 EEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDD-----DFERAEALVEAGVDVIVIDSAH----GHSE--------H  135 (352)
T ss_dssp             HHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTC-----HHHHHHHHHHTT-SEEEEE-SS----TTSH--------H
T ss_pred             HHHHHHHhhhccccccccccccccceEEEEecCCHH-----HHHHHHHHHHcCCCEEEccccC----ccHH--------H
Confidence            33445555655431       234445555554432     2678899999999999996443    2210        1


Q ss_pred             cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       173 ~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      -.+.++++++.+|++||| .|+|-|++.++.+++. ||+|-||=|
T Consensus       136 ~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aGad~vkVGiG  179 (352)
T PF00478_consen  136 VIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAGADAVKVGIG  179 (352)
T ss_dssp             HHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred             HHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcCCCEEEEecc
Confidence            246899999999889988 5779999999999987 999999844

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=97.05  E-value=0.013  Score=57.81  Aligned_cols=110  Identities=13%  Similarity=0.174  Sum_probs=78.0

Q ss_pred             hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386          99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                      ++.+.++++..++ .+.-+.|-++.           .+=++++.++|++.|-|..|.-  ..+         ..|.+...
T Consensus       145 ~~~l~~l~~~a~~-lGl~~lvEvh~-----------~~El~~al~~~a~iiGiNnRdL--~t~---------~vd~~~~~  201 (454)
T PRK09427        145 DEQYRQLAAVAHS-LNMGVLTEVSN-----------EEELERAIALGAKVIGINNRNL--RDL---------SIDLNRTR  201 (454)
T ss_pred             HHHHHHHHHHHHH-cCCcEEEEECC-----------HHHHHHHHhCCCCEEEEeCCCC--ccc---------eECHHHHH
Confidence            4555666655544 46655565542           1223445667888888888763  222         25778888


Q ss_pred             HHHHhCC-CCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         179 NLKKDFP-ELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       179 ~i~~~~~-~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++...+| ++.+|+-+||.|++|+..+...+|||.||.++|..|..-..+++.+
T Consensus       202 ~l~~~ip~~~~~vseSGI~t~~d~~~~~~~~davLiG~~lm~~~d~~~~~~~L~  255 (454)
T PRK09427        202 ELAPLIPADVIVISESGIYTHAQVRELSPFANGFLIGSSLMAEDDLELAVRKLI  255 (454)
T ss_pred             HHHhhCCCCcEEEEeCCCCCHHHHHHHHhcCCEEEECHHHcCCCCHHHHHHHHh
Confidence            8888776 4778999999999999997655999999999999999776666543

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=97.04  E-value=0.0066  Score=54.17  Aligned_cols=78  Identities=12%  Similarity=-0.000  Sum_probs=58.3

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +....+.|+|+|.+.+=..  .  + +.  ..+|...+.++++++.+ ++||++-||| +++++.++++. +|||.+-++
T Consensus       124 a~~A~~~gaDYv~~Gpv~t--~--t-K~--~~~p~gl~~l~~~~~~~-~iPvvAIGGI-~~~n~~~~~~~GA~giAvisa  194 (221)
T PRK06512        124 AMEIGELRPDYLFFGKLGA--D--N-KP--EAHPRNLSLAEWWAEMI-EIPCIVQAGS-DLASAVEVAETGAEFVALERA  194 (221)
T ss_pred             HHHhhhcCCCEEEECCCCC--C--C-CC--CCCCCChHHHHHHHHhC-CCCEEEEeCC-CHHHHHHHHHhCCCEEEEhHH
Confidence            4446689999999854321  0  0 11  12345678888888887 7999999999 89999999987 999999999


Q ss_pred             hhhCCcch
Q psy2386         217 AYKNPFLM  224 (311)
Q Consensus       217 ~l~~P~i~  224 (311)
                      ++..+...
T Consensus       195 i~~~~dp~  202 (221)
T PRK06512        195 VFDAHDPP  202 (221)
T ss_pred             hhCCCCHH
Confidence            98655543

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.02  E-value=0.0058  Score=57.89  Aligned_cols=107  Identities=11%  Similarity=0.155  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc-cccccCCCCcCCCCCcCcHHHH
Q psy2386          99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt-~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      ++...+.+..+++.+++||.++++.. +    .++..++++.++++|+|+|.+|.-- ....+..|.   ..+..-++.+
T Consensus        86 ~d~~~~~i~~~~~~~~~pvi~sI~g~-~----~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~---~~~~~~~eil  157 (334)
T PRK07565         86 PEEYLELIRRAKEAVDIPVIASLNGS-S----AGGWVDYARQIEQAGADALELNIYYLPTDPDISGA---EVEQRYLDIL  157 (334)
T ss_pred             HHHHHHHHHHHHHhcCCcEEEEeccC-C----HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccc---cHHHHHHHHH
Confidence            46666777777777789999999752 1    2256789999999999999996321 000111111   0111136788


Q ss_pred             HHHHHhCCCCeEEEe--cCCCCHHHHHHHHhh--cCEEEEe
Q psy2386         178 YNLKKDFPELEIIIN--GGIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       178 ~~i~~~~~~ipvi~n--GgI~s~~da~~~l~~--adgVmig  214 (311)
                      +++++.+ ++||++.  +++.+..++.+.++.  +|+|.+.
T Consensus       158 ~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        158 RAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             HHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence            9999887 7999976  566567777776654  9998773

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=97.01  E-value=0.012  Score=53.49  Aligned_cols=150  Identities=11%  Similarity=0.159  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHhCCCcEEEec-ceec--ccccCCc-----hhcccc-----CCCCCC-eEEEec-C---CCHHHHHHHH
Q psy2386           3 LTDRHCRMFHRQITRYSWLYTE-MFTT--QAILGNK-----KHCLDF-----NAEEHP-IAFQVG-D---NEPKKLAKSA   64 (311)
Q Consensus         3 ~td~~fR~l~~~~g~~~l~~te-mv~a--~~l~~~~-----~~~l~~-----~~~~~p-~~~Ql~-g---~~~~~~~~aa   64 (311)
                      .=|..+=+++.+-| .+.++|- -+++  .+.- ++     +.++..     ...+.| +++=+- |   ++|++..+.+
T Consensus        19 ayD~~sA~l~e~aG-~d~i~vGds~~~~~lG~p-Dt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a   96 (254)
T cd06557          19 AYDYPTAKLADEAG-VDVILVGDSLGMVVLGYD-STLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNA   96 (254)
T ss_pred             CCCHHHHHHHHHcC-CCEEEECHHHHHHHcCCC-CCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHH
Confidence            34666777777777 3555553 1111  1211 11     122211     234567 666552 3   4687765554


Q ss_pred             -HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-------------eccCCCCCc
Q psy2386          65 -KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-------------RIGIDDINS  130 (311)
Q Consensus        65 -~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-------------R~g~~~~~~  130 (311)
                       +.++++|+++|.|--|                   ....+.|++++++ ++||.-=+             +..-..++.
T Consensus        97 ~r~~~~aGa~aVkiEd~-------------------~~~~~~I~al~~a-gipV~gHiGL~pq~~~~~gg~~~~grt~~~  156 (254)
T cd06557          97 ARLMKEAGADAVKLEGG-------------------AEVAETIRALVDA-GIPVMGHIGLTPQSVNQLGGYKVQGKTEEE  156 (254)
T ss_pred             HHHHHHhCCeEEEEcCc-------------------HHHHHHHHHHHHc-CCCeeccccccceeeeccCCceeccCCHHH
Confidence             5566699999999522                   3556666777654 78876211             110011122


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      .+++++-++.++++|++.|.+-+-.                  -+.++++.+.+ ++|+|+-|
T Consensus       157 a~~~i~ra~a~~~AGA~~i~lE~v~------------------~~~~~~i~~~v-~iP~igiG  200 (254)
T cd06557         157 AERLLEDALALEEAGAFALVLECVP------------------AELAKEITEAL-SIPTIGIG  200 (254)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEcCCC------------------HHHHHHHHHhC-CCCEEEec
Confidence            4567888999999999999875442                  26789999998 79999877

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=96.98  E-value=0.017  Score=54.51  Aligned_cols=78  Identities=14%  Similarity=0.175  Sum_probs=59.3

Q ss_pred             HHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH-----hCC--CCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         141 VSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK-----DFP--ELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       141 l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~-----~~~--~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +.+. |++.|-|..|.  +..+         ..|.+...++..     .+|  ++.+|+.+||.|++|+..+.+. +|+|
T Consensus       246 Al~~~ga~iIGINNRd--L~Tf---------~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAv  314 (338)
T PLN02460        246 VLGIEGVELIGINNRS--LETF---------EVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAV  314 (338)
T ss_pred             HHhcCCCCEEEEeCCC--CCcc---------eECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEE
Confidence            3444 78888777776  2222         257777777776     332  4668999999999999999977 9999


Q ss_pred             EEehhhhhCCcchHHhHh
Q psy2386         212 MLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~  229 (311)
                      .||.+++..|..-..+.+
T Consensus       315 LVGEsLMr~~dp~~~l~~  332 (338)
T PLN02460        315 LVGESLVKQDDPGKGIAG  332 (338)
T ss_pred             EECHHHhCCCCHHHHHHH
Confidence            999999999997666654

>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]

Probab=96.98  E-value=0.012  Score=56.35  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=100.2

Q ss_pred             CCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386          46 HPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH  121 (311)
Q Consensus        46 ~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi  121 (311)
                      .+......+  ..++.+.++++.+.+.||+.+-+..||+...               .-.+.++++|++++  +.+.+-.
T Consensus       131 v~~y~~~~~~~~~~e~~~~~~~~~~~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDa  195 (372)
T COG4948         131 VRAYASGGGGEDPEEMAAEAARALVELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDA  195 (372)
T ss_pred             EEEEEecCCCCCCHHHHHHHHHHHHhcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeC
Confidence            334444443  3678888888888889999999999998653               34566778888774  5566665


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..    +...+++.+++.++.++-               + ..++-|.+..+++++.+ ++||.+.=-+.|..|+
T Consensus       196 n~~~~~~----~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~~PIa~gEs~~~~~~~  254 (372)
T COG4948         196 NGGWTLE----EAIRLARALEEYGLEWIE---------------E-PLPPDDLEGLRELRAAT-STPIAAGESVYTRWDF  254 (372)
T ss_pred             CCCcCHH----HHHHHHHHhcccCcceEE---------------C-CCCccCHHHHHHHHhcC-CCCEecCcccccHHHH
Confidence            5566653    357899999999977761               1 12335788899999987 5999999999999999


Q ss_pred             HHHHhh--cCEEEEe
Q psy2386         202 DLHLNY--IDGVMLG  214 (311)
Q Consensus       202 ~~~l~~--adgVmig  214 (311)
                      .++++.  +|.|++-
T Consensus       255 ~~l~~~~a~div~~d  269 (372)
T COG4948         255 RRLLEAGAVDIVQPD  269 (372)
T ss_pred             HHHHHcCCCCeecCC
Confidence            999986  9988873

>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA

Probab=96.95  E-value=0.023  Score=55.50  Aligned_cols=125  Identities=11%  Similarity=0.045  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~  131 (311)
                      +.+++++.+-|+...+.||..+-+..|                .+++.-.+.++++|+.++  +.+.|-..-+|+.    
T Consensus       194 ~~~~~~~~~~a~~~~~~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~----  253 (415)
T cd03324         194 GYSDEKLRRLCKEALAQGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDV----  253 (415)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----
Confidence            567888877777777789999998654                245555678888998874  4455554445554    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHhh--
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++..++++.+++.++.++-               + ..++-|++..+++++..+  ++||.+.-.+.|..++.++++.  
T Consensus       254 ~~A~~~~~~L~~~~l~~iE---------------E-P~~~~d~~~~~~L~~~~~~~~iPIa~gEs~~~~~~~~~ll~~~a  317 (415)
T cd03324         254 PEAIEWVKQLAEFKPWWIE---------------E-PTSPDDILGHAAIRKALAPLPIGVATGEHCQNRVVFKQLLQAGA  317 (415)
T ss_pred             HHHHHHHHHhhccCCCEEE---------------C-CCCCCcHHHHHHHHHhcccCCCceecCCccCCHHHHHHHHHcCC
Confidence            3578999999999988772               1 122357888889988762  4898887789999999999975  


Q ss_pred             cCEEEEe
Q psy2386         208 IDGVMLG  214 (311)
Q Consensus       208 adgVmig  214 (311)
                      +|.+++=
T Consensus       318 ~dil~~d  324 (415)
T cd03324         318 IDVVQID  324 (415)
T ss_pred             CCEEEeC
Confidence            8988864

rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=96.92  E-value=0.013  Score=53.48  Aligned_cols=99  Identities=14%  Similarity=0.294  Sum_probs=67.1

Q ss_pred             CHHHHHH-HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE-------EEEec--cC
Q psy2386          56 EPKKLAK-SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-------VKHRI--GI  125 (311)
Q Consensus        56 ~~~~~~~-aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs-------vKiR~--g~  125 (311)
                      ++++..+ |.+++++.|+++|.|--|                   ..+.+.++++.+ .++||.       ...|.  |+
T Consensus        90 ~~e~a~~na~rl~~eaGa~aVkiEgg-------------------~~~~~~i~~l~~-~gIpV~gHiGltPq~a~~~ggy  149 (263)
T TIGR00222        90 TPEQALKNAARVMQETGANAVKLEGG-------------------EWLVETVQMLTE-RGVPVVGHLGLTPQSVNILGGY  149 (263)
T ss_pred             CHHHHHHHHHHHHHHhCCeEEEEcCc-------------------HhHHHHHHHHHH-CCCCEEEecCCCceeEeecCCe
Confidence            4766544 445667799999999622                   334455666665 378887       33332  22


Q ss_pred             C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         126 D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       126 ~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      .    ..+..+.+++-++.++++|++.|.+-+-.                  -+.+++|.+.+ ++|+|+-|
T Consensus       150 ~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp------------------~~~a~~It~~l-~iP~iGIG  202 (263)
T TIGR00222       150 KVQGKDEEAAKKLLEDALALEEAGAQLLVLECVP------------------VELAAKITEAL-AIPVIGIG  202 (263)
T ss_pred             eecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCc------------------HHHHHHHHHhC-CCCEEeec
Confidence            1    11223467888999999999999875442                  37889999998 79998876

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.89  E-value=0.0089  Score=56.47  Aligned_cols=94  Identities=14%  Similarity=0.319  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386          99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                      ++...+.++.+++...+.+.    ++...     +..+.++.+.++|++.|.+....    |.+        ..-++.++
T Consensus        69 ~~~~~~~i~~vk~~l~v~~~----~~~~~-----~~~~~~~~l~eagv~~I~vd~~~----G~~--------~~~~~~i~  127 (325)
T cd00381          69 IEEQAEEVRKVKGRLLVGAA----VGTRE-----DDKERAEALVEAGVDVIVIDSAH----GHS--------VYVIEMIK  127 (325)
T ss_pred             HHHHHHHHHHhccCceEEEe----cCCCh-----hHHHHHHHHHhcCCCEEEEECCC----CCc--------HHHHHHHH
Confidence            35556666676654333222    33221     24678888999999999886432    110        01257899


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      ++++..|++||++ |++.|++++.++++. ||+|.+|
T Consensus       128 ~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg  163 (325)
T cd00381         128 FIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKVG  163 (325)
T ss_pred             HHHHHCCCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence            9999876788887 999999999999987 9999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK14017 galactonate dehydratase; Provisional

Probab=96.89  E-value=0.026  Score=54.38  Aligned_cols=148  Identities=11%  Similarity=0.085  Sum_probs=103.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi  121 (311)
                      +..|+-..+++.+|+++.+.++...+.||..+-+..|=+.+.  .   +  -..+++.-.+.++++|+.++  +.+.|-.
T Consensus       112 ~~i~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~~~~~~--~---~--~~~~~~~d~~~i~avr~~~g~~~~l~vDa  184 (382)
T PRK14017        112 DRIRVYSWIGGDRPADVAEAARARVERGFTAVKMNGTEELQY--I---D--SPRKVDAAVARVAAVREAVGPEIGIGVDF  184 (382)
T ss_pred             ceeeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCccc--c---c--cHHHHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            344666666677999988777777778999999975311100  0   0  01235666788889998873  5566655


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+.+|-               + ..++-|++..+++++.. .+||.+.=.+.|+.++
T Consensus       185 N~~w~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pIa~dEs~~~~~~~  243 (382)
T PRK14017        185 HGRVHK----PMAKVLAKELEPYRPMFIE---------------E-PVLPENAEALPEIAAQT-SIPIATGERLFSRWDF  243 (382)
T ss_pred             CCCCCH----HHHHHHHHhhcccCCCeEE---------------C-CCCcCCHHHHHHHHhcC-CCCEEeCCccCCHHHH
Confidence            555654    3568899999998888772               1 12234788899999987 7999988889999999


Q ss_pred             HHHHhh--cCEEEEehhhhh
Q psy2386         202 DLHLNY--IDGVMLGREAYK  219 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~  219 (311)
                      .++++.  +|.|.+--.-.+
T Consensus       244 ~~li~~~a~d~v~~d~~~~G  263 (382)
T PRK14017        244 KRVLEAGGVDIIQPDLSHAG  263 (382)
T ss_pred             HHHHHcCCCCeEecCccccC
Confidence            999975  888887543333

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.87  E-value=0.0051  Score=54.44  Aligned_cols=82  Identities=12%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|+++|++..-.....|            ..+.++.+++.+ ++||+.-|.|.+.+++..+++. ||+|
T Consensus        32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g------------~~~~~~~i~~~v-~iPi~~~~~i~~~~~v~~~~~~Gad~v   98 (217)
T cd00331          32 DPVEIAKAYEKAGAAAISVLTEPKYFQG------------SLEDLRAVREAV-SLPVLRKDFIIDPYQIYEARAAGADAV   98 (217)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCccccCC------------CHHHHHHHHHhc-CCCEEECCeecCHHHHHHHHHcCCCEE
Confidence            4689999999999999998755432222            557788888877 8999998999999999999887 9999


Q ss_pred             EEehhhhhCCcchHHhH
Q psy2386         212 MLGREAYKNPFLMSNFD  228 (311)
Q Consensus       212 migRa~l~~P~i~~~~~  228 (311)
                      .++-..+.. ..+.++.
T Consensus        99 ~l~~~~~~~-~~~~~~~  114 (217)
T cd00331          99 LLIVAALDD-EQLKELY  114 (217)
T ss_pred             EEeeccCCH-HHHHHHH
Confidence            998776643 3334443

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=96.86  E-value=0.1  Score=46.79  Aligned_cols=150  Identities=16%  Similarity=0.175  Sum_probs=94.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ..++.++|...|+..+.+-.+.++++|+|.+-+-  =|  +|+-     .+|      |+    +++++++  +.|+.|=
T Consensus        12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tfG------p~----~i~~i~~--~~~~DvH   74 (228)
T PRK08091         12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFF-----TVG------AI----AIKQFPT--HCFKDVH   74 (228)
T ss_pred             CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCcc-----ccC------HH----HHHHhCC--CCCEEEE
Confidence            3578899999999999999999999998875553  23  3432     122      33    3455543  5565554


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC----------------------------ccc---------------
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR----------------------------NAF---------------  157 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R----------------------------t~~---------------  157 (311)
                      +=+  .+      ..++++.+.++|++.|++|.-                            |..               
T Consensus        75 LMv--~~------P~~~i~~~~~aGad~It~H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLi  146 (228)
T PRK08091         75 LMV--RD------QFEVAKACVAAGADIVTLQVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQI  146 (228)
T ss_pred             ecc--CC------HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEE
Confidence            332  11      246777778888888887732                            100               


Q ss_pred             ---cccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         158 ---LKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       158 ---~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                         ..|+.|..  .. +.-++-|+++++..    .++.|-.=|||+ .+.+.++.+. ||.+.+|+++++++..
T Consensus       147 MtV~PGfgGQ~--f~-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSalF~~~d~  216 (228)
T PRK08091        147 LTLDPRTGTKA--PS-DLILDRVIQVENRLGNRRVEKLISIDGSMT-LELASYLKQHQIDWVVSGSALFSQGEL  216 (228)
T ss_pred             EEECCCCCCcc--cc-HHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHCCCCEEEEChhhhCCCCH
Confidence               01333321  11 11245566555432    145678889998 6788888876 9999999999877663

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=96.85  E-value=0.013  Score=51.79  Aligned_cols=86  Identities=13%  Similarity=0.081  Sum_probs=64.6

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+-+..+++.|+|+|.+-+-..+.   + |+. . ++.-|+.+..+++.. .+|+++-|||. ++.+.+.++. +|||.+
T Consensus       114 ~eea~~A~~~g~DYv~~GpifpT~---t-K~~-~-~~~G~~~l~~~~~~~-~iP~vAIGGi~-~~nv~~v~~~Ga~gVAv  185 (211)
T COG0352         114 LEEALEAEELGADYVGLGPIFPTS---T-KPD-A-PPLGLEGLREIRELV-NIPVVAIGGIN-LENVPEVLEAGADGVAV  185 (211)
T ss_pred             HHHHHHHHhcCCCEEEECCcCCCC---C-CCC-C-CccCHHHHHHHHHhC-CCCEEEEcCCC-HHHHHHHHHhCCCeEEe
Confidence            355777888999999875432210   0 111 2 567899999999887 69999999996 6889999987 999999


Q ss_pred             ehhhhhCCcchHHhH
Q psy2386         214 GREAYKNPFLMSNFD  228 (311)
Q Consensus       214 gRa~l~~P~i~~~~~  228 (311)
                      -|+++..+..-....
T Consensus       186 vsai~~a~d~~~a~~  200 (211)
T COG0352         186 VSAITSAADPAAAAK  200 (211)
T ss_pred             hhHhhcCCCHHHHHH
Confidence            999988776554443

>PRK06852 aldolase; Validated

Probab=96.81  E-value=0.046  Score=51.01  Aligned_cols=155  Identities=11%  Similarity=0.103  Sum_probs=91.5

Q ss_pred             CCCeEEEecCC---------CHHH-HHHHHHHHHHcC------CCE--EEeccCCCccccccCcccCcccCChHHHHHHH
Q psy2386          45 EHPIAFQVGDN---------EPKK-LAKSAKIIQKWG------YDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCI  106 (311)
Q Consensus        45 ~~p~~~Ql~g~---------~~~~-~~~aa~~~~~~g------~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv  106 (311)
                      +.|+|+.|.++         +|.. +....+.+.++|      +|+  +-+|.|.....           +..+.+.+|+
T Consensus        92 ~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~-----------~ml~~l~~v~  160 (304)
T PRK06852         92 DVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYES-----------EMLSEAAQII  160 (304)
T ss_pred             CCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHH-----------HHHHHHHHHH
Confidence            67899999875         3422 222234455566      665  45566633221           1234556666


Q ss_pred             HHHhccccceeEEEE-eccC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         107 KAMRDSVEIDITVKH-RIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       107 ~~v~~~~~~pvsvKi-R~g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      ++..+ .++|+.+=+ -.|.  .+....+.+...++...+.|+|.|.+---+.  .+          .-+-+..+++.+.
T Consensus       161 ~ea~~-~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~--~~----------~g~~e~f~~vv~~  227 (304)
T PRK06852        161 YEAHK-HGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKK--EG----------ANPAELFKEAVLA  227 (304)
T ss_pred             HHHHH-hCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCc--CC----------CCCHHHHHHHHHh
Confidence            66555 489976521 1132  2222233456667888899999997642211  00          0244667777777


Q ss_pred             CCCCeEEEecCCC-CHHHHHHHH----h-h-cCEEEEehhhhhCCcc
Q psy2386         184 FPELEIIINGGIK-TKKEIDLHL----N-Y-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       184 ~~~ipvi~nGgI~-s~~da~~~l----~-~-adgVmigRa~l~~P~i  223 (311)
                      +..+||+..||=. +.+++.++.    + . +.||.+||=.+..|.-
T Consensus       228 ~g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p  274 (304)
T PRK06852        228 AGRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLD  274 (304)
T ss_pred             CCCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCc
Confidence            6248988888766 445555544    3 3 8999999999888653

>PRK08185 hypothetical protein; Provisional

Probab=96.81  E-value=0.082  Score=48.93  Aligned_cols=162  Identities=15%  Similarity=0.248  Sum_probs=89.8

Q ss_pred             CCCCeEEEecCCC----HHHHHHHHH-HHHHcCCCEEEecc-CCCcc----ccccCcccCcc--------cCChHHHHHH
Q psy2386          44 EEHPIAFQVGDNE----PKKLAKSAK-IIQKWGYDEINLNC-GCPSN----RVQNGFFGAIL--------MTKPLLVSDC  105 (311)
Q Consensus        44 ~~~p~~~Ql~g~~----~~~~~~aa~-~~~~~g~d~IdiN~-gCP~~----~v~~~~~G~~L--------l~~~~~~~~i  105 (311)
                      ...|+|+|+.-..    +..+...++ .++++.+. |-||+ .|...    ...+.|+.|-+        .++-++..++
T Consensus        36 ~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP-V~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~v  114 (283)
T PRK08185         36 NNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP-FVIHLDHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEV  114 (283)
T ss_pred             hCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH
Confidence            3578888885322    223555554 33444443 33443 12211    11133332322        2344555566


Q ss_pred             HHHHhccccceeEEEEe-ccCCCCC-----c---HHHHHHHHHHHHHcCCCEEEE-----ecCccccccCCCCcCCCCCc
Q psy2386         106 IKAMRDSVEIDITVKHR-IGIDDIN-----S---YDFVRDFVGTVSSAGCRTFIV-----HARNAFLKKLNPKQNRKIPI  171 (311)
Q Consensus       106 v~~v~~~~~~pvsvKiR-~g~~~~~-----~---~~~~~e~~~~l~~~G~~~itv-----h~Rt~~~~G~~g~~~~~~~~  171 (311)
                      ++-++. .+++|-..+- +|..++.     +   +.+..+..+.+++.|+|++.+     ||-..   +      ...+.
T Consensus       115 v~~a~~-~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~---~------~~kp~  184 (283)
T PRK08185        115 VELAHK-VGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP---K------DKKPE  184 (283)
T ss_pred             HHHHHH-cCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC---C------CCCCC
Confidence            655544 3777766552 2221100     0   112334444456679999998     66532   1      01244


Q ss_pred             CcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         172 LKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                      .+++.++++++.+ ++|++.-||+..+ ++++++... +.-|=|++.+
T Consensus       185 L~~e~l~~I~~~~-~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l  231 (283)
T PRK08185        185 LQMDLLKEINERV-DIPLVLHGGSANPDAEIAESVQLGVGKINISSDM  231 (283)
T ss_pred             cCHHHHHHHHHhh-CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHH
Confidence            7899999999998 8999999999665 455666655 7778888776

>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3

Probab=96.80  E-value=0.026  Score=53.88  Aligned_cols=124  Identities=11%  Similarity=0.098  Sum_probs=92.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~  133 (311)
                      +++++.+-++...+.||..+-+-.|                .+++.-.+.++++|+.++  +.+.|-..-+|+.    ++
T Consensus       138 ~~e~~~~~a~~~~~~Gf~~~Kikvg----------------~~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~----~~  197 (352)
T cd03328         138 DDDRLREQLSGWVAQGIPRVKMKIG----------------RDPRRDPDRVAAARRAIGPDAELFVDANGAYSR----KQ  197 (352)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeecC----------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HH
Confidence            6787877777677789999998643                124556677888888874  5566655555654    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh--CCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD--FPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~--~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ..++++.+++.++.++               ++ ..++-|++..+++++.  . ++||.+.=.+.|..|+.++++.  +|
T Consensus       198 A~~~~~~l~~~~~~~~---------------Ee-P~~~~d~~~~~~l~~~~~~-~iPIa~gE~~~~~~~~~~li~~~a~d  260 (352)
T cd03328         198 ALALARAFADEGVTWF---------------EE-PVSSDDLAGLRLVRERGPA-GMDIAAGEYAYTLAYFRRLLEAHAVD  260 (352)
T ss_pred             HHHHHHHHHHhCcchh---------------hC-CCChhhHHHHHHHHhhCCC-CCCEEecccccCHHHHHHHHHcCCCC
Confidence            7899999999888766               11 1233478889999998  6 6999987789999999999975  99


Q ss_pred             EEEEehh
Q psy2386         210 GVMLGRE  216 (311)
Q Consensus       210 gVmigRa  216 (311)
                      .|++==.
T Consensus       261 iv~~d~~  267 (352)
T cd03328         261 VLQADVT  267 (352)
T ss_pred             EEecCcc
Confidence            8887533

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.77  E-value=0.0056  Score=61.06  Aligned_cols=68  Identities=21%  Similarity=0.430  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|++.|.+..-    +|.+        ...|+.|+++++.+|++||++ |+|.|+++++.+.+. ||+|.
T Consensus       242 ~~~~~~~l~~ag~d~i~id~a----~G~s--------~~~~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aGad~I~  308 (495)
T PTZ00314        242 DIERAAALIEAGVDVLVVDSS----QGNS--------IYQIDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAGADGLR  308 (495)
T ss_pred             HHHHHHHHHHCCCCEEEEecC----CCCc--------hHHHHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence            368899999999999998542    1211        124789999999987888887 999999999999987 99998


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       309 vg  310 (495)
T PTZ00314        309 IG  310 (495)
T ss_pred             EC
Confidence            65

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=96.75  E-value=0.12  Score=47.74  Aligned_cols=153  Identities=15%  Similarity=0.157  Sum_probs=97.9

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .+...|+++++++.+.++..+-++.+++.|+|+|-+-.  |...          .-+.+-+.+-.+.+.+++++|+.+=-
T Consensus        67 ~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~--P~~~----------~~s~~~l~~y~~~ia~~~~~pi~iYn  134 (289)
T PF00701_consen   67 AAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP--PYYF----------KPSQEELIDYFRAIADATDLPIIIYN  134 (289)
T ss_dssp             HTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE--STSS----------SCCHHHHHHHHHHHHHHSSSEEEEEE
T ss_pred             ccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec--cccc----------cchhhHHHHHHHHHHhhcCCCEEEEE
Confidence            45578999999999999999999999999999999853  4321          13466677888888888899998865


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~  199 (311)
                      .......+-   ..+.+.++.+.+ +-++...+                  .|+..+.++.... +++. +.+|   +-+
T Consensus       135 ~P~~tg~~l---s~~~l~~L~~~~nv~giK~s~------------------~~~~~~~~~~~~~~~~~~-v~~G---~d~  189 (289)
T PF00701_consen  135 NPARTGNDL---SPETLARLAKIPNVVGIKDSS------------------GDLERLIQLLRAVGPDFS-VFCG---DDE  189 (289)
T ss_dssp             BHHHHSSTS---HHHHHHHHHTSTTEEEEEESS------------------SBHHHHHHHHHHSSTTSE-EEES---SGG
T ss_pred             CCCccccCC---CHHHHHHHhcCCcEEEEEcCc------------------hhHHHHHHHhhhcccCee-eecc---ccc
Confidence            442222111   245566666632 22332211                  2555555655554 2343 5566   222


Q ss_pred             HHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         200 EIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       200 da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      .+...+. +++|++.|-+.+ -|.++.++.+.+.
T Consensus       190 ~~~~~l~~G~~G~is~~~n~-~P~~~~~i~~~~~  222 (289)
T PF00701_consen  190 LLLPALAAGADGFISGLANV-FPELIVEIYDAFQ  222 (289)
T ss_dssp             GHHHHHHTTSSEEEESGGGT-HHHHHHHHHHHHH
T ss_pred             cccccccccCCEEEEccccc-ChHHHHHHHHHHH
Confidence            2344444 499999998776 4777777766554

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=96.73  E-value=0.02  Score=53.77  Aligned_cols=113  Identities=16%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             CCCCCeEE-Ee----cCCCHHHHHHHHH-HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          43 AEEHPIAF-QV----GDNEPKKLAKSAK-IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        43 ~~~~p~~~-Ql----~g~~~~~~~~aa~-~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      ....|+++ -+    ++.+|++..+.|. ++++.|+++|.|--|.                  ....++++++.+ .++|
T Consensus        93 ga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~~~~~~I~~l~~-~GIP  153 (332)
T PLN02424         93 GANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------PSRVTAAKAIVE-AGIA  153 (332)
T ss_pred             cCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------HHHHHHHHHHHH-cCCC
Confidence            34566655 22    2357777666565 4578999999996332                  223466666663 4899


Q ss_pred             eEEEEec---------cCC----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         117 ITVKHRI---------GID----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       117 vsvKiR~---------g~~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      |.-=+-+         |+.    ..+..+.+++-++.++++|+..|.+-+-.                  -+.+++|.+.
T Consensus       154 V~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~Vp------------------~~la~~It~~  215 (332)
T PLN02424        154 VMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLECVP------------------APVAAAITSA  215 (332)
T ss_pred             EEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCc------------------HHHHHHHHHh
Confidence            8732211         111    11223467788999999999999886553                  2478899999


Q ss_pred             CCCCeEEEec
Q psy2386         184 FPELEIIING  193 (311)
Q Consensus       184 ~~~ipvi~nG  193 (311)
                      + +||+|+-|
T Consensus       216 l-~IPtIGIG  224 (332)
T PLN02424        216 L-QIPTIGIG  224 (332)
T ss_pred             C-CCCEEeec
Confidence            8 79999876

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=96.71  E-value=0.023  Score=50.35  Aligned_cols=82  Identities=9%  Similarity=-0.016  Sum_probs=59.4

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +..+++.|+|++.+.+-..+..    ++ .+.++..|+.+.++.+...++||++-|||. ++++.++++. ++||.+-++
T Consensus       115 ~~~A~~~gaDYi~lgpvf~T~t----K~-~~~~~~G~~~l~~~~~~~~~~PV~AiGGI~-~~ni~~l~~~Ga~GiAvisa  188 (211)
T PRK03512        115 IDVALAARPSYIALGHVFPTQT----KQ-MPSAPQGLAQLARHVERLADYPTVAIGGIS-LERAPAVLATGVGSIAVVSA  188 (211)
T ss_pred             HHHHhhcCCCEEEECCccCCCC----CC-CCCCCCCHHHHHHHHHhcCCCCEEEECCCC-HHHHHHHHHcCCCEEEEhhH
Confidence            5666788999999865432100    11 123446788888887763369999999998 7889888876 999999999


Q ss_pred             hhhCCcchH
Q psy2386         217 AYKNPFLMS  225 (311)
Q Consensus       217 ~l~~P~i~~  225 (311)
                      ++..+..-.
T Consensus       189 i~~~~d~~~  197 (211)
T PRK03512        189 ITQAADWRA  197 (211)
T ss_pred             hhCCCCHHH
Confidence            986665443

>cd03322 rpsA The starvation sensing protein RpsA from E

Probab=96.71  E-value=0.042  Score=52.57  Aligned_cols=128  Identities=9%  Similarity=0.045  Sum_probs=93.2

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR  122 (311)
                      ..|+-....+.+++.+.+.++...+.||..+-+..                       .+.++++|+.++  +.+.|...
T Consensus       115 ~v~~ya~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN  171 (361)
T cd03322         115 GIMVYSHASGRDIPELLEAVERHLAQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVH  171 (361)
T ss_pred             eeeEEEeCCCCCHHHHHHHHHHHHHcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECC
Confidence            34444445567788887777766678999988742                       466888888773  55666655


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.++.++-               + ..++-|++..+++++.. .+||.+.=.+.|+.++.
T Consensus       172 ~~w~~----~~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~L~~~~-~~pia~gE~~~~~~~~~  230 (361)
T cd03322         172 HRLTP----NQAARFGKDVEPYRLFWME---------------D-PTPAENQEAFRLIRQHT-ATPLAVGEVFNSIWDWQ  230 (361)
T ss_pred             CCCCH----HHHHHHHHHhhhcCCCEEE---------------C-CCCcccHHHHHHHHhcC-CCCEEeccCCcCHHHHH
Confidence            55654    3568899999998888772               1 12234788899999987 69988877889999999


Q ss_pred             HHHhh--cCEEEEehh
Q psy2386         203 LHLNY--IDGVMLGRE  216 (311)
Q Consensus       203 ~~l~~--adgVmigRa  216 (311)
                      +++..  +|.+++-=.
T Consensus       231 ~~i~~~a~di~~~d~~  246 (361)
T cd03322         231 NLIQERLIDYIRTTVS  246 (361)
T ss_pred             HHHHhCCCCEEecCcc
Confidence            99975  888877533

coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=96.69  E-value=0.0091  Score=51.36  Aligned_cols=72  Identities=17%  Similarity=0.158  Sum_probs=53.3

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      ++.+.+.|+|++.+.+-....   | ++. + ++..|+.+.++++.. ++||++-||| +++++.++.+. ++||.+-|+
T Consensus       108 ~~~a~~~g~dYv~~gpvf~T~---s-k~~-~-~~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~Ga~gvAvi~a  179 (180)
T PF02581_consen  108 AREAEELGADYVFLGPVFPTS---S-KPG-A-PPLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAGADGVAVISA  179 (180)
T ss_dssp             HHHHHHCTTSEEEEETSS--S---S-SSS---TTCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT-SEEEESHH
T ss_pred             HHHhhhcCCCEEEECCccCCC---C-Ccc-c-cccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEee
Confidence            777889999999987643211   0 111 1 557899999999998 6999999999 68999998876 999999887


Q ss_pred             h
Q psy2386         217 A  217 (311)
Q Consensus       217 ~  217 (311)
                      +
T Consensus       180 I  180 (180)
T PF02581_consen  180 I  180 (180)
T ss_dssp             H
T ss_pred             C
Confidence            4

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1

Probab=96.68  E-value=0.049  Score=52.68  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+++++.+.++...+.||..+-|..|-               .+++.-.+.++++|+.+  ++.+.|-..-+|+.    +
T Consensus       159 ~~~~~~~~~a~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~----~  219 (385)
T cd03326         159 DDLGRLRDEMRRYLDRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDL----E  219 (385)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----H
Confidence            367778777776777899999996541               23455567788888877  45666666656654    2


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c--
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I--  208 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a--  208 (311)
                      +..++++.+++.++.+|-               + ..++-|++..+++++.. ++||.+.=.+.++.++.++++.  |  
T Consensus       220 ~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~L~~~~-~iPIa~gEs~~~~~~~~~li~~~a~~~  282 (385)
T cd03326         220 TAIAYAKALAPYGLRWYE---------------E-PGDPLDYALQAELADHY-DGPIATGENLFSLQDARNLLRYGGMRP  282 (385)
T ss_pred             HHHHHHHHhhCcCCCEEE---------------C-CCCccCHHHHHHHHhhC-CCCEEcCCCcCCHHHHHHHHHhCCccc
Confidence            568899999998888772               1 12335889999999988 7999998899999999999976  5  


Q ss_pred             --CEEEEe
Q psy2386         209 --DGVMLG  214 (311)
Q Consensus       209 --dgVmig  214 (311)
                        |.|++=
T Consensus       283 ~~div~~d  290 (385)
T cd03326         283 DRDVLQFD  290 (385)
T ss_pred             cCCEEEeC
Confidence              888774

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=96.64  E-value=0.14  Score=47.68  Aligned_cols=156  Identities=14%  Similarity=0.111  Sum_probs=96.9

Q ss_pred             CCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhcc-ccceeE
Q psy2386          44 EEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDIT  118 (311)
Q Consensus        44 ~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvs  118 (311)
                      .+.||++=+   +|+.+ ...+.++.+.++|+.+|.|-=.. |..+--- ..|..-+-+++...+-+++++++ .+.++.
T Consensus        74 ~~lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~-~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~  151 (290)
T TIGR02321        74 VSIPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDKTFPKDTSLR-TDGRQELVRIEEFQGKIAAATAARADRDFV  151 (290)
T ss_pred             cCCCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCCCCCcccccc-cCCCccccCHHHHHHHHHHHHHhCCCCCEE
Confidence            367888877   36666 58999999999999999997543 2211000 01212234555555555555544 355677


Q ss_pred             EEEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec---
Q psy2386         119 VKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING---  193 (311)
Q Consensus       119 vKiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG---  193 (311)
                      +=-|+.-- .....++.++-++...++|+|.|-+++..                .+-+.+.++.+.++ .+||..+.   
T Consensus       152 I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~----------------~~~~ei~~~~~~~~~p~pv~~~~~~~  215 (290)
T TIGR02321       152 VIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQ----------------KTPDEILAFVKSWPGKVPLVLVPTAY  215 (290)
T ss_pred             EEEEeccccccCCHHHHHHHHHHHHHcCCCEEEecCCC----------------CCHHHHHHHHHhcCCCCCeEEecCCC
Confidence            77776421 12234567888999999999999998742                14577888888873 26776543   


Q ss_pred             CCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         194 GIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       194 gI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      ...|.++..++= ....|..|..++
T Consensus       216 p~~~~~~l~~lg-~~~~v~~g~~~~  239 (290)
T TIGR02321       216 PQLTEADIAALS-KVGIVIYGNHAI  239 (290)
T ss_pred             CCCCHHHHHHhc-CCcEEEEChHHH
Confidence            344555554431 145577774443

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases

Probab=96.61  E-value=0.094  Score=50.26  Aligned_cols=135  Identities=12%  Similarity=0.165  Sum_probs=89.2

Q ss_pred             CCCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ..|+-..+...+++.. .++.+...+.||..+-+-.|            .   .+++.-.+.++++++.++-  .+++++
T Consensus       130 ~v~~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg------------~---~~~~~d~~~v~~~re~~g~--~~~l~~  192 (368)
T TIGR02534       130 SVDVTWTLASGDTDRDIAEAEERIEEKRHRSFKLKIG------------A---RDPADDVAHVVAIAKALGD--RASVRV  192 (368)
T ss_pred             ceEEEEEEeCCCHHHHHHHHHHHHHhcCcceEEEEeC------------C---CCcHHHHHHHHHHHHhcCC--CcEEEE
Confidence            4455555555565544 44444445679999988543            1   2455556777888887643  234444


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      .....-+.++..++++.+++.++.+|-               + ..++-|++..+++++.. .+||.+.-.+.++.|+.+
T Consensus       193 DaN~~~~~~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~~  255 (368)
T TIGR02534       193 DVNAAWDERTALHYLPQLADAGVELIE---------------Q-PTPAENREALARLTRRF-NVPIMADESVTGPADALA  255 (368)
T ss_pred             ECCCCCCHHHHHHHHHHHHhcChhheE---------------C-CCCcccHHHHHHHHHhC-CCCEEeCcccCCHHHHHH
Confidence            222222234578899999998877661               1 11234788888999987 799999888999999999


Q ss_pred             HHhh--cCEEEE
Q psy2386         204 HLNY--IDGVML  213 (311)
Q Consensus       204 ~l~~--adgVmi  213 (311)
                      +++.  +|.|.+
T Consensus       256 ~~~~~~~d~~~~  267 (368)
T TIGR02534       256 IAKASAADVFAL  267 (368)
T ss_pred             HHHhCCCCEEEE
Confidence            9975  899887

This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.58  E-value=0.11  Score=48.12  Aligned_cols=113  Identities=14%  Similarity=0.255  Sum_probs=74.1

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-c-cCCCC-----CcHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCC
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-I-GIDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNR  167 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~-g~~~~-----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~  167 (311)
                      .+|-+...++++..+. .+++|-.-+- + |..+.     ..+-+..+..+.+++.|+|.+.+.=.|.  .| |.     
T Consensus       111 eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~--HG~Y~-----  182 (283)
T PRK07998        111 EENIAFTKEAVDFAKS-YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNV--HGLED-----  182 (283)
T ss_pred             HHHHHHHHHHHHHHHH-cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcccc--ccCCC-----
Confidence            3566777777777665 4777644432 2 21111     0011334555666889999998654442  12 11     


Q ss_pred             CCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhhh
Q psy2386         168 KIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~l  218 (311)
                       .|..|++.+++|++.+ ++|++.-||=..+ +++++.+.. +..|=|++.+.
T Consensus       183 -~p~l~~~~l~~I~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~  233 (283)
T PRK07998        183 -IPRIDIPLLKRIAEVS-PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLR  233 (283)
T ss_pred             -CCCcCHHHHHHHHhhC-CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHH
Confidence             1347999999999998 7999999987766 566777766 99999998873

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=96.57  E-value=0.42  Score=44.48  Aligned_cols=78  Identities=15%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             HHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC--CCCHHHHHHHHhh-cCEEE
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG--IKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg--I~s~~da~~~l~~-adgVm  212 (311)
                      -+..+.+.|+|+|.+.=.+.  .| |.+    ..++.+++.++++++.++++|+++-||  |. .+++.++++. ++.|-
T Consensus       158 ea~~f~~tgvD~LAv~iG~v--HG~y~t----~~k~l~~e~L~~i~~~~~~iPlVlhGGSGi~-~e~~~~~i~~Gi~KiN  230 (293)
T PRK07315        158 DAKAMVETGIDFLAAGIGNI--HGPYPE----NWEGLDLDHLEKLTEAVPGFPIVLHGGSGIP-DDQIQEAIKLGVAKVN  230 (293)
T ss_pred             HHHHHHHcCCCEEeeccccc--cccCCC----CCCcCCHHHHHHHHHhccCCCEEEECCCCCC-HHHHHHHHHcCCCEEE
Confidence            34455588999997642211  11 110    123589999999999984499999998  75 4778888876 99999


Q ss_pred             EehhhhhCC
Q psy2386         213 LGREAYKNP  221 (311)
Q Consensus       213 igRa~l~~P  221 (311)
                      |++.+..++
T Consensus       231 v~T~i~~~~  239 (293)
T PRK07315        231 VNTECQIAF  239 (293)
T ss_pred             EccHHHHHH
Confidence            999998733

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=96.55  E-value=0.049  Score=49.61  Aligned_cols=88  Identities=16%  Similarity=0.079  Sum_probs=56.6

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHHH-HH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDFV-GT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~~-~~  140 (311)
                      .|++++++|||.|=  .|-....+. -|+-....-..+.+...+++|++.++.| |++-+-.|... ++.++..+.+ +.
T Consensus        24 sA~l~e~aG~d~i~--vGds~~~~~-lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~-~~~~~av~~a~r~   99 (254)
T cd06557          24 TAKLADEAGVDVIL--VGDSLGMVV-LGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQ-TSPEQALRNAARL   99 (254)
T ss_pred             HHHHHHHcCCCEEE--ECHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCccc-CCHHHHHHHHHHH
Confidence            46788899999994  454433322 2344445556788888888998888889 77666323221 2233444554 44


Q ss_pred             HHHcCCCEEEEecC
Q psy2386         141 VSSAGCRTFIVHAR  154 (311)
Q Consensus       141 l~~~G~~~itvh~R  154 (311)
                      ++++|+++|.+-+.
T Consensus       100 ~~~aGa~aVkiEd~  113 (254)
T cd06557         100 MKEAGADAVKLEGG  113 (254)
T ss_pred             HHHhCCeEEEEcCc
Confidence            55599999998765

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=96.53  E-value=0.19  Score=42.92  Aligned_cols=133  Identities=12%  Similarity=-0.011  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      |.+.+.+.++.+.+.|+++|.++.                    +.+..+.+.+... ++|+.+++..+... ...++..
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~-~~~v~~~v~~~~~~-~~~~~~~   68 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGS-DVPVIVVVGFPTGL-TTTEVKV   68 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCC-CCeEEEEecCCCCC-CcHHHHH
Confidence            889999999999999999999983                    3333333333221 47888887654311 1123578


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEE-e-cCCC-CHHHHHHHH---hh-
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIII-N-GGIK-TKKEIDLHL---NY-  207 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~-n-GgI~-s~~da~~~l---~~-  207 (311)
                      +.++.+.+.|+|++.++.-..  ...++.     ...-.++++++++.+ .++||+. | -+-. +++...++.   .. 
T Consensus        69 ~~a~~a~~~Gad~i~v~~~~~--~~~~~~-----~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~  141 (201)
T cd00945          69 AEVEEAIDLGADEIDVVINIG--SLKEGD-----WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEA  141 (201)
T ss_pred             HHHHHHHHcCCCEEEEeccHH--HHhCCC-----HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999874321  111100     011256777888773 2688763 3 2223 677766652   22 


Q ss_pred             -cCEEEEehhh
Q psy2386         208 -IDGVMLGREA  217 (311)
Q Consensus       208 -adgVmigRa~  217 (311)
                       +|+|=...+.
T Consensus       142 g~~~iK~~~~~  152 (201)
T cd00945         142 GADFIKTSTGF  152 (201)
T ss_pred             CCCEEEeCCCC
Confidence             8888776553

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=96.50  E-value=0.039  Score=50.81  Aligned_cols=91  Identities=13%  Similarity=0.243  Sum_probs=61.5

Q ss_pred             HHHHHHHHhcccc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH
Q psy2386         102 VSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN  179 (311)
Q Consensus       102 ~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~  179 (311)
                      +.+.++.+|+...  .++.|-++.           .+-+..+.++|+|.|-+..                  .+.+.+++
T Consensus       168 i~~~v~~~k~~~p~~~~I~VEv~t-----------leea~~A~~~GaDiI~LDn------------------~~~e~l~~  218 (273)
T PRK05848        168 LKEFIQHARKNIPFTAKIEIECES-----------LEEAKNAMNAGADIVMCDN------------------MSVEEIKE  218 (273)
T ss_pred             HHHHHHHHHHhCCCCceEEEEeCC-----------HHHHHHHHHcCCCEEEECC------------------CCHHHHHH
Confidence            4566666666543  344443321           3446666789999887532                  24455555


Q ss_pred             HHHh----CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         180 LKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       180 i~~~----~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.+.    .|++.+.++||| +++.+.++.+. +|.|.+|.....-|+
T Consensus       219 ~v~~~~~~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~~  265 (273)
T PRK05848        219 VVAYRNANYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIHQATW  265 (273)
T ss_pred             HHHHhhccCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCCc
Confidence            5443    246789999999 99999999987 999999987764444

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=96.48  E-value=0.066  Score=50.87  Aligned_cols=169  Identities=15%  Similarity=0.168  Sum_probs=95.3

Q ss_pred             CCCCeEEEec--C---C----CHH-HHHHHHHHHHHcCCCEEEeccCC-Cc-cccccCcccCcccCChHHHHHHHHHHhc
Q psy2386          44 EEHPIAFQVG--D---N----EPK-KLAKSAKIIQKWGYDEINLNCGC-PS-NRVQNGFFGAILMTKPLLVSDCIKAMRD  111 (311)
Q Consensus        44 ~~~p~~~Ql~--g---~----~~~-~~~~aa~~~~~~g~d~IdiN~gC-P~-~~v~~~~~G~~Ll~~~~~~~~iv~~v~~  111 (311)
                      .+.++++.+-  |   +    -++ .....++.+.+.|+|+|-+++-. |- +...+       ....+.+.++.+++++
T Consensus        82 ~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~~~~-------~~~~~~l~rv~~ec~~  154 (340)
T PRK12858         82 PNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDDAIN-------DRKHAFVERVGAECRA  154 (340)
T ss_pred             CCCCeEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcchHHH-------HHHHHHHHHHHHHHHH
Confidence            4566888774  3   1    122 23334677888999988775321 11 10000       0123456777777666


Q ss_pred             cccceeEEEE--e-ccCC--CC-----CcHHHHHHHHHHHHH--cCCCEEEEecCcc--ccccCCCCcCCCCCcCcHHHH
Q psy2386         112 SVEIDITVKH--R-IGID--DI-----NSYDFVRDFVGTVSS--AGCRTFIVHARNA--FLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       112 ~~~~pvsvKi--R-~g~~--~~-----~~~~~~~e~~~~l~~--~G~~~itvh~Rt~--~~~G~~g~~~~~~~~~~~~~i  177 (311)
                       .++|+.+=+  . .+..  +.     ...+.+...++.+.+  .|+|.+-+---..  .-.|+...+.-|....-.+..
T Consensus       155 -~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f  233 (340)
T PRK12858        155 -NDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLF  233 (340)
T ss_pred             -cCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHH
Confidence             389987742  1 1111  11     112346677788884  9999997742110  012332212222221122556


Q ss_pred             HHHHHhCCCCeEE-EecCCCCHHHHHHHHhh-----c--CEEEEehhhhhCCc
Q psy2386         178 YNLKKDFPELEII-INGGIKTKKEIDLHLNY-----I--DGVMLGREAYKNPF  222 (311)
Q Consensus       178 ~~i~~~~~~ipvi-~nGgI~s~~da~~~l~~-----a--dgVmigRa~l~~P~  222 (311)
                      +++.+.. .+|++ .+||+ |.++..+.++.     +  .||.+||....++-
T Consensus       234 ~~~~~a~-~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v  284 (340)
T PRK12858        234 REQSDAT-DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGI  284 (340)
T ss_pred             HHHHhhC-CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhh
Confidence            7777776 68865 47887 77888877752     7  89999999977664

>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2

Probab=96.47  E-value=0.074  Score=50.47  Aligned_cols=140  Identities=14%  Similarity=0.078  Sum_probs=98.2

Q ss_pred             CCCeEEEe-cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386          45 EHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql-~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi  121 (311)
                      ..|+-... +..+++.+.+.++.+.+.||..+-+..|.. +.   .     --.+++.-.+.++++|+.++  +.+.+-.
T Consensus       108 ~i~~y~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kikvg~~-~~---~-----~~~~~~~d~~~v~avr~~~g~~~~l~vDa  178 (341)
T cd03327         108 KIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYG-PS---D-----GHAGLRKNVELVRAIREAVGYDVDLMLDC  178 (341)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-CC---c-----chHHHHHHHHHHHHHHHHhCCCCcEEEEC
Confidence            34554443 346888888777777788999999976531 00   0     01234666788888888873  4555555


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++...+++.+++.++.++-               + ..++-|++..+++++.. ++||.+.=.+.+..++
T Consensus       179 n~~~~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pIa~gE~~~~~~~~  237 (341)
T cd03327         179 YMSWNL----NYAIKMARALEKYELRWIE---------------E-PLIPDDIEGYAELKKAT-GIPISTGEHEYTVYGF  237 (341)
T ss_pred             CCCCCH----HHHHHHHHHhhhcCCcccc---------------C-CCCccCHHHHHHHHhcC-CCCeEeccCccCHHHH
Confidence            545553    3567899999998877661               1 12335788899999987 7999887789999999


Q ss_pred             HHHHhh--cCEEEEe
Q psy2386         202 DLHLNY--IDGVMLG  214 (311)
Q Consensus       202 ~~~l~~--adgVmig  214 (311)
                      .++++.  +|.|++-
T Consensus       238 ~~~i~~~a~d~i~~d  252 (341)
T cd03327         238 KRLLEGRAVDILQPD  252 (341)
T ss_pred             HHHHHcCCCCEEecC
Confidence            999975  9988865

Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=96.46  E-value=0.038  Score=51.80  Aligned_cols=85  Identities=12%  Similarity=0.031  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-...-..+.-.++++.+++.+  ++||.+-+-..     +.+
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~-----~t~   90 (309)
T cd00952          26 VDLDETARLVERLIAAGVDGILTM----------GTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTL-----NTR   90 (309)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------cccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccC-----CHH
Confidence            477889988998889999999998          2345555555666677777776665  47887755421     123


Q ss_pred             HHHHHHHHHHHcCCCEEEEecC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      +.+++++.+++.|+|++.+..-
T Consensus        91 ~ai~~a~~A~~~Gad~vlv~~P  112 (309)
T cd00952          91 DTIARTRALLDLGADGTMLGRP  112 (309)
T ss_pred             HHHHHHHHHHHhCCCEEEECCC
Confidence            5789999999999999988643

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase

Probab=96.45  E-value=0.087  Score=49.65  Aligned_cols=132  Identities=12%  Similarity=0.125  Sum_probs=89.0

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +..|+-..++..+|+++.+.++...+.||..+-+-.| |             -.|    .+.++++++.+  | .+++++
T Consensus       120 ~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~KiKv~-~-------------~~d----~~~v~~vr~~~--~-~~~l~v  178 (324)
T TIGR01928       120 DKAPAGAVSGLANDEQMLKQIESLKATGYKRIKLKIT-P-------------QIM----HQLVKLRRLRF--P-QIPLVI  178 (324)
T ss_pred             CeEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEEeC-C-------------chh----HHHHHHHHHhC--C-CCcEEE
Confidence            3445555566678888888888777889999988643 1             012    35677777765  3 345554


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      .....-+.+. ...++.+++.++.++-               + ..++-|++-.+++++.. ++||.+.=.+.++.++.+
T Consensus       179 DaN~~~~~~~-a~~~~~l~~~~~~~iE---------------e-P~~~~~~~~~~~l~~~~-~~pia~dEs~~~~~~~~~  240 (324)
T TIGR01928       179 DANESYDLQD-FPRLKELDRYQLLYIE---------------E-PFKIDDLSMLDELAKGT-ITPICLDESITSLDDARN  240 (324)
T ss_pred             ECCCCCCHHH-HHHHHHHhhCCCcEEE---------------C-CCChhHHHHHHHHHhhc-CCCEeeCCCcCCHHHHHH
Confidence            3222111223 3567888888877772               1 11223788899999987 799999888999999999


Q ss_pred             HHhh--cCEEEEe
Q psy2386         204 HLNY--IDGVMLG  214 (311)
Q Consensus       204 ~l~~--adgVmig  214 (311)
                      +++.  +|.+++-
T Consensus       241 ~~~~~~~dvi~~d  253 (324)
T TIGR01928       241 LIELGNVKVINIK  253 (324)
T ss_pred             HHHcCCCCEEEeC
Confidence            9975  8888764

This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.

>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway

Probab=96.43  E-value=0.15  Score=48.66  Aligned_cols=148  Identities=11%  Similarity=0.117  Sum_probs=95.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKi  121 (311)
                      ..|+-..+...+++++.+.++...+.| |..+-+-.|-               .+++.-.+.++++++.++  +.+.+-.
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~~~~~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~l~iDa  195 (365)
T cd03318         131 SLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRASVRVDV  195 (365)
T ss_pred             ceEEEEEEeCCCHHHHHHHHHHHHhCCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCcEEEEEC
Confidence            345544555556666655555555678 9999886541               134444566778887764  3344444


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+.+|-               + ..++-+++..+++++.. .+||.+.=.+.+++|+
T Consensus       196 N~~~~~----~~A~~~~~~l~~~~~~~iE---------------e-P~~~~~~~~~~~l~~~~-~~pia~dE~~~~~~~~  254 (365)
T cd03318         196 NQAWDE----STAIRALPRLEAAGVELIE---------------Q-PVPRENLDGLARLRSRN-RVPIMADESVSGPADA  254 (365)
T ss_pred             CCCCCH----HHHHHHHHHHHhcCcceee---------------C-CCCcccHHHHHHHHhhc-CCCEEcCcccCCHHHH
Confidence            444543    3567899999999877661               1 11224788889999987 7999887788999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      .++++.  +|.+++=-.-.+...=+.++.
T Consensus       255 ~~~i~~~~~d~~~~d~~~~GGit~~~~~~  283 (365)
T cd03318         255 FELARRGAADVFSLKIAKSGGLRRAQKVA  283 (365)
T ss_pred             HHHHHhCCCCeEEEeecccCCHHHHHHHH
Confidence            999975  899887433333333333333

This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.

>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids

Probab=96.42  E-value=0.12  Score=49.29  Aligned_cols=137  Identities=12%  Similarity=0.156  Sum_probs=89.8

Q ss_pred             CCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ..|+-..+...++ +++.+.++.+.+.||..+-+..+ |                 +.-.+.++++|+.++   .+++++
T Consensus       125 ~v~~~~s~~~~~~~~~~~~~~~~~~~~Gf~~~KiKv~-~-----------------~~d~~~l~~vr~~~g---~~~l~l  183 (354)
T cd03317         125 SIPVGVSIGIQDDVEQLLKQIERYLEEGYKRIKLKIK-P-----------------GWDVEPLKAVRERFP---DIPLMA  183 (354)
T ss_pred             eEEeeEEEeCCCcHHHHHHHHHHHHHcCCcEEEEecC-h-----------------HHHHHHHHHHHHHCC---CCeEEE
Confidence            3455555544444 77887777777889999988753 1                 122355777777753   455554


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      .....-+.++. .+++.+++.++.+|-               + ..++-|++-.+++++.. .+||.+.=.+.|++|+.+
T Consensus       184 DaN~~~~~~~a-~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dEs~~~~~~~~~  245 (354)
T cd03317         184 DANSAYTLADI-PLLKRLDEYGLLMIE---------------Q-PLAADDLIDHAELQKLL-KTPICLDESIQSAEDARK  245 (354)
T ss_pred             ECCCCCCHHHH-HHHHHhhcCCccEEE---------------C-CCChhHHHHHHHHHhhc-CCCEEeCCccCCHHHHHH
Confidence            32221112233 468888888877762               1 12234788888999987 699988888999999999


Q ss_pred             HHhh--cCEEEEehhhhhC
Q psy2386         204 HLNY--IDGVMLGREAYKN  220 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~  220 (311)
                      +++.  +|.+.+-=.-.+.
T Consensus       246 ~~~~~~~d~~~ik~~~~GG  264 (354)
T cd03317         246 AIELGACKIINIKPGRVGG  264 (354)
T ss_pred             HHHcCCCCEEEecccccCC
Confidence            9975  8998885433333

NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>TIGR02317 prpB methylisocitrate lyase

Probab=96.41  E-value=0.064  Score=49.67  Aligned_cols=87  Identities=14%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      .|++++++||+.|=+--.+=+ ... +---..++ ..+.+.+.++.|.+++++||+|-+-.|+-+..   +....++.++
T Consensus        25 SAri~e~aGf~Ai~~sg~~~a-~~l-G~pD~g~l-t~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~---~v~~tv~~~~   98 (285)
T TIGR02317        25 AALLAERAGFEAIYLSGAAVA-ASL-GLPDLGIT-TLDEVAEDARRITRVTDLPLLVDADTGFGEAF---NVARTVREME   98 (285)
T ss_pred             HHHHHHHcCCCEEEEcHHHHH-HhC-CCCCCCCC-CHHHHHHHHHHHHhccCCCEEEECCCCCCCHH---HHHHHHHHHH
Confidence            467888999999988632211 111 00011133 55666777788888899999999999987632   4678899999


Q ss_pred             HcCCCEEEEecCc
Q psy2386         143 SAGCRTFIVHARN  155 (311)
Q Consensus       143 ~~G~~~itvh~Rt  155 (311)
                      ++|+.+|++-..+
T Consensus        99 ~aG~agi~IEDq~  111 (285)
T TIGR02317        99 DAGAAAVHIEDQV  111 (285)
T ss_pred             HcCCeEEEEecCC
Confidence            9999999997543

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway

Probab=96.39  E-value=0.1  Score=47.52  Aligned_cols=138  Identities=13%  Similarity=0.159  Sum_probs=90.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR  122 (311)
                      ..|+..-+.+.+++.. +.++...+.||..+-+-+|               -.+++.-.+.++++++.++  ..+.+-..
T Consensus        72 ~v~~~~~~~~~~~~~~-~~~~~~~~~Gf~~~KiKvg---------------~~~~~~d~~~v~~vr~~~g~~~~l~vDaN  135 (263)
T cd03320          72 RIPVNALLPAGDAAAL-GEAKAAYGGGYRTVKLKVG---------------ATSFEEDLARLRALREALPADAKLRLDAN  135 (263)
T ss_pred             CcceeEEecCCCHHHH-HHHHHHHhCCCCEEEEEEC---------------CCChHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence            3456666777777444 4455555679999988654               1234555567778887763  33444444


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++...+++.+++.++.+|-               + ..++-|++..++++  . .+||.+.=.+.+..|+.
T Consensus       136 ~~w~~----~~A~~~~~~l~~~~i~~iE---------------q-P~~~~d~~~~~~l~--~-~~PIa~dEs~~~~~~~~  192 (263)
T cd03320         136 GGWSL----EEALAFLEALAAGRIEYIE---------------Q-PLPPDDLAELRRLA--A-GVPIALDESLRRLDDPL  192 (263)
T ss_pred             CCCCH----HHHHHHHHhhcccCCceEE---------------C-CCChHHHHHHHHhh--c-CCCeeeCCccccccCHH
Confidence            44543    3567889999998887772               1 11234677777776  4 69999988899999999


Q ss_pred             HHHhh--cCEEEEehhhhhCC
Q psy2386         203 LHLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P  221 (311)
                      ++++.  +|.|++==.-.+..
T Consensus       193 ~~~~~~~~d~v~~k~~~~GGi  213 (263)
T cd03320         193 ALAAAGALGALVLKPALLGGP  213 (263)
T ss_pred             HHHhcCCCCEEEECchhcCCH
Confidence            99975  88887753333333

Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=96.39  E-value=0.22  Score=46.16  Aligned_cols=114  Identities=9%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-ccCCCCC----c--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGIDDIN----S--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK  168 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~~~~~----~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~  168 (311)
                      .+|-+...++++..+. .+++|-.-+- +|-.++.    .  +-+..+..+.+++.|+|.+.+.=.|. -+-|.+     
T Consensus       114 eeNi~~Trevv~~Ah~-~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~-HG~Y~~-----  186 (285)
T PRK07709        114 EENVETTKKVVEYAHA-RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV-HGPYKG-----  186 (285)
T ss_pred             HHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeeccc-ccCcCC-----
Confidence            4566777777777665 3666655442 2211110    0  11234445555788999998754442 111222     


Q ss_pred             CCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         169 IPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                      .+..||+.+++|++.+ ++|++.-|+=..+ +++++++.. +.-|=|++.+
T Consensus       187 ~p~L~~~~L~~I~~~~-~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l  236 (285)
T PRK07709        187 EPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN  236 (285)
T ss_pred             CCccCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence            2458999999999998 8999999987776 566777765 7777777765

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=96.37  E-value=0.093  Score=48.64  Aligned_cols=155  Identities=12%  Similarity=0.122  Sum_probs=83.2

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCC-------ccccccCcccCcccC-----Ch---HHHHHHHHHH
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCP-------SNRVQNGFFGAILMT-----KP---LLVSDCIKAM  109 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP-------~~~v~~~~~G~~Ll~-----~~---~~~~~iv~~v  109 (311)
                      .|+++- .|.+  .-.+..+.+.+.| +.+|.+-.=-|       .+...+..  .++++     ++   ..+.++.+ .
T Consensus        11 nP~~~a-ag~~--~~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~--~~~~n~~g~~~~g~~~~~~~~~~-~   84 (296)
T cd04740          11 NPVILA-SGTF--GFGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETP--GGMLNAIGLQNPGVEAFLEELLP-W   84 (296)
T ss_pred             CCCEEC-CCCC--CCHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecC--cceeeecCCCCcCHHHHHHHHHH-H
Confidence            566654 3332  1223334445556 89998864332       22221111  22222     22   33334333 4


Q ss_pred             hccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         110 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       110 ~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      ++..+.|+.|-++-. +    .+++.+.++.++++|+|+|.+|--.....+. |..-...+..-.+.++++++.+ ++||
T Consensus        85 ~~~~~~p~ivsi~g~-~----~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~-g~~~~~~~~~~~eiv~~vr~~~-~~Pv  157 (296)
T cd04740          85 LREFGTPVIASIAGS-T----VEEFVEVAEKLADAGADAIELNISCPNVKGG-GMAFGTDPEAVAEIVKAVKKAT-DVPV  157 (296)
T ss_pred             hhcCCCcEEEEEecC-C----HHHHHHHHHHHHHcCCCEEEEECCCCCCCCC-cccccCCHHHHHHHHHHHHhcc-CCCE
Confidence            444578988877632 2    3357889999999999999998432211110 1100011112346788888877 7898


Q ss_pred             E--EecCCCCHHHHHHHHhh--cCEEEE
Q psy2386         190 I--INGGIKTKKEIDLHLNY--IDGVML  213 (311)
Q Consensus       190 i--~nGgI~s~~da~~~l~~--adgVmi  213 (311)
                      +  .+.++.+..++.+.++.  +|+|.+
T Consensus       158 ~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         158 IVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             EEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            7  44555555555554443  998865

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=96.37  E-value=0.021  Score=56.23  Aligned_cols=156  Identities=16%  Similarity=0.252  Sum_probs=96.6

Q ss_pred             CCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEeccCC----------Cc-------cccccCcccCcccC-----
Q psy2386          44 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGC----------PS-------NRVQNGFFGAILMT-----   97 (311)
Q Consensus        44 ~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN~gC----------P~-------~~v~~~~~G~~Ll~-----   97 (311)
                      ..+-.|.|+.    |-+++       .+  ..++.|+|=+|=          |-       .+.|..-.|..+..     
T Consensus       212 ~~~s~I~QvaSGRFGV~~~-------yL--~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHH  282 (485)
T COG0069         212 DGRSAIKQVASGRFGVTPE-------YL--ANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHH  282 (485)
T ss_pred             cccceEEEeccccCccCHH-------Hh--CccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcc
Confidence            3456888885    44555       22  235888887652          22       22233444554443     


Q ss_pred             ---ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCC-CCCc
Q psy2386          98 ---KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNR-KIPI  171 (311)
Q Consensus        98 ---~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~-~~~~  171 (311)
                         .++-+.+.|..+++.. ..+|+||+-.+..        ++.+.. +.++++|.|+|.|-.. =.|-+|..-. +.+ 
T Consensus       283 DiysieDLaqlI~dLk~~~~~~~I~VKlva~~~--------v~~iaagvakA~AD~I~IdG~~G-GTGAsP~~~~~~~G-  352 (485)
T COG0069         283 DIYSIEDLAQLIKDLKEANPWAKISVKLVAEHG--------VGTIAAGVAKAGADVITIDGADG-GTGASPLTSIDHAG-  352 (485)
T ss_pred             cccCHHHHHHHHHHHHhcCCCCeEEEEEecccc--------hHHHHhhhhhccCCEEEEcCCCC-cCCCCcHhHhhcCC-
Confidence               4678889999999975 4679999876422        223333 7899999999986542 1122221111 111 


Q ss_pred             CcHHH-HHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         172 LKYNF-VYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       172 ~~~~~-i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      .-|+. +.+..+.     + ..+-|++.|++.|..|+...+.. ||.|-+|++++
T Consensus       353 iP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~l  407 (485)
T COG0069         353 IPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAAL  407 (485)
T ss_pred             chHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHHH
Confidence            22443 2222221     1 14789999999999999998876 99999999975

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=96.32  E-value=0.09  Score=47.15  Aligned_cols=138  Identities=15%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             EEe--cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          50 FQV--GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        50 ~Ql--~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+  .+++|..+.   +.+.++|+|.|-+|...+                .+.+.+.+++.++.. +.-+.|-+-..++
T Consensus        60 ~Kl~Di~~t~~~~i---~~~~~~gad~itvH~~ag----------------~~~i~~~~~~~~~~~~~~~~~V~~lts~~  120 (230)
T PRK00230         60 LKLHDIPNTVAKAV---RALAKLGVDMVNVHASGG----------------PRMMKAAREALEPKSRPLLIAVTVLTSMD  120 (230)
T ss_pred             eehhhccccHHHHH---HHHHHcCCCEEEEcccCC----------------HHHHHHHHHHhhccCCCeEEEEEECCCCC
Confidence            445  577777654   445689999999995432                344445555444321 1223332222222


Q ss_pred             CCC--------c-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         127 DIN--------S-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~--------~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      ..+        + .+....+++...+.|++.+.+.+.                     .+..+++..++-.+...+||+ 
T Consensus       121 ~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~---------------------~~~~ir~~~~~~~~~v~pGI~-  178 (230)
T PRK00230        121 EEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ---------------------EAAAIREATGPDFLLVTPGIR-  178 (230)
T ss_pred             HHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH---------------------HHHHHHhhcCCceEEEcCCcC-
Confidence            100        0 113345667777889988866422                     134445444333456778886 


Q ss_pred             HH-----------HHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         198 KK-----------EIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       198 ~~-----------da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++           ...+.++. +|+|++||+.+..+.-...++
T Consensus       179 ~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~  221 (230)
T PRK00230        179 PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYE  221 (230)
T ss_pred             CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHH
Confidence            33           35555555 999999999987766554443

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.31  E-value=0.014  Score=57.58  Aligned_cols=68  Identities=21%  Similarity=0.447  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|++.|.|..-.    |.+        ..-++.|+++++.+|++||++ |+|.|+++++.+++. ||+|-
T Consensus       225 ~~~r~~~L~~aG~d~I~vd~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~  291 (450)
T TIGR01302       225 DKERAEALVKAGVDVIVIDSSH----GHS--------IYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR  291 (450)
T ss_pred             HHHHHHHHHHhCCCEEEEECCC----CcH--------hHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence            4577889999999999985432    111        124678999999888899988 999999999999987 99997


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       292 vg  293 (450)
T TIGR01302       292 VG  293 (450)
T ss_pred             EC
Confidence            65

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.28  E-value=0.19  Score=44.48  Aligned_cols=124  Identities=16%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~  134 (311)
                      ++....++|+.+.+.|+..+++|                   .+    +.++.+++.+++|+..-.+.++++.+- ....
T Consensus        25 ~~~~i~~~a~~~~~~G~~~~~~~-------------------~~----~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~   81 (219)
T cd04729          25 SPEIMAAMALAAVQGGAVGIRAN-------------------GV----EDIRAIRARVDLPIIGLIKRDYPDSEVYITPT   81 (219)
T ss_pred             cHHHHHHHHHHHHHCCCeEEEcC-------------------CH----HHHHHHHHhCCCCEEEEEecCCCCCCceeCCC
Confidence            56778889999999999888741                   12    344556666789986545555432110 0012


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|++.|.+........         ......++++++++.. ++|++.  ++.|++++....+. +|.+.+
T Consensus        82 ~~~~~~a~~aGad~I~~~~~~~~~p---------~~~~~~~~i~~~~~~g-~~~iiv--~v~t~~ea~~a~~~G~d~i~~  149 (219)
T cd04729          82 IEEVDALAAAGADIIALDATDRPRP---------DGETLAELIKRIHEEY-NCLLMA--DISTLEEALNAAKLGFDIIGT  149 (219)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCC---------CCcCHHHHHHHHHHHh-CCeEEE--ECCCHHHHHHHHHcCCCEEEc
Confidence            4577889999999888754321000         0012457788888876 688776  68899999888776 998866


Q ss_pred             e
Q psy2386         214 G  214 (311)
Q Consensus       214 g  214 (311)
                      .
T Consensus       150 ~  150 (219)
T cd04729         150 T  150 (219)
T ss_pred             c
Confidence            3

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=96.28  E-value=0.07  Score=48.23  Aligned_cols=142  Identities=12%  Similarity=0.039  Sum_probs=93.0

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      .|++++++|||.|=+--+..+   ...|+=....-..+.+...+++|++.+. .||++-+-.|+...  .++..+.++++
T Consensus        24 sA~i~e~aG~dai~v~~s~~a---~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~--~~~~~~~~~~l   98 (240)
T cd06556          24 MAKQFADAGLNVMLVGDSQGM---TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGA--PTAAFELAKTF   98 (240)
T ss_pred             HHHHHHHcCCCEEEEChHHHH---HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcC--HHHHHHHHHHH
Confidence            467888899999988532211   1112222223456778888888888875 79999999987753  23567889999


Q ss_pred             HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC---------------CHHHHHHHH-
Q psy2386         142 SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK---------------TKKEIDLHL-  205 (311)
Q Consensus       142 ~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~---------------s~~da~~~l-  205 (311)
                      .++|+++|.+-+-..                ..+.++.++++  .+||++==|..               +.+++.+.+ 
T Consensus        99 ~~aGa~gv~iED~~~----------------~~~~i~ai~~a--~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~  160 (240)
T cd06556          99 MRAGAAGVKIEGGEW----------------HIETLQMLTAA--AVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIA  160 (240)
T ss_pred             HHcCCcEEEEcCcHH----------------HHHHHHHHHHc--CCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHH
Confidence            999999999976421                22456777665  48888776652               233444444 


Q ss_pred             ------hh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         206 ------NY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       206 ------~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                            +. ||+|.+= +.  ++...+++.+.
T Consensus       161 Ra~ay~~AGAd~i~~e-~~--~~e~~~~i~~~  189 (240)
T cd06556         161 DALAYAPAGADLIVME-CV--PVELAKQITEA  189 (240)
T ss_pred             HHHHHHHcCCCEEEEc-CC--CHHHHHHHHHh
Confidence                  22 9999985 33  55566666554

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=96.25  E-value=0.087  Score=49.02  Aligned_cols=155  Identities=13%  Similarity=0.087  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCCEEEeccCCCccc--cccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNR--VQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~--v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .|++++++||+.|=+--.+-+..  -..+. |   +-..+.+.+.++.|.+++++||+|-+-.|+-+..   +....++.
T Consensus        28 SArl~e~aGf~ai~~sg~~~~as~lG~pD~-g---~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~---~v~r~V~~  100 (294)
T TIGR02319        28 SAKVIQQAGFPAVHMTGSGTSASMLGLPDL-G---FTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAM---SVWRATRE  100 (294)
T ss_pred             HHHHHHHcCCCEEEecHHHHHHHHcCCCCc-C---CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHHHH
Confidence            57888999999997631111100  00111 1   2234566677788888899999999999986643   35677999


Q ss_pred             HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCc-HHHHHHHH---HhCC--CCeEEEecCCCC---HHHHHHHH----h
Q psy2386         141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILK-YNFVYNLK---KDFP--ELEIIINGGIKT---KKEIDLHL----N  206 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~-~~~i~~i~---~~~~--~ipvi~nGgI~s---~~da~~~l----~  206 (311)
                      ++++|+.+|++-..+. ...|+.+..    +..+ -+++.+|+   +...  ++-|++==|...   .+++.+-.    +
T Consensus       101 ~~~aGaagi~IEDq~~pK~cg~~~~k----~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~e  176 (294)
T TIGR02319       101 FERVGIVGYHLEDQVNPKRCGHLEGK----RLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVA  176 (294)
T ss_pred             HHHcCCeEEEEECCCCccccCCCCCc----cccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHH
Confidence            9999999999965431 112221110    0111 13444443   3222  233444334433   44443322    2


Q ss_pred             h-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         207 Y-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      . ||+|.+- + +.++.-.+++.+.
T Consensus       177 AGAD~ifi~-~-~~~~~ei~~~~~~  199 (294)
T TIGR02319       177 AGADCIFLE-A-MLDVEEMKRVRDE  199 (294)
T ss_pred             hCCCEEEec-C-CCCHHHHHHHHHh
Confidence            2 9999994 2 4666656666554

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.24  E-value=0.015  Score=57.68  Aligned_cols=69  Identities=10%  Similarity=0.125  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..+.++.|.++|++.|.+..-.    |.+        ..-.+.++++++.+|++|||+ |.+.|.+.++++.+. ||+|
T Consensus       225 ~~~~ra~~Lv~aGVd~i~~D~a~----g~~--------~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i  291 (475)
T TIGR01303       225 DVGGKAKALLDAGVDVLVIDTAH----GHQ--------VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANII  291 (475)
T ss_pred             cHHHHHHHHHHhCCCEEEEeCCC----CCc--------HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEE
Confidence            35688999999999999984322    111        023578999999888999999 889999999999986 9998


Q ss_pred             EEe
Q psy2386         212 MLG  214 (311)
Q Consensus       212 mig  214 (311)
                      -||
T Consensus       292 ~vg  294 (475)
T TIGR01303       292 KVG  294 (475)
T ss_pred             EEC
Confidence            765

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.23  E-value=0.082  Score=49.15  Aligned_cols=155  Identities=13%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             HHHHHHHcCCCEEEeccC-CC-ccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCG-CP-SNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~g-CP-~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .|++++++||+.|=+--. +- ...-..+.   . +-..+.+.+.++.|.+++++||+|-+-.|+-+.   .+....++.
T Consensus        29 SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~---g-~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~---~~v~r~V~~  101 (292)
T PRK11320         29 HALLAERAGFKAIYLSGGGVAAASLGLPDL---G-ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGA---FNIARTVKS  101 (292)
T ss_pred             HHHHHHHcCCCEEEeCHHHHHhHhcCCCCC---C-CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCH---HHHHHHHHH
Confidence            468889999999977522 21 10001111   1 234566677888888889999999999998642   256788999


Q ss_pred             HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcHHHHHHHH---HhCC--CCeEEEecCCCC---HHHHHHHH----hh
Q psy2386         141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLK---KDFP--ELEIIINGGIKT---KKEIDLHL----NY  207 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~--~ipvi~nGgI~s---~~da~~~l----~~  207 (311)
                      ++++|+.+|++-.... ...|+.+..  ..-+. -+++.+|+   +...  ++-|++==|...   .+++.+-.    +.
T Consensus       102 ~~~aGaagi~IEDq~~pK~cg~~~~~--~lv~~-ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eA  178 (292)
T PRK11320        102 MIKAGAAAVHIEDQVGAKRCGHRPNK--EIVSQ-EEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEA  178 (292)
T ss_pred             HHHcCCeEEEEecCCCccccCCCCCC--cccCH-HHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHc
Confidence            9999999999965431 111221110  01111 13444444   3221  334444445443   44443322    22


Q ss_pred             -cCEEEEehhhhhCCcchHHhHh
Q psy2386         208 -IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       208 -adgVmigRa~l~~P~i~~~~~~  229 (311)
                       ||+|.+--  ..++.-++++.+
T Consensus       179 GAD~ifi~~--~~~~~~i~~~~~  199 (292)
T PRK11320        179 GADMIFPEA--MTELEMYRRFAD  199 (292)
T ss_pred             CCCEEEecC--CCCHHHHHHHHH
Confidence             99999942  445555555544

>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate

Probab=96.22  E-value=0.099  Score=50.71  Aligned_cols=121  Identities=8%  Similarity=0.121  Sum_probs=85.4

Q ss_pred             CHHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +|+++.+.++.+. +.||..+-|..|-               .+++.-.+.++++|+.+ ++.+.|...-+|+.    ++
T Consensus       168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avRea~~~~~l~vDaN~~w~~----~~  228 (395)
T cd03323         168 TPEGVVRLARAAIDRYGFKSFKLKGGV---------------LPGEEEIEAVKALAEAFPGARLRLDPNGAWSL----ET  228 (395)
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEEecCC---------------CCHHHHHHHHHHHHHhCCCCcEEEeCCCCcCH----HH
Confidence            6888877776655 4699999986431               23455567788888876 23344444434443    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..++++.+++ ++.++               |+. .  .|++..+++++.. ++||.+.=-+.+.+++.++++.  +|.+
T Consensus       229 A~~~~~~l~~-~l~~i---------------EeP-~--~d~~~~~~L~~~~-~~PIa~dEs~~~~~~~~~~i~~~avdil  288 (395)
T cd03323         229 AIRLAKELEG-VLAYL---------------EDP-C--GGREGMAEFRRAT-GLPLATNMIVTDFRQLGHAIQLNAVDIP  288 (395)
T ss_pred             HHHHHHhcCc-CCCEE---------------ECC-C--CCHHHHHHHHHhc-CCCEEcCCcccCHHHHHHHHHcCCCcEE
Confidence            7888999988 77766               111 1  2788899999988 7999887788999999999975  8888


Q ss_pred             EEeh
Q psy2386         212 MLGR  215 (311)
Q Consensus       212 migR  215 (311)
                      ++-=
T Consensus       289 ~~d~  292 (395)
T cd03323         289 LADH  292 (395)
T ss_pred             eecc
Confidence            7653

GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.

>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional

Probab=96.22  E-value=0.13  Score=49.94  Aligned_cols=142  Identities=11%  Similarity=0.092  Sum_probs=95.6

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc---cccCcccCc-------------cc---CChHHHHHHHHHHhcc
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR---VQNGFFGAI-------------LM---TKPLLVSDCIKAMRDS  112 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~---v~~~~~G~~-------------Ll---~~~~~~~~iv~~v~~~  112 (311)
                      ..+.+++.+.+-|+.+.+.||..+-|..|-|..+   ....+.|..             ..   +.++...+.++++|+.
T Consensus       123 ~~~~~~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~  202 (404)
T PRK15072        123 ANGRDIDELLDDVARHLELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK  202 (404)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence            4566888876666666678999999987743210   000000000             00   1124456889999998


Q ss_pred             cc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         113 VE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       113 ~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      ++  +.+.+-..-+|+.    ++...+++.+++.++.+|-               + ..++-+++..+++++.. .+||.
T Consensus       203 ~G~~~~l~vDaN~~w~~----~~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~L~~~~-~iPIa  261 (404)
T PRK15072        203 FGFDLHLLHDVHHRLTP----IEAARLGKSLEPYRLFWLE---------------D-PTPAENQEAFRLIRQHT-TTPLA  261 (404)
T ss_pred             hCCCceEEEECCCCCCH----HHHHHHHHhccccCCcEEE---------------C-CCCccCHHHHHHHHhcC-CCCEE
Confidence            73  4555655555653    3578889999998887772               1 12234788899999987 79998


Q ss_pred             EecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386         191 INGGIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~--adgVmig  214 (311)
                      +.=.+.++.++.++++.  +|.|++-
T Consensus       262 ~dEs~~~~~~~~~li~~~a~dii~~d  287 (404)
T PRK15072        262 VGEVFNSIWDCKQLIEEQLIDYIRTT  287 (404)
T ss_pred             eCcCccCHHHHHHHHHcCCCCEEecC
Confidence            87789999999999976  8998863

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=96.21  E-value=0.071  Score=49.75  Aligned_cols=125  Identities=13%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-......+.=.++++.+++.++  +||.+-+-.  ..   .+
T Consensus        22 vD~~a~~~lv~~li~~Gv~gi~~~----------GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~--~~---t~   86 (299)
T COG0329          22 VDEEALRRLVEFLIAAGVDGLVVL----------GTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS--NS---TA   86 (299)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------CCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC--Cc---HH
Confidence            478889999999999999999887          23344445566666778888888773  677664332  22   23


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLH  204 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~  204 (311)
                      +.+++++.+++.|+|++.+.+-.-  ...+       ...-+++.+.+.+++ ++|+| +|     |--.+++.+.++
T Consensus        87 eai~lak~a~~~Gad~il~v~PyY--~k~~-------~~gl~~hf~~ia~a~-~lPvilYN~P~~tg~~l~~e~i~~l  154 (299)
T COG0329          87 EAIELAKHAEKLGADGILVVPPYY--NKPS-------QEGLYAHFKAIAEAV-DLPVILYNIPSRTGVDLSPETIARL  154 (299)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCC--cCCC-------hHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHH
Confidence            678999999999999998875431  1100       011345566666665 56643 44     333444444444

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.20  E-value=0.038  Score=51.98  Aligned_cols=67  Identities=16%  Similarity=0.206  Sum_probs=52.1

Q ss_pred             HHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         135 RDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       135 ~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      .+.++.|.++|  +|.|+|..-    +|+|-        .-.+.|+.+++..| -+.+..|.|-|+++++++++. ||+|
T Consensus       109 ~er~~~L~~a~~~~d~iviD~A----hGhs~--------~~i~~ik~ir~~~p-~~~viaGNV~T~e~a~~Li~aGAD~i  175 (343)
T TIGR01305       109 LEKMTSILEAVPQLKFICLDVA----NGYSE--------HFVEFVKLVREAFP-EHTIMAGNVVTGEMVEELILSGADIV  175 (343)
T ss_pred             HHHHHHHHhcCCCCCEEEEECC----CCcHH--------HHHHHHHHHHhhCC-CCeEEEecccCHHHHHHHHHcCCCEE
Confidence            57788888885  999998532    23221        13578999999886 467788999999999999987 9999


Q ss_pred             EEe
Q psy2386         212 MLG  214 (311)
Q Consensus       212 mig  214 (311)
                      -||
T Consensus       176 kVg  178 (343)
T TIGR01305       176 KVG  178 (343)
T ss_pred             EEc
Confidence            887

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=96.19  E-value=0.028  Score=50.87  Aligned_cols=75  Identities=8%  Similarity=0.128  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|+++|.|..-..+++|            +++.+.++++.+ ++||+..+.|.++.++.+.... ||+|
T Consensus        62 d~~~~A~~y~~~GA~aISVlTe~~~F~G------------s~~~l~~v~~~v-~~PvL~KDFIid~~QI~ea~~~GADav  128 (247)
T PRK13957         62 HPVQIAKTYETLGASAISVLTDQSYFGG------------SLEDLKSVSSEL-KIPVLRKDFILDEIQIREARAFGASAI  128 (247)
T ss_pred             CHHHHHHHHHHCCCcEEEEEcCCCcCCC------------CHHHHHHHHHhc-CCCEEeccccCCHHHHHHHHHcCCCEE
Confidence            3578999999999999988754333333            789999999998 8999999999999999998876 9999


Q ss_pred             EEehhhhhC
Q psy2386         212 MLGREAYKN  220 (311)
Q Consensus       212 migRa~l~~  220 (311)
                      .+=-+++.+
T Consensus       129 LLI~~~L~~  137 (247)
T PRK13957        129 LLIVRILTP  137 (247)
T ss_pred             EeEHhhCCH
Confidence            887666653

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.18  E-value=0.094  Score=45.41  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEeccCCCCCcH-HHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRIGIDDINSY-DFVRD  136 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~g~~~~~~~-~~~~e  136 (311)
                      |++.|+-++.-|+.+|-+|           +        +    +=++++|+.+++||.  +|-.  +++.+-+ -.+.+
T Consensus         1 m~~mA~Aa~~gGA~giR~~-----------~--------~----~dI~aik~~v~lPIIGi~K~~--y~~~~V~ITPT~~   55 (192)
T PF04131_consen    1 MARMAKAAEEGGAVGIRAN-----------G--------V----EDIRAIKKAVDLPIIGIIKRD--YPDSDVYITPTLK   55 (192)
T ss_dssp             HHHHHHHHHHCT-SEEEEE-----------S--------H----HHHHHHHTTB-S-EEEE-B-S--BTTSS--BS-SHH
T ss_pred             CHHHHHHHHHCCceEEEcC-----------C--------H----HHHHHHHHhcCCCEEEEEecc--CCCCCeEECCCHH
Confidence            3455666667889999988           1        2    335678999999985  3422  2221110 02356


Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      -++.+.++|++.|.+.+..+           ..|..-.++++++++..    ...-.||.|.+|+....+. +|.|.-
T Consensus        56 ev~~l~~aGadIIAlDaT~R-----------~Rp~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G~D~I~T  118 (192)
T PF04131_consen   56 EVDALAEAGADIIALDATDR-----------PRPETLEELIREIKEKY----QLVMADISTLEEAINAAELGFDIIGT  118 (192)
T ss_dssp             HHHHHHHCT-SEEEEE-SSS-----------S-SS-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT-SEEE-
T ss_pred             HHHHHHHcCCCEEEEecCCC-----------CCCcCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcCCCEEEc
Confidence            68889999999999986543           11123457899999864    6677899999999999876 996643

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.17  E-value=0.032  Score=52.64  Aligned_cols=100  Identities=22%  Similarity=0.327  Sum_probs=64.9

Q ss_pred             cccC-ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCC--CEEEEecCccccccCCCCcCCCCC
Q psy2386          94 ILMT-KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGC--RTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        94 ~Ll~-~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~--~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      .+.+ +++.....++.++.   ..+.|-+.+|...+     ..+-+..+.++|+  |.|.+..-..    .+        
T Consensus        65 ~~~k~~~e~~~~~~r~~~~---~~l~v~~~vg~~~~-----~~~~~~~Lv~ag~~~d~i~iD~a~g----h~--------  124 (326)
T PRK05458         65 IMHRFDPEARIPFIKDMHE---QGLIASISVGVKDD-----EYDFVDQLAAEGLTPEYITIDIAHG----HS--------  124 (326)
T ss_pred             EEecCCHHHHHHHHHhccc---cccEEEEEecCCHH-----HHHHHHHHHhcCCCCCEEEEECCCC----ch--------
Confidence            3445 67665555544332   23355555554332     2467888889965  9999932221    00        


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      ..-.+.|+++++.+|++| +..|+|.|++++..+.+. ||++.+|
T Consensus       125 ~~~~e~I~~ir~~~p~~~-vi~g~V~t~e~a~~l~~aGad~i~vg  168 (326)
T PRK05458        125 DSVINMIQHIKKHLPETF-VIAGNVGTPEAVRELENAGADATKVG  168 (326)
T ss_pred             HHHHHHHHHHHhhCCCCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence            013577999999886655 556778899999999987 9999987

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=96.14  E-value=0.32  Score=45.12  Aligned_cols=115  Identities=11%  Similarity=0.196  Sum_probs=71.5

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC----C-cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI----N-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR  167 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~----~-~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~  167 (311)
                      +.+|-+...++++-.+. .+++|-.-+- +| ..+.    . .+-+..+..+.+++.|+|.|.|.=.|. -+-|.+    
T Consensus       113 ~eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~-HG~Y~~----  186 (286)
T PRK08610        113 FEENVATTKKVVEYAHE-KGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV-HGPYKG----  186 (286)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc-ccccCC----
Confidence            34566777777776654 4666654432 22 1111    0 011234444555789999998754442 111211    


Q ss_pred             CCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         168 KIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                       .|..||+.+++|++.+ ++|++.-||=..+ +++++++.. +.-|=|++.+
T Consensus       187 -~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l  236 (286)
T PRK08610        187 -EPKLGFKEMEEIGLST-GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTEN  236 (286)
T ss_pred             -CCCCCHHHHHHHHHHH-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHH
Confidence             2457999999999998 8999999988776 556677765 7777777665

>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase

Probab=96.14  E-value=0.21  Score=46.67  Aligned_cols=147  Identities=7%  Similarity=0.069  Sum_probs=94.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      ..+....|...+|+.+.+.+..  +.||..+-+..|            .   .+++.-.+.++++++.++-  .+++|+.
T Consensus       100 ~~~~~~~l~~~~~~~~~~~~~~--~~Gf~~~KiKvG------------~---~~~~~d~~~v~~vr~~~g~--~~~l~vD  160 (307)
T TIGR01927       100 SNYYVALLPAGDPALLLLRSAK--AEGFRTFKWKVG------------V---GELAREGMLVNLLLEALPD--KAELRLD  160 (307)
T ss_pred             cccceeeccCCCHHHHHHHHHH--hCCCCEEEEEeC------------C---CChHHHHHHHHHHHHHcCC--CCeEEEe
Confidence            3345566667778877665554  678988887533            1   1455556777888887632  3444543


Q ss_pred             CCCCCcHHHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      ....-+.++..++++.+++   .++.+|               |+.   ...++..+++++.. .+||.+.=.+.+..|+
T Consensus       161 aN~~w~~~~A~~~~~~l~~~~~~~i~~i---------------EqP---~~~~~~~~~l~~~~-~~Pia~dEs~~~~~d~  221 (307)
T TIGR01927       161 ANGGLSPDEAQQFLKALDPNLRGRIAFL---------------EEP---LPDADEMSAFSEAT-GTAIALDESLWELPQL  221 (307)
T ss_pred             CCCCCCHHHHHHHHHhcccccCCCceEE---------------eCC---CCCHHHHHHHHHhC-CCCEEeCCCcCChHHH
Confidence            2222223356788999987   667777               111   11236778888887 7999988899999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+++..  +|.|.+==.-.+.+.-..++.+
T Consensus       222 ~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~  251 (307)
T TIGR01927       222 ADEYGPGWRGALVIKPAIIGSPAKLRDLAQ  251 (307)
T ss_pred             HHHHhcCCCceEEECchhcCCHHHHHHHHH
Confidence            999975  7888775444444444444433

This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=96.14  E-value=0.37  Score=45.52  Aligned_cols=157  Identities=11%  Similarity=0.111  Sum_probs=87.7

Q ss_pred             CCCeEEE--ecCCCHHHHHHHHHHHHHcCCCEEEecc---------CCCccccccC----cccCcc-----cCCh--HHH
Q psy2386          45 EHPIAFQ--VGDNEPKKLAKSAKIIQKWGYDEINLNC---------GCPSNRVQNG----FFGAIL-----MTKP--LLV  102 (311)
Q Consensus        45 ~~p~~~Q--l~g~~~~~~~~aa~~~~~~g~d~IdiN~---------gCP~~~v~~~----~~G~~L-----l~~~--~~~  102 (311)
                      ..|+++-  -++.+.+.+    +.+...|+-+|.+--         |-|.+.....    .-..++     ++++  +..
T Consensus        12 ~nPv~~ASg~~~~~~e~~----~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n~g~~~~   87 (325)
T cd04739          12 KNPLVASASPLSRNLDNI----RRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYNLGPEEY   87 (325)
T ss_pred             CCCCEeCCcCCCCCHHHH----HHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccCcCHHHH
Confidence            3566662  333444444    346678888887753         3333322110    001222     2343  444


Q ss_pred             HHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         103 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       103 ~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      .+-+...++..+.||.+-+- |.+    .+++.++++.++++|+|+|.+|---. ...+..|..   .+..-.+.++.++
T Consensus        88 ~~~i~~~~~~~~~pvi~si~-g~~----~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~---~~~~~~eiv~~v~  159 (325)
T cd04739          88 LELIRRAKRAVSIPVIASLN-GVS----AGGWVDYARQIEEAGADALELNIYALPTDPDISGAE---VEQRYLDILRAVK  159 (325)
T ss_pred             HHHHHHHHhccCCeEEEEeC-CCC----HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccch---HHHHHHHHHHHHH
Confidence            44444445555789888763 222    23578999999999999999874310 001111110   0011247788888


Q ss_pred             HhCCCCeEEE--ecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386         182 KDFPELEIII--NGGIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       182 ~~~~~ipvi~--nGgI~s~~da~~~l~~--adgVmig  214 (311)
                      +.+ ++||+.  ++++.+..++.+.+..  +|+|.+.
T Consensus       160 ~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~  195 (325)
T cd04739         160 SAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLF  195 (325)
T ss_pred             hcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEE
Confidence            887 789874  4566677777666654  9998773

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=96.11  E-value=0.3  Score=43.78  Aligned_cols=132  Identities=11%  Similarity=0.196  Sum_probs=90.3

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      .+.++|...|+..+.+-.+.+++ |+|.+-+-.  |.=+||             ..+=-.+++++++.+++|+.|=+=+ 
T Consensus         4 ~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN-------------~tfg~~~i~~ir~~t~~~~DvHLMv-   68 (229)
T PRK09722          4 KISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPN-------------LTLSPFFVSQVKKLASKPLDVHLMV-   68 (229)
T ss_pred             eEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCC-------------cccCHHHHHHHHhcCCCCeEEEEEe-
Confidence            37789999999999999999988 888755532  322222             1222356778888778887775544 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                       .+      ...+++.+.++|++.|++|.-...  .           --...+..+++.--+.=|..|=+ +..+++..+
T Consensus        69 -~~------P~~~i~~~~~aGad~it~H~Ea~~--~-----------~~~~~i~~Ik~~G~kaGlalnP~-T~~~~l~~~  127 (229)
T PRK09722         69 -TD------PQDYIDQLADAGADFITLHPETIN--G-----------QAFRLIDEIRRAGMKVGLVLNPE-TPVESIKYY  127 (229)
T ss_pred             -cC------HHHHHHHHHHcCCCEEEECccCCc--c-----------hHHHHHHHHHHcCCCEEEEeCCC-CCHHHHHHH
Confidence             22      357889999999999999965310  0           01356777877532334556656 788888888


Q ss_pred             HhhcCEEEEe
Q psy2386         205 LNYIDGVMLG  214 (311)
Q Consensus       205 l~~adgVmig  214 (311)
                      +..+|.|++=
T Consensus       128 l~~vD~VLvM  137 (229)
T PRK09722        128 IHLLDKITVM  137 (229)
T ss_pred             HHhcCEEEEE
Confidence            8889988873

>PLN02334 ribulose-phosphate 3-epimerase

Probab=96.11  E-value=0.4  Score=42.80  Aligned_cols=133  Identities=17%  Similarity=0.214  Sum_probs=82.8

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHH--HHHHHHhccccceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVS--DCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~--~iv~~v~~~~~~pvsvKiR~  123 (311)
                      -.+..++...|+..+.+-.+.+.+.|++.|-+..        +++  . .  .|....  ++++++++.++.|+.|-+-+
T Consensus         8 ~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~--------~d~--~-f--~~~~~~g~~~~~~l~~~~~~~~~vhlmv   74 (229)
T PLN02334          8 AIIAPSILSADFANLAEEAKRVLDAGADWLHVDV--------MDG--H-F--VPNLTIGPPVVKALRKHTDAPLDCHLMV   74 (229)
T ss_pred             ceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEec--------ccC--C-c--CCccccCHHHHHHHHhcCCCcEEEEecc
Confidence            3577888888988899999999999999998841        111  0 1  122222  56667777666665554443


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc-cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC-CCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARN-AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI-KTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt-~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI-~s~~da  201 (311)
                      .  +      ..+++..+.++|++.|++|... .  .           ....+.++++++.  ++-+-..-.- +..+.+
T Consensus        75 ~--~------p~d~~~~~~~~gad~v~vH~~q~~--~-----------d~~~~~~~~i~~~--g~~iGls~~~~t~~~~~  131 (229)
T PLN02334         75 T--N------PEDYVPDFAKAGASIFTFHIEQAS--T-----------IHLHRLIQQIKSA--GMKAGVVLNPGTPVEAV  131 (229)
T ss_pred             C--C------HHHHHHHHHHcCCCEEEEeecccc--c-----------hhHHHHHHHHHHC--CCeEEEEECCCCCHHHH
Confidence            1  1      2356677789999999999772 1  0           0123556666654  3322222222 345666


Q ss_pred             HHHHhh--cCEEEEe
Q psy2386         202 DLHLNY--IDGVMLG  214 (311)
Q Consensus       202 ~~~l~~--adgVmig  214 (311)
                      .+.+..  +|.|++|
T Consensus       132 ~~~~~~~~~Dyi~~~  146 (229)
T PLN02334        132 EPVVEKGLVDMVLVM  146 (229)
T ss_pred             HHHHhccCCCEEEEE
Confidence            677777  9999886

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=96.09  E-value=0.23  Score=45.48  Aligned_cols=138  Identities=17%  Similarity=0.138  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEE-e----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          57 PKKLAKSAKIIQKWGYDEIN-L----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~Id-i----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+.+....+.+++.|...+- +          .. ||.-+     -||..+.+.+++..+    .+ +++||.+|.-..-
T Consensus        75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk-----I~s~~~~n~~LL~~~----a~-~gkPVilk~G~~~  143 (260)
T TIGR01361        75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ-----IGARNMQNFELLKEV----GK-QGKPVLLKRGMGN  143 (260)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE-----ECcccccCHHHHHHH----hc-CCCcEEEeCCCCC
Confidence            56666666777777755432 1          12 55443     578889998875544    33 5899999866532


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCC-----H
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKT-----K  198 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s-----~  198 (311)
                      +    .++....++.+.+.|...|++ |..+..+.++      ....+|+..+..+++.+ ++||+.+ +-...     +
T Consensus       144 t----~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~------~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~  212 (260)
T TIGR01361       144 T----IEEWLYAAEYILSSGNGNVILCERGIRTFEKA------TRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVI  212 (260)
T ss_pred             C----HHHHHHHHHHHHHcCCCcEEEEECCCCCCCCC------CcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHH
Confidence            2    335677888888999976655 5334323221      12237999999999887 7999993 32222     3


Q ss_pred             HHHHHHHhh-cCEEEEehh
Q psy2386         199 KEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa  216 (311)
                      .-+...... |||+||=+=
T Consensus       213 ~~~~aAva~Ga~gl~iE~H  231 (260)
T TIGR01361       213 PLAKAAIAAGADGLMIEVH  231 (260)
T ss_pred             HHHHHHHHcCCCEEEEEeC
Confidence            333344444 999988643

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=96.07  E-value=0.33  Score=44.90  Aligned_cols=116  Identities=13%  Similarity=0.243  Sum_probs=71.9

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++..+. .+++|-.-+- +| ..+.       ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+  
T Consensus       108 ~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~yk~--  183 (282)
T TIGR01858       108 FAQNVKLVKEVVDFCHR-QDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTA-HGLYKK--  183 (282)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCcc-ccCcCC--
Confidence            34566777777777665 3666654432 21 1111       0011233444556789999998754442 111221  


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l  218 (311)
                         .|..||+.+++|++.+ ++|++.-||=..++ +++++.+. +.-|=|++.+.
T Consensus       184 ---~p~Ldf~~L~~I~~~~-~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~  234 (282)
T TIGR01858       184 ---TPKLDFDRLAEIREVV-DVPLVLHGASDVPDEDVRRTIELGICKVNVATELK  234 (282)
T ss_pred             ---CCccCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence               2458999999999998 89999888766554 45566655 77788887763

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>KOG4175|consensus

Probab=96.04  E-value=0.3  Score=42.67  Aligned_cols=44  Identities=16%  Similarity=0.287  Sum_probs=36.9

Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      +++.++++...+.|+-..=||.++|..++.=.-+|||.+|+...
T Consensus       196 ~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsvaDGVvvGSkiv  239 (268)
T KOG4175|consen  196 SLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSVADGVVVGSKIV  239 (268)
T ss_pred             HHHHHHHHhcCCCceeEeeccCCHHHHHhhhhhccceEecHHHH
Confidence            46788888776789888779999999998876699999998763

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=96.04  E-value=0.29  Score=43.33  Aligned_cols=124  Identities=19%  Similarity=0.099  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~  134 (311)
                      ++++..+.|+.+.+.|..++.++                   .    .+.++++++.+++||...++..+.+..- ....
T Consensus        21 ~~~~~~~~a~a~~~~G~~~~~~~-------------------~----~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~   77 (221)
T PRK01130         21 SPEIMAAMALAAVQGGAVGIRAN-------------------G----VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT   77 (221)
T ss_pred             CHHHHHHHHHHHHHCCCeEEEcC-------------------C----HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence            45778888888889999888874                   0    3567777887899986554521000000 0001


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|+|.|++-.....    ++     .+....+++.++++. +.+|++.  ++.|.+++.+..+. +|.+.+
T Consensus        78 ~~~v~~a~~aGad~I~~d~~~~~----~p-----~~~~~~~~i~~~~~~-~~i~vi~--~v~t~ee~~~a~~~G~d~i~~  145 (221)
T PRK01130         78 LKEVDALAAAGADIIALDATLRP----RP-----DGETLAELVKRIKEY-PGQLLMA--DCSTLEEGLAAQKLGFDFIGT  145 (221)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCC----CC-----CCCCHHHHHHHHHhC-CCCeEEE--eCCCHHHHHHHHHcCCCEEEc
Confidence            35688899999998887544210    00     001234667777764 4788875  67899999887766 998877


Q ss_pred             e
Q psy2386         214 G  214 (311)
Q Consensus       214 g  214 (311)
                      +
T Consensus       146 ~  146 (221)
T PRK01130        146 T  146 (221)
T ss_pred             C
Confidence            4

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=96.01  E-value=0.14  Score=46.84  Aligned_cols=73  Identities=12%  Similarity=0.172  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ..|++...+-|+...+.|+|.||||++-+            ....++.+..+|+.+++.+++|+++-..-          
T Consensus        21 ~~d~~~i~~~A~~~~~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT~~----------   78 (261)
T PRK07535         21 AKDAAFIQKLALKQAEAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDSPN----------   78 (261)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeCCC----------
Confidence            45677777777777788999999998732            13457889999999998889999885432          


Q ss_pred             HHHHHHHHHHc--CCCEE
Q psy2386         134 VRDFVGTVSSA--GCRTF  149 (311)
Q Consensus       134 ~~e~~~~l~~~--G~~~i  149 (311)
                       .+.++...++  |++.|
T Consensus        79 -~~v~eaaL~~~~G~~iI   95 (261)
T PRK07535         79 -PAAIEAGLKVAKGPPLI   95 (261)
T ss_pred             -HHHHHHHHHhCCCCCEE
Confidence             2455555655  77765

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.01  E-value=0.21  Score=45.48  Aligned_cols=148  Identities=15%  Similarity=0.200  Sum_probs=88.9

Q ss_pred             CCCeEEEecCCC---HHH----HHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          45 EHPIAFQVGDNE---PKK----LAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~---~~~----~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.|++++|.+++   |+.    +....+-+..+|+|+  +-||.|.....           +..+.+.++++...+ .+.
T Consensus        77 dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~-----------~~i~~~~~v~~~a~~-~Gm  144 (265)
T COG1830          77 DVPLIVKLNGSTSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETER-----------EMIENISQVVEDAHE-LGM  144 (265)
T ss_pred             CcCEEEEeccccccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchH-----------HHHHHHHHHHHHHHH-cCC
Confidence            789999999883   222    222223444678885  55677765431           112333333333333 488


Q ss_pred             eeEEEEe-ccCCC----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         116 DITVKHR-IGIDD----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       116 pvsvKiR-~g~~~----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      |+.+=+- .|...    ....+.+...++...+.|+|.|.+-        |.         -+-+-.+++.+.+| +||+
T Consensus       145 p~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~--------yt---------g~~e~F~~vv~~~~-vpVv  206 (265)
T COG1830         145 PLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTK--------YT---------GDPESFRRVVAACG-VPVV  206 (265)
T ss_pred             ceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeec--------CC---------CChHHHHHHHHhCC-CCEE
Confidence            8766332 23222    1122233344556778999999542        11         13466778888885 9999


Q ss_pred             EecCCCC--HHHHHHHHh----h-cCEEEEehhhhhCCc
Q psy2386         191 INGGIKT--KKEIDLHLN----Y-IDGVMLGREAYKNPF  222 (311)
Q Consensus       191 ~nGgI~s--~~da~~~l~----~-adgVmigRa~l~~P~  222 (311)
                      ..||=.+  .+++.++..    . +.|+.+||=++..|.
T Consensus       207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~  245 (265)
T COG1830         207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHED  245 (265)
T ss_pred             EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCC
Confidence            9998765  555666554    3 999999999877765

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=96.00  E-value=0.11  Score=47.48  Aligned_cols=88  Identities=16%  Similarity=0.041  Sum_probs=54.5

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHH-HHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDF-VGT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~-~~~  140 (311)
                      .|++++++|||.|=.  |-....+. -|+-....-..+.+...+++|++.++.| |.+-+-.|... .+.++..+. .+.
T Consensus        27 sArl~e~aG~d~i~v--Gds~~~~~-lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~-~~~~~av~~a~r~  102 (264)
T PRK00311         27 FAKLFDEAGVDVILV--GDSLGMVV-LGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQ-ASPEQALRNAGRL  102 (264)
T ss_pred             HHHHHHHcCCCEEEE--CHHHHHHH-cCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCcc-CCHHHHHHHHHHH
Confidence            568889999999943  43332222 2333444556777888888888888775 77766433221 222233344 455


Q ss_pred             HHHcCCCEEEEecC
Q psy2386         141 VSSAGCRTFIVHAR  154 (311)
Q Consensus       141 l~~~G~~~itvh~R  154 (311)
                      ++++|+++|.+-+.
T Consensus       103 ~~~aGa~aVkiEdg  116 (264)
T PRK00311        103 MKEAGAHAVKLEGG  116 (264)
T ss_pred             HHHhCCeEEEEcCc
Confidence            55699999998754

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=95.99  E-value=0.053  Score=51.01  Aligned_cols=100  Identities=16%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             cccC-ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCC
Q psy2386          94 ILMT-KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        94 ~Ll~-~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      .+.+ +++.-.+.++.++.. .+  .+-+.+|..++     -.+.+..+.++|  +|.|.+..-    +|+|-       
T Consensus        62 i~hK~~~E~~~sfvrk~k~~-~L--~v~~SvG~t~e-----~~~r~~~lv~a~~~~d~i~~D~a----hg~s~-------  122 (321)
T TIGR01306        62 IMHRFDEESRIPFIKDMQER-GL--FASISVGVKAC-----EYEFVTQLAEEALTPEYITIDIA----HGHSN-------  122 (321)
T ss_pred             EEecCCHHHHHHHHHhcccc-cc--EEEEEcCCCHH-----HHHHHHHHHhcCCCCCEEEEeCc----cCchH-------
Confidence            3445 666545445554332 23  44455555543     257788888888  699987422    22210       


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                       .-++.++++++.+| .|++..|.|.|+++++.+++. ||+|.+|
T Consensus       123 -~~~~~i~~i~~~~p-~~~vi~GnV~t~e~a~~l~~aGad~I~V~  165 (321)
T TIGR01306       123 -SVINMIKHIKTHLP-DSFVIAGNVGTPEAVRELENAGADATKVG  165 (321)
T ss_pred             -HHHHHHHHHHHhCC-CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence             24678999999884 788999999999999999987 9999887

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.99  E-value=0.048  Score=51.33  Aligned_cols=98  Identities=13%  Similarity=0.125  Sum_probs=63.7

Q ss_pred             hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH--cCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386          99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF  176 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~--~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~  176 (311)
                      ++.-.+.++.++.....-++|  .+|..++     -.+.++.|.+  +|+|.|+|..-    +|+|-        .-.+.
T Consensus        81 ~e~~~~fv~~~~~~~~~~~~v--avG~~~~-----d~er~~~L~~~~~g~D~iviD~A----hGhs~--------~~i~~  141 (346)
T PRK05096         81 VEEWAAFVNNSSADVLKHVMV--STGTSDA-----DFEKTKQILALSPALNFICIDVA----NGYSE--------HFVQF  141 (346)
T ss_pred             HHHHHHHHHhccccccceEEE--EecCCHH-----HHHHHHHHHhcCCCCCEEEEECC----CCcHH--------HHHHH
Confidence            444444455555433223333  4444332     2466777777  59999998532    23221        13578


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      |+++++.+|+++ +..|.|-|++.++++++. ||+|=||=|
T Consensus       142 ik~ik~~~P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVGIG  181 (346)
T PRK05096        142 VAKAREAWPDKT-ICAGNVVTGEMVEELILSGADIVKVGIG  181 (346)
T ss_pred             HHHHHHhCCCCc-EEEecccCHHHHHHHHHcCCCEEEEccc
Confidence            999999998877 567999999999999986 999876533

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=95.98  E-value=0.4  Score=44.27  Aligned_cols=116  Identities=10%  Similarity=0.177  Sum_probs=71.8

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR  167 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~  167 (311)
                      +.+|-+...++++-.+.. +++|-.-+- +| -.+.     ..+-+..+....+++.|+|.|.+.=.|. -+.|.+    
T Consensus       105 ~eeNi~~t~~vv~~ah~~-gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~-HG~Y~~----  178 (276)
T cd00947         105 FEENVAKTKEVVELAHAY-GVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTS-HGAYKG----  178 (276)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcc-ccccCC----
Confidence            445677777887776663 555544332 11 1111     0011233444555778999998643332 111111    


Q ss_pred             CCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH-HHHHHhh-cCEEEEehhh
Q psy2386         168 KIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       168 ~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d-a~~~l~~-adgVmigRa~  217 (311)
                      ..+..||+.+++|.+.+ ++|++.-||=..+++ ++++.+. +.-|=+++.+
T Consensus       179 ~~p~L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l  229 (276)
T cd00947         179 GEPKLDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDL  229 (276)
T ss_pred             CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHH
Confidence            12458999999999998 799999998877744 6777765 7778788776

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK02714 O-succinylbenzoate synthase; Provisional

Probab=95.97  E-value=0.27  Score=46.29  Aligned_cols=131  Identities=6%  Similarity=0.126  Sum_probs=86.7

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~  123 (311)
                      .|+.+-|  .+++.+.+.++...+.||..+-+-.|-               .+++.-.+.++++++.+  +..+.+-..-
T Consensus       110 ~~~~~~i--~~~~~~~~~a~~~~~~G~~~~KvKvG~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN~  172 (320)
T PRK02714        110 LSYSALL--PAGEAALQQWQTLWQQGYRTFKWKIGV---------------DPLEQELKIFEQLLERLPAGAKLRLDANG  172 (320)
T ss_pred             Cceeeec--CCCHHHHHHHHHHHHcCCCEEEEEECC---------------CChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence            4444444  334666666666667799888775331               23454556777888776  3445454444


Q ss_pred             cCCCCCcHHHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      +|+.    ++..++++.+++   .++.+|               ++ ..++-|++..+++++.. ++||.+.=.+.++.|
T Consensus       173 ~w~~----~~A~~~~~~l~~l~~~~i~~i---------------Eq-P~~~~~~~~~~~l~~~~-~~Pia~DEs~~~~~d  231 (320)
T PRK02714        173 GLSL----EEAKRWLQLCDRRLSGKIEFI---------------EQ-PLPPDQFDEMLQLSQDY-QTPIALDESVANLAQ  231 (320)
T ss_pred             CCCH----HHHHHHHHHHhhccCCCccEE---------------EC-CCCcccHHHHHHHHHhC-CCCEEECCccCCHHH
Confidence            5543    346778888877   466666               11 11224788889999987 799999889999999


Q ss_pred             HHHHHhh--cCEEEEe
Q psy2386         201 IDLHLNY--IDGVMLG  214 (311)
Q Consensus       201 a~~~l~~--adgVmig  214 (311)
                      +.++++.  +|.|++=
T Consensus       232 ~~~~~~~~a~d~v~ik  247 (320)
T PRK02714        232 LQQCYQQGWRGIFVIK  247 (320)
T ss_pred             HHHHHHcCCCCEEEEc
Confidence            9999975  7777663

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.95  E-value=0.098  Score=50.76  Aligned_cols=68  Identities=19%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.|.++|+|.|++..-.    |.+        ..-++.++++++.+|+++ +..|+|.|+++++.+++. +|+|.
T Consensus       154 ~~~~v~~lv~aGvDvI~iD~a~----g~~--------~~~~~~v~~ik~~~p~~~-vi~g~V~T~e~a~~l~~aGaD~I~  220 (404)
T PRK06843        154 TIERVEELVKAHVDILVIDSAH----GHS--------TRIIELVKKIKTKYPNLD-LIAGNIVTKEAALDLISVGADCLK  220 (404)
T ss_pred             HHHHHHHHHhcCCCEEEEECCC----CCC--------hhHHHHHHHHHhhCCCCc-EEEEecCCHHHHHHHHHcCCCEEE
Confidence            4688999999999999985432    111        124578999999888776 567999999999999986 99999


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       221 vG  222 (404)
T PRK06843        221 VG  222 (404)
T ss_pred             EC
Confidence            87

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=95.95  E-value=0.14  Score=47.15  Aligned_cols=155  Identities=14%  Similarity=0.107  Sum_probs=90.8

Q ss_pred             HHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      .|+++++.||++|=+.- |+-..--..++.    .-..+.+.+.++.|.+++++||+|-+-.|+-+..   +..+.++.+
T Consensus        30 sA~la~~aGF~al~~sg~~vA~slG~pD~~----~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~---nvartV~~~  102 (289)
T COG2513          30 SALLAERAGFKALYLSGAGVAASLGLPDLG----ITTLDEVLADARRITDAVDLPVLVDIDTGFGEAL---NVARTVREL  102 (289)
T ss_pred             HHHHHHHcCCeEEEeccHHHHHhcCCCccc----cccHHHHHHHHHHHHhhcCCceEEeccCCCCcHH---HHHHHHHHH
Confidence            57888999999998861 111111111111    1235677788888888999999999999987732   567889999


Q ss_pred             HHcCCCEEEEecCcc-ccccC-CCCcCCCCCcCcH----HHHHHHHHhCCCCeEEEec--CC---CCHHHHHHHH----h
Q psy2386         142 SSAGCRTFIVHARNA-FLKKL-NPKQNRKIPILKY----NFVYNLKKDFPELEIIING--GI---KTKKEIDLHL----N  206 (311)
Q Consensus       142 ~~~G~~~itvh~Rt~-~~~G~-~g~~~~~~~~~~~----~~i~~i~~~~~~ipvi~nG--gI---~s~~da~~~l----~  206 (311)
                      +++|+.++++..-.. ..-|+ .|+     +..+.    +.|+.+++..++.+++.+.  |.   ...+++.+-.    +
T Consensus       103 ~~aG~agi~iEDq~~pk~cgh~~gk-----~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~e  177 (289)
T COG2513         103 EQAGAAGIHIEDQVGPKRCGHLPGK-----ELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVE  177 (289)
T ss_pred             HHcCcceeeeeecccchhcCCCCCC-----CcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHH
Confidence            999999999863321 01121 111     11222    3455555554444444433  21   1244444332    2


Q ss_pred             h-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         207 Y-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      . ||++-.  ..+.++..++++.+..
T Consensus       178 AGAD~if~--~al~~~e~i~~f~~av  201 (289)
T COG2513         178 AGADAIFP--EALTDLEEIRAFAEAV  201 (289)
T ss_pred             cCCcEEcc--ccCCCHHHHHHHHHhc
Confidence            2 776654  4456666666666543

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.95  E-value=0.04  Score=55.10  Aligned_cols=68  Identities=21%  Similarity=0.437  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+-++.|.++|+|.|.+..-    +|.+        ..-|+.|+++++.+|+++ +..|+|.|+++++.+++. ||+|.
T Consensus       249 ~~~r~~~l~~ag~d~i~iD~~----~g~~--------~~~~~~i~~ik~~~p~~~-vi~g~v~t~e~a~~a~~aGaD~i~  315 (505)
T PLN02274        249 DKERLEHLVKAGVDVVVLDSS----QGDS--------IYQLEMIKYIKKTYPELD-VIGGNVVTMYQAQNLIQAGVDGLR  315 (505)
T ss_pred             HHHHHHHHHHcCCCEEEEeCC----CCCc--------HHHHHHHHHHHHhCCCCc-EEEecCCCHHHHHHHHHcCcCEEE
Confidence            368899999999999998643    2221        125799999999886544 456899999999999987 99998


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       316 vg  317 (505)
T PLN02274        316 VG  317 (505)
T ss_pred             EC
Confidence            75

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=95.93  E-value=0.079  Score=48.24  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=67.8

Q ss_pred             CHHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cC
Q psy2386          56 EPKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GI  125 (311)
Q Consensus        56 ~~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~  125 (311)
                      ++++ +..|.+++++.|+|.|-|--|.                   ...++++++.++ ++||.-=+-+         |+
T Consensus        92 s~e~av~nA~rl~ke~GadaVKlEGg~-------------------~~~~~i~~l~~~-GIPV~gHiGLtPQ~~~~~GGy  151 (261)
T PF02548_consen   92 SPEQAVRNAGRLMKEAGADAVKLEGGA-------------------EIAETIKALVDA-GIPVMGHIGLTPQSVHQLGGY  151 (261)
T ss_dssp             SHHHHHHHHHHHHHTTT-SEEEEEBSG-------------------GGHHHHHHHHHT-T--EEEEEES-GGGHHHHTSS
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeccch-------------------hHHHHHHHHHHC-CCcEEEEecCchhheeccCCc
Confidence            4554 5555566677999999996221                   234556666664 8999875532         11


Q ss_pred             C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         126 D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       126 ~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .    +.++...+.+-++.++++|+-.|.+..-.                  .+..++|.+.+ +||+|+-|.=.     
T Consensus       152 r~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~vp------------------~~la~~It~~l-~IPtIGIGaG~-----  207 (261)
T PF02548_consen  152 RVQGKTAEEAEKLLEDAKALEEAGAFAIVLECVP------------------AELAKAITEAL-SIPTIGIGAGP-----  207 (261)
T ss_dssp             --CSTSHHHHHHHHHHHHHHHHHT-SEEEEESBB------------------HHHHHHHHHHS-SS-EEEESS-S-----
T ss_pred             eEEecCHHHHHHHHHHHHHHHHcCccEEeeecCH------------------HHHHHHHHHhC-CCCEEecCCCC-----
Confidence            1    11223467888999999999999886543                  36778889998 89999877311     


Q ss_pred             HHHHhhcCEEEEe
Q psy2386         202 DLHLNYIDGVMLG  214 (311)
Q Consensus       202 ~~~l~~adgVmig  214 (311)
                           .|||-++=
T Consensus       208 -----~cDGQvLV  215 (261)
T PF02548_consen  208 -----GCDGQVLV  215 (261)
T ss_dssp             -----TSSEEEE-
T ss_pred             -----CCCceEEe
Confidence                 28886653

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>PRK08999 hypothetical protein; Provisional

Probab=95.92  E-value=0.046  Score=50.99  Aligned_cols=72  Identities=11%  Similarity=0.111  Sum_probs=54.5

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +..+.+.|+|++.+.+=..+ .  + ++.  .++..++.++++++.. ++||++-||| |++++.++++. ++||.+-++
T Consensus       239 ~~~a~~~~~dyi~~gpvf~t-~--t-k~~--~~~~g~~~~~~~~~~~-~~Pv~AiGGI-~~~~~~~~~~~g~~gva~i~~  310 (312)
T PRK08999        239 LARAQRLGVDFAVLSPVQPT-A--S-HPG--AAPLGWEGFAALIAGV-PLPVYALGGL-GPGDLEEAREHGAQGIAGIRG  310 (312)
T ss_pred             HHHHHhcCCCEEEECCCcCC-C--C-CCC--CCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHhCCCEEEEEEE
Confidence            45667789999988654321 0  0 111  2346789999999887 8999999999 89999999987 999998776


Q ss_pred             h
Q psy2386         217 A  217 (311)
Q Consensus       217 ~  217 (311)
                      +
T Consensus       311 ~  311 (312)
T PRK08999        311 L  311 (312)
T ss_pred             e
Confidence            5

>PRK14057 epimerase; Provisional

Probab=95.90  E-value=0.52  Score=42.92  Aligned_cols=127  Identities=13%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec--cC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN--CG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN--~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ..++.++|...|+..+.+-.+.+++.|+|.+-+-  =|  +|+-     .+      -|+.    ++++++  +.|+.|=
T Consensus        19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNi-----tf------Gp~~----i~~i~~--~~p~DvH   81 (254)
T PRK14057         19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQF-----TV------GPWA----VGQLPQ--TFIKDVH   81 (254)
T ss_pred             CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCcc-----cc------CHHH----HHHhcc--CCCeeEE
Confidence            4689999999999999999999999999875553  23  3331     12      2444    445554  4666554


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCe-----------
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELE-----------  188 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ip-----------  188 (311)
                      +=+  .+      ...+++.+.++|+|.|++|.-..               .+ ...+..+++.  .++           
T Consensus        82 LMV--~~------P~~~i~~~~~aGad~It~H~Ea~---------------~~~~~~l~~Ir~~--G~k~~~~~~~~kaG  136 (254)
T PRK14057         82 LMV--AD------QWTAAQACVKAGAHCITLQAEGD---------------IHLHHTLSWLGQQ--TVPVIGGEMPVIRG  136 (254)
T ss_pred             eee--CC------HHHHHHHHHHhCCCEEEEeeccc---------------cCHHHHHHHHHHc--CCCcccccccceeE
Confidence            433  22      35788999999999999996631               12 3567777765  232           


Q ss_pred             EEEecCCCCHHHHHHHHhhcCEEEEe
Q psy2386         189 IIINGGIKTKKEIDLHLNYIDGVMLG  214 (311)
Q Consensus       189 vi~nGgI~s~~da~~~l~~adgVmig  214 (311)
                      |..|=+ ++.+.+..++..+|.|++=
T Consensus       137 lAlnP~-Tp~e~i~~~l~~vD~VLvM  161 (254)
T PRK14057        137 ISLCPA-TPLDVIIPILSDVEVIQLL  161 (254)
T ss_pred             EEECCC-CCHHHHHHHHHhCCEEEEE
Confidence            333333 6778888888889988873

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.90  E-value=0.12  Score=48.05  Aligned_cols=70  Identities=16%  Similarity=0.198  Sum_probs=48.8

Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH-HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF-VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~-i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      -+..+.++|+|.|-+..-+               +.++.. +..+++..+++|+.+.||| +.+.+.++.+. +|+|.+|
T Consensus       208 ea~eA~~~GaD~I~LDn~~---------------~e~l~~av~~~~~~~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvg  271 (288)
T PRK07428        208 QVQEALEYGADIIMLDNMP---------------VDLMQQAVQLIRQQNPRVKIEASGNI-TLETIRAVAETGVDYISSS  271 (288)
T ss_pred             HHHHHHHcCCCEEEECCCC---------------HHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEc
Confidence            3455668999999875221               112222 2223332457999999999 59999999876 9999999


Q ss_pred             hhhhhCCc
Q psy2386         215 REAYKNPF  222 (311)
Q Consensus       215 Ra~l~~P~  222 (311)
                      +....-|+
T Consensus       272 sl~~sa~~  279 (288)
T PRK07428        272 APITRSPW  279 (288)
T ss_pred             hhhhCCCc
Confidence            98875555

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.86  E-value=0.17  Score=47.97  Aligned_cols=167  Identities=13%  Similarity=0.173  Sum_probs=90.0

Q ss_pred             CCCCeEEEecCCCH--------HHHHHHHHHHHHcCCCEE--EeccCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386          44 EEHPIAFQVGDNEP--------KKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV  113 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~--------~~~~~aa~~~~~~g~d~I--diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~  113 (311)
                      .+.|++++|.+++.        +.+....+.+.+.|+|+|  -+|.|.+...           +..+.+.+++++..+ .
T Consensus       124 ~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~-----------~ml~~l~~i~~ea~~-~  191 (348)
T PRK09250        124 HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESR-----------RQIEEISEAFEEAHE-L  191 (348)
T ss_pred             CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHH-----------HHHHHHHHHHHHHHH-h
Confidence            36889999988531        223333566777899865  4566643321           123445566666555 4


Q ss_pred             cceeEEEE-eccC--CCCC----cHHHHHHHHHHHHHcCCCEEEEecCcc--ccc--cCCCCcCC-C---CCcCcHHHHH
Q psy2386         114 EIDITVKH-RIGI--DDIN----SYDFVRDFVGTVSSAGCRTFIVHARNA--FLK--KLNPKQNR-K---IPILKYNFVY  178 (311)
Q Consensus       114 ~~pvsvKi-R~g~--~~~~----~~~~~~e~~~~l~~~G~~~itvh~Rt~--~~~--G~~g~~~~-~---~~~~~~~~i~  178 (311)
                      ++|+.+=+ -.|.  .++.    ..+.+...++...+.|+|.|.+---+.  .+.  +|.-++.+ |   .-.-.-+.++
T Consensus       192 GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~  271 (348)
T PRK09250        192 GLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVR  271 (348)
T ss_pred             CCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHH
Confidence            89976522 1132  1111    123344556777799999998642210  000  00000000 0   0001224455


Q ss_pred             HHHHhCC--CCeEEEecCCC-CHHHHHHH-------Hhh-cCEEEEehhhhhCCc
Q psy2386         179 NLKKDFP--ELEIIINGGIK-TKKEIDLH-------LNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       179 ~i~~~~~--~ipvi~nGgI~-s~~da~~~-------l~~-adgVmigRa~l~~P~  222 (311)
                      .+.+.+.  .+||+..||=. +.+++.++       ++. +.||.+||-.+..|.
T Consensus       272 ~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~  326 (348)
T PRK09250        272 YQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPM  326 (348)
T ss_pred             HHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCc
Confidence            5566541  38999888877 44444443       333 899999999877764

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=95.82  E-value=0.22  Score=46.29  Aligned_cols=126  Identities=10%  Similarity=0.139  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=+|          +..|-...-..+.-.++++.+++.+  .+||.+-+  |.   . .+
T Consensus        23 iD~~~l~~li~~l~~~Gv~gi~v~----------GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~---~-t~   86 (296)
T TIGR03249        23 FDEAAYRENIEWLLGYGLEALFAA----------GGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG---N-TS   86 (296)
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEC----------CCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc---c-HH
Confidence            477889999999999999999887          2334444445555566666666554  47777755  32   1 33


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee--cCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN--GGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n--GgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+.+-.  +...+       ...-.++.+++.++. ++||+ .|  |--.+++.+.++.+
T Consensus        87 ~ai~~a~~a~~~Gadav~~~pP~--y~~~s-------~~~i~~~f~~v~~a~-~~pvilYn~~g~~l~~~~~~~La~  153 (296)
T TIGR03249        87 DAIEIARLAEKAGADGYLLLPPY--LINGE-------QEGLYAHVEAVCEST-DLGVIVYQRDNAVLNADTLERLAD  153 (296)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHhcc-CCCEEEEeCCCCCCCHHHHHHHHh
Confidence            67899999999999999886542  11111       012346677777776 68854 54  32346777777664

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=95.81  E-value=0.76  Score=40.41  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             EEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc-CC
Q psy2386          50 FQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-ID  126 (311)
Q Consensus        50 ~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-~~  126 (311)
                      +.++  ++++..+.   +.+.++|+|.|-+|.-++                .+.+.++++.+++. +.++.+-+-+. +.
T Consensus        60 ~k~~di~~~~~~~~---~~~~~~gad~vtvh~e~g----------------~~~l~~~i~~~~~~-g~~~~v~~~~~~~~  119 (215)
T PRK13813         60 LKVADIPNTNRLIC---EAVFEAGAWGIIVHGFTG----------------RDSLKAVVEAAAES-GGKVFVVVEMSHPG  119 (215)
T ss_pred             eeccccHHHHHHHH---HHHHhCCCCEEEEcCcCC----------------HHHHHHHHHHHHhc-CCeEEEEEeCCCCC
Confidence            4553  55555554   445578999999995432                23466777777764 66765543332 11


Q ss_pred             CCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHH
Q psy2386         127 DINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLH  204 (311)
Q Consensus       127 ~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~  204 (311)
                      ..+. .+.+..++....+.|.+...+.. +                 ..+.++++++..+.-..+..|||+.. .++.++
T Consensus       120 ~~~~~~~~~~~v~~m~~e~G~~g~~~~~-~-----------------~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~~  181 (215)
T PRK13813        120 ALEFIQPHADKLAKLAQEAGAFGVVAPA-T-----------------RPERVRYIRSRLGDELKIISPGIGAQGGKAADA  181 (215)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCeEEECC-C-----------------cchhHHHHHHhcCCCcEEEeCCcCCCCCCHHHH
Confidence            1111 12344556666778887664321 1                 23556677665532113377898864 246666


Q ss_pred             Hhh-cCEEEEehhhhhCCcc
Q psy2386         205 LNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P~i  223 (311)
                      ++. +|++.+||+++..+..
T Consensus       182 ~~aGad~iV~Gr~I~~~~d~  201 (215)
T PRK13813        182 IKAGADYVIVGRSIYNAADP  201 (215)
T ss_pred             HHcCCCEEEECcccCCCCCH
Confidence            665 9999999998776653

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=95.80  E-value=0.14  Score=48.94  Aligned_cols=113  Identities=8%  Similarity=0.031  Sum_probs=74.6

Q ss_pred             ccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI  169 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~  169 (311)
                      .+++.+.+|+ ..+-.+.+|+.. +.||.+-+-.......+   ..++.+.++..+++++.+|--.. ..-.+     ..
T Consensus        97 s~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~---~~~~~~~~~~~~adal~l~l~~~-qe~~~-----p~  166 (352)
T PRK05437         97 SQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLYGYG---VEEAQRAVEMIEADALQIHLNPL-QELVQ-----PE  166 (352)
T ss_pred             ccHhhccChh-hHHHHHHHHHHCCCceEEeecCccccCCCC---HHHHHHHHHhcCCCcEEEeCccc-hhhcC-----CC
Confidence            3445577888 677778888876 88988865543221111   24566677778999999985321 01001     01


Q ss_pred             CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +.-+|    +.++++++.+ ++||+.  +|.-.|.++++.+.+. +|+|.++
T Consensus       167 g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs  217 (352)
T PRK05437        167 GDRDFRGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVA  217 (352)
T ss_pred             CcccHHHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence            12245    5788888887 799986  6666889999888776 9999983

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=95.79  E-value=0.17  Score=46.64  Aligned_cols=127  Identities=13%  Similarity=0.069  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+| |         ..|-...-..+.-.++++.+++.+  ++||.+-+..    . +.+
T Consensus        18 iD~~~~~~~i~~l~~~Gv~gl~v~-G---------stGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~----~-~~~   82 (284)
T cd00950          18 VDFDALERLIEFQIENGTDGLVVC-G---------TTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGS----N-NTA   82 (284)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC-C---------CCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCC----c-cHH
Confidence            477889999999999999999998 2         233344444555566677666665  3676654332    1 234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++.+.. ++||+ .     .|-..|++.+.++.+
T Consensus        83 ~~~~~a~~a~~~G~d~v~~~~P~--~~~~~-------~~~l~~~~~~ia~~~-~~pi~lYn~P~~~g~~ls~~~~~~L~~  152 (284)
T cd00950          83 EAIELTKRAEKAGADAALVVTPY--YNKPS-------QEGLYAHFKAIAEAT-DLPVILYNVPGRTGVNIEPETVLRLAE  152 (284)
T ss_pred             HHHHHHHHHHHcCCCEEEEcccc--cCCCC-------HHHHHHHHHHHHhcC-CCCEEEEEChhHhCCCCCHHHHHHHhc
Confidence            67899999999999999886442  11111       011245667777765 67765 2     354556777766654

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=95.79  E-value=0.62  Score=43.85  Aligned_cols=104  Identities=13%  Similarity=0.280  Sum_probs=58.9

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---Cc--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---NS--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK  168 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~  168 (311)
                      .+|-+...++++..+. .+++|-.-+- +| ..+.   +.  +-+..+..+.+++.|+|.+.+.-.|. -+.|.+++...
T Consensus       122 eeNI~~T~evv~~Ah~-~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~-HG~Y~~~~~~~  199 (321)
T PRK07084        122 EENVALTKKVVEYAHQ-FDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTS-HGAYKFKPGQC  199 (321)
T ss_pred             HHHHHHHHHHHHHHHH-cCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccc-cccccCCCCCC
Confidence            4556677777776654 3655544332 11 1111   00  11233444555678999998754442 11121110000


Q ss_pred             CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .+..||+.+++|++.++++|++.-|+=..+++.
T Consensus       200 ~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~  232 (321)
T PRK07084        200 PPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEY  232 (321)
T ss_pred             CCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHH
Confidence            245899999999999856999999987555433

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=95.78  E-value=0.18  Score=46.68  Aligned_cols=126  Identities=14%  Similarity=0.053  Sum_probs=75.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|.          ..|-...-..+.=.++++.+++.+  ++||.+-+-.    . +.+
T Consensus        19 iD~~~l~~~i~~l~~~Gv~gi~~~G----------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~-~~~   83 (292)
T PRK03170         19 VDFAALRKLVDYLIANGTDGLVVVG----------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGS----N-STA   83 (292)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECC----------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCC----c-hHH
Confidence            4778899999999999999999872          233333334444455666555554  3677654332    1 133


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l  205 (311)
                      +.+++++.++++|+|++.+.+-.  +...+.       ..-+++..++.+.+ ++||+ .     .|---|++.+.++.
T Consensus        84 ~~i~~a~~a~~~G~d~v~~~pP~--~~~~~~-------~~i~~~~~~ia~~~-~~pv~lYn~P~~~g~~l~~~~~~~L~  152 (292)
T PRK03170         84 EAIELTKFAEKAGADGALVVTPY--YNKPTQ-------EGLYQHFKAIAEAT-DLPIILYNVPGRTGVDILPETVARLA  152 (292)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCc--CCCCCH-------HHHHHHHHHHHhcC-CCCEEEEECccccCCCCCHHHHHHHH
Confidence            67899999999999999886432  111100       01234555666665 56654 2     24334555555553

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=95.78  E-value=0.17  Score=46.97  Aligned_cols=145  Identities=16%  Similarity=0.121  Sum_probs=81.3

Q ss_pred             HHHHHHHc---------CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          63 SAKIIQKW---------GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        63 aa~~~~~~---------g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      .|++++++         ||++|=+--.+=+ ... +---..++ ..+.+.+.++.|..++++||++.+-.| .+   ...
T Consensus        21 SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a-~s~-G~pD~~~~-~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~---~~~   93 (285)
T TIGR02320        21 SALIAEEARVEVGGESLGFDGIWSSSLTDS-TSR-GVPDIEEA-SWTQRLDVVEFMFDVTTKPIILDGDTG-GN---FEH   93 (285)
T ss_pred             HHHHHHHhhhcccCcCCCcCEEEechHHHH-HHC-CCCCcCcC-CHHHHHHHHHHHHhhcCCCEEEecCCC-CC---HHH
Confidence            46778888         9999887522211 110 00011233 345555668888888899999998888 32   235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCcc-ccccCCCCc--CCCCCcC-cHHHHHHHHHh--CCCCeEEEecCCC----CHHHHHH
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQ--NRKIPIL-KYNFVYNLKKD--FPELEIIINGGIK----TKKEIDL  203 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~--~~~~~~~-~~~~i~~i~~~--~~~ipvi~nGgI~----s~~da~~  203 (311)
                      +.+.++.+.++|+..|.+-..+. ...|+.|..  ....+.. ..+.|+.+++.  -++++|++-=|..    +.+++.+
T Consensus        94 v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~  173 (285)
T TIGR02320        94 FRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALK  173 (285)
T ss_pred             HHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHH
Confidence            67889999999999999954321 011211111  0111111 11233333333  1357777774432    4566554


Q ss_pred             HHh----h-cCEEEEe
Q psy2386         204 HLN----Y-IDGVMLG  214 (311)
Q Consensus       204 ~l~----~-adgVmig  214 (311)
                      ..+    . ||+|++=
T Consensus       174 Ra~ay~eAGAD~ifv~  189 (285)
T TIGR02320       174 RAEAYAEAGADGIMIH  189 (285)
T ss_pred             HHHHHHHcCCCEEEec
Confidence            432    2 9999995

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=95.77  E-value=0.49  Score=43.95  Aligned_cols=115  Identities=15%  Similarity=0.211  Sum_probs=71.5

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++-.+.. +++|-.-+- +| ..+.       ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+  
T Consensus       113 ~eeNi~~T~~vv~~Ah~~-gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~--  188 (288)
T TIGR00167       113 FEENIELTKKVVERAHKM-GVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNV-HGVYKG--  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcc-ccccCC--
Confidence            345667777777765543 665544432 11 1111       0011223444445778999998765442 112221  


Q ss_pred             CCCCCc-CcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         166 NRKIPI-LKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       166 ~~~~~~-~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                         .+. .||+.+++|++.+ ++|++.-||=..+ ++++++... +.-|=|++.+
T Consensus       189 ---~p~~Ld~~~L~~I~~~v-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l  239 (288)
T TIGR00167       189 ---EPKGLDFERLEEIQKYV-NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTEL  239 (288)
T ss_pred             ---CCCccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHH
Confidence               133 7999999999998 8999999988777 466777765 7778788776

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=95.76  E-value=1.5  Score=41.67  Aligned_cols=81  Identities=11%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH---------------
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK---------------  198 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~---------------  198 (311)
                      .+..+.+++.|+|.|.+.=.|.  .| |.+......+..||+.+++|++.++++|++.-|+=..+               
T Consensus       174 eeA~~Fv~~TgvD~LAvaiGt~--HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~  251 (347)
T TIGR01521       174 EEAADFVKKTKVDALAVAIGTS--HGAYKFTRKPTGEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK  251 (347)
T ss_pred             HHHHHHHHHHCcCEEehhcccc--cCCcCCCCCCChhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence            4445556788999998654432  11 11100000123799999999999856999999977665               


Q ss_pred             -------HHHHHHHhh-cCEEEEehhh
Q psy2386         199 -------KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       199 -------~da~~~l~~-adgVmigRa~  217 (311)
                             ++++++++. +.-|=|++.+
T Consensus       252 ~~~g~p~e~i~~ai~~GI~KVNi~Tdl  278 (347)
T TIGR01521       252 ETYGVPVEEIVEGIKYGVRKVNIDTDL  278 (347)
T ss_pred             ccCCCCHHHHHHHHHCCCeeEEeChHH
Confidence                   666666655 6667677665

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=95.73  E-value=1.6  Score=39.97  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=98.7

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++++++.+.++..+.|+.+++.|+|+|-+-  -|...          ..+.+-+.+-.+++.+++++|+.+--
T Consensus        63 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~--pP~y~----------~~~~~~~~~~~~~ia~~~~~pi~iYn  130 (281)
T cd00408          63 VAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV--PPYYN----------KPSQEGIVAHFKAVADASDLPVILYN  130 (281)
T ss_pred             hCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC--CCcCC----------CCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3457899999999999999999999999999999994  34321          13457777888888888899998865


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      ........-   ..+++++|.+.+ +.++....                  .|...+.++.+..++--.+.+|.   -+.
T Consensus       131 ~P~~tg~~l---~~~~~~~L~~~~~v~giK~s~------------------~d~~~~~~~~~~~~~~~~v~~G~---d~~  186 (281)
T cd00408         131 IPGRTGVDL---SPETIARLAEHPNIVGIKDSS------------------GDLDRLTRLIALLGPDFAVLSGD---DDL  186 (281)
T ss_pred             CccccCCCC---CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhcCCCeEEEEcc---hHH
Confidence            443221111   245666666521 22221111                  36677777776653223444565   233


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      +...+.. ++|.+.|-+.+ -|..+.++.+.+.
T Consensus       187 ~~~~l~~G~~G~i~~~~n~-~p~~~~~~~~~~~  218 (281)
T cd00408         187 LLPALALGADGAISGAANV-APKLAVALYEAAR  218 (281)
T ss_pred             HHHHHHcCCCEEEehHHhh-CHHHHHHHHHHHH
Confidence            3444444 99999887654 4777777766554

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=95.72  E-value=0.055  Score=56.83  Aligned_cols=75  Identities=11%  Similarity=0.037  Sum_probs=56.3

Q ss_pred             cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC---CeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE---LEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~---ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +|+|++.+.+-.....     .....++..|+.++++++.+ +   +||++-||| +++++.++++. ++||.+-++++.
T Consensus       127 ~gaDYi~~Gpvf~T~t-----K~~~~~~lG~~~l~~~~~~~-~~~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvisai~~  199 (755)
T PRK09517        127 ALPDVIGIGPVASTAT-----KPDAPPALGVDGIAEIAAVA-QDHGIASVAIGGV-GLRNAAELAATGIDGLCVVSAIMA  199 (755)
T ss_pred             CCCCEEEECCccccCC-----CCCCCCCCCHHHHHHHHHhc-CcCCCCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhC
Confidence            3599999865422100     11122346899999999887 5   999999999 78999999987 999999999987


Q ss_pred             CCcchH
Q psy2386         220 NPFLMS  225 (311)
Q Consensus       220 ~P~i~~  225 (311)
                      .++...
T Consensus       200 a~d~~~  205 (755)
T PRK09517        200 AANPAA  205 (755)
T ss_pred             CCCHHH
Confidence            776443

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=95.71  E-value=0.28  Score=45.41  Aligned_cols=127  Identities=9%  Similarity=0.053  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-++.+.+. |+++|=++          +..|-...-..+.=.++++.+.+.+  .+||.+-+-.    . +.
T Consensus        18 iD~~~~~~~i~~l~~~~Gv~gi~~~----------GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~----~-~~   82 (288)
T cd00954          18 INEDVLRAIVDYLIEKQGVDGLYVN----------GSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGS----L-NL   82 (288)
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEEC----------cCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCC----C-CH
Confidence            4778899999999888 99999887          2233333334444456666665554  3677664332    1 12


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      ++.+++++.+++.|+|++.+.+-..  ...+       ...-+++.+++.+++|++||+ .|     |---+++.+.++.
T Consensus        83 ~~ai~~a~~a~~~Gad~v~~~~P~y--~~~~-------~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg~~l~~~~~~~L~  153 (288)
T cd00954          83 KESQELAKHAEELGYDAISAITPFY--YKFS-------FEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELF  153 (288)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCC--CCCC-------HHHHHHHHHHHHHhcCCCCEEEEeCccccCCCCCHHHHHHHh
Confidence            3678999999999999998764321  1110       001245566666665456654 22     3333555555554

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=95.69  E-value=0.79  Score=40.63  Aligned_cols=93  Identities=13%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI-  128 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-  128 (311)
                      +.|.+.+++++.+.++.+...|+|.||+-+-+=..            .+.+.+.+.+..+++.+++|+.+=+|.-++.+ 
T Consensus         2 v~l~~~~~~~~~~~~~~~~~~~~D~vElRlD~l~~------------~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~   69 (224)
T PF01487_consen    2 VPLTGSTLEELLAELEEAESSGADAVELRLDYLEN------------DSAEDISEQLAELRRSLDLPIIFTVRTKEEGGR   69 (224)
T ss_dssp             EEE--SSHHHHHHHHHHHHHTTTSEEEEEGGGSTT------------TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSS
T ss_pred             EeeCCCCHHHHHHHHHHHHhcCCCEEEEEeccccc------------cChHHHHHHHHHHHHhCCCCEEEEecccccCCC
Confidence            67899999999888888887799999997433211            56788889999999888999999999643221 


Q ss_pred             --CcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386         129 --NSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       129 --~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                        .+.+.-.++.+.+.+.|+++|.|--.
T Consensus        70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~   97 (224)
T PF01487_consen   70 FQGSEEEYLELLERAIRLGPDYIDIELD   97 (224)
T ss_dssp             BSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred             CcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence              12235678899999999999998644

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>cd00423 Pterin_binding Pterin binding enzymes

Probab=95.69  E-value=0.14  Score=46.59  Aligned_cols=80  Identities=14%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .+++...+-|+...+.|+|.||||++...|....-    ......+.+..+++.+++.+++||++-..-           
T Consensus        21 ~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~----~~~~E~~rl~~~v~~l~~~~~~piSIDT~~-----------   85 (258)
T cd00423          21 LSLDKALEHARRMVEEGADIIDIGGESTRPGAEPV----SVEEELERVIPVLRALAGEPDVPISVDTFN-----------   85 (258)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcC----CHHHHHHHHHHHHHHHHhcCCCeEEEeCCc-----------
Confidence            46777777787777889999999988765532100    011234678888889888778998884331           


Q ss_pred             HHHHHHHHHcCCCEE
Q psy2386         135 RDFVGTVSSAGCRTF  149 (311)
Q Consensus       135 ~e~~~~l~~~G~~~i  149 (311)
                      .+.++...+.|++.|
T Consensus        86 ~~v~~aaL~~g~~iI  100 (258)
T cd00423          86 AEVAEAALKAGADII  100 (258)
T ss_pred             HHHHHHHHHhCCCEE
Confidence            366777788887765

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=95.68  E-value=0.08  Score=52.97  Aligned_cols=77  Identities=12%  Similarity=0.065  Sum_probs=56.1

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cC---EEEE
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-ID---GVML  213 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-ad---gVmi  213 (311)
                      +....+.|+|+|.+.+-...   .+ ++.  .++..++.++++++.. ++||++-|||. ++++.++++. ++   ||.+
T Consensus       403 ~~~a~~~gadyi~~gpif~t---~t-k~~--~~~~g~~~~~~~~~~~-~~Pv~aiGGI~-~~~~~~~~~~G~~~~~gvav  474 (502)
T PLN02898        403 AEQAWKDGADYIGCGGVFPT---NT-KAN--NKTIGLDGLREVCEAS-KLPVVAIGGIS-ASNAASVMESGAPNLKGVAV  474 (502)
T ss_pred             HHHHhhcCCCEEEECCeecC---CC-CCC--CCCCCHHHHHHHHHcC-CCCEEEECCCC-HHHHHHHHHcCCCcCceEEE
Confidence            45566789999986432210   00 111  2456899999998876 79999999996 8999999876 76   9999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      +++++..+.
T Consensus       475 ~~~i~~~~d  483 (502)
T PLN02898        475 VSALFDQED  483 (502)
T ss_pred             EeHHhcCCC
Confidence            999975444

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=95.68  E-value=0.1  Score=50.91  Aligned_cols=81  Identities=6%  Similarity=-0.076  Sum_probs=57.6

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--------PELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--------~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      +.++.+.|+|+|.+-+-..+..     +....+|..|+.++++++.+        .++||++-||| +++++.+.++. +
T Consensus       313 l~~A~~~gaDYI~lGPIFpT~T-----K~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl~aGa  386 (437)
T PRK12290        313 LLRIVQIQPSYIALGHIFPTTT-----KQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVWQCGV  386 (437)
T ss_pred             HHHHhhcCCCEEEECCccCCCC-----CCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHHHcCC
Confidence            4556678999998754332100     11123456788887776654        16999999999 78999999987 9


Q ss_pred             CEEEEehhhhhCCcch
Q psy2386         209 DGVMLGREAYKNPFLM  224 (311)
Q Consensus       209 dgVmigRa~l~~P~i~  224 (311)
                      +||.+=|+++..+..-
T Consensus       387 ~GVAVVSAI~~A~DP~  402 (437)
T PRK12290        387 SSLAVVRAITLAEDPQ  402 (437)
T ss_pred             CEEEEehHhhcCCCHH
Confidence            9999999998665543

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.66  E-value=0.42  Score=43.42  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=69.1

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      -||..+++.+++.++    .+ +++||.+|.-..-+    .+++...++.+.+.|...|++--|-  ..+|   +..+..
T Consensus       104 Igs~~~~n~~LL~~v----a~-tgkPVilk~G~~~t----~~e~~~A~e~i~~~Gn~~i~L~eRg--~~~Y---~~~~~n  169 (250)
T PRK13397        104 VGARNMQNFEFLKTL----SH-IDKPILFKRGLMAT----IEEYLGALSYLQDTGKSNIILCERG--VRGY---DVETRN  169 (250)
T ss_pred             ECcccccCHHHHHHH----Hc-cCCeEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEccc--cCCC---CCcccc
Confidence            478889997776554    33 48999999653322    3356777888889999766553321  1222   111222


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEe----cCCCCH--HHHHHHHhh-cCEEEEe
Q psy2386         171 ILKYNFVYNLKKDFPELEIIIN----GGIKTK--KEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~n----GgI~s~--~da~~~l~~-adgVmig  214 (311)
                      ..|+..+..+++.+ ++||+..    +|.+..  .-+...+.. |||+||=
T Consensus       170 ~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE  219 (250)
T PRK13397        170 MLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMME  219 (250)
T ss_pred             ccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEE
Confidence            46888888999877 7998875    454432  233444444 9999986

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=95.63  E-value=1.5  Score=40.63  Aligned_cols=151  Identities=17%  Similarity=0.109  Sum_probs=95.2

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|++++++..+.++..+.++.+++.|+|+|-+-.  |..          .-...+-+.+-.++|.++++.||.+=-
T Consensus        70 ~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~--P~y----------~~~~~~~l~~~f~~va~a~~lPv~iYn  137 (293)
T PRK04147         70 AKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT--PFY----------YPFSFEEICDYYREIIDSADNPMIVYN  137 (293)
T ss_pred             hCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC--CcC----------CCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence            45567999999999999999999999999999998863  321          111346677777888888889988753


Q ss_pred             e---ccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         122 R---IGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       122 R---~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      -   .|.+-      ..+++.+|.+.. +-+|....                  .|+..+.++.+..++..| .+|.  +
T Consensus       138 ~P~~tg~~l------~~~~l~~L~~~pnvvgiK~s~------------------~d~~~~~~~~~~~~~~~v-~~G~--d  190 (293)
T PRK04147        138 IPALTGVNL------SLDQFNELFTLPKVIGVKQTA------------------GDLYQLERIRKAFPDKLI-YNGF--D  190 (293)
T ss_pred             CchhhccCC------CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhCCCCEE-EEee--h
Confidence            2   23221      245666665432 22221110                  266667777766655544 4442  1


Q ss_pred             HHHHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         198 KKEIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       198 ~~da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                       +-+...+. +++|++.|-+.+. |..+.++.+.+..
T Consensus       191 -~~~~~~l~~G~~G~is~~~n~~-p~~~~~l~~~~~~  225 (293)
T PRK04147        191 -EMFASGLLAGADGAIGSTYNVN-GWRARQIFEAAKA  225 (293)
T ss_pred             -HHHHHHHHcCCCEEEechhhhC-HHHHHHHHHHHHC
Confidence             22223333 4999998866553 7777777665543

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=95.63  E-value=0.15  Score=47.34  Aligned_cols=83  Identities=8%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|-          ..|-...-..+.=.++++.+.+.+  ++||.+-+  +. .   ..
T Consensus        18 iD~~~l~~l~~~l~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv--~~-~---t~   81 (289)
T cd00951          18 FDEDAYRAHVEWLLSYGAAALFAAG----------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGA--GY-G---TA   81 (289)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEec--CC-C---HH
Confidence            3678888888888899999998872          233333334444455666555554  57888755  32 1   23


Q ss_pred             HHHHHHHHHHHcCCCEEEEec
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~  153 (311)
                      +.+++++.++++|+|++.+.+
T Consensus        82 ~~i~~a~~a~~~Gad~v~~~p  102 (289)
T cd00951          82 TAIAYAQAAEKAGADGILLLP  102 (289)
T ss_pred             HHHHHHHHHHHhCCCEEEECC
Confidence            578999999999999998753

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=95.60  E-value=0.18  Score=47.80  Aligned_cols=113  Identities=7%  Similarity=0.049  Sum_probs=71.7

Q ss_pred             ccCcccCChHHHHHHHHHHhc-cccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI  169 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~  169 (311)
                      .+++.+.+|+...+. +.+|+ ..++|+.+-+-........   ..++.+.++..+++++.+|--..  +...    ...
T Consensus        90 s~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~~~---~~~~~~~i~~i~adal~i~ln~~--q~~~----~p~  159 (333)
T TIGR02151        90 SQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVEGG---PEEAQEAIDMIEADALAIHLNVL--QELV----QPE  159 (333)
T ss_pred             CchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhcccc---HHHHHHHHHHhcCCCEEEcCccc--cccc----CCC
Confidence            344556789977666 77777 5689998865432111111   23455556666789998885321  1100    001


Q ss_pred             CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +..+|    +.++.+++.+ ++||+.  +|.-.+.++++.+.+. +|+|-++
T Consensus       160 g~~~f~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vs  210 (333)
T TIGR02151       160 GDRNFKGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVA  210 (333)
T ss_pred             CCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            11234    6788999988 799986  5655788888888776 9999995

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=95.60  E-value=0.15  Score=47.61  Aligned_cols=84  Identities=11%  Similarity=0.168  Sum_probs=60.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-...-.++.=.++++.+++.+  ++||.+-+  +.    +.+
T Consensus        25 iD~~~l~~li~~l~~~Gv~Gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~~----~t~   88 (303)
T PRK03620         25 FDEAAYREHLEWLAPYGAAALFAA----------GGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--GG----GTA   88 (303)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------cCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--CC----CHH
Confidence            367889988999999999999988          2234444445555566677666655  47887755  31    123


Q ss_pred             HHHHHHHHHHHcCCCEEEEecC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      +.+++++.+++.|+|++.+.+-
T Consensus        89 ~~i~~~~~a~~~Gadav~~~pP  110 (303)
T PRK03620         89 QAIEYAQAAERAGADGILLLPP  110 (303)
T ss_pred             HHHHHHHHHHHhCCCEEEECCC
Confidence            6789999999999999988643

>PRK15452 putative protease; Provisional

Probab=95.59  E-value=0.56  Score=46.24  Aligned_cols=132  Identities=15%  Similarity=0.127  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ..+++.+.    .+.++|+|.|=+...--.......     .+ +.+.+.+.++-+++. ++.|.+.+..-.. ++..+.
T Consensus        10 ag~~e~l~----aAi~~GADaVY~G~~~~~~R~~~~-----~f-~~edl~eav~~ah~~-g~kvyvt~n~i~~-e~el~~   77 (443)
T PRK15452         10 AGTLKNMR----YAFAYGADAVYAGQPRYSLRVRNN-----EF-NHENLALGINEAHAL-GKKFYVVVNIAPH-NAKLKT   77 (443)
T ss_pred             CCCHHHHH----HHHHCCCCEEEECCCccchhhhcc-----CC-CHHHHHHHHHHHHHc-CCEEEEEecCcCC-HHHHHH
Confidence            34555554    344789999988533222211111     11 235567777766653 6777777664333 233446


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCCCHHHHHHHHhh-cCE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~s~~da~~~l~~-adg  210 (311)
                      +.++++.+.+.|+|+|.|.                    |+..+..+++..|++||.+.-  .|++...+.-+.+. ++.
T Consensus        78 ~~~~l~~l~~~gvDgvIV~--------------------d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~r  137 (443)
T PRK15452         78 FIRDLEPVIAMKPDALIMS--------------------DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTR  137 (443)
T ss_pred             HHHHHHHHHhCCCCEEEEc--------------------CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcE
Confidence            6777888889999999884                    555566666655667776654  45565555555444 666


Q ss_pred             EEEehhh
Q psy2386         211 VMLGREA  217 (311)
Q Consensus       211 VmigRa~  217 (311)
                      |.+.|-+
T Consensus       138 vvLSrEL  144 (443)
T PRK15452        138 VILSREL  144 (443)
T ss_pred             EEECCcC
Confidence            6555543

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=95.59  E-value=0.16  Score=46.31  Aligned_cols=81  Identities=15%  Similarity=0.108  Sum_probs=53.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .+++...+-|+...+.|+|.||||+-...+...    +-.-....+.+..+++.+++.+++||++-..-           
T Consensus        21 ~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~----~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~-----------   85 (257)
T cd00739          21 LSLDKAVAHAEKMIAEGADIIDIGGESTRPGAD----PVSVEEELERVIPVLEALRGELDVLISVDTFR-----------   85 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCC-----------
Confidence            356777777777778899999999644333110    00112344567778899988878998885331           


Q ss_pred             HHHHHHHHHcCCCEEE
Q psy2386         135 RDFVGTVSSAGCRTFI  150 (311)
Q Consensus       135 ~e~~~~l~~~G~~~it  150 (311)
                      .+.++...++|++.|-
T Consensus        86 ~~v~e~al~~G~~iIN  101 (257)
T cd00739          86 AEVARAALEAGADIIN  101 (257)
T ss_pred             HHHHHHHHHhCCCEEE
Confidence            3566777778988773

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=95.59  E-value=0.78  Score=42.54  Aligned_cols=115  Identities=11%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---Cc----HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---NS----YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~~----~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++..+.. +++|-.-+- +| ..++   ..    +-+..+..+.+++.|+|.|.|.=.|. -+.|.   
T Consensus       110 ~eeNi~~T~evv~~Ah~~-gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~Y~---  184 (286)
T PRK12738        110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA-HGLYS---  184 (286)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcc-cCCCC---
Confidence            345677778888776653 666544332 22 1111   00    11234445556788999998754442 11121   


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                        ..|..||+.+++|++.+ ++|++.-||=..+ ++++++.+. ..-|=|++.+
T Consensus       185 --~~p~Ldfd~l~~I~~~~-~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l  235 (286)
T PRK12738        185 --KTPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL  235 (286)
T ss_pred             --CCCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence              12458999999999998 8999988866554 555666655 7778788776

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=95.58  E-value=0.33  Score=45.13  Aligned_cols=127  Identities=15%  Similarity=0.086  Sum_probs=75.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=++-          ..|-...-..+.=.++++.+++.+  ++||.+-+-.  .   +.+
T Consensus        18 iD~~~l~~lv~~~~~~Gv~gi~v~G----------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~--~---~t~   82 (294)
T TIGR02313        18 IDEEALRELIEFQIEGGSHAISVGG----------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGA--L---NHD   82 (294)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCc--c---hHH
Confidence            3678888888988899999998872          233333334444455666555544  4677654332  1   233


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+.+-.  +...+       ...-.++.+.+.++.|++||+ .|     |---+++.+.++.
T Consensus        83 ~ai~~a~~A~~~Gad~v~v~pP~--y~~~~-------~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~~l~~L~  152 (294)
T TIGR02313        83 ETLELTKFAEEAGADAAMVIVPY--YNKPN-------QEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPKTMARLR  152 (294)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCcc--CCCCC-------HHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHHHHHHHH
Confidence            57899999999999999987542  11100       001234555666655456654 22     3334555555554

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]

Probab=95.58  E-value=0.2  Score=45.32  Aligned_cols=98  Identities=15%  Similarity=0.272  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cC--
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GI--  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~--  125 (311)
                      .+.+..|++++++.|+|.|-|-             |+      ..+.++++.+.+. ++||.-=+-+         |+  
T Consensus        93 ~~a~~nA~r~~ke~gA~aVKlE-------------GG------~~~~~~i~~L~~~-gIPV~gHiGLtPQ~v~~~GGykv  152 (268)
T COG0413          93 EQALKNAARLMKEAGADAVKLE-------------GG------EEMAETIKRLTER-GIPVMGHIGLTPQSVNWLGGYKV  152 (268)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEc-------------CC------HHHHHHHHHHHHc-CCceEEEecCChhhhhccCCeee
Confidence            4557777788888999999885             22      4567777777775 8998764432         11  


Q ss_pred             --CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         126 --DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       126 --~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                        ...++.+.+.+=++.++++|+-.+.+.+-.                  -+..++|.+.+ +||.|+-|
T Consensus       153 qGr~~~~a~~l~~dA~ale~AGaf~ivlE~Vp------------------~~lA~~IT~~l-siPtIGIG  203 (268)
T COG0413         153 QGRTEESAEKLLEDAKALEEAGAFALVLECVP------------------AELAKEITEKL-SIPTIGIG  203 (268)
T ss_pred             ecCCHHHHHHHHHHHHHHHhcCceEEEEeccH------------------HHHHHHHHhcC-CCCEEeec
Confidence              111233467778899999999999886542                  25678888888 79999887

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=95.55  E-value=1.4  Score=45.06  Aligned_cols=214  Identities=13%  Similarity=0.146  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      ...-.+.+.+.|.|.|-|=.  +             +++.+.+...++.+++. +..+.+-+........+.+.+.++++
T Consensus        99 v~~~v~~a~~~Gid~~rifd--~-------------lnd~~~~~~ai~~ak~~-G~~~~~~i~yt~~p~~~~~~~~~~a~  162 (593)
T PRK14040         99 VERFVERAVKNGMDVFRVFD--A-------------MNDPRNLETALKAVRKV-GAHAQGTLSYTTSPVHTLQTWVDLAK  162 (593)
T ss_pred             HHHHHHHHHhcCCCEEEEee--e-------------CCcHHHHHHHHHHHHHc-CCeEEEEEEEeeCCccCHHHHHHHHH
Confidence            34445667788999977742  2             35567778888888775 44433333321222334557889999


Q ss_pred             HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC----CCCHHHHHHHHhhcCEEEE--
Q psy2386         140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG----IKTKKEIDLHLNYIDGVML--  213 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg----I~s~~da~~~l~~adgVmi--  213 (311)
                      .++++|++.|.+-.-.+   ...       |..-.+.++++++.+ ++||-.-+-    .....-+..+-.+||.|-.  
T Consensus       163 ~l~~~Gad~i~i~Dt~G---~l~-------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai  231 (593)
T PRK14040        163 QLEDMGVDSLCIKDMAG---LLK-------PYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAI  231 (593)
T ss_pred             HHHHcCCCEEEECCCCC---CcC-------HHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEecc
Confidence            99999999998854321   111       123467889999888 788865442    2222222222223554432  


Q ss_pred             ---ehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--HHH
Q psy2386         214 ---GREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS--NKF  286 (311)
Q Consensus       214 ---gRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~--~~~  286 (311)
                         |.+ .+||.+-.-+. .+...+. ....+. +.+..+.+|+..... |... ......  ...-|.+.+||.  +.+
T Consensus       232 ~glG~~-~Gn~~le~vv~-~L~~~~~-~~gidl-~~l~~is~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~PGG~~Snl  305 (593)
T PRK14040        232 SSMSMT-YGHSATETLVA-TLEGTER-DTGLDI-LKLEEIAAYFREVRKKYAKFEGQLKGV--DSRILVAQVPGGMLTNM  305 (593)
T ss_pred             cccccc-ccchhHHHHHH-HHHhcCC-CcCCCH-HHHHHHHHHHHHHHHHhccCCcccccC--cccEEEEcCCCchHHHH
Confidence               333 47777554332 2222111 122343 456666666665544 3210 011111  112256789999  899


Q ss_pred             HHHHhCCCCCCCChHHHHHHh
Q psy2386         287 KQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       287 r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      +..+.+..... ...++|+++
T Consensus       306 ~~ql~~~g~~~-~~~evl~e~  325 (593)
T PRK14040        306 ESQLKEQGAAD-KLDEVLAEI  325 (593)
T ss_pred             HHHHHHCCCHH-HHHHHHHHH
Confidence            99998888766 677777665

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=95.54  E-value=0.58  Score=43.45  Aligned_cols=140  Identities=15%  Similarity=0.190  Sum_probs=80.1

Q ss_pred             HHHHHHHHcCCCEEEecc-------CCCccccccCcccCcccC-----Ch---HHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          62 KSAKIIQKWGYDEINLNC-------GCPSNRVQNGFFGAILMT-----KP---LLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~-------gCP~~~v~~~~~G~~Ll~-----~~---~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      +.++.+.+.|+.+|.+--       |-|.++..+..  .++++     ++   ..+.++.... +..+.|+.+-+.- .+
T Consensus        27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~--~~~~n~~g~~~~g~~~~~~~~~~~~-~~~~~p~i~si~g-~~  102 (301)
T PRK07259         27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETP--GGMLNAIGLQNPGVDAFIEEELPWL-EEFDTPIIANVAG-ST  102 (301)
T ss_pred             HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecC--CceeecCCCCCcCHHHHHHHHHHHH-hccCCcEEEEecc-CC
Confidence            344556678899988853       34444443322  22332     32   3344444433 3347898887752 22


Q ss_pred             CCCcHHHHHHHHHHHHHcC-CCEEEEecCccc-cc-cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE--ecCCCCHHHH
Q psy2386         127 DINSYDFVRDFVGTVSSAG-CRTFIVHARNAF-LK-KLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEI  201 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~-~~-G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~--nGgI~s~~da  201 (311)
                          .+++.+.++.++++| +|+|.++.--.. .. |+   .-...+..-++.++.+++.+ ++||+.  +.++.+..++
T Consensus       103 ----~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~---~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~  174 (301)
T PRK07259        103 ----EEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGM---AFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEI  174 (301)
T ss_pred             ----HHHHHHHHHHHhccCCcCEEEEECCCCCCCCCcc---ccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHH
Confidence                346789999999999 999988421100 11 11   11111223467788888887 789875  4455555555


Q ss_pred             HHHHhh--cCEEEE
Q psy2386         202 DLHLNY--IDGVML  213 (311)
Q Consensus       202 ~~~l~~--adgVmi  213 (311)
                      .+.++.  +|+|.+
T Consensus       175 a~~l~~~G~d~i~~  188 (301)
T PRK07259        175 AKAAEEAGADGLSL  188 (301)
T ss_pred             HHHHHHcCCCEEEE
Confidence            555544  898865

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.52  E-value=1.9  Score=41.05  Aligned_cols=103  Identities=7%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-cc-CC-------C----------CCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-ID-------D----------INSYDFVRDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~-------~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                      .+|-+...++++.... .+++|-.-+- +| ..       +          ...+-+..+..+.+++.|+|.|.|.=.|.
T Consensus       119 eENI~~Tkevve~Ah~-~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~  197 (347)
T PRK09196        119 EYNVDVTRKVVEMAHA-CGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTS  197 (347)
T ss_pred             HHHHHHHHHHHHHHHH-cCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccc
Confidence            4466677777776644 3666654442 11 11       0          00011244555666889999997543331


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                       -+-|.+......+..||+.+++|++.++++|++.-|+=..++|
T Consensus       198 -HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~  240 (347)
T PRK09196        198 -HGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQE  240 (347)
T ss_pred             -cCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHH
Confidence             0111110000112379999999999985699998887655443

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=95.51  E-value=0.87  Score=40.22  Aligned_cols=179  Identities=9%  Similarity=0.163  Sum_probs=105.3

Q ss_pred             CCCCHHHHHHHHHhCCC--cEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec
Q psy2386           2 NLTDRHCRMFHRQITRY--SWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN   78 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~--~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN   78 (311)
                      |+|...==..+.+.|+.  ++.|-+- |.+.+- ..-.++...-+. .+++.=+...+++++.   +++.+.+.|.|.||
T Consensus         8 Glt~~eda~~a~~~gad~iG~If~~~-SpR~Vs~~~a~~i~~~v~~-~~~VgVf~n~~~~~i~---~i~~~~~ld~VQlH   82 (208)
T COG0135           8 GLTRLEDAKAAAKAGADYIGFIFVPK-SPRYVSPEQAREIASAVPK-VKVVGVFVNESIEEIL---EIAEELGLDAVQLH   82 (208)
T ss_pred             CCCCHHHHHHHHHcCCCEEEEEEcCC-CCCcCCHHHHHHHHHhCCC-CCEEEEECCCCHHHHH---HHHHhcCCCEEEEC
Confidence            44555545556667642  2333332 222221 111223322222 3333333455666665   44557789999999


Q ss_pred             cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386          79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL  158 (311)
Q Consensus        79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~  158 (311)
                                   |   -.+++.+.    .+++..++||.=-++.....+       .........-++.+.+.......
T Consensus        83 -------------G---~e~~~~~~----~l~~~~~~~v~kai~v~~~~~-------~~~~~~~~~~~d~~LlDa~~~~~  135 (208)
T COG0135          83 -------------G---DEDPEYID----QLKEELGVPVIKAISVSEEGD-------LELAAREEGPVDAILLDAKVPGL  135 (208)
T ss_pred             -------------C---CCCHHHHH----HHHhhcCCceEEEEEeCCccc-------hhhhhhccCCccEEEEcCCCCCC
Confidence                         1   14566644    455555778766666643221       11233345558888887665433


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-c-CEEEEehhhhhCCc
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-I-DGVMLGREAYKNPF  222 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-a-dgVmigRa~l~~P~  222 (311)
                      .|-+|.      ..||+.+...  .. ..|++..||++ ++.+.+.++. + .||=+.+|.=.+|-
T Consensus       136 ~GGtG~------~fDW~~l~~~--~~-~~~~~LAGGL~-p~NV~~ai~~~~p~gvDvSSGVE~~pG  191 (208)
T COG0135         136 PGGTGQ------TFDWNLLPKL--RL-SKPVMLAGGLN-PDNVAEAIALGPPYGVDVSSGVESSPG  191 (208)
T ss_pred             CCCCCc------EECHHHhccc--cc-cCCEEEECCCC-HHHHHHHHHhcCCceEEeccccccCCC
Confidence            444443      4799988776  23 57899999996 7899999887 6 99999999977774

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.51  E-value=0.4  Score=44.39  Aligned_cols=115  Identities=14%  Similarity=0.217  Sum_probs=70.2

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC---C--c--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI---N--S--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~---~--~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++..+. .+++|-.-+- +| ..+.   .  .  +-+..+..+.+++.|+|.|.|.=.|. -+.|.+  
T Consensus       110 ~eeNi~~T~~vv~~Ah~-~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~-HG~y~~--  185 (284)
T PRK12857        110 LEENIALTKKVVEIAHA-VGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTA-HGPYKG--  185 (284)
T ss_pred             HHHHHHHHHHHHHHHHH-cCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcc-ccccCC--
Confidence            34566777777777654 3555544332 22 1111   0  0  11233444555788999998754442 111222  


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~  217 (311)
                         .|..||+.+++|++.+ ++|++.-||=..++ +++++.+. +.-|=|++.+
T Consensus       186 ---~p~Ld~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~  235 (284)
T PRK12857        186 ---EPKLDFDRLAKIKELV-NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNI  235 (284)
T ss_pred             ---CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHH
Confidence               2458999999999998 79999888766554 45566655 7777788776

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=95.50  E-value=0.27  Score=45.42  Aligned_cols=127  Identities=15%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-...-..+.=.++++.+.+.+  .+||.+-+-    .. +.+
T Consensus        16 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~----~~-s~~   80 (285)
T TIGR00674        16 VDFAALEKLIDFQIENGTDAIVVV----------GTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTG----SN-ATE   80 (285)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCC----Cc-cHH
Confidence            367888888898888999999886          1223333334444455556555544  367766432    11 234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-E-----ecCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-I-----NGGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~-----nGgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+.+-.  +..++       ...-+++.+++.+.+ ++||+ .     .|---|++.+.++.+
T Consensus        81 ~~i~~a~~a~~~Gad~v~v~pP~--y~~~~-------~~~i~~~~~~i~~~~-~~pi~lYn~P~~tg~~l~~~~l~~L~~  150 (285)
T TIGR00674        81 EAISLTKFAEDVGADGFLVVTPY--YNKPT-------QEGLYQHFKAIAEEV-DLPIILYNVPSRTGVSLYPETVKRLAE  150 (285)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCc--CCCCC-------HHHHHHHHHHHHhcC-CCCEEEEECcHHhcCCCCHHHHHHHHc
Confidence            67899999999999999886543  11111       011245566677666 67765 2     344455666666653

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=95.47  E-value=0.53  Score=44.63  Aligned_cols=150  Identities=15%  Similarity=0.076  Sum_probs=92.4

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhcc
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS  112 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~  112 (311)
                      |-..|...|=.|  .+.+..-.+.+++.|...+-==+.          |+.-     .-||..++|.+++.++-     .
T Consensus       131 pRTsp~sf~G~g--~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~l-----qIgAr~~~N~~LL~~va-----~  198 (335)
T PRK08673        131 PRTSPYSFQGLG--EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDIL-----QIGARNMQNFDLLKEVG-----K  198 (335)
T ss_pred             CCCCCccccccc--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCeE-----EECcccccCHHHHHHHH-----c
Confidence            444555555555  555666666677777654322111          4433     36888999999877654     2


Q ss_pred             ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         113 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       113 ~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      +++||.+|--..-+    .+++...++.+...|...++ +|..+..+.++.      ...+|+..+..+++.. ++||++
T Consensus       199 ~~kPViLk~G~~~t----i~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~------~~~ldl~ai~~lk~~~-~lPVi~  267 (335)
T PRK08673        199 TNKPVLLKRGMSAT----IEEWLMAAEYILAEGNPNVILCERGIRTFETAT------RNTLDLSAVPVIKKLT-HLPVIV  267 (335)
T ss_pred             CCCcEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcC------hhhhhHHHHHHHHHhc-CCCEEE
Confidence            58999999665322    33566777888889987555 453232232221      2236889999999887 799987


Q ss_pred             ec----CCCC--HHHHHHHHhh-cCEEEEeh
Q psy2386         192 NG----GIKT--KKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       192 nG----gI~s--~~da~~~l~~-adgVmigR  215 (311)
                      .-    |.+.  +.-+...... |||+||=+
T Consensus       268 d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~  298 (335)
T PRK08673        268 DPSHATGKRDLVEPLALAAVAAGADGLIVEV  298 (335)
T ss_pred             eCCCCCccccchHHHHHHHHHhCCCEEEEEe
Confidence            53    3322  2334444444 99999973

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.46  E-value=0.06  Score=53.49  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..+.++.|.++|++.|.+..-.+    .+        ..-++.|++|++.+|+++|+ .|+|.|.+.++.+++. ||+|
T Consensus       227 ~~~~~a~~Lv~aGvd~i~~D~a~~----~~--------~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aGad~v  293 (479)
T PRK07807        227 DVAAKARALLEAGVDVLVVDTAHG----HQ--------EKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAGADIV  293 (479)
T ss_pred             hHHHHHHHHHHhCCCEEEEeccCC----cc--------HHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcCCCEE
Confidence            356889999999999998854332    11        12468899999998877665 5899999999999986 9998


Q ss_pred             EEeh
Q psy2386         212 MLGR  215 (311)
Q Consensus       212 migR  215 (311)
                      -+|=
T Consensus       294 ~vgi  297 (479)
T PRK07807        294 KVGV  297 (479)
T ss_pred             EECc
Confidence            7543

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=95.43  E-value=0.37  Score=44.48  Aligned_cols=84  Identities=10%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      |.+.+.+-++.+.+.|+++|=++-          ..|-...-..+.-.++++.+.+.+  ++||.+-+-.  .   +.++
T Consensus        20 d~~~~~~~i~~l~~~Gv~gl~~~G----------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~--~---st~~   84 (289)
T PF00701_consen   20 DEDALKRLIDFLIEAGVDGLVVLG----------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA--N---STEE   84 (289)
T ss_dssp             -HHHHHHHHHHHHHTTSSEEEESS----------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES--S---SHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECC----------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc--h---hHHH
Confidence            678899999988899999999872          223333333444455666665544  5788775443  1   2346


Q ss_pred             HHHHHHHHHHcCCCEEEEecC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~R  154 (311)
                      .+++++.+++.|+|++.+..-
T Consensus        85 ~i~~a~~a~~~Gad~v~v~~P  105 (289)
T PF00701_consen   85 AIELARHAQDAGADAVLVIPP  105 (289)
T ss_dssp             HHHHHHHHHHTT-SEEEEEES
T ss_pred             HHHHHHHHhhcCceEEEEecc
Confidence            899999999999999987643

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=95.43  E-value=0.054  Score=54.00  Aligned_cols=68  Identities=19%  Similarity=0.343  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|++.|++..-.....            --++.++.+++..|++||++ |+|.|.+++..+.+. ||+|-
T Consensus       229 ~~e~a~~L~~agvdvivvD~a~g~~~------------~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~  295 (486)
T PRK05567        229 NEERAEALVEAGVDVLVVDTAHGHSE------------GVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK  295 (486)
T ss_pred             hHHHHHHHHHhCCCEEEEECCCCcch------------hHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence            36889999999999998742211000            13577899998887899888 999999999999986 99998


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       296 vg  297 (486)
T PRK05567        296 VG  297 (486)
T ss_pred             EC
Confidence            75

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=95.41  E-value=0.23  Score=45.60  Aligned_cols=61  Identities=15%  Similarity=0.186  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-+..+.+.|+|+|.+..-                  ..+.++++.+..+ .+|+.+.||| +++.+.++.+. +|++.+
T Consensus       189 eea~~A~~~gaDyI~ld~~------------------~~e~lk~~v~~~~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isv  249 (265)
T TIGR00078       189 EEAEEAAEAGADIIMLDNM------------------KPEEIKEAVQLLKGRVLLEASGGI-TLDNLEEYAETGVDVISS  249 (265)
T ss_pred             HHHHHHHHcCCCEEEECCC------------------CHHHHHHHHHHhcCCCcEEEECCC-CHHHHHHHHHcCCCEEEe
Confidence            3466678999999977432                  2355666665442 3899999999 58999999987 999999


Q ss_pred             eh
Q psy2386         214 GR  215 (311)
Q Consensus       214 gR  215 (311)
                      |.
T Consensus       250 ga  251 (265)
T TIGR00078       250 GA  251 (265)
T ss_pred             CH
Confidence            54

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=95.41  E-value=2  Score=39.63  Aligned_cols=154  Identities=14%  Similarity=0.097  Sum_probs=94.1

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++++++.+.++..+.|+.++++|+|+|-+-.  |.       |   ...+++-+.+-.+++.+++++||.+=-
T Consensus        67 ~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p--P~-------~---~~~~~~~i~~~~~~ia~~~~~pv~lYn  134 (292)
T PRK03170         67 VNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT--PY-------Y---NKPTQEGLYQHFKAIAEATDLPIILYN  134 (292)
T ss_pred             hCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC--Cc-------C---CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence            44567999999999999999999999999999999842  32       1   112456677777888877889988753


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~  199 (311)
                      -.+..... .  ..++++.|.+.+ +-++.-.         +         .|...+.++.+..++ +.| .+|.=   .
T Consensus       135 ~P~~~g~~-l--~~~~~~~L~~~p~v~giK~s---------~---------~d~~~~~~~~~~~~~~~~v-~~G~d---~  189 (292)
T PRK03170        135 VPGRTGVD-I--LPETVARLAEHPNIVGIKEA---------T---------GDLERVSELIELVPDDFAV-YSGDD---A  189 (292)
T ss_pred             CccccCCC-C--CHHHHHHHHcCCCEEEEEEC---------C---------CCHHHHHHHHHhCCCCeEE-EECCh---H
Confidence            32211111 1  146667775432 2222111         0         255666666655433 333 34421   1


Q ss_pred             HHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         200 EIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       200 da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      .+...+. +++|++.|.+.+ -|.++.++.+.+..
T Consensus       190 ~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~~~~~  223 (292)
T PRK03170        190 LALPFLALGGVGVISVAANV-APKEMAEMCDAALA  223 (292)
T ss_pred             hHHHHHHcCCCEEEEhHHhh-hHHHHHHHHHHHHC
Confidence            1223333 499999988763 37777777766543

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=95.39  E-value=2.2  Score=39.38  Aligned_cols=154  Identities=12%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK  120 (311)
                      .....|+++++++.+.++..+.|+.+++.|+|+|-+-  .|...          --+.+-+.+-.+.+.+++ ++||.+=
T Consensus        67 ~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~--~P~y~----------~~~~~~i~~~~~~v~~a~~~lpi~iY  134 (288)
T cd00954          67 AKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI--TPFYY----------KFSFEEIKDYYREIIAAAASLPMIIY  134 (288)
T ss_pred             hCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCC----------CCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            3456799999999999999999999999999999874  34321          124566778888888888 8999884


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTK  198 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~  198 (311)
                      --.+....+ .  ..+++.+|.+.+ +-+|....                  .|+..+.++.+..+ ++.|+...|-   
T Consensus       135 n~P~~tg~~-l--~~~~~~~L~~~pnivgiK~s~------------------~d~~~~~~~~~~~~~~~~v~~G~d~---  190 (288)
T cd00954         135 HIPALTGVN-L--TLEQFLELFEIPNVIGVKFTA------------------TDLYDLERIRAASPEDKLVLNGFDE---  190 (288)
T ss_pred             eCccccCCC-C--CHHHHHHHhcCCCEEEEEeCC------------------CCHHHHHHHHHhCCCCcEEEEechH---
Confidence            222111111 1  245666666532 22221111                  25666667766654 4444433221   


Q ss_pred             HHHHHHH-hhcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         199 KEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       199 ~da~~~l-~~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                       .+...+ .+++|.+.|-+.+ -|..+.++.+.+..
T Consensus       191 -~~~~~~~~G~~G~i~~~~n~-~P~~~~~l~~~~~~  224 (288)
T cd00954         191 -MLLSALALGADGAIGSTYNV-NGKRYRKIFEAFNA  224 (288)
T ss_pred             -HHHHHHHcCCCEEEeChhhh-CHHHHHHHHHHHHc
Confidence             122233 3499998886554 47777777665543

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=95.39  E-value=0.47  Score=44.06  Aligned_cols=118  Identities=15%  Similarity=0.271  Sum_probs=71.4

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC--------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI--------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~--------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      .+|-+...++++-.+. .+++|-.-+- +| .++.        ..+-+..+..+.+++.|+|.|.|.=.|. -+.|.+. 
T Consensus       110 eeNi~~T~~vv~~ah~-~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~-HG~y~~~-  186 (287)
T PF01116_consen  110 EENIAITREVVEYAHA-YGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTA-HGMYKGG-  186 (287)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSB-SSSBSSS-
T ss_pred             HHHHHHHHHHHHhhhh-hCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcc-ccccCCC-
Confidence            4556677777776665 3666655442 12 1110        1111334555666899999998754442 1222221 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l  218 (311)
                        ..|..|++.+++|++.++++|++.-||=..++ ++++++.. +.-|=+++.+.
T Consensus       187 --~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~  239 (287)
T PF01116_consen  187 --KKPKLDFDRLKEIREAVPDIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELR  239 (287)
T ss_dssp             --SSTC--HHHHHHHHHHHHTSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHH
T ss_pred             --CCcccCHHHHHHHHHhcCCCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHH
Confidence              23457999999999997569999999887766 66777765 77788887764

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=95.37  E-value=0.59  Score=43.47  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=90.9

Q ss_pred             HHHHHHHcCCCEEEeccCCCcccc--ccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRV--QNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v--~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .|++++++||++|=+--.+ ....  ..+   ..+ -..+.+.+.++.|.+.+++||+|-+-.|+-+..   +..+.++.
T Consensus        27 SAri~e~aGf~ai~~ss~~-va~slG~pD---~g~-l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~---~v~~tV~~   98 (290)
T TIGR02321        27 VAKLAEQAGFGGIWGSGFE-LSASYAVPD---ANI-LSMSTHLEMMRAIASTVSIPLIADIDTGFGNAV---NVHYVVPQ   98 (290)
T ss_pred             HHHHHHHcCCCEEEECHHH-HHHHCCCCC---ccc-CCHHHHHHHHHHHHhccCCCEEEECCCCCCCcH---HHHHHHHH
Confidence            5788899999998875211 1100  011   112 245667788888888899999999999986643   35677999


Q ss_pred             HHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCcH-HHHHHHH---HhCCCCeEEEe--cCCC----CHHHHHHHH----
Q psy2386         141 VSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILKY-NFVYNLK---KDFPELEIIIN--GGIK----TKKEIDLHL----  205 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~~-~~i~~i~---~~~~~ipvi~n--GgI~----s~~da~~~l----  205 (311)
                      ++++|+..|.+-.... ...|+...  ...+..+. +++.+|+   +...+.+++.|  =|..    ..+++.+-.    
T Consensus        99 ~~~aGvagi~IEDq~~pk~cg~~~~--g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~  176 (290)
T TIGR02321        99 YEAAGASAIVMEDKTFPKDTSLRTD--GRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYE  176 (290)
T ss_pred             HHHcCCeEEEEeCCCCCcccccccC--CCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHH
Confidence            9999999999965321 01121100  00111222 3344444   32212344444  3543    234554333    


Q ss_pred             hh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         206 NY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       206 ~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      +. ||+|++- +...++.-+.++.+.+
T Consensus       177 eAGAD~ifv~-~~~~~~~ei~~~~~~~  202 (290)
T TIGR02321       177 EAGADAILIH-SRQKTPDEILAFVKSW  202 (290)
T ss_pred             HcCCCEEEec-CCCCCHHHHHHHHHhc
Confidence            22 9999993 3346666666666543

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=95.36  E-value=0.95  Score=42.38  Aligned_cols=100  Identities=11%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-----C--cHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCCc
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-----N--SYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQ  165 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-----~--~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~  165 (311)
                      .+|-+...++++-.+. .+++|-.-+- +| ..+.     .  .+-+..+..+.+++.|+|.|.|.=.|.  .| |..+ 
T Consensus       111 eeNi~~T~~vve~Ah~-~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~--HG~Yk~~-  186 (307)
T PRK05835        111 EENLELTSKVVKMAHN-AGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTS--HGAFKFK-  186 (307)
T ss_pred             HHHHHHHHHHHHHHHH-cCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCcc--ccccCCC-
Confidence            4566677777776654 3555544332 21 1111     0  011234445555788999998754442  12 1100 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                        ..|..||+.+++|++.+ ++|++.-|+=..+++..
T Consensus       187 --~~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~  220 (307)
T PRK05835        187 --GEPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVR  220 (307)
T ss_pred             --CCCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHh
Confidence              12458999999999998 89999999888888533

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.35  E-value=0.45  Score=43.69  Aligned_cols=139  Identities=13%  Similarity=0.105  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEE-ec----------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          57 PKKLAKSAKIIQKWGYDEIN-LN----------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~Id-iN----------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+.+....+.+++.|...+- +.          . |+.-+     -||..+++.+++.++     ...++||.+|.-..-
T Consensus        77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k-----Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~~~  145 (266)
T PRK13398         77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQ-----IGSRNMQNFELLKEV-----GKTKKPILLKRGMSA  145 (266)
T ss_pred             HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEE-----ECcccccCHHHHHHH-----hcCCCcEEEeCCCCC
Confidence            67777777888888865432 21          1 44433     688889998876655     236899999966432


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCC-----H
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKT-----K  198 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s-----~  198 (311)
                      +    .+++...++.+.+.|...+++ |.......+|.      ...+|+..+..+++.. ++||+.. .-..+     +
T Consensus       146 s----~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~------~~~vdl~~i~~lk~~~-~~pV~~D~sHs~G~~~~v~  214 (266)
T PRK13398        146 T----LEEWLYAAEYIMSEGNENVVLCERGIRTFETYT------RNTLDLAAVAVIKELS-HLPIIVDPSHATGRRELVI  214 (266)
T ss_pred             C----HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC------HHHHHHHHHHHHHhcc-CCCEEEeCCCcccchhhHH
Confidence            2    335667778888899865554 43221122322      2236888888888887 7999983 43333     4


Q ss_pred             HHHHHHHhh-cCEEEEehhh
Q psy2386         199 KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa~  217 (311)
                      ..+...+.. |||+||=+=.
T Consensus       215 ~~~~aAva~Ga~Gl~iE~H~  234 (266)
T PRK13398        215 PMAKAAIAAGADGLMIEVHP  234 (266)
T ss_pred             HHHHHHHHcCCCEEEEeccC
Confidence            444444444 9999987443

>PRK15063 isocitrate lyase; Provisional

Probab=95.31  E-value=0.65  Score=45.20  Aligned_cols=131  Identities=8%  Similarity=0.006  Sum_probs=86.8

Q ss_pred             CCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeEE
Q psy2386          46 HPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDITV  119 (311)
Q Consensus        46 ~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvsv  119 (311)
                      .|+++=+   +|+.++ ..+.++...++|+.+|.|-=..+.+|.+....|-.|....+.+.+|.. ++.+   .+.|+.+
T Consensus       147 ~PIiADaDtGfGg~~n-v~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~A-Ar~A~d~~g~~~vI  224 (428)
T PRK15063        147 APIVADAEAGFGGVLN-AFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVA-ARLAADVMGVPTLV  224 (428)
T ss_pred             CCeEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHH-HHHHHHhcCCCeEE
Confidence            7999988   355554 788889999999999999766665555543333335544455555544 4432   3678777


Q ss_pred             EEeccCCC----------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386         120 KHRIGIDD----------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI  171 (311)
Q Consensus       120 KiR~g~~~----------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~  171 (311)
                      =-|..-..                            ....++.++-+..+.+ |+|.|-+++.+                
T Consensus       225 iARTDA~aa~li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~----------------  287 (428)
T PRK15063        225 IARTDAEAADLLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETST----------------  287 (428)
T ss_pred             EEECCccccccccccccccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCC----------------
Confidence            67764311                            0235567777888878 99999887553                


Q ss_pred             CcHHHHHHHHHhCCC-Ce--EEEecCC
Q psy2386         172 LKYNFVYNLKKDFPE-LE--IIINGGI  195 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~-ip--vi~nGgI  195 (311)
                      .+.+.++++.+.++. +|  +.++|.-
T Consensus       288 ~d~ee~~~fa~~v~~~~P~~~layn~s  314 (428)
T PRK15063        288 PDLEEARRFAEAIHAKFPGKLLAYNCS  314 (428)
T ss_pred             CCHHHHHHHHHhhcccCccceeecCCC
Confidence            378889998887621 37  7777743

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=95.31  E-value=2.4  Score=39.29  Aligned_cols=116  Identities=12%  Similarity=0.204  Sum_probs=71.0

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++..+.. ++.|-.-+- +| ..++       ..+-+..+..+.+++.|+|.+.|.=.|. -+.|.+  
T Consensus       110 ~eeNi~~T~~vv~~Ah~~-gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~-HG~y~~--  185 (284)
T PRK12737        110 FEENIAIVKEVVEFCHRY-DASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTA-HGLYKG--  185 (284)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcc-ccccCC--
Confidence            345667777777776653 555544332 22 1111       0011234445555779999998754442 111211  


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~l  218 (311)
                         .|..||+.+++|++.+ ++|++.-||=..++ +++++++. +.-|=|++.+-
T Consensus       186 ---~p~Ld~~~L~~I~~~~-~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~  236 (284)
T PRK12737        186 ---EPKLDFERLAEIREKV-SIPLVLHGASGVPDEDVKKAISLGICKVNVATELK  236 (284)
T ss_pred             ---CCcCCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHH
Confidence               2458999999999988 79999888766554 45666665 88888888763

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=95.31  E-value=0.42  Score=44.34  Aligned_cols=84  Identities=11%  Similarity=0.054  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-.+.+.+.| +++|=+|          +..|-...-..+.-.++++.+++.+  .+||.+-+-.  .   +.
T Consensus        18 iD~~~~~~~i~~~i~~G~v~gi~~~----------GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~--~---~t   82 (290)
T TIGR00683        18 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGS--V---NL   82 (290)
T ss_pred             cCHHHHHHHHHHHHhCCCcCEEEEC----------CcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--C---CH
Confidence            37788888888888899 9999887          2234434445555566777666655  4677764432  1   12


Q ss_pred             HHHHHHHHHHHHcCCCEEEEec
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~  153 (311)
                      ++.+++++.+++.|+|++.+..
T Consensus        83 ~~~i~la~~a~~~Gad~v~v~~  104 (290)
T TIGR00683        83 KEAVELGKYATELGYDCLSAVT  104 (290)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeC
Confidence            3578999999999999998854

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=95.30  E-value=0.12  Score=45.74  Aligned_cols=78  Identities=12%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-cccceeEEEEeccCCCCCcHHHHHH
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      +...+-|+...+.|+|.||||++.-.|...    ........+++..+++++++ ..++|+++-..-           .+
T Consensus        19 ~~a~~~a~~~~~~GAdiIDIg~~st~p~~~----~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-----------~~   83 (210)
T PF00809_consen   19 DEAVKRAREQVEAGADIIDIGAESTRPGAT----PVSEEEEMERLVPVLQAIREENPDVPLSIDTFN-----------PE   83 (210)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEESSTSSTTSS----SSHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-----------HH
T ss_pred             HHHHHHHHHHHHhcCCEEEecccccCCCCC----cCCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-----------HH
Confidence            445555666777899999999877444210    11122445677788888876 568999997552           34


Q ss_pred             HHHHHHHcCCCEEE
Q psy2386         137 FVGTVSSAGCRTFI  150 (311)
Q Consensus       137 ~~~~l~~~G~~~it  150 (311)
                      .++...++|++.|.
T Consensus        84 v~~~aL~~g~~~in   97 (210)
T PF00809_consen   84 VAEAALKAGADIIN   97 (210)
T ss_dssp             HHHHHHHHTSSEEE
T ss_pred             HHHHHHHcCcceEE
Confidence            55666666888763

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=95.25  E-value=2.5  Score=39.15  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             cccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCC
Q psy2386          94 ILMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK  164 (311)
Q Consensus        94 ~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~  164 (311)
                      .+.+|-+...++++-.+. .+++|-.-+- +| ..+.       ..+-+..+..+.+++.|+|.+.|.=.|. -+.|.+ 
T Consensus       109 ~~eeNi~~T~~vv~~Ah~-~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~-  185 (284)
T PRK09195        109 PFAQNISLVKEVVDFCHR-FDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTA-HGMYKG-  185 (284)
T ss_pred             CHHHHHHHHHHHHHHHHH-cCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcc-ccccCC-
Confidence            345567777777777665 3665544332 22 1111       0011233444555788999998754442 111211 


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhhh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~l  218 (311)
                          .|..||+.+++|++.+ ++|++.-||=..+ ++++++.+. +.-|=|++.+.
T Consensus       186 ----~p~Ld~~~L~~I~~~~-~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~  236 (284)
T PRK09195        186 ----EPKLDFDRLENIRQWV-NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK  236 (284)
T ss_pred             ----CCcCCHHHHHHHHHHh-CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence                2358999999999998 7999988865544 556677765 88888888874

>TIGR03247 glucar-dehydr glucarate dehydratase

Probab=95.19  E-value=0.51  Score=46.52  Aligned_cols=121  Identities=11%  Similarity=0.136  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHH-HHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~-~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +|+.+++-|+.. .+.||..+-|-.|-+               +++.-.+.++++|+++ ++.+.|-..-+|+.    ++
T Consensus       180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDAN~~wt~----~~  240 (441)
T TIGR03247       180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFPQARITLDPNGAWSL----DE  240 (441)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HH
Confidence            577776666544 446999998865421               2234456677888765 23344444444543    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ..++++.+++. +.+|               |+ ..++-|    ++..+++++.. ++||.+.=.+.++.++.++++.  
T Consensus       241 Ai~~~~~Le~~-~~~i---------------Ee-Pv~~~d~~~~~~~la~Lr~~~-~iPIa~dEs~~~~~~~~~li~~~a  302 (441)
T TIGR03247       241 AIALCKDLKGV-LAYA---------------ED-PCGAEQGYSGREVMAEFRRAT-GLPTATNMIATDWRQMGHALQLQA  302 (441)
T ss_pred             HHHHHHHhhhh-hceE---------------eC-CCCcccccchHHHHHHHHHhC-CCCEEcCCccCCHHHHHHHHHhCC
Confidence            78899999886 5543               11 112234    78889999987 7999887788999999999875  


Q ss_pred             cCEEEE
Q psy2386         208 IDGVML  213 (311)
Q Consensus       208 adgVmi  213 (311)
                      +|.++.
T Consensus       303 vdi~~~  308 (441)
T TIGR03247       303 VDIPLA  308 (441)
T ss_pred             CCEEec
Confidence            777654

Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.17  E-value=0.34  Score=44.72  Aligned_cols=68  Identities=13%  Similarity=0.172  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-+..+.++|+|+|.+. .                 ...+.++++.+.. +++|+.+.||| +++.+.++.+. +|++.+
T Consensus       200 eea~eA~~~gaD~I~LD-~-----------------~~~e~l~~~v~~~~~~i~leAsGGI-t~~ni~~~a~tGvD~Isv  260 (277)
T PRK05742        200 DELRQALAAGADIVMLD-E-----------------LSLDDMREAVRLTAGRAKLEASGGI-NESTLRVIAETGVDYISI  260 (277)
T ss_pred             HHHHHHHHcCCCEEEEC-C-----------------CCHHHHHHHHHHhCCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence            33566678999999662 1                 2345566655543 47999999999 58999999887 999999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      |.-...-|+
T Consensus       261 g~lt~s~~~  269 (277)
T PRK05742        261 GAMTKDVKA  269 (277)
T ss_pred             ChhhcCCcc
Confidence            975544443

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=95.16  E-value=0.28  Score=45.12  Aligned_cols=64  Identities=14%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-+..+.++|+|+|-+..                  ...+.++++.+..+ ++|+.+.||| +++.+.++.+. +|++.+
T Consensus       193 eea~~A~~~gaDyI~ld~------------------~~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav  253 (268)
T cd01572         193 EQLKEALEAGADIIMLDN------------------MSPEELREAVALLKGRVLLEASGGI-TLENIRAYAETGVDYISV  253 (268)
T ss_pred             HHHHHHHHcCCCEEEECC------------------cCHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence            335566789999997742                  23466777776553 4999999999 58999999987 999999


Q ss_pred             ehhhh
Q psy2386         214 GREAY  218 (311)
Q Consensus       214 gRa~l  218 (311)
                      |+-..
T Consensus       254 ~sl~~  258 (268)
T cd01572         254 GALTH  258 (268)
T ss_pred             Eeeec
Confidence            97554

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=95.15  E-value=0.27  Score=46.61  Aligned_cols=104  Identities=11%  Similarity=0.152  Sum_probs=65.1

Q ss_pred             CCCCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          43 AEEHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        43 ~~~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      .++-|+.+=+.       |.++++..+.++.++++|+|.|++..|...........-......+-...+..+.+++.+++
T Consensus       214 G~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i  293 (338)
T cd04733         214 GPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT  293 (338)
T ss_pred             CCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCC
Confidence            45668888774       67899999999999999999999998864332211000001111122335677788888899


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      ||.+-=++  ..      ..++.+.+++.++|.|.+ ||.
T Consensus       294 PVi~~G~i--~t------~~~a~~~l~~g~aD~V~l-gR~  324 (338)
T cd04733         294 PLMVTGGF--RT------RAAMEQALASGAVDGIGL-ARP  324 (338)
T ss_pred             CEEEeCCC--CC------HHHHHHHHHcCCCCeeee-ChH
Confidence            99885443  11      223444455556888866 554

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=95.14  E-value=1.9  Score=38.02  Aligned_cols=174  Identities=8%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecce----eccccc-CCchhccccCCC-CCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMF----TTQAIL-GNKKHCLDFNAE-EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI   75 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv----~a~~l~-~~~~~~l~~~~~-~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~I   75 (311)
                      |+|+..==.+|.+.|+.   +-.||    |.+.+- .....+...-+. -.+++| +...+++.+.+.   +++++.|.|
T Consensus         9 Gi~~~eda~~~~~~Gad---~iGfI~~~~S~R~V~~~~a~~i~~~~~~~i~~VgV-f~~~~~~~i~~~---~~~~~~d~v   81 (210)
T PRK01222          9 GITTPEDAEAAAELGAD---AIGFVFYPKSPRYVSPEQAAELAAALPPFVKVVGV-FVNASDEEIDEI---VETVPLDLL   81 (210)
T ss_pred             CCCcHHHHHHHHHcCCC---EEEEccCCCCCCcCCHHHHHHHHHhCCCCCCEEEE-EeCCCHHHHHHH---HHhcCCCEE
Confidence            67777777888888853   22223    122111 111122222222 233333 335677776544   558899999


Q ss_pred             EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386          76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus        76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      .||-..                +++.    ++.+++..++++.-.+++...  .   ++.. .... ...+|++.+...+
T Consensus        82 QLHg~e----------------~~~~----~~~l~~~~~~~iik~i~v~~~--~---~l~~-~~~~-~~~~d~~L~Ds~~  134 (210)
T PRK01222         82 QLHGDE----------------TPEF----CRQLKRRYGLPVIKALRVRSA--G---DLEA-AAAY-YGDADGLLLDAYV  134 (210)
T ss_pred             EECCCC----------------CHHH----HHHHHhhcCCcEEEEEecCCH--H---HHHH-HHhh-hccCCEEEEcCCC
Confidence            998322                2333    445555556776555555311  1   1111 1111 2358899888665


Q ss_pred             cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCC
Q psy2386         156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P  221 (311)
                      . ..|-+|.      ..||+.+.   +.. ..|++..|||. ++.+.+++..  .+||=+.+|+=..|
T Consensus       135 ~-~~GGtG~------~~dw~~l~---~~~-~~p~~LAGGi~-peNv~~ai~~~~p~gvDvsSgvE~~~  190 (210)
T PRK01222        135 G-LPGGTGK------TFDWSLLP---AGL-AKPWILAGGLN-PDNVAEAIRQVRPYGVDVSSGVESAP  190 (210)
T ss_pred             C-CCCCCCC------ccchHHhh---hcc-CCCEEEECCCC-HHHHHHHHHhcCCCEEEecCceECCC
Confidence            3 2233343      36898772   233 46999999996 6788888864  88888888875434

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=95.11  E-value=0.43  Score=43.05  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCCEEEec-------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          63 SAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      .|++++++||+.|=+-       .|-|-.         .+ -..+.+.+.++.|.+.+++||+|-+..|+-+.  .....
T Consensus        21 SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~---------~~-lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~--~~~v~   88 (238)
T PF13714_consen   21 SARLAERAGFDAIATSGAGVAASLGYPDG---------GL-LTLTEMLAAVRRIARAVSIPVIVDADTGYGND--PENVA   88 (238)
T ss_dssp             HHHHHHHTT-SEEEEHHHHHHHHTTS-SS---------S--S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSS--HHHHH
T ss_pred             HHHHHHHcCCCEEEechHHHHHHcCCCCC---------CC-CCHHHHHHHHHHHHhhhcCcEEEEcccccCch--hHHHH
Confidence            5788999999998875       233321         12 24556678888888889999999999998662  22577


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHH---hC--CCCeEEEecCCCC--HHHHHHHHh-
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKK---DF--PELEIIINGGIKT--KKEIDLHLN-  206 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~---~~--~~ipvi~nGgI~s--~~da~~~l~-  206 (311)
                      +.++.++++|+..|++-....   |..++ +    ..+. +++.+|+.   ..  +++-|++==|...  .+...+.++ 
T Consensus        89 ~tv~~~~~aG~agi~IEDq~~---~~~~~-~----l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R  160 (238)
T PF13714_consen   89 RTVRELERAGAAGINIEDQRC---GHGGK-Q----LVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIER  160 (238)
T ss_dssp             HHHHHHHHCT-SEEEEESBST---TTSTT------B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEeecccc---CCCCC-c----eeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHH
Confidence            889999999999999975411   11111 1    1122 34444443   22  3566666667643  333333332 


Q ss_pred             ------h-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         207 ------Y-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       207 ------~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                            . ||+|++=-.  .+..-++++.+.+
T Consensus       161 ~~aY~eAGAD~ifi~~~--~~~~~i~~~~~~~  190 (238)
T PF13714_consen  161 AKAYAEAGADMIFIPGL--QSEEEIERIVKAV  190 (238)
T ss_dssp             HHHHHHTT-SEEEETTS--SSHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEeCCC--CCHHHHHHHHHhc
Confidence                  2 999997421  3333344554443

...

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=95.10  E-value=0.28  Score=45.52  Aligned_cols=126  Identities=6%  Similarity=0.057  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-++.+.+ .|+++|=++-          ..|-...-..+.-.++++.+++.+  .+||.+-+-  ..   +.
T Consensus        21 iD~~~~~~li~~l~~~~Gv~gi~v~G----------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg--~~---~t   85 (293)
T PRK04147         21 IDEQGLRRLVRFNIEKQGIDGLYVGG----------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVG--SV---NT   85 (293)
T ss_pred             cCHHHHHHHHHHHHhcCCCCEEEECC----------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCC--CC---CH
Confidence            467889999999988 9999998872          233333334444456666666655  367776432  11   23


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      ++.+++++.+++.|+|++.+.+-.  +...+       ...-+++.+++.+++ ++||+ .|     |---+++.+.++.
T Consensus        86 ~~ai~~a~~a~~~Gad~v~v~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPv~iYn~P~~tg~~l~~~~l~~L~  155 (293)
T PRK04147         86 AEAQELAKYATELGYDAISAVTPF--YYPFS-------FEEICDYYREIIDSA-DNPMIVYNIPALTGVNLSLDQFNELF  155 (293)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCc--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCchhhccCCCHHHHHHHh
Confidence            367899999999999999987542  11111       011245667777776 57764 43     3334566666655

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=95.10  E-value=0.22  Score=45.91  Aligned_cols=64  Identities=14%  Similarity=0.128  Sum_probs=44.5

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +..+.++|+|+|-+..-..               .+. +.++.+++..|++|+++.||| +++.+.++.+. +|+|++|.
T Consensus       196 a~~A~~~gaD~I~ld~~~p---------------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsa  259 (272)
T cd01573         196 ALAAAEAGADILQLDKFSP---------------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAGADILVTSA  259 (272)
T ss_pred             HHHHHHcCCCEEEECCCCH---------------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcCCcEEEECh
Confidence            4445689999998754321               122 233334444357999999999 88999999987 99996665


Q ss_pred             hh
Q psy2386         216 EA  217 (311)
Q Consensus       216 a~  217 (311)
                      -.
T Consensus       260 i~  261 (272)
T cd01573         260 PY  261 (272)
T ss_pred             hh
Confidence            43

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=95.06  E-value=0.32  Score=46.43  Aligned_cols=51  Identities=25%  Similarity=0.381  Sum_probs=41.3

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCc
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPF  222 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~  222 (311)
                      +..+|+.++++++.. ++||+.-| |.+++|++.+.+. +|+|.+    ||.+...|.
T Consensus       206 ~~~~~~~l~~lr~~~-~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~  261 (351)
T cd04737         206 QKLSPADIEFIAKIS-GLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPA  261 (351)
T ss_pred             CCCCHHHHHHHHHHh-CCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCch
Confidence            346899999999987 79999885 8999999999987 999998    455444443

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=95.01  E-value=0.3  Score=45.12  Aligned_cols=68  Identities=16%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-++.+.+.|+|+|.+..                  ...+.++++++.. +.+|+.+.||| +++.+.++.+. +|+|.+
T Consensus       199 eea~~A~~~gaDyI~lD~------------------~~~e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAv  259 (277)
T PRK08072        199 EQVREAVAAGADIIMFDN------------------RTPDEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTGVDYISL  259 (277)
T ss_pred             HHHHHHHHcCCCEEEECC------------------CCHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence            335666789999997721                  2346677777654 24788899999 78999999987 999999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      |.-...-|+
T Consensus       260 g~l~~sa~~  268 (277)
T PRK08072        260 GFLTHSVKA  268 (277)
T ss_pred             ChhhcCCcc
Confidence            975543343

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=95.00  E-value=0.19  Score=44.33  Aligned_cols=108  Identities=16%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ++..=+|.-     +.++..++++.+.+.|+..+-|.-|+.               .-++.|+++++.+|+ -+++.|-|
T Consensus         9 ~liaVlr~~-----~~e~a~~~~~al~~~Gi~~iEit~~t~---------------~a~~~i~~l~~~~~~-~~vGAGTV   67 (204)
T TIGR01182         9 KIVPVIRID-----DVDDALPLAKALIEGGLRVLEVTLRTP---------------VALDAIRLLRKEVPD-ALIGAGTV   67 (204)
T ss_pred             CEEEEEecC-----CHHHHHHHHHHHHHcCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEEEEeC
Confidence            555556742     233678999999999999999987763               246789999998864 57999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      .|++++++.++. ++.++.= +  -||.+.+..+++  +-...+-..|+.|+...
T Consensus        68 l~~~~a~~a~~aGA~FivsP-~--~~~~v~~~~~~~--~i~~iPG~~TptEi~~A  117 (204)
T TIGR01182        68 LNPEQLRQAVDAGAQFIVSP-G--LTPELAKHAQDH--GIPIIPGVATPSEIMLA  117 (204)
T ss_pred             CCHHHHHHHHHcCCCEEECC-C--CCHHHHHHHHHc--CCcEECCCCCHHHHHHH
Confidence            999999999987 9988542 2  266666555432  11111134677776654

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>TIGR00284 dihydropteroate synthase-related protein

Probab=94.93  E-value=0.13  Score=51.29  Aligned_cols=51  Identities=18%  Similarity=0.287  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      +.+.+-|+...+.|+|.||||++...+             .++.+..+|+++++.+++||||-.
T Consensus       165 ~~i~~~A~~~~~~GADIIDIG~~st~p-------------~~~~v~~~V~~l~~~~~~pISIDT  215 (499)
T TIGR00284       165 DGIEGLAARMERDGADMVALGTGSFDD-------------DPDVVKEKVKTALDALDSPVIADT  215 (499)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCCC-------------cHHHHHHHHHHHHhhCCCcEEEeC
Confidence            555566666667899999999776533             345789999999988789999964

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=94.90  E-value=0.98  Score=42.58  Aligned_cols=123  Identities=12%  Similarity=0.045  Sum_probs=78.6

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE-E
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV-K  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv-K  120 (311)
                      +....|++ =+...|.-    .|+++.++|+|.|=+.  -...++ --|+-+.+--..+.+...+++|++.+..|++| -
T Consensus        31 k~~g~kiv-mlTAyD~~----sA~i~d~aGvD~ILVG--DSlgmv-~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaD  102 (332)
T PLN02424         31 YRRGEPIT-MVTAYDYP----SAVHVDSAGIDVCLVG--DSAAMV-VHGHDTTLPITLDEMLVHCRAVARGANRPLLVGD  102 (332)
T ss_pred             HhCCCcEE-EEecCCHH----HHHHHHHcCCCEEEEC--CcHHHH-hcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeC
Confidence            33334443 34444433    4678889999998764  222221 12344445556778888889999988999888 7


Q ss_pred             EeccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      +-.|.... +.++.++.+.++ .+.|+++|-+-|...               ...+.|+.+.+.  .|||+
T Consensus       103 mPfgSY~~-s~e~av~nA~rl~~eaGa~aVKlEGg~~---------------~~~~~I~~l~~~--GIPV~  155 (332)
T PLN02424        103 LPFGSYES-STDQAVESAVRMLKEGGMDAVKLEGGSP---------------SRVTAAKAIVEA--GIAVM  155 (332)
T ss_pred             CCCCCCCC-CHHHHHHHHHHHHHHhCCcEEEECCCcH---------------HHHHHHHHHHHc--CCCEE
Confidence            77763322 233556667776 679999999987631               123667777743  68888

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=94.88  E-value=0.42  Score=45.51  Aligned_cols=94  Identities=17%  Similarity=0.286  Sum_probs=64.4

Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------ccccCCCCc---------------------
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FLKKLNPKQ---------------------  165 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~~G~~g~~---------------------  165 (311)
                      .|...-+-...|..    .+.+++++++++|+++|.+|--+.        ...|++-+.                     
T Consensus       118 ~~~w~Qly~~~d~~----~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~  193 (344)
T cd02922         118 QPLFFQLYVNKDRT----KTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMS  193 (344)
T ss_pred             CcEEEEEeecCCHH----HHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHh
Confidence            56665555443322    467889999999999999883221        011221000                     


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      ....+...|+.++++++.. ++||+.- +|.+++|+..+.+. +|+|.+.
T Consensus       194 ~~~~~~~~~~~i~~l~~~~-~~PvivK-gv~~~~dA~~a~~~G~d~I~vs  241 (344)
T cd02922         194 GFIDPTLTWDDIKWLRKHT-KLPIVLK-GVQTVEDAVLAAEYGVDGIVLS  241 (344)
T ss_pred             hccCCCCCHHHHHHHHHhc-CCcEEEE-cCCCHHHHHHHHHcCCCEEEEE
Confidence            0112346899999999988 7999887 77899999999876 9999885

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=94.88  E-value=1.3  Score=40.70  Aligned_cols=144  Identities=10%  Similarity=0.042  Sum_probs=76.8

Q ss_pred             HHHHHHHcCCCEEEec-------cCCCccccccCcc-------cCcc-----cCC--hHHHHHHHHHHhcc-ccceeEEE
Q psy2386          63 SAKIIQKWGYDEINLN-------CGCPSNRVQNGFF-------GAIL-----MTK--PLLVSDCIKAMRDS-VEIDITVK  120 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~-------G~~L-----l~~--~~~~~~iv~~v~~~-~~~pvsvK  120 (311)
                      ..+.+.+.|+.+|.+-       .|-|.+.......       -.++     +.+  ++...+-+...++. .+.|+.+-
T Consensus        25 ~~~~~~~~g~g~vv~kti~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~pvi~s  104 (289)
T cd02810          25 LIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEFPGQPLIAS  104 (289)
T ss_pred             HHHHHHHcCCCeEEeCcccCCCCCCCCCCCEEEeccccccCcccceEeecCCCCCcCHHHHHHHHHHHHhccCCCeEEEE
Confidence            3455567788888874       2444443332110       0111     222  33333333334443 47898887


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCCHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKTKK  199 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s~~  199 (311)
                      ++-. +    .+++.+.++.++++|+|+|.++.......+  +..-...+..-.+.++++++.+ ++||+.= +...+.+
T Consensus       105 i~g~-~----~~~~~~~a~~~~~~G~d~ielN~~cP~~~~--~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~  176 (289)
T cd02810         105 VGGS-S----KEDYVELARKIERAGAKALELNLSCPNVGG--GRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLE  176 (289)
T ss_pred             eccC-C----HHHHHHHHHHHHHhCCCEEEEEcCCCCCCC--CcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHH
Confidence            7642 1    235788999999999999999854321111  0000001111235677888877 7888742 3334544


Q ss_pred             HHHHH---Hhh--cCEEEEe
Q psy2386         200 EIDLH---LNY--IDGVMLG  214 (311)
Q Consensus       200 da~~~---l~~--adgVmig  214 (311)
                      +..++   +..  +|+|.+-
T Consensus       177 ~~~~~a~~l~~~Gad~i~~~  196 (289)
T cd02810         177 DIVELAKAAERAGADGLTAI  196 (289)
T ss_pred             HHHHHHHHHHHcCCCEEEEE
Confidence            44433   333  9999985

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>KOG0623|consensus

Probab=94.85  E-value=0.063  Score=50.28  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..|+.+++++.|+..|.+..-+.  .|.       -...|.++++-++..+ +||||++.|--+|+...+.++.  ||+.
T Consensus       443 v~ELtrAcEalGAGEiLLNCiD~--DGs-------n~GyDieLv~lvkdsV-~IPVIASSGAG~P~HFeEvF~kT~adAa  512 (541)
T KOG0623|consen  443 VFELTRACEALGAGEILLNCIDC--DGS-------NKGYDIELVKLVKDSV-GIPVIASSGAGTPDHFEEVFEKTNADAA  512 (541)
T ss_pred             hhhHHHHHHHhCcchheeeeecc--CCC-------CCCcchhHHHHhhccc-CCceEecCCCCCcHHHHHHHHhcCchhh
Confidence            56899999999999998876653  221       1125899999999998 8999999999999999999976  7754

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=94.79  E-value=0.8  Score=43.70  Aligned_cols=147  Identities=17%  Similarity=0.111  Sum_probs=89.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~  114 (311)
                      ..|...|=.|  .+.+..-.+..++.|...+-==+.          |+.-+     -||..++|.+++.    ++.+ ++
T Consensus       141 tsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lq-----Iga~~~~n~~LL~----~va~-t~  208 (352)
T PRK13396        141 TSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQ-----VGARNMQNFSLLK----KVGA-QD  208 (352)
T ss_pred             CCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEE-----ECcccccCHHHHH----HHHc-cC
Confidence            4454444333  566666666667777655422111          44433     5888999988754    4443 48


Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccc-cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLK-KLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~-G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      +||.+|--..-+    .+++...++.+.+.|...|+ +|..++.+. +|.      ....||..+..+++.. ++|||..
T Consensus       209 kPVllk~G~~~t----~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~------~~~~dl~ai~~lk~~~-~lPVi~D  277 (352)
T PRK13396        209 KPVLLKRGMAAT----IDEWLMAAEYILAAGNPNVILCERGIRTFDRQYT------RNTLDLSVIPVLRSLT-HLPIMID  277 (352)
T ss_pred             CeEEEeCCCCCC----HHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCC------CCCcCHHHHHHHHHhh-CCCEEEC
Confidence            999999655322    33567778888899986555 554333232 332      2347999999999887 7999876


Q ss_pred             c----CCCC--HHHHHHHHhh-cCEEEEe
Q psy2386         193 G----GIKT--KKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       193 G----gI~s--~~da~~~l~~-adgVmig  214 (311)
                      -    |.++  +.-+...+.. |||+||=
T Consensus       278 psH~~G~sd~~~~~a~AAva~GAdGliIE  306 (352)
T PRK13396        278 PSHGTGKSEYVPSMAMAAIAAGTDSLMIE  306 (352)
T ss_pred             CcccCCcHHHHHHHHHHHHhhCCCeEEEE
Confidence            2    2222  2223333333 9999986

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=94.75  E-value=0.28  Score=42.97  Aligned_cols=108  Identities=14%  Similarity=0.121  Sum_probs=69.5

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ++..=+|.. +    .++..++++.+.+.|+..+-|.-|+.               .-++.|+++++.+|+ -+++.|.|
T Consensus         9 ~iiaVir~~-~----~~~a~~~~~al~~gGi~~iEiT~~t~---------------~a~~~I~~l~~~~p~-~~vGAGTV   67 (196)
T PF01081_consen    9 KIIAVIRGD-D----PEDAVPIAEALIEGGIRAIEITLRTP---------------NALEAIEALRKEFPD-LLVGAGTV   67 (196)
T ss_dssp             SEEEEETTS-S----GGGHHHHHHHHHHTT--EEEEETTST---------------THHHHHHHHHHHHTT-SEEEEES-
T ss_pred             CEEEEEEcC-C----HHHHHHHHHHHHHCCCCEEEEecCCc---------------cHHHHHHHHHHHCCC-CeeEEEec
Confidence            455556642 1    22578999999999999999988873               246889999998876 57899999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      .|.+++++.++. |+.++.=   --||.+.+...+.  +-...+-.-|+.|+...
T Consensus        68 ~~~e~a~~a~~aGA~FivSP---~~~~~v~~~~~~~--~i~~iPG~~TptEi~~A  117 (196)
T PF01081_consen   68 LTAEQAEAAIAAGAQFIVSP---GFDPEVIEYAREY--GIPYIPGVMTPTEIMQA  117 (196)
T ss_dssp             -SHHHHHHHHHHT-SEEEES---S--HHHHHHHHHH--TSEEEEEESSHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCcccCCcCCHHHHHHH
Confidence            999999999987 9988762   1455555544432  11111124577787654

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=94.74  E-value=2.5  Score=36.49  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=82.0

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~~  126 (311)
                      +++-|=-.++++..+.++.+.+. ++.|+++  -|.-  ..  .|          .+.++.+++. .++|+.+-.... +
T Consensus         3 ~~~a~d~~~~~~~~~~~~~l~~~-i~~ieig--~~~~--~~--~g----------~~~i~~i~~~~~~~~i~~~~~v~-~   64 (202)
T cd04726           3 LQVALDLLDLEEALELAKKVPDG-VDIIEAG--TPLI--KS--EG----------MEAVRALREAFPDKIIVADLKTA-D   64 (202)
T ss_pred             eEEEEcCCCHHHHHHHHHHhhhc-CCEEEcC--CHHH--HH--hC----------HHHHHHHHHHCCCCEEEEEEEec-c
Confidence            34445455788888888888887 9999994  2221  11  12          3556666664 477876632221 1


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-cCCCCHHHHHHHH
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-GGIKTKKEIDLHL  205 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-GgI~s~~da~~~l  205 (311)
                      . .     ..+++.+.++|++++++|+....  .           ..-+.++.+++ . +++++.. =+..|++++.+.+
T Consensus        65 ~-~-----~~~~~~~~~aGad~i~~h~~~~~--~-----------~~~~~i~~~~~-~-g~~~~v~~~~~~t~~e~~~~~  123 (202)
T cd04726          65 A-G-----ALEAEMAFKAGADIVTVLGAAPL--S-----------TIKKAVKAAKK-Y-GKEVQVDLIGVEDPEKRAKLL  123 (202)
T ss_pred             c-c-----HHHHHHHHhcCCCEEEEEeeCCH--H-----------HHHHHHHHHHH-c-CCeEEEEEeCCCCHHHHHHHH
Confidence            1 1     24568889999999999986420  0           01234555554 3 6777663 7788999998877


Q ss_pred             hh-cCEEEEe
Q psy2386         206 NY-IDGVMLG  214 (311)
Q Consensus       206 ~~-adgVmig  214 (311)
                      .. +|.|.++
T Consensus       124 ~~~~d~v~~~  133 (202)
T cd04726         124 KLGVDIVILH  133 (202)
T ss_pred             HCCCCEEEEc
Confidence            64 9999885

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=94.72  E-value=0.47  Score=44.79  Aligned_cols=113  Identities=9%  Similarity=0.067  Sum_probs=71.4

Q ss_pred             ccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKI  169 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~  169 (311)
                      .+++.+.+|+.. +-.+.+++... .|+.+-+-.......+   ..++.+.++..+++++.+|--..  +...    ...
T Consensus        89 s~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~~~~---~~~~~~~i~~~~adalel~l~~~--q~~~----~~~  158 (326)
T cd02811          89 SQRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLNGYG---VEEARRAVEMIEADALAIHLNPL--QEAV----QPE  158 (326)
T ss_pred             CchhhccChhhh-hHHHHHHHhCCCceEEeecCccccCCCC---HHHHHHHHHhcCCCcEEEeCcch--Hhhc----CCC
Confidence            344456778866 56677777664 8887755432211112   23556666777899999985321  1100    001


Q ss_pred             CcCcH----HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKY----NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~----~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +.-||    +.++.+++.+ ++||+.  +|.-.|.++++.+.+. +|+|.++
T Consensus       159 ~~~df~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vs  209 (326)
T cd02811         159 GDRDFRGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVA  209 (326)
T ss_pred             CCcCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            12245    5688888887 799986  5666889999888776 9999984

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=94.71  E-value=1.3  Score=42.38  Aligned_cols=147  Identities=17%  Similarity=0.152  Sum_probs=92.0

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          53 GDNEPKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        53 ~g~~~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      -|-..+.+....+.+.+.|...+-=           .. ||.-+     -||..+.+.+++.++    .+ +++||.+|.
T Consensus       164 ~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk-----I~s~~~~n~~LL~~~----a~-~gkPVilk~  232 (360)
T PRK12595        164 QGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ-----IGARNMQNFELLKAA----GR-VNKPVLLKR  232 (360)
T ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE-----ECcccccCHHHHHHH----Hc-cCCcEEEeC
Confidence            3555677777778888888655322           12 55544     588889998765544    33 589999986


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-H
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-K  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~  199 (311)
                      -..-+    .+++...+..+.+.|...|+ +|-.+..|..      .....+|+..+..+++.+ ++||+.+-|=... .
T Consensus       233 G~~~t----~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~------~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r  301 (360)
T PRK12595        233 GLSAT----IEEFIYAAEYIMSQGNGQIILCERGIRTYEK------ATRNTLDISAVPILKQET-HLPVMVDVTHSTGRR  301 (360)
T ss_pred             CCCCC----HHHHHHHHHHHHHCCCCCEEEECCccCCCCC------CCCCCcCHHHHHHHHHHh-CCCEEEeCCCCCcch
Confidence            64322    33567778888899986555 4522221221      111236999999999987 7999995444332 1


Q ss_pred             -----HHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         200 -----EIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       200 -----da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                           -+...... |||+||=+=.  ||..
T Consensus       302 ~~~~~~a~aAva~GAdg~~iE~H~--dp~~  329 (360)
T PRK12595        302 DLLLPTAKAALAIGADGVMAEVHP--DPAV  329 (360)
T ss_pred             hhHHHHHHHHHHcCCCeEEEEecC--CCCC
Confidence                 22233333 9999998655  5543

>PRK15129 L-Ala-D/L-Glu epimerase; Provisional

Probab=94.69  E-value=1.7  Score=40.87  Aligned_cols=129  Identities=14%  Similarity=0.125  Sum_probs=82.2

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .|+..-+.-.+|+++.+.++...+.||..+-|-.| |               +.  -.+.++++++.+  | .+++|+..
T Consensus       119 i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~KlKv~-~---------------~~--d~~~v~avr~~~--~-~~~l~vDa  177 (321)
T PRK15129        119 VTTAQTVVIGTPEQMANSASALWQAGAKLLKVKLD-N---------------HL--ISERMVAIRSAV--P-DATLIVDA  177 (321)
T ss_pred             eeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeCC-C---------------ch--HHHHHHHHHHhC--C-CCeEEEEC
Confidence            45545555567888888777777789999988642 1               11  125577777765  2 45556532


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l  205 (311)
                      ...-+.++..++++.+.+.++.+|-               +. .++.+++..+++.  . .+||.+.=.+.++.|+.++.
T Consensus       178 N~~w~~~~A~~~~~~l~~~~i~~iE---------------qP-~~~~~~~~l~~~~--~-~~pia~dEs~~~~~d~~~~~  238 (321)
T PRK15129        178 NESWRAEGLAARCQLLADLGVAMLE---------------QP-LPAQDDAALENFI--H-PLPICADESCHTRSSLKALK  238 (321)
T ss_pred             CCCCCHHHHHHHHHHHHhcCceEEE---------------CC-CCCCcHHHHHHhc--c-CCCEecCCCCCCHHHHHHHH
Confidence            2222233567888889998888872               11 1223555444432  2 58999888899999998875


Q ss_pred             hhcCEEEEe
Q psy2386         206 NYIDGVMLG  214 (311)
Q Consensus       206 ~~adgVmig  214 (311)
                      ..+|+|.+=
T Consensus       239 ~~~d~v~~k  247 (321)
T PRK15129        239 GRYEMVNIK  247 (321)
T ss_pred             hhCCEEEeC
Confidence            348877765

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=94.66  E-value=1.8  Score=41.30  Aligned_cols=103  Identities=11%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEe-ccC-C-------C----------CCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHR-IGI-D-------D----------INSYDFVRDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~-~-------~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                      .+|-+...++++..+. .+++|-.-+- +|- .       +          +..+-+..+..+.+++.|+|.|.+.=.|.
T Consensus       119 eeNI~~Trevve~Ah~-~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~  197 (347)
T PRK13399        119 DYNVDVTRRVTEMAHA-VGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTS  197 (347)
T ss_pred             HHHHHHHHHHHHHHHH-cCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccc
Confidence            3456677777766544 3666655442 110 0       1          00011234445555778999997643331


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                       -+-|.++.....+..+|+.+++|++.++++|++.-|+=..+++
T Consensus       198 -HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~  240 (347)
T PRK13399        198 -HGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQE  240 (347)
T ss_pred             -cCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHH
Confidence             0111110000112379999999999985699999998776633

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=94.62  E-value=0.39  Score=44.71  Aligned_cols=84  Identities=15%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      ..|+.+.+-...+.    +...+.++.+++.|++.|.+|.-... .|     .+    ..|+.++++++.+ ++||+.- 
T Consensus       115 ~~~~~~ql~~~~~~----~~~~~~i~~~~~~g~~~i~l~~~~p~-~~-----~~----~~~~~i~~l~~~~-~~pvivK-  178 (299)
T cd02809         115 PGPRWFQLYVPRDR----EITEDLLRRAEAAGYKALVLTVDTPV-LG-----RR----LTWDDLAWLRSQW-KGPLILK-  178 (299)
T ss_pred             CCCeEEEEeecCCH----HHHHHHHHHHHHcCCCEEEEecCCCC-CC-----CC----CCHHHHHHHHHhc-CCCEEEe-
Confidence            36888877653322    24567788889999999999865431 11     11    4789999999988 6998876 


Q ss_pred             CCCCHHHHHHHHhh-cCEEEE
Q psy2386         194 GIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       194 gI~s~~da~~~l~~-adgVmi  213 (311)
                      ++.|+++++.+.+. +|+|.+
T Consensus       179 ~v~s~~~a~~a~~~G~d~I~v  199 (299)
T cd02809         179 GILTPEDALRAVDAGADGIVV  199 (299)
T ss_pred             ecCCHHHHHHHHHCCCCEEEE
Confidence            47999999998876 999988

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=94.58  E-value=0.87  Score=40.97  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-----CcHH
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI-----NSYD  132 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-----~~~~  132 (311)
                      ..+.+-.+.|.+.||+.|||+-|.            -=+ ..+.-.+.++.+++.   -+.||--+|..+.     .+.+
T Consensus        71 ~~~~~Yl~~~k~lGf~~IEiS~G~------------~~i-~~~~~~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~  134 (237)
T TIGR03849        71 GKFDEYLNECDELGFEAVEISDGS------------MEI-SLEERCNLIERAKDN---GFMVLSEVGKKSPEKDSELTPD  134 (237)
T ss_pred             hhHHHHHHHHHHcCCCEEEEcCCc------------cCC-CHHHHHHHHHHHHhC---CCeEeccccccCCcccccCCHH
Confidence            345555567889999999998442            212 233444566666543   2333333332221     2234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCcccc-ccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFL-KKLNPKQNRKIPILKYNFVYNLKKDFP  185 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~-~G~~g~~~~~~~~~~~~~i~~i~~~~~  185 (311)
                      +.++.+++..++||++|.+-+|..-. -|+..    ..+..+.+.+.++.+.++
T Consensus       135 ~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~----~~g~~r~d~v~~i~~~l~  184 (237)
T TIGR03849       135 DRIKLINKDLEAGADYVIIEGRESGKNIGLFD----EKGNVKEDELDVLAENVD  184 (237)
T ss_pred             HHHHHHHHHHHCCCcEEEEeehhcCCCcceeC----CCCCCchHHHHHHHhhCC
Confidence            56677777799999999999996321 13221    123456788888887663

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=94.57  E-value=1.6  Score=38.62  Aligned_cols=125  Identities=18%  Similarity=0.217  Sum_probs=80.1

Q ss_pred             EEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          49 AFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      .++|+|- ++++    |+.+.++|+|.|=+.+-.+++.          .=+++.+.+|.+.+...+ .+|.|-..     
T Consensus         4 ~vKICGi~~~ed----a~~~~~~Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~i-~~VgVf~~-----   63 (210)
T PRK01222          4 RVKICGITTPED----AEAAAELGADAIGFVFYPKSPR----------YVSPEQAAELAAALPPFV-KVVGVFVN-----   63 (210)
T ss_pred             eEEECCCCcHHH----HHHHHHcCCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCCC-CEEEEEeC-----
Confidence            4889995 4554    3455578999988875444332          135788888888765322 34444222     


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh-
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN-  206 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~-  206 (311)
                       .+   ..++.+.+++.+.+.|.+||-.                 +.++++.+++.. +++|+-.=.|.+..+.....+ 
T Consensus        64 -~~---~~~i~~~~~~~~~d~vQLHg~e-----------------~~~~~~~l~~~~-~~~iik~i~v~~~~~l~~~~~~  121 (210)
T PRK01222         64 -AS---DEEIDEIVETVPLDLLQLHGDE-----------------TPEFCRQLKRRY-GLPVIKALRVRSAGDLEAAAAY  121 (210)
T ss_pred             -CC---HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCcEEEEEecCCHHHHHHHHhh
Confidence             11   3466777889999999999852                 446788888776 577765555655555544433 


Q ss_pred             --hcCEEEEeh
Q psy2386         207 --YIDGVMLGR  215 (311)
Q Consensus       207 --~adgVmigR  215 (311)
                        .||.+++=.
T Consensus       122 ~~~~d~~L~Ds  132 (210)
T PRK01222        122 YGDADGLLLDA  132 (210)
T ss_pred             hccCCEEEEcC
Confidence              288888743

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.56  E-value=0.27  Score=43.18  Aligned_cols=108  Identities=9%  Similarity=0.048  Sum_probs=74.1

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      |+..=+|.-     +.++..++++.+.+.|+..|-|.-|+.               --.+.|+++++.+|+ -+++.|-|
T Consensus         5 ~vv~Vir~~-----~~~~a~~ia~al~~gGi~~iEit~~tp---------------~a~~~I~~l~~~~~~-~~vGAGTV   63 (201)
T PRK06015          5 PVIPVLLID-----DVEHAVPLARALAAGGLPAIEITLRTP---------------AALDAIRAVAAEVEE-AIVGAGTI   63 (201)
T ss_pred             CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHCCC-CEEeeEeC
Confidence            455556642     234678999999999999999987763               246789999988864 67999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      .|.+++++.++. ++.++.=   --||.+.+...+.  +-...+-..|+.|+...
T Consensus        64 l~~e~a~~ai~aGA~FivSP---~~~~~vi~~a~~~--~i~~iPG~~TptEi~~A  113 (201)
T PRK06015         64 LNAKQFEDAAKAGSRFIVSP---GTTQELLAAANDS--DVPLLPGAATPSEVMAL  113 (201)
T ss_pred             cCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCCEeCCCCCHHHHHHH
Confidence            999999999986 8887752   1445555444331  11111134567776544

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=94.51  E-value=0.29  Score=45.34  Aligned_cols=60  Identities=18%  Similarity=0.162  Sum_probs=39.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +++...+-|+...+.|+|.|||+.-.-.|       |+...   ...+.+..+++++++..++||||-..
T Consensus        36 ~~~~a~~~a~~~~~~GAdIIDIGgeSTrP-------g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~   98 (282)
T PRK11613         36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS   98 (282)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC
Confidence            56666666666667799999998433212       23222   23345667888888777899998654

>PLN02979 glycolate oxidase

Probab=94.46  E-value=0.55  Score=44.92  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +..+|+.++.+++.. ++|||.=| |.+++|+.++.+. +|+|.|+
T Consensus       208 ~~ltW~dl~wlr~~~-~~PvivKg-V~~~~dA~~a~~~Gvd~I~Vs  251 (366)
T PLN02979        208 RTLSWKDVQWLQTIT-KLPILVKG-VLTGEDARIAIQAGAAGIIVS  251 (366)
T ss_pred             CCCCHHHHHHHHhcc-CCCEEeec-CCCHHHHHHHHhcCCCEEEEC
Confidence            457899999999987 79977654 6799999999987 9999883

>PRK02901 O-succinylbenzoate synthase; Provisional

Probab=94.45  E-value=2  Score=40.59  Aligned_cols=134  Identities=12%  Similarity=0.100  Sum_probs=81.8

Q ss_pred             eEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEecc
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g  124 (311)
                      +-..+...+++.+.+.   +.+ .||..+-+..|=+         |    .+++.-.+.++++++.++  ..+.+-..-+
T Consensus        81 ~~~tv~~~~~e~~~~~---~~~~~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~  144 (327)
T PRK02901         81 VNATVPAVDAAQVPEV---LARFPGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGG  144 (327)
T ss_pred             eeEEeCCCCHHHHHHH---HHHhCCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCC
Confidence            3333334456554333   333 3666666654411         1    234555566777777764  3333333334


Q ss_pred             CCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      |+.    ++..++++.+ ++.++.+|-               +   |..+++..+++++.+ .+||.+.=.+++..|..+
T Consensus       145 ws~----~~Ai~~~~~L~e~~~l~~iE---------------q---P~~~~~~la~Lr~~~-~vPIA~DEs~~~~~d~~~  201 (327)
T PRK02901        145 WSV----DEAVAAARALDADGPLEYVE---------------Q---PCATVEELAELRRRV-GVPIAADESIRRAEDPLR  201 (327)
T ss_pred             CCH----HHHHHHHHHhhhccCceEEe---------------c---CCCCHHHHHHHHHhC-CCCEEeCCCCCCHHHHHH
Confidence            543    3567888888 667777661               1   112467788898887 799888778999999999


Q ss_pred             HHhh--cCEEEEehhhhhC
Q psy2386         204 HLNY--IDGVMLGREAYKN  220 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~  220 (311)
                      +++.  +|.+++==+-++.
T Consensus       202 l~~~~a~dvi~ik~~~~GG  220 (327)
T PRK02901        202 VARAGAADVAVLKVAPLGG  220 (327)
T ss_pred             HHHcCCCCEEEeCcchhCC
Confidence            9975  8888775443333

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=94.42  E-value=0.54  Score=42.92  Aligned_cols=140  Identities=15%  Similarity=0.162  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe--ccCCCCC------
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--IGIDDIN------  129 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR--~g~~~~~------  129 (311)
                      ..+.++.+.+.++|||+|||++++|-..      .... .+++.+.++.+.+.+.-++.+++-..  .+....+      
T Consensus        10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~------~~~~-~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~   82 (279)
T cd00019          10 FGLENALKRAKEIGFDTVAMFLGNPRSW------LSRP-LKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREK   82 (279)
T ss_pred             ccHHHHHHHHHHcCCCEEEEEcCCCCcc------CCCC-CCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHH
Confidence            5677888899999999999999887432      1111 25677888888877752334444211  1221211      


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEe--cC-----CCCHHH
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIIN--GG-----IKTKKE  200 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~n--Gg-----I~s~~d  200 (311)
                      ..+.+...++.+.+.|+..+.+|+...  .+. ..+...  ..-.+.++++.+..  ..+.+..-  ++     +.|+++
T Consensus        83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~--~~~-~~~~~~--~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~  157 (279)
T cd00019          83 SIERLKDEIERCEELGIRLLVFHPGSY--LGQ-SKEEGL--KRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEE  157 (279)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCCC--CCC-CHHHHH--HHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHH
Confidence            123456667777889999999986532  110 000000  00113334444321  14655431  22     578999


Q ss_pred             HHHHHhhcC
Q psy2386         201 IDLHLNYID  209 (311)
Q Consensus       201 a~~~l~~ad  209 (311)
                      +.++++.++
T Consensus       158 ~~~li~~v~  166 (279)
T cd00019         158 LKEIIDLIK  166 (279)
T ss_pred             HHHHHHhcC
Confidence            999998765

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=94.36  E-value=2.6  Score=37.26  Aligned_cols=128  Identities=13%  Similarity=0.168  Sum_probs=80.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.|+.+|+.|.|.+.+.+.|+.+.+. |--.|.|    |.+.               .-.+.++.+++. ++++.+-.= 
T Consensus        51 ~~~v~~qv~~~~~e~~i~~a~~l~~~~~~~~iKI----P~T~---------------~gl~ai~~L~~~-gi~v~~T~V-  109 (211)
T cd00956          51 DGPVSAQVVSTDAEGMVAEARKLASLGGNVVVKI----PVTE---------------DGLKAIKKLSEE-GIKTNVTAI-  109 (211)
T ss_pred             CCCEEEEEEeCCHHHHHHHHHHHHHhCCCEEEEE----cCcH---------------hHHHHHHHHHHc-CCceeeEEe-
Confidence            57899999999999999999988876 3223333    3321               123344455443 555544221 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCe-EEEecCCCCH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELE-IIINGGIKTK  198 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ip-vi~nGgI~s~  198 (311)
                       +        ..+=+....++|+++|..+ ||-. ..|..          -++.++++   .+.. +++ =+...+++++
T Consensus       110 -~--------s~~Qa~~Aa~AGA~yvsP~vgR~~-~~g~d----------g~~~i~~i~~~~~~~-~~~tkil~As~r~~  168 (211)
T cd00956         110 -F--------SAAQALLAAKAGATYVSPFVGRID-DLGGD----------GMELIREIRTIFDNY-GFDTKILAASIRNP  168 (211)
T ss_pred             -c--------CHHHHHHHHHcCCCEEEEecChHh-hcCCC----------HHHHHHHHHHHHHHc-CCCceEEecccCCH
Confidence             1        1234566678999998865 6643 22221          23444444   3343 344 4677899999


Q ss_pred             HHHHHHHhh-cCEEEEe
Q psy2386         199 KEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       199 ~da~~~l~~-adgVmig  214 (311)
                      +++.+.... ||.|=+.
T Consensus       169 ~ei~~a~~~Gad~vTv~  185 (211)
T cd00956         169 QHVIEAALAGADAITLP  185 (211)
T ss_pred             HHHHHHHHcCCCEEEeC
Confidence            999998765 9999887

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=94.34  E-value=1.5  Score=40.18  Aligned_cols=128  Identities=14%  Similarity=0.053  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE-EEEeccCCCCCcHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-VKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs-vKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      .|++++++|+|.|=+.  -....+. -|+-+.+--..+.+...+++|++....|+. +.+..+... + .++..+-+.++
T Consensus        27 sA~i~~~aG~d~ilvG--dSlgm~~-lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~-~-~e~a~~na~rl  101 (263)
T TIGR00222        27 FAKLFADAGVDVILVG--DSLGMVV-LGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA-T-PEQALKNAARV  101 (263)
T ss_pred             HHHHHHHcCCCEEEEC--ccHhHHh-cCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC-C-HHHHHHHHHHH
Confidence            5788889999998853  2222222 234444445667788888888887433322 223322221 2 33445555554


Q ss_pred             -HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---------Ee--cCC----CCHHHHHHHH
Q psy2386         142 -SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII---------IN--GGI----KTKKEIDLHL  205 (311)
Q Consensus       142 -~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---------~n--GgI----~s~~da~~~l  205 (311)
                       +++|+++|.+-+...                ..+.|+.+.+.  .|||+         ++  ||.    ++.+++.+++
T Consensus       102 ~~eaGa~aVkiEgg~~----------------~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i  163 (263)
T TIGR00222       102 MQETGANAVKLEGGEW----------------LVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLL  163 (263)
T ss_pred             HHHhCCeEEEEcCcHh----------------HHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHH
Confidence             459999999976531                23556666654  58888         33  555    3555555555


Q ss_pred             h-------h-cCEEEE
Q psy2386         206 N-------Y-IDGVML  213 (311)
Q Consensus       206 ~-------~-adgVmi  213 (311)
                      +       . |+++.+
T Consensus       164 ~~A~a~e~AGA~~ivl  179 (263)
T TIGR00222       164 EDALALEEAGAQLLVL  179 (263)
T ss_pred             HHHHHHHHcCCCEEEE
Confidence            3       1 776665

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.34  E-value=0.73  Score=40.87  Aligned_cols=110  Identities=13%  Similarity=0.006  Sum_probs=73.9

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC--eEEEec
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL--EIIING  193 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i--pvi~nG  193 (311)
                      ++..=+|..     +.++...+++.+.+.|+..+-|.-|+.               .-.+.|+++++.+++-  -++|.|
T Consensus        14 ~vi~vir~~-----~~~~a~~~~~al~~~Gi~~iEit~~~~---------------~a~~~i~~l~~~~~~~p~~~vGaG   73 (213)
T PRK06552         14 GVVAVVRGE-----SKEEALKISLAVIKGGIKAIEVTYTNP---------------FASEVIKELVELYKDDPEVLIGAG   73 (213)
T ss_pred             CEEEEEECC-----CHHHHHHHHHHHHHCCCCEEEEECCCc---------------cHHHHHHHHHHHcCCCCCeEEeee
Confidence            555556752     234678999999999999999987763               2467899999887422  479999


Q ss_pred             CCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHH
Q psy2386         194 GIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRM  250 (311)
Q Consensus       194 gI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (311)
                      -|.|++++++.++. ++.++.  . -.||.+.+...+.  +-...+-..|+.|....+
T Consensus        74 TV~~~~~~~~a~~aGA~Fivs--P-~~~~~v~~~~~~~--~i~~iPG~~T~~E~~~A~  126 (213)
T PRK06552         74 TVLDAVTARLAILAGAQFIVS--P-SFNRETAKICNLY--QIPYLPGCMTVTEIVTAL  126 (213)
T ss_pred             eCCCHHHHHHHHHcCCCEEEC--C-CCCHHHHHHHHHc--CCCEECCcCCHHHHHHHH
Confidence            99999999999987 998882  1 2344444433321  111111345677766553

>PRK05105 O-succinylbenzoate synthase; Provisional

Probab=94.30  E-value=1.3  Score=41.63  Aligned_cols=122  Identities=7%  Similarity=0.080  Sum_probs=74.7

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcH
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY  131 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~  131 (311)
                      |...+|+.+++-++..  .||..+-+.+|-               .+++.-.+.++++++.+  | .+++|+.....-+.
T Consensus       111 l~~~~~~~~~~~a~~~--~Gf~~~KvKvG~---------------~~~~~d~~~i~~vr~~~--~-~~~l~vDaN~~w~~  170 (322)
T PRK05105        111 LCYGDPDELILKLADM--PGEKVAKVKVGL---------------YEAVRDGMLVNLLLEAI--P-DLKLRLDANRGWTL  170 (322)
T ss_pred             eecCCHHHHHHHHHHc--CCCCEEEEEECC---------------CCHHHHHHHHHHHHHhC--C-CCeEEEECCCCCCH
Confidence            4445777776666544  577777765431               23444556677777765  3 34555533222223


Q ss_pred             HHHHHHHHHHHH---cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         132 DFVRDFVGTVSS---AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       132 ~~~~e~~~~l~~---~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      ++..++++.+++   .++.+|-               +.   ..+++...++++.. .+||.+.=.+.++++. ..+.. 
T Consensus       171 ~~A~~~~~~l~~~~~~~i~~iE---------------qP---~~~~~~~~~l~~~~-~~PIa~DEs~~~~~~~-~~~~~~  230 (322)
T PRK05105        171 EKAQQFAKYVPPDYRHRIAFLE---------------EP---CKTPDDSRAFARAT-GIAIAWDESLREPDFQ-FEAEPG  230 (322)
T ss_pred             HHHHHHHHHhhhhcCCCccEEE---------------CC---CCCHHHHHHHHHhC-CCCEEECCCCCchhhh-hhhcCC
Confidence            457888899988   7777771               11   12345567888887 7999888888888643 33344 


Q ss_pred             cCEEEE
Q psy2386         208 IDGVML  213 (311)
Q Consensus       208 adgVmi  213 (311)
                      +|+|++
T Consensus       231 ~d~i~i  236 (322)
T PRK05105        231 VRAIVI  236 (322)
T ss_pred             CCEEEE
Confidence            887765

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=94.29  E-value=0.56  Score=43.32  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=48.6

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~--~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +-+..+.++|+|.|.+..-+.               .+. +.+..+++..  +++.+.++||| +++.+.++.+. +|.+
T Consensus       193 eea~~a~~agaDiI~LDn~~~---------------e~l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~I  256 (278)
T PRK08385        193 EDALKAAKAGADIIMLDNMTP---------------EEIREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVI  256 (278)
T ss_pred             HHHHHHHHcCcCEEEECCCCH---------------HHHHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEE
Confidence            446666789999887754431               122 2233343322  46889999999 89999999887 9999


Q ss_pred             EEehhhhhCCc
Q psy2386         212 MLGREAYKNPF  222 (311)
Q Consensus       212 migRa~l~~P~  222 (311)
                      .+|.-...-|+
T Consensus       257 s~galt~sa~~  267 (278)
T PRK08385        257 SLGALTHSVRN  267 (278)
T ss_pred             EeChhhcCCCc
Confidence            99976553343

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=94.25  E-value=3.8  Score=36.79  Aligned_cols=139  Identities=14%  Similarity=0.144  Sum_probs=86.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+.|+=+.|+-.+|+.+.   +.+.++|+|.|-+|.= |+                 ....++++.+|+. +..+.+-+.
T Consensus        58 t~~~~DvHLMv~~P~~~i---~~~~~aGad~it~H~Ea~~-----------------~~~~~~i~~Ik~~-G~kaGlaln  116 (229)
T PRK09722         58 ASKPLDVHLMVTDPQDYI---DQLADAGADFITLHPETIN-----------------GQAFRLIDEIRRA-GMKVGLVLN  116 (229)
T ss_pred             CCCCeEEEEEecCHHHHH---HHHHHcCCCEEEECccCCc-----------------chHHHHHHHHHHc-CCCEEEEeC
Confidence            357899999999999986   4456779999999943 31                 1245677788775 655566555


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTK  198 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~  198 (311)
                      ++-    +    .+.+..+.+. +|.|.|=.-.   .|++|..  ..+ .-++-|+++++..    .++.+-.=|||+ .
T Consensus       117 P~T----~----~~~l~~~l~~-vD~VLvMsV~---PGf~GQ~--fi~-~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~  180 (229)
T PRK09722        117 PET----P----VESIKYYIHL-LDKITVMTVD---PGFAGQP--FIP-EMLDKIAELKALRERNGLEYLIEVDGSCN-Q  180 (229)
T ss_pred             CCC----C----HHHHHHHHHh-cCEEEEEEEc---CCCcchh--ccH-HHHHHHHHHHHHHHhcCCCeEEEEECCCC-H
Confidence            531    1    2233333332 6877664332   2444331  111 2345566655432    135678889998 6


Q ss_pred             HHHHHHHhh-cCEEEEehh-hhh
Q psy2386         199 KEIDLHLNY-IDGVMLGRE-AYK  219 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa-~l~  219 (311)
                      +.+.++.+. ||.+.+|++ ++.
T Consensus       181 ~~i~~~~~aGad~~V~Gss~iF~  203 (229)
T PRK09722        181 KTYEKLMEAGADVFIVGTSGLFN  203 (229)
T ss_pred             HHHHHHHHcCCCEEEEChHHHcC
Confidence            788888876 999999975 543

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=94.25  E-value=0.43  Score=41.66  Aligned_cols=50  Identities=16%  Similarity=0.384  Sum_probs=43.1

Q ss_pred             CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .|++.+..+.... ..||+..|||.-+||...+..- |+||.+|+++...--
T Consensus       168 ~~~E~l~~~~~~s-~~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~v  218 (229)
T COG1411         168 PDYELLTKVLELS-EHPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVV  218 (229)
T ss_pred             CCHHHHHHHHHhc-cCceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcC
Confidence            4899999988865 7899999999999999988865 999999999866543

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=94.24  E-value=1.6  Score=39.10  Aligned_cols=134  Identities=14%  Similarity=0.130  Sum_probs=74.5

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      ..+.+.|+|.||+-      +-..+--|   -..|..+.+|++.+..  ..|||..+--  -.... ......+......
T Consensus        14 ~~a~~~gaDiID~K------~P~~GaLG---A~~~~vi~~i~~~~~~--~~pvSAtiGD--lp~~p-~~~~~aa~~~a~~   79 (235)
T PF04476_consen   14 EEALAGGADIIDLK------NPAEGALG---ALFPWVIREIVAAVPG--RKPVSATIGD--LPMKP-GTASLAALGAAAT   79 (235)
T ss_pred             HHHHhCCCCEEEcc------CCCCCCCC---CCCHHHHHHHHHHcCC--CCceEEEecC--CCCCc-hHHHHHHHHHHhc
Confidence            34556799999994      11122222   2457777777776544  3788886642  22111 1223334445568


Q ss_pred             CCCEEEEe--cCccccccCCCCcCCCCCcCcHHHH----HHHHHhCCCCeEEEec--CCC-----CHHHHHHHHhh--cC
Q psy2386         145 GCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFV----YNLKKDFPELEIIING--GIK-----TKKEIDLHLNY--ID  209 (311)
Q Consensus       145 G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~~i----~~i~~~~~~ipvi~nG--gI~-----s~~da~~~l~~--ad  209 (311)
                      |+|+|.|-  +-.. ++            .-.+.+    +.++...++..+++.+  |-.     ++-++.+....  |+
T Consensus        80 GvdyvKvGl~g~~~-~~------------~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~  146 (235)
T PF04476_consen   80 GVDYVKVGLFGCKD-YD------------EAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFD  146 (235)
T ss_pred             CCCEEEEecCCCCC-HH------------HHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCC
Confidence            99999873  1110 00            012222    3333322345677665  443     56666666654  99


Q ss_pred             EEEEehhhhhCCcchH
Q psy2386         210 GVMLGREAYKNPFLMS  225 (311)
Q Consensus       210 gVmigRa~l~~P~i~~  225 (311)
                      +||+=++.=....+|.
T Consensus       147 gvMlDTa~Kdg~~L~d  162 (235)
T PF04476_consen  147 GVMLDTADKDGGSLFD  162 (235)
T ss_pred             EEEEecccCCCCchhh
Confidence            9999988876666664

>PLN02535 glycolate oxidase

Probab=94.23  E-value=0.59  Score=44.82  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=36.9

Q ss_pred             CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      .+..+|+.++.+++.. ++||+. .||.+++|+..+.+. +|+|.+.
T Consensus       207 ~~~~tW~~i~~lr~~~-~~Pviv-KgV~~~~dA~~a~~~GvD~I~vs  251 (364)
T PLN02535        207 DASLSWKDIEWLRSIT-NLPILI-KGVLTREDAIKAVEVGVAGIIVS  251 (364)
T ss_pred             CCCCCHHHHHHHHhcc-CCCEEE-ecCCCHHHHHHHHhcCCCEEEEe
Confidence            3457899999999986 789665 668999999999987 9999884

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea

Probab=94.23  E-value=1.5  Score=40.41  Aligned_cols=85  Identities=14%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      .=|.+.+.+-++.+.+.|+|+|=++          +..|-...-+.+.-.++++.+++.++ +|.+-+  |  . .+.++
T Consensus        16 ~iD~~~~~~li~~l~~~Gv~Gl~~~----------GstGE~~~Lt~eEr~~l~~~~~~~~~-~vi~gv--g--~-~~~~~   79 (279)
T cd00953          16 KIDKEKFKKHCENLISKGIDYVFVA----------GTTGLGPSLSFQEKLELLKAYSDITD-KVIFQV--G--S-LNLEE   79 (279)
T ss_pred             CcCHHHHHHHHHHHHHcCCcEEEEc----------ccCCCcccCCHHHHHHHHHHHHHHcC-CEEEEe--C--c-CCHHH
Confidence            4588899999999999999999987          23344444455555677776666654 343322  2  1 22346


Q ss_pred             HHHHHHHHHHcCCCEEEEecC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~R  154 (311)
                      .+++++.+++.|+|++.+..-
T Consensus        80 ai~~a~~a~~~Gad~v~v~~P  100 (279)
T cd00953          80 SIELARAAKSFGIYAIASLPP  100 (279)
T ss_pred             HHHHHHHHHHcCCCEEEEeCC
Confidence            889999999999999988643

This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=94.22  E-value=1  Score=39.68  Aligned_cols=148  Identities=16%  Similarity=0.192  Sum_probs=91.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc----cc-----CcccCcccCChHHHHHHHHHHhccccc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV----QN-----GFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v----~~-----~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.|+|.=|.+.++++-...++-+.+.|++.|||-+-.|..--    ..     --.|+.=.-+|+.+.+.+++     +-
T Consensus        12 ~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~a-----Ga   86 (211)
T COG0800          12 AQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAA-----GA   86 (211)
T ss_pred             HCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHc-----CC
Confidence            568999999999999999999999999999999888774321    01     11233333466666655443     11


Q ss_pred             eeEEEEeccCCC---------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         116 DITVKHRIGIDD---------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       116 pvsvKiR~g~~~---------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      -+.|  ..|.+.               .-.  ...| +-.+.+.|++.+.+.+-.. .+             --.+++.+
T Consensus        87 ~fiV--sP~~~~ev~~~a~~~~ip~~PG~~--TptE-i~~Ale~G~~~lK~FPa~~-~G-------------g~~~~ka~  147 (211)
T COG0800          87 QFIV--SPGLNPEVAKAANRYGIPYIPGVA--TPTE-IMAALELGASALKFFPAEV-VG-------------GPAMLKAL  147 (211)
T ss_pred             CEEE--CCCCCHHHHHHHHhCCCcccCCCC--CHHH-HHHHHHcChhheeecCccc-cC-------------cHHHHHHH
Confidence            1211  112111               000  0112 2344567777777665432 11             12567777


Q ss_pred             HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         181 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       181 ~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      +--+|++++.-.|||.. +.+.+++.. +..|-+|..+
T Consensus       148 ~gP~~~v~~~pTGGVs~-~N~~~yla~gv~avG~Gs~l  184 (211)
T COG0800         148 AGPFPQVRFCPTGGVSL-DNAADYLAAGVVAVGLGSWL  184 (211)
T ss_pred             cCCCCCCeEeecCCCCH-HHHHHHHhCCceEEecCccc
Confidence            66667899999999975 588888876 7777777544

>PRK06256 biotin synthase; Validated

Probab=94.19  E-value=1  Score=42.50  Aligned_cols=141  Identities=16%  Similarity=0.138  Sum_probs=76.7

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      +.+.++|++.+.+|+=. .+.+.+.- ..  -.+.+...+.++.+++ .++++.+-+=+|.  .++.++..+.+..+.+.
T Consensus       156 ~~LkeaG~~~v~~~lEt-s~~~~~~i-~~--~~t~~~~i~~i~~a~~-~Gi~v~~~~I~Gl--gEt~ed~~~~~~~l~~l  228 (336)
T PRK06256        156 ERLKEAGVDRYNHNLET-SRSYFPNV-VT--THTYEDRIDTCEMVKA-AGIEPCSGGIIGM--GESLEDRVEHAFFLKEL  228 (336)
T ss_pred             HHHHHhCCCEEecCCcc-CHHHHhhc-CC--CCCHHHHHHHHHHHHH-cCCeeccCeEEeC--CCCHHHHHHHHHHHHhC
Confidence            44556677777776554 44332211 11  1244555566666665 3777665555555  23445678889999999


Q ss_pred             CCCEEEEecCccccccCCCCcCCCCCcCcHHHH---HHHHHhCCCCeEEEecCC-CCHHHHH-HHHhhcCEEEEeh
Q psy2386         145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV---YNLKKDFPELEIIINGGI-KTKKEID-LHLNYIDGVMLGR  215 (311)
Q Consensus       145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i---~~i~~~~~~ipvi~nGgI-~s~~da~-~~l~~adgVmigR  215 (311)
                      |++.+.++.-+. ..|. +-++ ..++...+.+   +-++-..|+..|...||= ....+.. ..+..|+++|+|=
T Consensus       229 ~~~~v~i~~l~P-~pGT-~l~~-~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~~~~~~g~~~~~~g~  301 (336)
T PRK06256        229 DADSIPINFLNP-IPGT-PLEN-HPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQPLGLGGANSVIVGN  301 (336)
T ss_pred             CCCEEeeccccc-CCCC-CCCC-CCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhHHHHhccCceeeECC
Confidence            999988764332 1110 0001 1111233333   333344577888666664 3444443 3333499999993

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=94.16  E-value=0.55  Score=43.16  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=45.6

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF---PELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~---~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +..+.++|+|+|.+-.-+                  .+.++++.+..   +++|+.+.|||+ ++.+.++.+. +|++.+
T Consensus       194 a~~A~~~gaD~I~ld~~~------------------~e~l~~~v~~i~~~~~i~i~asGGIt-~~ni~~~a~~Gad~Isv  254 (269)
T cd01568         194 AEEALEAGADIIMLDNMS------------------PEELKEAVKLLKGLPRVLLEASGGIT-LENIRAYAETGVDVIST  254 (269)
T ss_pred             HHHHHHcCCCEEEECCCC------------------HHHHHHHHHHhccCCCeEEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence            444567899999885432                  13333333222   479999999997 7888888876 999999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      |.-...-|+
T Consensus       255 gal~~s~~~  263 (269)
T cd01568         255 GALTHSAPA  263 (269)
T ss_pred             cHHHcCCCc
Confidence            865555544

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=94.12  E-value=0.91  Score=40.24  Aligned_cols=99  Identities=12%  Similarity=0.132  Sum_probs=70.7

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      ++++.+.+.   ++..=+|.-     +.++..++++.+.+.|++.|-|.-++.               .-.+.|+++++.
T Consensus         7 ~~~~~l~~~---~~iaV~r~~-----~~~~a~~i~~al~~~Gi~~iEitl~~~---------------~~~~~I~~l~~~   63 (212)
T PRK05718          7 SIEEILRAG---PVVPVIVIN-----KLEDAVPLAKALVAGGLPVLEVTLRTP---------------AALEAIRLIAKE   63 (212)
T ss_pred             HHHHHHHHC---CEEEEEEcC-----CHHHHHHHHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHH
Confidence            445555443   455556741     233678999999999999999986652               245789999998


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +|+ -+++.|-|.+.+++++.++. ++.++.=   --+|.+.+...+
T Consensus        64 ~p~-~~IGAGTVl~~~~a~~a~~aGA~FivsP---~~~~~vi~~a~~  106 (212)
T PRK05718         64 VPE-ALIGAGTVLNPEQLAQAIEAGAQFIVSP---GLTPPLLKAAQE  106 (212)
T ss_pred             CCC-CEEEEeeccCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHH
Confidence            875 67999999999999999987 9988762   134455554443

>PRK02227 hypothetical protein; Provisional

Probab=94.07  E-value=1.7  Score=39.13  Aligned_cols=136  Identities=13%  Similarity=0.066  Sum_probs=78.9

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      ..+...|+|.||+--  |.       .|+-=-+.|..+.+|++.+...  .|||..+-  .-.... .....-+..+...
T Consensus        14 ~~Al~~GaDiIDvK~--P~-------~GaLGA~~p~vir~Iv~~~~~~--~pvSAtiG--D~p~~p-~~~~~aa~~~a~~   79 (238)
T PRK02227         14 LEALAGGADIIDVKN--PK-------EGSLGANFPWVIREIVAAVPGR--KPVSATIG--DVPYKP-GTISLAALGAAAT   79 (238)
T ss_pred             HHHHhcCCCEEEccC--CC-------CCCCCCCCHHHHHHHHHHhCCC--CCceeecc--CCCCCc-hHHHHHHHHHHhh
Confidence            345578999999941  22       2333345688888888887754  68988654  222221 1234455666678


Q ss_pred             CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH----HHHhCCCCeEEEec--CCC-----CHHHHHHHHhh--cCEE
Q psy2386         145 GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN----LKKDFPELEIIING--GIK-----TKKEIDLHLNY--IDGV  211 (311)
Q Consensus       145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~----i~~~~~~ipvi~nG--gI~-----s~~da~~~l~~--adgV  211 (311)
                      |+|+|.|- ..    |.+..      ....+.+..    ++...++..|++.+  |-.     ++.++.++...  +|++
T Consensus        80 GvDyVKvG-l~----~~~~~------~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~  148 (238)
T PRK02227         80 GADYVKVG-LY----GGKTA------EEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGA  148 (238)
T ss_pred             CCCEEEEc-CC----CCCcH------HHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEE
Confidence            99999872 21    10000      012233333    33333456777766  433     66677777754  9999


Q ss_pred             EEehhhhhCCcchH
Q psy2386         212 MLGREAYKNPFLMS  225 (311)
Q Consensus       212 migRa~l~~P~i~~  225 (311)
                      |+=++.=..-.+|.
T Consensus       149 MlDTa~Kdg~~Lfd  162 (238)
T PRK02227        149 MLDTAIKDGKSLFD  162 (238)
T ss_pred             EEecccCCCcchHh
Confidence            99776655555553

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=94.03  E-value=0.32  Score=42.85  Aligned_cols=80  Identities=15%  Similarity=0.134  Sum_probs=62.9

Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      .++..=+|.-     +.++..++++.+.+.|+..+-+.-++.               ...+.++++++.++.--++|.|.
T Consensus        10 ~~~~~v~r~~-----~~~~~~~~~~a~~~gGi~~iEvt~~~~---------------~~~~~i~~l~~~~~~~~~iGaGT   69 (206)
T PRK09140         10 LPLIAILRGI-----TPDEALAHVGALIEAGFRAIEIPLNSP---------------DPFDSIAALVKALGDRALIGAGT   69 (206)
T ss_pred             CCEEEEEeCC-----CHHHHHHHHHHHHHCCCCEEEEeCCCc---------------cHHHHHHHHHHHcCCCcEEeEEe
Confidence            3555557752     234678999999999999999986652               23468999998885334799999


Q ss_pred             CCCHHHHHHHHhh-cCEEEEe
Q psy2386         195 IKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmig  214 (311)
                      |.+.+++...++. +|+++.+
T Consensus        70 V~~~~~~~~a~~aGA~fivsp   90 (206)
T PRK09140         70 VLSPEQVDRLADAGGRLIVTP   90 (206)
T ss_pred             cCCHHHHHHHHHcCCCEEECC
Confidence            9999999999987 9999995

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=94.01  E-value=0.26  Score=49.38  Aligned_cols=70  Identities=10%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.|.++|+|.|.|.  +  ..|++-        .-.+.|+++++.+|.--.++.|.|.|+++++++++. ||+|.
T Consensus       243 ~~~ra~~Lv~aGvd~i~vd--~--a~g~~~--------~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~  310 (502)
T PRK07107        243 YAERVPALVEAGADVLCID--S--SEGYSE--------WQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVK  310 (502)
T ss_pred             HHHHHHHHHHhCCCeEeec--C--cccccH--------HHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEE
Confidence            4688999999999999986  2  223210        125789999998852235788999999999999986 99998


Q ss_pred             Eeh
Q psy2386         213 LGR  215 (311)
Q Consensus       213 igR  215 (311)
                      ||.
T Consensus       311 vg~  313 (502)
T PRK07107        311 VGI  313 (502)
T ss_pred             ECC
Confidence            853

>TIGR01496 DHPS dihydropteroate synthase

Probab=93.99  E-value=0.43  Score=43.55  Aligned_cols=60  Identities=25%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcc---cCChHHHHHHHHHHhccccceeEEEE
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAIL---MTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~L---l~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .+++...+.|+...+.|+|.||||+-...+       |+..   ....+.+..+++++++.+++||++-.
T Consensus        20 ~~~~~~~~~a~~~~~~GA~iIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT   82 (257)
T TIGR01496        20 LSVDKAVAHAERMLEEGADIIDVGGESTRP-------GADRVSPEEELNRVVPVIKALRDQPDVPISVDT   82 (257)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeC
Confidence            578888888888888999999997322222       1111   12334688888998887799998854

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=93.95  E-value=5.3  Score=37.06  Aligned_cols=151  Identities=13%  Similarity=0.072  Sum_probs=93.9

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++++++ +.++..+.|+.+++.|+|+|-+-  -|...          -.+.+-+.+-.+++.+++++||.+=-
T Consensus        71 ~~g~~pvi~gv~~-~t~~ai~~a~~a~~~Gadav~~~--pP~y~----------~~s~~~i~~~f~~v~~a~~~pvilYn  137 (296)
T TIGR03249        71 AKGKVPVYTGVGG-NTSDAIEIARLAEKAGADGYLLL--PPYLI----------NGEQEGLYAHVEAVCESTDLGVIVYQ  137 (296)
T ss_pred             hCCCCcEEEecCc-cHHHHHHHHHHHHHhCCCEEEEC--CCCCC----------CCCHHHHHHHHHHHHhccCCCEEEEe
Confidence            4556899999975 68888899999999999999773  34321          12346677778888888889988765


Q ss_pred             eccCCCCCcHHHHHHHHHHHHH-c-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec-CCCC
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSS-A-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING-GIKT  197 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~-~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG-gI~s  197 (311)
                      |.|.+-      ..+++..|.+ . .+.+|--..                  .|+..+.++.+..+ ++. +.+| |..+
T Consensus       138 ~~g~~l------~~~~~~~La~~~~nvvgiKds~------------------~d~~~~~~~~~~~~~~~~-v~~G~~~~d  192 (296)
T TIGR03249       138 RDNAVL------NADTLERLADRCPNLVGFKDGI------------------GDMEQMIEITQRLGDRLG-YLGGMPTAE  192 (296)
T ss_pred             CCCCCC------CHHHHHHHHhhCCCEEEEEeCC------------------CCHHHHHHHHHHcCCCeE-EEeCCCcch
Confidence            655432      2455666654 3 233332211                  26666777766553 343 4444 2222


Q ss_pred             HHHHHHHH-hhcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         198 KKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       198 ~~da~~~l-~~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                       ..+...+ .+++|++.|-+.+ .|.++.++.+.+.
T Consensus       193 -~~~~~~~~~Ga~G~is~~~n~-~P~~~~~~~~~~~  226 (296)
T TIGR03249       193 -VTAPAYLPLGVTSYSSAIFNF-IPHIARAFYEALR  226 (296)
T ss_pred             -hhHHHHHhCCCCEEEecHHHh-hHHHHHHHHHHHH
Confidence             2223333 3499999886654 4666666665543

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=93.93  E-value=1.8  Score=36.38  Aligned_cols=130  Identities=15%  Similarity=0.211  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +...+.++.+.+.|++.|.+-.  .+|....         ...+    +.+..+++..++|+.+.+.......    ...
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~   74 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE---------TDDK----EVLKEVAAETDLPLGVQLAINDAAA----AVD   74 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCC---------Cccc----cHHHHHHhhcCCcEEEEEccCCchh----hhh
Confidence            5666777778888899888753  2222210         0011    3445555556888888776532211    122


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~-adgVmi  213 (311)
                      ..++.+.++|+|.|.+|+-....           +....+.+.++++.++++|++..-... ..+++ .+.+. +|.|.+
T Consensus        75 ~~a~~~~~~g~d~v~l~~~~~~~-----------~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~-~~~~~g~d~i~~  142 (200)
T cd04722          75 IAAAAARAAGADGVEIHGAVGYL-----------AREDLELIRELREAVPDVKVVVKLSPTGELAAA-AAEEAGVDEVGL  142 (200)
T ss_pred             HHHHHHHHcCCCEEEEeccCCcH-----------HHHHHHHHHHHHHhcCCceEEEEECCCCccchh-hHHHcCCCEEEE
Confidence            33678899999999999664200           012456788888876567876554332 22222 12333 999998


Q ss_pred             ehh
Q psy2386         214 GRE  216 (311)
Q Consensus       214 gRa  216 (311)
                      ...
T Consensus       143 ~~~  145 (200)
T cd04722         143 GNG  145 (200)
T ss_pred             cCC
Confidence            754

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=93.90  E-value=0.63  Score=42.37  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      .|+..|+|.+++.    ++-+ .++||-.|=-++    .+.+++..-++-+.+.|-..|++.-|--  ..|   +....-
T Consensus       134 vGARNMQNF~LLk----e~G~-~~kPvLLKRg~~----aTieEwL~AAEYI~s~GN~~vILCERGI--Rtf---e~~TRn  199 (286)
T COG2876         134 VGARNMQNFALLK----EVGR-QNKPVLLKRGLS----ATIEEWLNAAEYILSHGNGNVILCERGI--RTF---EKATRN  199 (286)
T ss_pred             hcccchhhhHHHH----Hhcc-cCCCeEEecCcc----ccHHHHHHHHHHHHhCCCCcEEEEeccc--ccc---cccccc
Confidence            3555666665543    3333 489999995553    2344566667777899988888765421  111   111222


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEec-CCCCHHHHHH-----HHhh-cCEEEEehhhhhCCc
Q psy2386         171 ILKYNFVYNLKKDFPELEIIING-GIKTKKEIDL-----HLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nG-gI~s~~da~~-----~l~~-adgVmigRa~l~~P~  222 (311)
                      ..|...|..+++.. ++|||++= .-....|...     .++. |||+|+=  ...||.
T Consensus       200 tLDi~aV~~~kq~T-HLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiE--VHp~P~  255 (286)
T COG2876         200 TLDISAVPILKQET-HLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIE--VHPDPE  255 (286)
T ss_pred             eechHHHHHHHhhc-CCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEE--ecCCcc
Confidence            37899999999987 89999863 2222233322     2223 9999995  344554

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=93.88  E-value=0.34  Score=43.97  Aligned_cols=97  Identities=16%  Similarity=0.301  Sum_probs=72.8

Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEE---EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~it---vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      |...-++.+.+.+.++.+.+.|+..+-   .-+||.- ..|.|.     +.--+++++++++.. .+|++.  ++.++++
T Consensus        21 GPC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~-~sf~G~-----G~~gl~~L~~~~~~~-Gl~~~T--ev~d~~~   91 (250)
T PRK13397         21 GPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSA-ASFQGL-----GLQGIRYLHEVCQEF-GLLSVS--EIMSERQ   91 (250)
T ss_pred             ccCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCC-cccCCC-----CHHHHHHHHHHHHHc-CCCEEE--eeCCHHH
Confidence            555555666788999999999998774   3467652 222221     112367788888888 899988  8999999


Q ss_pred             HHHHHhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +..+.+.+|.+.||...+.|..+...+.+
T Consensus        92 v~~~~e~vdilqIgs~~~~n~~LL~~va~  120 (250)
T PRK13397         92 LEEAYDYLDVIQVGARNMQNFEFLKTLSH  120 (250)
T ss_pred             HHHHHhcCCEEEECcccccCHHHHHHHHc
Confidence            99887779999999999999888877754

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=93.86  E-value=2.5  Score=38.63  Aligned_cols=132  Identities=16%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~  127 (311)
                      ++.|...|-    ..|++++++|+|.|=+.  =...++. -|+.+.+--+.+.+....++|++... .-+.+-+..+...
T Consensus        18 i~~lTaYD~----~~A~~~d~agvD~iLVG--DSlgmv~-~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~DmPf~sy~   90 (261)
T PF02548_consen   18 IVMLTAYDY----PSARIADEAGVDIILVG--DSLGMVV-LGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVADMPFGSYQ   90 (261)
T ss_dssp             EEEEE--SH----HHHHHHHHTT-SEEEE---TTHHHHT-T--SSSTT--HHHHHHHHHHHHHH-TSSEEEEE--TTSST
T ss_pred             EEEEecccH----HHHHHHHHcCCCEEEeC--CcHHHhe-eCCCCCcCcCHHHHHHHHHHHHhcCCCceEEecCCccccc
Confidence            566666665    45788899999998774  2222222 24555666677888888888888774 4456677766553


Q ss_pred             CCcHHHHHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC-----------
Q psy2386         128 INSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI-----------  195 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI-----------  195 (311)
                      .+ .++.++-+.++.+ +|+|++-+-|...                ..+.|+.+.++  .|||++-=|+           
T Consensus        91 ~s-~e~av~nA~rl~ke~GadaVKlEGg~~----------------~~~~i~~l~~~--GIPV~gHiGLtPQ~~~~~GGy  151 (261)
T PF02548_consen   91 AS-PEQAVRNAGRLMKEAGADAVKLEGGAE----------------IAETIKALVDA--GIPVMGHIGLTPQSVHQLGGY  151 (261)
T ss_dssp             SS-HHHHHHHHHHHHHTTT-SEEEEEBSGG----------------GHHHHHHHHHT--T--EEEEEES-GGGHHHHTSS
T ss_pred             CC-HHHHHHHHHHHHHhcCCCEEEeccchh----------------HHHHHHHHHHC--CCcEEEEecCchhheeccCCc
Confidence            33 3355666666655 9999999987642                35789999886  6999885433           


Q ss_pred             ----CCHHHHHHHHh
Q psy2386         196 ----KTKKEIDLHLN  206 (311)
Q Consensus       196 ----~s~~da~~~l~  206 (311)
                          +|.+++.++++
T Consensus       152 r~qGk~~~~a~~l~~  166 (261)
T PF02548_consen  152 RVQGKTAEEAEKLLE  166 (261)
T ss_dssp             --CSTSHHHHHHHHH
T ss_pred             eEEecCHHHHHHHHH
Confidence                36777777664

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=93.85  E-value=0.32  Score=46.15  Aligned_cols=108  Identities=12%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          45 EHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        45 ~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      +.|+.+-|.       |.+++++.+.++.+++.|+|.|++..|...+... ..+.+.   +    .+..+.+++.+++||
T Consensus       207 ~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~-~~~~~~---~----~~~~~~ik~~~~ipV  278 (337)
T PRK13523        207 DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARI-DVYPGY---Q----VPFAEHIREHANIAT  278 (337)
T ss_pred             CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCC-CCCccc---c----HHHHHHHHhhcCCcE
Confidence            568888877       5678999999999999999999999886322111 111111   2    234567777788998


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      .+-=++  ..       .+.+..+.+.| +|.|-+ ||-..              +|-+++.++++.+
T Consensus       279 i~~G~i--~~-------~~~a~~~l~~g~~D~V~~-gR~~i--------------adP~~~~k~~~~~  322 (337)
T PRK13523        279 GAVGLI--TS-------GAQAEEILQNNRADLIFI-GRELL--------------RNPYFPRIAAKEL  322 (337)
T ss_pred             EEeCCC--CC-------HHHHHHHHHcCCCChHHh-hHHHH--------------hCccHHHHHHHHc
Confidence            764332  11       24455555555 888755 55321              3445677777654

>KOG2550|consensus

Probab=93.78  E-value=0.57  Score=45.16  Aligned_cols=69  Identities=22%  Similarity=0.421  Sum_probs=53.6

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+-...+.++|+|.|++..    .+|.|        ..-.+.|+.+++.+|++.||+ |+|-|.++++.++.. +||+=|
T Consensus       253 K~rl~ll~~aGvdvviLDS----SqGnS--------~~qiemik~iK~~yP~l~Via-GNVVT~~qa~nLI~aGaDgLrV  319 (503)
T KOG2550|consen  253 KERLDLLVQAGVDVVILDS----SQGNS--------IYQLEMIKYIKETYPDLQIIA-GNVVTKEQAANLIAAGADGLRV  319 (503)
T ss_pred             hHHHHHhhhcCCcEEEEec----CCCcc--------hhHHHHHHHHHhhCCCceeec-cceeeHHHHHHHHHccCceeEe
Confidence            3556778999999999863    34443        135689999999999888775 888899999999987 998777


Q ss_pred             ehh
Q psy2386         214 GRE  216 (311)
Q Consensus       214 gRa  216 (311)
                      |-|
T Consensus       320 GMG  322 (503)
T KOG2550|consen  320 GMG  322 (503)
T ss_pred             ccc
Confidence            543

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=93.78  E-value=1.6  Score=38.65  Aligned_cols=142  Identities=15%  Similarity=0.171  Sum_probs=84.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.++.+-|--.|+..+..-+  +.++|+|.+-+|..+                .++-+.+.++++++. +.-+.|-+-..
T Consensus        56 ~~~v~~DLK~~Di~~~v~~~--~~~~Gad~vTvH~~a----------------~~~~i~~~~~~~~~~-g~~~~V~llts  116 (216)
T PRK13306         56 DKIIVADTKIADAGKILAKM--AFEAGADWVTVICAA----------------HIPTIKAALKVAKEF-NGEIQIELYGN  116 (216)
T ss_pred             CCEEEEEEeecCCcHHHHHH--HHHCCCCEEEEeCCC----------------CHHHHHHHHHHHHHc-CCEEEEEECCC
Confidence            56899999999988776534  668899999999432                234466666666643 44444444443


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      ++.        +-++.+.+.|++.+.+| +....   +.|..   -.+...+.++++++.  +..+...|||+- +.+..
T Consensus       117 ~~~--------~~l~~~~~~~~~~~vl~~a~~~~---~~G~v---~s~~~~~~ir~~~~~--~~~i~V~gGI~~-~~~~~  179 (216)
T PRK13306        117 WTW--------EQAQQWRDAGISQVIYHRSRDAQ---LAGVA---WGEKDLNKVKKLSDM--GFKVSVTGGLVV-EDLKL  179 (216)
T ss_pred             CCH--------HHHHHHHcCChhhhhhhhhhhhh---hcCCC---CCHHHHHHHHHHhcC--CCeEEEcCCCCH-hhHHH
Confidence            321        22345566777666665 33321   22210   011234556666542  455889999984 33323


Q ss_pred             HHhh-cCEEEEehhhhhCCc
Q psy2386         204 HLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~  222 (311)
                      ..+. +|.+++||+++..+.
T Consensus       180 ~~~~~ad~~VvGr~I~~a~d  199 (216)
T PRK13306        180 FKGIPVKTFIAGRAIRGAAD  199 (216)
T ss_pred             HhcCCCCEEEECCcccCCCC
Confidence            3333 999999999876555

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=93.77  E-value=0.92  Score=43.85  Aligned_cols=43  Identities=23%  Similarity=0.413  Sum_probs=37.9

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +..+|+.++++++.. ++||+.- ||.|.+|+..+.+. ||+|.|.
T Consensus       238 ~~~tW~~i~~lr~~~-~~pvivK-gV~~~~dA~~a~~~G~d~I~vs  281 (383)
T cd03332         238 PSLTWEDLAFLREWT-DLPIVLK-GILHPDDARRAVEAGVDGVVVS  281 (383)
T ss_pred             CCCCHHHHHHHHHhc-CCCEEEe-cCCCHHHHHHHHHCCCCEEEEc
Confidence            457899999999998 7998876 78999999999987 9999984

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=93.67  E-value=4  Score=37.06  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~  125 (311)
                      .+++-|.|.+++++.+.++.+...|+|.||+=+=         -+..  +.+.+.+.+++..+++.. ++|+.+=+|.-+
T Consensus        17 ~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD---------~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~   85 (253)
T PRK02412         17 KIIVPIMGKTLEEVLAEALAISKYDADIIEWRAD---------FLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAK   85 (253)
T ss_pred             EEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEec---------hhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence            4789999999999999888888889999999532         1111  124566777777887765 689999889755


Q ss_pred             CCC---CcHHHHHHHHHHHHHcC-CCEEEEec
Q psy2386         126 DDI---NSYDFVRDFVGTVSSAG-CRTFIVHA  153 (311)
Q Consensus       126 ~~~---~~~~~~~e~~~~l~~~G-~~~itvh~  153 (311)
                      +.+   .+.++..++.+.+.+.| +++|.|--
T Consensus        86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl  117 (253)
T PRK02412         86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVEL  117 (253)
T ss_pred             hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence            322   12234567788888888 89998853

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=93.65  E-value=0.45  Score=43.47  Aligned_cols=91  Identities=13%  Similarity=0.132  Sum_probs=65.8

Q ss_pred             ccee--EEEEe---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386         114 EIDI--TVKHR---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE  188 (311)
Q Consensus       114 ~~pv--svKiR---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip  188 (311)
                      ++||  .+|.+   .||-....  +..++++.+++.|+++|.|..-...++|            +++.+..+++.+ ++|
T Consensus        49 ~~~vIaeik~~sps~g~i~~~~--~~~~~A~~~~~~GA~aisvlte~~~f~g------------~~~~l~~v~~~v-~iP  113 (260)
T PRK00278         49 KPAVIAEVKKASPSKGVIREDF--DPVEIAKAYEAGGAACLSVLTDERFFQG------------SLEYLRAARAAV-SLP  113 (260)
T ss_pred             CCeEEEEeeCCCCCCCccCCCC--CHHHHHHHHHhCCCeEEEEecccccCCC------------CHHHHHHHHHhc-CCC
Confidence            4666  45643   24422221  3579999999999999988755432232            688999999988 899


Q ss_pred             EEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         189 IIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       189 vi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      |+.--=|.++-++.+..+. ||+|.+.=..+.
T Consensus       114 vl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~  145 (260)
T PRK00278        114 VLRKDFIIDPYQIYEARAAGADAILLIVAALD  145 (260)
T ss_pred             EEeeeecCCHHHHHHHHHcCCCEEEEEeccCC
Confidence            9986667778888888776 999999766654

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=93.63  E-value=4.2  Score=35.96  Aligned_cols=142  Identities=13%  Similarity=0.146  Sum_probs=83.3

Q ss_pred             CCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .++++=+--.| |+....+++.+.+.|+|.+-+|....                ++-+...++..++.- ++=+-+.+. 
T Consensus        50 ~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G----------------~~~l~~~~~~~~~~~~~~~~v~~ls-  112 (216)
T cd04725          50 FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGG----------------SDMLKAALEAAEEKGKGLFAVTVLS-  112 (216)
T ss_pred             CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCC----------------HHHHHHHHHHHhccCCeEEEEEcCC-
Confidence            67888777666 45666667777788999999993322                344555555554321 112223333 


Q ss_pred             cCCCC--------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         124 GIDDI--------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       124 g~~~~--------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      .++..        ...+....+++...+.|++.+.+.+..                  .+.+++..  .++.+ +..+||
T Consensus       113 s~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~------------------~~~i~~~~--~~~~~-~ltPGI  171 (216)
T cd04725         113 SPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE------------------PEALRRAL--GPDFL-ILTPGI  171 (216)
T ss_pred             CCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc------------------hHHHHHhh--CCCCe-EEcCCc
Confidence            22211        111235577888889998888776553                  23343322  23555 677777


Q ss_pred             CCH---------HHHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         196 KTK---------KEIDLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       196 ~s~---------~da~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      .-.         .+..+.+.. ++++.+||+++..+.-..
T Consensus       172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~  211 (216)
T cd04725         172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVA  211 (216)
T ss_pred             CCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHH
Confidence            732         133344444 999999999988776433

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=93.62  E-value=2.2  Score=38.68  Aligned_cols=85  Identities=18%  Similarity=0.129  Sum_probs=50.5

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc---CC-C
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG---ID-D  127 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g---~~-~  127 (311)
                      ++..++++    |..+++.|+|-|||+-+=..         +.|--.+.+    ++.+++.+++||.|=||+-   +. +
T Consensus         6 vcv~s~~~----a~~A~~~GAdRiELc~~L~~---------GGlTPS~g~----i~~~~~~~~ipv~vMIRPR~gdF~Ys   68 (248)
T PRK11572          6 ICCYSMEC----ALTAQQAGADRIELCAAPKE---------GGLTPSLGV----LKSVRERVTIPVHPIIRPRGGDFCYS   68 (248)
T ss_pred             EEECCHHH----HHHHHHcCCCEEEEccCcCC---------CCcCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCCC
Confidence            44455554    34566889999999743211         112222333    4455556789998888863   11 1


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEec
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~  153 (311)
                      +.+.+...+=++.+.+.|++.+.+-.
T Consensus        69 ~~E~~~M~~di~~~~~~GadGvV~G~   94 (248)
T PRK11572         69 DGEFAAMLEDIATVRELGFPGLVTGV   94 (248)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEee
Confidence            22334445557778899999998743

>PRK14057 epimerase; Provisional

Probab=93.61  E-value=2.6  Score=38.36  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=87.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc---------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI---------  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~---------  115 (311)
                      ..|+=+.|+-.+|+.+.   +...++|+|.|-+|.=..                 ..+.++++.+|+. +.         
T Consensus        75 ~~p~DvHLMV~~P~~~i---~~~~~aGad~It~H~Ea~-----------------~~~~~~l~~Ir~~-G~k~~~~~~~~  133 (254)
T PRK14057         75 TFIKDVHLMVADQWTAA---QACVKAGAHCITLQAEGD-----------------IHLHHTLSWLGQQ-TVPVIGGEMPV  133 (254)
T ss_pred             CCCeeEEeeeCCHHHHH---HHHHHhCCCEEEEeeccc-----------------cCHHHHHHHHHHc-CCCcccccccc
Confidence            57888999999999986   455678999999995421                 1245667777775 43         


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEE
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELEIII  191 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~  191 (311)
                      ...+-+.++    .+    .+.+..+.+. +|.|.+-.-.   .|+.|..  .. +.-++-|+++++..    .++.|-.
T Consensus       134 kaGlAlnP~----Tp----~e~i~~~l~~-vD~VLvMtV~---PGfgGQ~--Fi-~~~l~KI~~lr~~~~~~~~~~~IeV  198 (254)
T PRK14057        134 IRGISLCPA----TP----LDVIIPILSD-VEVIQLLAVN---PGYGSKM--RS-SDLHERVAQLLCLLGDKREGKIIVI  198 (254)
T ss_pred             eeEEEECCC----CC----HHHHHHHHHh-CCEEEEEEEC---CCCCchh--cc-HHHHHHHHHHHHHHHhcCCCceEEE
Confidence            244444443    12    2334444443 8888764332   2343321  11 11344555555432    1366788


Q ss_pred             ecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         192 NGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       192 nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      =|||+. +.+.++.+. ||.+.+|++++.++.
T Consensus       199 DGGI~~-~ti~~l~~aGad~~V~GSalF~~~d  229 (254)
T PRK14057        199 DGSLTQ-DQLPSLIAQGIDRVVSGSALFRDDR  229 (254)
T ss_pred             ECCCCH-HHHHHHHHCCCCEEEEChHhhCCCC
Confidence            899974 677777776 999999999876554

>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional

Probab=93.60  E-value=0.99  Score=42.48  Aligned_cols=117  Identities=15%  Similarity=0.187  Sum_probs=65.5

Q ss_pred             CeEEEecCCCHHH-----------H----HHHHHHH-HHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh
Q psy2386          47 PIAFQVGDNEPKK-----------L----AKSAKII-QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR  110 (311)
Q Consensus        47 p~~~Ql~g~~~~~-----------~----~~aa~~~-~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~  110 (311)
                      .+.+.|+-.-++.           +    ++-|+.+ +++|+|.|+||+-...+.. +       -+.++.+.++++.|.
T Consensus        49 ~ia~~v~D~~~~~~~~~i~~~~~~v~~~p~~~Ak~q~~~~GAd~Idl~~~s~dp~~-~-------d~~~~e~~~~Vk~V~  120 (319)
T PRK04452         49 VIAMEVFDMPPEDWPEAVKEPFGDVMNDPAAWAKKCVEEYGADMITLHLISTDPNG-K-------DKSPEEAAKTVEEVL  120 (319)
T ss_pred             eEEEEEecCCCcccHHHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEECCCCCccc-c-------cchHHHHHHHHHHHH
Confidence            3778887654422           2    2333444 4899999999953322210 0       123566888999998


Q ss_pred             ccccceeEEEEeccCCCCCcHHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         111 DSVEIDITVKHRIGIDDINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       111 ~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      +++++|+.|-..-..+. +     .+.++. ++..+=....+.+-+.               -+|+.+..+++.. +.||
T Consensus       121 eavd~PL~Id~s~n~~k-D-----~evleaale~~~g~~pLInSat~---------------en~~~i~~lA~~y-~~~V  178 (319)
T PRK04452        121 QAVDVPLIIGGSGNPEK-D-----AEVLEKVAEAAEGERCLLGSAEE---------------DNYKKIAAAAMAY-GHAV  178 (319)
T ss_pred             HhCCCCEEEecCCCCCC-C-----HHHHHHHHHHhCCCCCEEEECCH---------------HHHHHHHHHHHHh-CCeE
Confidence            88999998643321111 1     122222 2322212122322221               2678888888887 7888


Q ss_pred             EEec
Q psy2386         190 IING  193 (311)
Q Consensus       190 i~nG  193 (311)
                      ++-.
T Consensus       179 va~s  182 (319)
T PRK04452        179 IAWS  182 (319)
T ss_pred             EEEc
Confidence            8775

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=93.60  E-value=1.6  Score=42.16  Aligned_cols=134  Identities=12%  Similarity=0.198  Sum_probs=87.0

Q ss_pred             EecCCC--HHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          51 QVGDNE--PKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        51 Ql~g~~--~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      +|.|..  +++ ...-++.+.+.|.|.+-|=               --|+|++-+..-++++++. +.-+-.-+.-....
T Consensus        88 NlvGYrhyaDDvVe~Fv~ka~~nGidvfRiF---------------DAlND~RNl~~ai~a~kk~-G~h~q~~i~YT~sP  151 (472)
T COG5016          88 NLVGYRHYADDVVEKFVEKAAENGIDVFRIF---------------DALNDVRNLKTAIKAAKKH-GAHVQGTISYTTSP  151 (472)
T ss_pred             ccccccCCchHHHHHHHHHHHhcCCcEEEec---------------hhccchhHHHHHHHHHHhc-CceeEEEEEeccCC
Confidence            344543  344 3344566778888888773               1368999999999998885 43333333333334


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----cCCCCHHHHHH
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----GGIKTKKEIDL  203 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----GgI~s~~da~~  203 (311)
                      ..+.+..+++++.+++.|+|.|++-.-.    |..      .|..-++.|+.+|+.+ .+||..-    -|+.+..-...
T Consensus       152 vHt~e~yv~~akel~~~g~DSIciKDma----Gll------tP~~ayelVk~iK~~~-~~pv~lHtH~TsG~a~m~ylkA  220 (472)
T COG5016         152 VHTLEYYVELAKELLEMGVDSICIKDMA----GLL------TPYEAYELVKAIKKEL-PVPVELHTHATSGMAEMTYLKA  220 (472)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEeeccc----ccC------ChHHHHHHHHHHHHhc-CCeeEEecccccchHHHHHHHH
Confidence            4556678999999999999999986443    221      1235789999999999 6998654    45555444444


Q ss_pred             HHhhcCEE
Q psy2386         204 HLNYIDGV  211 (311)
Q Consensus       204 ~l~~adgV  211 (311)
                      +-+++|++
T Consensus       221 vEAGvD~i  228 (472)
T COG5016         221 VEAGVDGI  228 (472)
T ss_pred             HHhCcchh
Confidence            43446654

>cd00740 MeTr MeTr subgroup of pterin binding enzymes

Probab=93.55  E-value=0.43  Score=43.42  Aligned_cols=72  Identities=7%  Similarity=0.021  Sum_probs=47.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .|++...+-|+...+.|+|.||||++ |.           .....+.+.+++..+++.+++|++|...-           
T Consensus        23 ~~~d~~~~~A~~~~~~GAdiIDIG~~-~~-----------~~~~~ee~~r~v~~i~~~~~~piSIDT~~-----------   79 (252)
T cd00740          23 EDYDEALDVARQQVEGGAQILDLNVD-YG-----------GLDGVSAMKWLLNLLATEPTVPLMLDSTN-----------   79 (252)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCC-CC-----------CCCHHHHHHHHHHHHHHhcCCcEEeeCCc-----------
Confidence            66777777777777789999999975 21           12345667777777877778998885331           


Q ss_pred             HHHHHHHHHc--CCCEE
Q psy2386         135 RDFVGTVSSA--GCRTF  149 (311)
Q Consensus       135 ~e~~~~l~~~--G~~~i  149 (311)
                      .+.++...+.  |++.|
T Consensus        80 ~~v~e~aL~~~~G~~iI   96 (252)
T cd00740          80 WEVIEAGLKCCQGKCVV   96 (252)
T ss_pred             HHHHHHHHhhCCCCcEE
Confidence            2344444544  77765

This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=93.52  E-value=3.6  Score=42.13  Aligned_cols=214  Identities=12%  Similarity=0.147  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      ...-++.+.+.|+|.|-|=..+               ++.+.+...++.+++. +.-+.+-+........+.+...++++
T Consensus        98 v~~~v~~A~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~~~~~~~a~  161 (592)
T PRK09282         98 VEKFVEKAAENGIDIFRIFDAL---------------NDVRNMEVAIKAAKKA-GAHVQGTISYTTSPVHTIEKYVELAK  161 (592)
T ss_pred             hHHHHHHHHHCCCCEEEEEEec---------------ChHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHHHHHH
Confidence            3344566678899987764222               3445666667777664 44444333221222233557889999


Q ss_pred             HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----cCCCCHHHHHHHHhhcCEEEE--
Q psy2386         140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----GGIKTKKEIDLHLNYIDGVML--  213 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----GgI~s~~da~~~l~~adgVmi--  213 (311)
                      .+.++|++.|.+-...+   ...       |..-.++++.+++.+ ++||-.-    .|.....-...+-.+||.|-.  
T Consensus       162 ~l~~~Gad~I~i~Dt~G---~~~-------P~~~~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai  230 (592)
T PRK09282        162 ELEEMGCDSICIKDMAG---LLT-------PYAAYELVKALKEEV-DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAI  230 (592)
T ss_pred             HHHHcCCCEEEECCcCC---CcC-------HHHHHHHHHHHHHhC-CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeec
Confidence            99999999998864322   111       112357888999888 5887553    333333333333333554432  


Q ss_pred             ---ehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--HHH
Q psy2386         214 ---GREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS--NKF  286 (311)
Q Consensus       214 ---gRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~--~~~  286 (311)
                         |.+. +||.+-.-+. .|...+. ....+. +.+..+.+|+..... |... ........  .-|.+.+||.  +.+
T Consensus       231 ~g~g~~a-gn~~~e~vv~-~L~~~g~-~~~idl-~~l~~~s~~~~~~~~~y~~~~~~~~~~~~--~v~~~~~pGg~~snl  304 (592)
T PRK09282        231 SPLAFGT-SQPPTESMVA-ALKGTPY-DTGLDL-ELLFEIAEYFREVRKKYKQFESEFTIVDT--RVLIHQVPGGMISNL  304 (592)
T ss_pred             cccCCCc-CCHhHHHHHH-HHHhCCC-CCccCH-HHHHHHHHHHHHHHHHhhcCCCccccCCc--cEEEEcCCCcHHHHH
Confidence               3433 5777554332 2222211 122332 445555566555443 3210 01111111  1245789999  889


Q ss_pred             HHHHhCCCCCCCChHHHHHHh
Q psy2386         287 KQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       287 r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      +..+.+..-.. ...++|+++
T Consensus       305 ~~q~~~~g~~d-~~~~vl~e~  324 (592)
T PRK09282        305 VSQLKEQNALD-KLDEVLEEI  324 (592)
T ss_pred             HHHHHHCCcHH-HHHHHHHHH
Confidence            99998887754 667777664

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.49  E-value=1.3  Score=39.49  Aligned_cols=117  Identities=14%  Similarity=0.138  Sum_probs=75.8

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH-
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK-  182 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~-  182 (311)
                      ++++.+.+.   ++..=+|..     +.++..++++.+.+.|+..+-|.-||.               ...+.|+++++ 
T Consensus         7 ~~~~~l~~~---~vi~Vvr~~-----~~~~a~~~~~al~~gGi~~iEiT~~tp---------------~a~~~i~~l~~~   63 (222)
T PRK07114          7 AVLTAMKAT---GMVPVFYHA-----DVEVAKKVIKACYDGGARVFEFTNRGD---------------FAHEVFAELVKY   63 (222)
T ss_pred             HHHHHHHhC---CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCC---------------cHHHHHHHHHHH
Confidence            344444443   444446742     133678999999999999999988873               24566777653 


Q ss_pred             ---hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         183 ---DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       183 ---~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                         ..|+ -++|.|-|.|++++++.++. ++.++.=   --||.+.+...+.  +-...+-..|+.|+...
T Consensus        64 ~~~~~p~-~~vGaGTVl~~e~a~~a~~aGA~FiVsP---~~~~~v~~~~~~~--~i~~iPG~~TpsEi~~A  128 (222)
T PRK07114         64 AAKELPG-MILGVGSIVDAATAALYIQLGANFIVTP---LFNPDIAKVCNRR--KVPYSPGCGSLSEIGYA  128 (222)
T ss_pred             HHhhCCC-eEEeeEeCcCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHc--CCCEeCCCCCHHHHHHH
Confidence               3443 37999999999999999986 9887752   1456666554432  11111234677776654

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=93.47  E-value=2.4  Score=36.91  Aligned_cols=122  Identities=14%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             EEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCC
Q psy2386          50 FQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDD  127 (311)
Q Consensus        50 ~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~  127 (311)
                      ++|+|-. +++.    +.+.+.|+|.|-+-+--+++.          .-+++.+.++.+.+.... .++|.+.-+     
T Consensus         1 vKiCGi~~~ed~----~~a~~~Gvd~ig~i~~~~s~R----------~v~~~~a~~l~~~~~~~~~~V~v~vn~~-----   61 (203)
T cd00405           1 VKICGITTLEDA----LAAAEAGADAIGFIFAPKSPR----------YVSPEQAREIVAALPPFVKRVGVFVNED-----   61 (203)
T ss_pred             CEECCCCCHHHH----HHHHHcCCCEEEEecCCCCCC----------CCCHHHHHHHHHhCCCCCcEEEEEeCCC-----
Confidence            3566643 4433    444578999999975444332          124677777777665521 344433111     


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH--
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL--  205 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l--  205 (311)
                            ..++.+.+.+.|+|.|++|+..                 +.+.+.++++.+ ..+++-.=++.+..+.....  
T Consensus        62 ------~~~i~~ia~~~~~d~Vqlhg~e-----------------~~~~~~~l~~~~-~~~~i~~i~~~~~~~~~~~~~~  117 (203)
T cd00405          62 ------LEEILEIAEELGLDVVQLHGDE-----------------SPEYCAQLRARL-GLPVIKAIRVKDEEDLEKAAAY  117 (203)
T ss_pred             ------HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCcEEEEEecCChhhHHHhhhc
Confidence                  2455666788999999999763                 235677777765 45555333455555543222  


Q ss_pred             hh-cCEEEEe
Q psy2386         206 NY-IDGVMLG  214 (311)
Q Consensus       206 ~~-adgVmig  214 (311)
                      .. +|.+++-
T Consensus       118 ~~~aD~il~d  127 (203)
T cd00405         118 AGEVDAILLD  127 (203)
T ss_pred             cccCCEEEEc
Confidence            22 8988763

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=93.47  E-value=1  Score=40.25  Aligned_cols=141  Identities=12%  Similarity=0.155  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCCCEEEeccC--------------------------------------------C--Ccccc-ccCcc
Q psy2386          59 KLAKSAKIIQKWGYDEINLNCG--------------------------------------------C--PSNRV-QNGFF   91 (311)
Q Consensus        59 ~~~~aa~~~~~~g~d~IdiN~g--------------------------------------------C--P~~~v-~~~~~   91 (311)
                      +..+||.+++++|+|+|-+|.=                                            |  |-... .+...
T Consensus        22 dpv~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~E~TTeg  101 (234)
T cd00003          22 DPVEAALLAEKAGADGITVHLREDRRHIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKREELTTEG  101 (234)
T ss_pred             CHHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCCCccCCc
Confidence            3667888999999999988731                                            2  32222 24455


Q ss_pred             cCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386          92 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI  171 (311)
Q Consensus        92 G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~  171 (311)
                      |--+..+.+.+.++++.+++. ++.||+-+-+     +     .+-++...+.|++.|-+|.... ...+..       .
T Consensus       102 Gldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP-----d-----~~qi~~A~~~GAd~VELhTG~Y-a~a~~~-------~  162 (234)
T cd00003         102 GLDVAGQAEKLKPIIERLKDA-GIRVSLFIDP-----D-----PEQIEAAKEVGADRVELHTGPY-ANAYDK-------A  162 (234)
T ss_pred             cchhhcCHHHHHHHHHHHHHC-CCEEEEEeCC-----C-----HHHHHHHHHhCcCEEEEechhh-hcCCCc-------h
Confidence            777888999999999999985 8888886543     1     3456777999999999995531 111110       0


Q ss_pred             CcHHHHHHH------HHhCCCCeEEEecCCCCHHHHHHHHh--hcCEEEEehhhhhC
Q psy2386         172 LKYNFVYNL------KKDFPELEIIINGGIKTKKEIDLHLN--YIDGVMLGREAYKN  220 (311)
Q Consensus       172 ~~~~~i~~i------~~~~~~ipvi~nGgI~s~~da~~~l~--~adgVmigRa~l~~  220 (311)
                      .....+.++      +... .+-|-+.-|+ +++.+..+..  ...=|-||.+++.+
T Consensus       163 ~~~~el~~i~~aa~~a~~~-GL~VnAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia~  217 (234)
T cd00003         163 EREAELERIAKAAKLAREL-GLGVNAGHGL-NYENVKPIAKIPGIAELNIGHAIISR  217 (234)
T ss_pred             hHHHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHHHHHHHhCCCCeEEccCHHHHHH
Confidence            111123333      2233 4555555555 4566655543  37788888877553

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=93.46  E-value=0.97  Score=43.41  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=36.5

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +..+|+.++.+++.. ++|||.= ||.+++|+..+.+. ||+|.|+
T Consensus       209 ~~~tW~di~wlr~~~-~~PiivK-gV~~~~dA~~a~~~Gvd~I~Vs  252 (367)
T PLN02493        209 RTLSWKDVQWLQTIT-KLPILVK-GVLTGEDARIAIQAGAAGIIVS  252 (367)
T ss_pred             CCCCHHHHHHHHhcc-CCCEEee-cCCCHHHHHHHHHcCCCEEEEC
Confidence            457899999999987 7997764 56789999999987 9999983

>PRK01060 endonuclease IV; Provisional

Probab=93.36  E-value=0.9  Score=41.44  Aligned_cols=133  Identities=14%  Similarity=0.161  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce---eEEEE----eccCCCCC---
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID---ITVKH----RIGIDDIN---  129 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p---vsvKi----R~g~~~~~---  129 (311)
                      +.++.+.+.+.|||+|||.+++|......     .  .+++.+.++-+.+.+. ++.   +++-.    ++...+..   
T Consensus        14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~-----~--~~~~~~~~lk~~~~~~-gl~~~~~~~h~~~~~nl~~~d~~~r~   85 (281)
T PRK01060         14 LEGAVAEAAEIGANAFMIFTGNPQQWKRK-----P--LEELNIEAFKAACEKY-GISPEDILVHAPYLINLGNPNKEILE   85 (281)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCcCC-----C--CCHHHHHHHHHHHHHc-CCCCCceEEecceEecCCCCCHHHHH
Confidence            78889999999999999999998653211     1  2566666666555443 443   44422    22211111   


Q ss_pred             -cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH----HHHHHHHhCCCCeEEEe---c----CCCC
Q psy2386         130 -SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN----FVYNLKKDFPELEIIIN---G----GIKT  197 (311)
Q Consensus       130 -~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~----~i~~i~~~~~~ipvi~n---G----gI~s  197 (311)
                       ..+.+...++.+.+.|+..|++|+... ....       .....|+    .+.++.+....+.+..-   +    -+.+
T Consensus        86 ~s~~~~~~~i~~A~~lga~~vv~h~G~~-~~~~-------~~~~~~~~~~e~l~~l~~~~~gv~l~iEn~~~~~~~~~~~  157 (281)
T PRK01060         86 KSRDFLIQEIERCAALGAKLLVFHPGSH-LGDI-------DEEDCLARIAESLNEALDKTQGVTIVLENTAGQGSELGRR  157 (281)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEcCCcC-CCCC-------cHHHHHHHHHHHHHHHHhcCCCCEEEEecCCCCCCcccCC
Confidence             123455666777789999999996532 1110       0001343    23333222224554432   1    1358


Q ss_pred             HHHHHHHHhhc
Q psy2386         198 KKEIDLHLNYI  208 (311)
Q Consensus       198 ~~da~~~l~~a  208 (311)
                      ++++.++++.+
T Consensus       158 ~~~~~~l~~~v  168 (281)
T PRK01060        158 FEELARIIDGV  168 (281)
T ss_pred             HHHHHHHHHhc
Confidence            89999888764

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=93.36  E-value=3.7  Score=35.67  Aligned_cols=127  Identities=13%  Similarity=0.034  Sum_probs=76.8

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-ccee--EEEEecc
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDI--TVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pv--svKiR~g  124 (311)
                      +++-|=..++++..+.++.+ +-|++.||+....-                ...-.++++.+++.. +..+  .+|+.  
T Consensus         2 l~~alD~~~~~~a~~~~~~l-~~~v~~iev~~~l~----------------~~~g~~~i~~l~~~~~~~~i~~d~k~~--   62 (206)
T TIGR03128         2 LQLALDLLDIEEALELAEKV-ADYVDIIEIGTPLI----------------KNEGIEAVKEMKEAFPDRKVLADLKTM--   62 (206)
T ss_pred             eEEEecCCCHHHHHHHHHHc-ccCeeEEEeCCHHH----------------HHhCHHHHHHHHHHCCCCEEEEEEeec--
Confidence            44555577888888888888 67899999941111                111235566665543 3333  34433  


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEe-cCCCC-HHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIIN-GGIKT-KKEI  201 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~n-GgI~s-~~da  201 (311)
                       +.+      ...++.+.++|+|+|++|+-+.              +.. .+.+..+++ . +++++.. =+..+ .+++
T Consensus        63 -d~~------~~~~~~~~~~Gad~i~vh~~~~--------------~~~~~~~i~~~~~-~-g~~~~~~~~~~~t~~~~~  119 (206)
T TIGR03128        63 -DAG------EYEAEQAFAAGADIVTVLGVAD--------------DATIKGAVKAAKK-H-GKEVQVDLINVKDKVKRA  119 (206)
T ss_pred             -cch------HHHHHHHHHcCCCEEEEeccCC--------------HHHHHHHHHHHHH-c-CCEEEEEecCCCChHHHH
Confidence             211      1237888999999999997542              011 244555554 4 6888754 24444 4777


Q ss_pred             HHHHhh-cCEEEEehh
Q psy2386         202 DLHLNY-IDGVMLGRE  216 (311)
Q Consensus       202 ~~~l~~-adgVmigRa  216 (311)
                      ..+.+. +|.|.+..+
T Consensus       120 ~~~~~~g~d~v~~~pg  135 (206)
T TIGR03128       120 KELKELGADYIGVHTG  135 (206)
T ss_pred             HHHHHcCCCEEEEcCC
Confidence            777774 999987544

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>KOG2550|consensus

Probab=93.26  E-value=0.17  Score=48.57  Aligned_cols=78  Identities=18%  Similarity=0.270  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCCEEEEecCcc---ccc--cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNA---FLK--KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~---~~~--G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      .+-++.|-++|+|.+.|--...   ..+  .-+|.++   ..+-++ +.+.+..+ .+|||+-|||.++-++.+.+.. |
T Consensus       303 ~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ---~TAVy~-va~~A~q~-gvpviADGGiq~~Ghi~KAl~lGA  377 (503)
T KOG2550|consen  303 KEQAANLIAAGADGLRVGMGSGSICITQKVMACGRPQ---GTAVYK-VAEFANQF-GVPCIADGGIQNVGHVVKALGLGA  377 (503)
T ss_pred             HHHHHHHHHccCceeEeccccCceeeeceeeeccCCc---ccchhh-HHHHHHhc-CCceeecCCcCccchhHhhhhcCc
Confidence            4667888899999998742211   111  1112211   223344 55666667 7999999999999999999987 9


Q ss_pred             CEEEEehhh
Q psy2386         209 DGVMLGREA  217 (311)
Q Consensus       209 dgVmigRa~  217 (311)
                      +.||+|.=+
T Consensus       378 stVMmG~lL  386 (503)
T KOG2550|consen  378 STVMMGGLL  386 (503)
T ss_pred             hhheeccee
Confidence            999999543

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=93.24  E-value=6.1  Score=36.36  Aligned_cols=151  Identities=15%  Similarity=0.116  Sum_probs=93.6

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++++++++.++..+-|+.+++.|+|+|-+-.  |..          .-..++.+.+-.+.+.+++++||.+=-
T Consensus        64 ~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p--P~y----------~~~~~~~i~~~~~~i~~~~~~pi~lYn  131 (285)
T TIGR00674        64 VNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT--PYY----------NKPTQEGLYQHFKAIAEEVDLPIILYN  131 (285)
T ss_pred             hCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC--CcC----------CCCCHHHHHHHHHHHHhcCCCCEEEEE
Confidence            34568999999999999999999999999999999852  332          112457777778888888889987643


Q ss_pred             e---ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCC
Q psy2386         122 R---IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKT  197 (311)
Q Consensus       122 R---~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s  197 (311)
                      -   .|.+-      ..++.++|.+.+ ..+   |-.-  .           ..|+..+.++.+..+ ++.|+...|   
T Consensus       132 ~P~~tg~~l------~~~~l~~L~~~~-~v~---giK~--s-----------~~d~~~~~~l~~~~~~~~~v~~G~d---  185 (285)
T TIGR00674       132 VPSRTGVSL------YPETVKRLAEEP-NIV---AIKE--A-----------TGNLERISEIKAIAPDDFVVLSGDD---  185 (285)
T ss_pred             CcHHhcCCC------CHHHHHHHHcCC-CEE---EEEe--C-----------CCCHHHHHHHHHhcCCCeEEEECch---
Confidence            2   23222      245666666543 211   1110  0           025666777766654 355444333   


Q ss_pred             HHHHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         198 KKEIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       198 ~~da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                       ......+. ++||.+.|-+.+- |.++.++-+.+.
T Consensus       186 -~~~~~~~~~G~~G~i~~~~~~~-P~~~~~l~~a~~  219 (285)
T TIGR00674       186 -ALTLPMMALGGKGVISVTANVA-PKLMKEMVNNAL  219 (285)
T ss_pred             -HHHHHHHHcCCCEEEehHHHhh-HHHHHHHHHHHH
Confidence             22233343 3999998877633 456666655443

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=93.20  E-value=0.55  Score=40.65  Aligned_cols=89  Identities=16%  Similarity=0.198  Sum_probs=65.3

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      |+..=+|.- +    .++..++++.+.+.|++.|.+.-++.               ...+.++++++.+| -..++.|.|
T Consensus         5 ~~~~i~r~~-~----~~~~~~~~~~l~~~G~~~vev~~~~~---------------~~~~~i~~l~~~~~-~~~iGag~v   63 (190)
T cd00452           5 PLVAVLRGD-D----AEDALALAEALIEGGIRAIEITLRTP---------------GALEAIRALRKEFP-EALIGAGTV   63 (190)
T ss_pred             cEEEEEEcC-C----HHHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCC-CCEEEEEeC
Confidence            455556642 2    33578999999999999999986652               24568999998875 356899999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      .+.+++..+++. +|+|+.+-   .++.+.+..+
T Consensus        64 ~~~~~~~~a~~~Ga~~i~~p~---~~~~~~~~~~   94 (190)
T cd00452          64 LTPEQADAAIAAGAQFIVSPG---LDPEVVKAAN   94 (190)
T ss_pred             CCHHHHHHHHHcCCCEEEcCC---CCHHHHHHHH
Confidence            999999999986 99998763   3444444433

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase

Probab=93.20  E-value=3.8  Score=39.97  Aligned_cols=151  Identities=13%  Similarity=0.151  Sum_probs=88.3

Q ss_pred             CCCCCCeEEEecC---CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccce
Q psy2386          42 NAEEHPIAFQVGD---NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEID  116 (311)
Q Consensus        42 ~~~~~p~~~Ql~g---~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~p  116 (311)
                      .....|+-.|++-   .+|+.+..-++.+.+.| |..+.. .|=...         .+....+.+.+-++++++. .+..
T Consensus       161 ~~~~vp~~~s~g~~~~~~~d~m~~~a~~~~~~G~~~~~Kk-vG~~~~---------k~~~~~~~~~~ri~~lr~~g~~~~  230 (408)
T TIGR01502       161 ETNAVPVFAQSGDDRYDNVDKMILKEVDVLPHGLINSVEE-LGLDGE---------KLLEYVKWLRDRIIKLGREGYAPI  230 (408)
T ss_pred             cCCceeEEEEeeccCCCCHHHHHHHHHHHHhccCccceee-ecCCHH---------HhhhhHHHHHHHHHHhhccCCCCe
Confidence            3456788888752   46888877777777776 666554 333111         1122233344445555531 1334


Q ss_pred             eEEEEec------cCCCCCcHHHHHHHHHHHHHcCCC-EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----C
Q psy2386         117 ITVKHRI------GIDDINSYDFVRDFVGTVSSAGCR-TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----P  185 (311)
Q Consensus       117 vsvKiR~------g~~~~~~~~~~~e~~~~l~~~G~~-~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~  185 (311)
                      +.|-..-      +|+.    ++..++++.+++.... .+.+-.-..       .   ..+..+++..+++++.+    .
T Consensus       231 l~vDaN~~~~~~~~~~~----~~ai~~l~~l~~~~~~~~~~iEqPv~-------~---~d~~~~~e~la~Lr~~~~~~~~  296 (408)
T TIGR01502       231 FHIDVYGTIGEAFGVDI----KAMADYIQTLAEAAKPFHLRIEGPMD-------V---GSRQAQIEAMADLRAELDGRGV  296 (408)
T ss_pred             EEEEcCCCcccccCCCH----HHHHHHHHHHHHhCccCCeEEecCCC-------C---CcchhhHHHHHHHHHHhhcCCC
Confidence            4444432      4433    3567888888874221 122321110       0   00012488888888772    2


Q ss_pred             CCeEEEecCCCCHHHHHHHHhh--cCEEEEehh
Q psy2386         186 ELEIIINGGIKTKKEIDLHLNY--IDGVMLGRE  216 (311)
Q Consensus       186 ~ipvi~nGgI~s~~da~~~l~~--adgVmigRa  216 (311)
                      ++||++.=.+.|++|+.++++.  ||.|.+=-.
T Consensus       297 ~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~  329 (408)
T TIGR01502       297 DAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTP  329 (408)
T ss_pred             CceEEecCCCCCHHHHHHHHHhCCCCEEEeCcc
Confidence            7999999999999999999975  999998533

This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=93.19  E-value=0.32  Score=43.99  Aligned_cols=106  Identities=14%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC-----cHHH
Q psy2386          59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN-----SYDF  133 (311)
Q Consensus        59 ~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~-----~~~~  133 (311)
                      .+.+-.+.+.+.||+.|||+-|+=            =+ ..+.-.++++.+++.   -+.|+.-+|..+..     +.+.
T Consensus        85 ~~~~yl~~~k~lGf~~IEiSdGti------------~l-~~~~r~~~I~~~~~~---Gf~v~~EvG~K~~~~~~~~~~~~  148 (244)
T PF02679_consen   85 KFDEYLEECKELGFDAIEISDGTI------------DL-PEEERLRLIRKAKEE---GFKVLSEVGKKDPESDFSLDPEE  148 (244)
T ss_dssp             -HHHHHHHHHHCT-SEEEE--SSS----------------HHHHHHHHHHHCCT---TSEEEEEES-SSHHHHTT--CCH
T ss_pred             hHHHHHHHHHHcCCCEEEecCCce------------eC-CHHHHHHHHHHHHHC---CCEEeecccCCCchhcccCCHHH
Confidence            355556778899999999985542            12 233344555555543   35677777765432     1235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      .++.++...++||++|++-+|..-..|...    ..+..+.+.+.++.+.+
T Consensus       149 ~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~----~~g~~r~d~v~~i~~~~  195 (244)
T PF02679_consen  149 LIEQAKRDLEAGADKVIIEARESGKGGIYD----NDGEVRTDLVEKIIERL  195 (244)
T ss_dssp             HHHHHHHHHHHTECEEEE--TTT--STTB-----TTS-B-HHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCCEEEEeeeccCCCCccC----CCCCccHHHHHHHHHhC
Confidence            778888899999999999999532224221    12446778888888766

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=93.19  E-value=1.3  Score=39.66  Aligned_cols=140  Identities=14%  Similarity=0.180  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHcCCCEEEeccC--------------------------------------------C--Ccccc-ccCccc
Q psy2386          60 LAKSAKIIQKWGYDEINLNCG--------------------------------------------C--PSNRV-QNGFFG   92 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~g--------------------------------------------C--P~~~v-~~~~~G   92 (311)
                      ..+||.+++++|+|+|-+|.=                                            |  |-... .+...|
T Consensus        23 ~v~aA~~a~~aGAdgITvHlReDrRHI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ElTTegG  102 (237)
T TIGR00559        23 PLRAALIAEQAGADGITVHLREDRRHIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARDEVTTEGG  102 (237)
T ss_pred             HHHHHHHHHHcCCCEEEecCCCCcCcCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCccCCcC
Confidence            567888999999999988731                                            1  32222 244556


Q ss_pred             CcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC
Q psy2386          93 AILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL  172 (311)
Q Consensus        93 ~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~  172 (311)
                      =.+..+.+.+.++++.++++ ++.||+-+-+    +      .+-++...+.|++.|-+|.... ...++..       .
T Consensus       103 ldv~~~~~~l~~~i~~l~~~-gI~VSLFiDP----~------~~qi~~A~~~GAd~VELhTG~Y-A~a~~~~-------~  163 (237)
T TIGR00559       103 LDVARLKDKLCELVKRFHAA-GIEVSLFIDA----D------KDQISAAAEVGADRIEIHTGPY-ANAYNKK-------E  163 (237)
T ss_pred             chhhhCHHHHHHHHHHHHHC-CCEEEEEeCC----C------HHHHHHHHHhCcCEEEEechhh-hcCCCch-------h
Confidence            67778899999999999885 8888876433    1      3556777999999999995542 1111110       1


Q ss_pred             cHHHHHHHH------HhCCCCeEEEecCCCCHHHHHHHHhh---cCEEEEehhhhhC
Q psy2386         173 KYNFVYNLK------KDFPELEIIINGGIKTKKEIDLHLNY---IDGVMLGREAYKN  220 (311)
Q Consensus       173 ~~~~i~~i~------~~~~~ipvi~nGgI~s~~da~~~l~~---adgVmigRa~l~~  220 (311)
                      ..+.+.+++      ... .+-|-+.-|+ +++.+..+...   .+=|-||.+++.+
T Consensus       164 ~~~el~~i~~aa~~A~~l-GL~VnAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~  218 (237)
T TIGR00559       164 MAEELQRIVKASVHAHSL-GLKVNAGHGL-NYHNVKYFAEILPYLDELNIGHAIIAD  218 (237)
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHH
Confidence            011233332      233 4555555555 45666555432   6788888877543

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=93.18  E-value=1.7  Score=40.77  Aligned_cols=89  Identities=17%  Similarity=0.193  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      .|+.+.+-++.+++.++.|+.|-+..- ..     ...+.++.+.+.|++.|.++...                 ..+++
T Consensus        46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~-~~-----~~~~~~~~~~~~~v~~v~~~~g~-----------------p~~~i  102 (307)
T TIGR03151        46 PPDVVRKEIRKVKELTDKPFGVNIMLL-SP-----FVDELVDLVIEEKVPVVTTGAGN-----------------PGKYI  102 (307)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEeeecC-CC-----CHHHHHHHHHhCCCCEEEEcCCC-----------------cHHHH
Confidence            589999999999998899998876542 11     12456777788999999875322                 13578


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .++++.  .++|+.  .|.|.+.+.++.+. +|+|.+
T Consensus       103 ~~lk~~--g~~v~~--~v~s~~~a~~a~~~GaD~Ivv  135 (307)
T TIGR03151       103 PRLKEN--GVKVIP--VVASVALAKRMEKAGADAVIA  135 (307)
T ss_pred             HHHHHc--CCEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence            888875  578774  88999999888876 999987

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=93.16  E-value=1.5  Score=38.77  Aligned_cols=95  Identities=13%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adg  210 (311)
                      ++...+++.|.+.|++.|-|.=|+.               .-.+.|+++++.+| =-+|+.|-|-+++++.+..+. |+.
T Consensus        25 e~a~~~a~Ali~gGi~~IEITl~sp---------------~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~f   88 (211)
T COG0800          25 EEALPLAKALIEGGIPAIEITLRTP---------------AALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQF   88 (211)
T ss_pred             HHHHHHHHHHHHcCCCeEEEecCCC---------------CHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCE
Confidence            3678999999999999999988873               35689999999986 568999999999999999976 886


Q ss_pred             EEEehhhhhCCcchHHhHhhhccCCC--CCCCCCHHHHHHH
Q psy2386         211 VMLGREAYKNPFLMSNFDLNYYSNLP--QYKIPTRIDIINR  249 (311)
Q Consensus       211 VmigRa~l~~P~i~~~~~~~~~~~~~--~~~~~~~~~~~~~  249 (311)
                      +..       |.+-.++.+.....+.  .+-..|+.|+...
T Consensus        89 iVs-------P~~~~ev~~~a~~~~ip~~PG~~TptEi~~A  122 (211)
T COG0800          89 IVS-------PGLNPEVAKAANRYGIPYIPGVATPTEIMAA  122 (211)
T ss_pred             EEC-------CCCCHHHHHHHHhCCCcccCCCCCHHHHHHH
Confidence            653       5555555443322222  1234567776644

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=93.11  E-value=4.6  Score=40.13  Aligned_cols=218  Identities=12%  Similarity=0.166  Sum_probs=115.8

Q ss_pred             CHHHHHHH-HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKS-AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~a-a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      -|+++.+. .+.+.+.|+|.|.|=.++               ++.+.+...++.+++. +..|..-+...+....+.+.+
T Consensus        92 ~~dDvv~~fv~~A~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~t~e~~  155 (467)
T PRK14041         92 YADDVVELFVKKVAEYGLDIIRIFDAL---------------NDIRNLEKSIEVAKKH-GAHVQGAISYTVSPVHTLEYY  155 (467)
T ss_pred             ccchhhHHHHHHHHHCCcCEEEEEEeC---------------CHHHHHHHHHHHHHHC-CCEEEEEEEeccCCCCCHHHH
Confidence            35553333 566678899987775322               2345566666776664 444443333222223345678


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDG  210 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adg  210 (311)
                      .++++.+.++|++.|.+-.-.+    +.      .|..-.++++.+++.+ ++||-.-+    |.....-...+-.+||.
T Consensus       156 ~~~a~~l~~~Gad~I~i~Dt~G----~l------~P~~v~~Lv~~lk~~~-~vpI~~H~Hnt~GlA~AN~laAieaGad~  224 (467)
T PRK14041        156 LEFARELVDMGVDSICIKDMAG----LL------TPKRAYELVKALKKKF-GVPVEVHSHCTTGLASLAYLAAVEAGADM  224 (467)
T ss_pred             HHHHHHHHHcCCCEEEECCccC----Cc------CHHHHHHHHHHHHHhc-CCceEEEecCCCCcHHHHHHHHHHhCCCE
Confidence            8999999999999998854332    11      1123457889999988 58885544    33322222222233554


Q ss_pred             EE-----EehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc
Q psy2386         211 VM-----LGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS  283 (311)
Q Consensus       211 Vm-----igRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~  283 (311)
                      |-     +|.++ +||.+-.- ...+.+.+. ....+. +.+..+.+|++.... |... ....  ---..-|.+.+||+
T Consensus       225 vD~sv~~~g~ga-gN~atE~l-v~~L~~~g~-~tgiDl-~~L~~~~~~~~~vr~~y~~~~~~~~--~~~~~v~~~q~PGG  298 (467)
T PRK14041        225 FDTAISPFSMGT-SQPPFESM-YYAFRENGK-ETDFDR-KALKFLVEYFTKVREKYSEYDVGMK--SPDSRILVSQIPGG  298 (467)
T ss_pred             EEeeccccCCCC-CChhHHHH-HHHHHhcCC-CCCcCH-HHHHHHHHHHHHHHHHHhhcCCCCC--CCCcCeeeCCCCcc
Confidence            43     34443 47764332 222222111 122333 445555556655444 2110 0010  00112245678886


Q ss_pred             H--HHHHHHhCCCCCCCChHHHHHHh
Q psy2386         284 N--KFKQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       284 ~--~~r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      -  .+++.+.+..... ...++++|+
T Consensus       299 ~~snl~~Ql~~~g~~~-~~~~v~~e~  323 (467)
T PRK14041        299 MYSNLVKQLKEQKMLH-KLDKVLEEV  323 (467)
T ss_pred             hHHHHHHHHHHCCcHh-HHHHHHHHH
Confidence            3  6777777777666 677777665

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=93.09  E-value=7.3  Score=36.06  Aligned_cols=155  Identities=14%  Similarity=0.078  Sum_probs=95.0

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK  120 (311)
                      .....|+++++++.+.++..+.++.+++.|+|+|-+-  -|...          -.+.+.+.+-.++|.+++ +.|+.+=
T Consensus        67 ~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~--~P~y~----------~~~~~~i~~yf~~v~~~~~~lpv~lY  134 (290)
T TIGR00683        67 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV--TPFYY----------KFSFPEIKHYYDTIIAETGGLNMIVY  134 (290)
T ss_pred             hCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe--CCcCC----------CCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            4456799999999999999999999999999999983  24421          123566777777776655 6898775


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      --.++...+   -..+++..+.+.+ ..+-+---                ..|+..+.++.+..+++.| .+|.=   +.
T Consensus       135 n~P~~tg~~---l~~~~i~~L~~~p-nv~giK~s----------------~~d~~~~~~~~~~~~~~~v-~~G~d---~~  190 (290)
T TIGR00683       135 SIPFLTGVN---MGIEQFGELYKNP-KVLGVKFT----------------AGDFYLLERLKKAYPNHLI-WAGFD---EM  190 (290)
T ss_pred             eCccccccC---cCHHHHHHHhcCC-CEEEEEeC----------------CCCHHHHHHHHHhCCCCEE-EECch---HH
Confidence            333222111   1245566665532 11111100                0266777777776656644 45541   22


Q ss_pred             HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         201 IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       201 a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      +...+. +++|.+.+-+.+. |..+.++.+.+..
T Consensus       191 ~~~~l~~G~~G~i~~~~n~~-P~~~~~i~~~~~~  223 (290)
T TIGR00683       191 MLPAASLGVDGAIGSTFNVN-GVRARQIFELTKA  223 (290)
T ss_pred             HHHHHHCCCCEEEecHHHhC-HHHHHHHHHHHHC
Confidence            333333 4999998866653 7777777665543

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=93.08  E-value=2.7  Score=39.90  Aligned_cols=114  Identities=15%  Similarity=0.187  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCcccccc----CcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN----GFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~----~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                      .+.+++.+.|+.+.+.|++.   .-|-..++.++    .|.|       +.-.+++..+++..++|+..-+-   +    
T Consensus       104 Es~e~~~~~A~~lk~~ga~~---~r~~~fKpRTsp~sf~G~g-------~~gL~~L~~~~~~~Gl~v~tev~---d----  166 (335)
T PRK08673        104 ESEEQILEIARAVKEAGAQI---LRGGAFKPRTSPYSFQGLG-------EEGLKLLAEAREETGLPIVTEVM---D----  166 (335)
T ss_pred             CCHHHHHHHHHHHHHhchhh---ccCcEecCCCCCccccccc-------HHHHHHHHHHHHHcCCcEEEeeC---C----
Confidence            46789999999999988763   33333333222    2333       33445777778888999876332   2    


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~  207 (311)
                          .+-+..+.+. +|.+.|-+|+.               -|+++++++.+.  +.||+..=|.. |++++....+.
T Consensus       167 ----~~~~~~l~~~-vd~lqIgAr~~---------------~N~~LL~~va~~--~kPViLk~G~~~ti~E~l~A~e~  222 (335)
T PRK08673        167 ----PRDVELVAEY-VDILQIGARNM---------------QNFDLLKEVGKT--NKPVLLKRGMSATIEEWLMAAEY  222 (335)
T ss_pred             ----HHHHHHHHHh-CCeEEECcccc---------------cCHHHHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHH
Confidence                1234445666 89999998874               378888888764  68999888877 88887766653

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=93.00  E-value=6.3  Score=37.33  Aligned_cols=114  Identities=13%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      ..+++.+..+.+++.|.+.+--           .+|||.-|     -||.-+.|..++..+.+     .++||.++.-..
T Consensus        74 ~~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K-----IaS~~~~n~pLL~~~A~-----~gkPvilStGma  143 (329)
T TIGR03569        74 SEEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFK-----IPSGEITNAPLLKKIAR-----FGKPVILSTGMA  143 (329)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEE-----ECcccccCHHHHHHHHh-----cCCcEEEECCCC
Confidence            3566777777788877665432           46788776     46677889888776543     489999876542


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCC---EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCR---TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~---~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                           +.+++...+..+.+.|..   .+.+|+-+. |..       ....+|+..|..+++.+ ++||..++
T Consensus       144 -----tl~Ei~~Av~~i~~~G~~~~~i~llhC~s~-YP~-------~~~~~nL~~I~~Lk~~f-~~pVG~Sd  201 (329)
T TIGR03569       144 -----TLEEIEAAVGVLRDAGTPDSNITLLHCTTE-YPA-------PFEDVNLNAMDTLKEAF-DLPVGYSD  201 (329)
T ss_pred             -----CHHHHHHHHHHHHHcCCCcCcEEEEEECCC-CCC-------CcccCCHHHHHHHHHHh-CCCEEECC
Confidence                 234567777888888975   666785532 111       12236899999999998 79999874

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>KOG4201|consensus

Probab=92.99  E-value=0.67  Score=40.93  Aligned_cols=76  Identities=17%  Similarity=0.237  Sum_probs=57.6

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      .+++.+.|+..|-|..|.-  ..|         ..|+....++.+..| ++-+++-.||+|++|+..+-.. +.+|.+|.
T Consensus       199 m~raleiGakvvGvNNRnL--~sF---------eVDlstTskL~E~i~kDvilva~SGi~tpdDia~~q~~GV~avLVGE  267 (289)
T KOG4201|consen  199 MQRALEIGAKVVGVNNRNL--HSF---------EVDLSTTSKLLEGIPKDVILVALSGIFTPDDIAKYQKAGVKAVLVGE  267 (289)
T ss_pred             HHHHHHhCcEEEeecCCcc--cee---------eechhhHHHHHhhCccceEEEeccCCCCHHHHHHHHHcCceEEEecH
Confidence            4555566888888887762  222         257777788887765 4777888899999999999876 99999999


Q ss_pred             hhhhCCcch
Q psy2386         216 EAYKNPFLM  224 (311)
Q Consensus       216 a~l~~P~i~  224 (311)
                      .++....--
T Consensus       268 slmk~sDp~  276 (289)
T KOG4201|consen  268 SLMKQSDPK  276 (289)
T ss_pred             HHHhccCHH
Confidence            998765533

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=92.95  E-value=5.5  Score=40.74  Aligned_cols=218  Identities=13%  Similarity=0.155  Sum_probs=118.3

Q ss_pred             HHH-HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          57 PKK-LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        57 ~~~-~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      |++ ...-.+.+.+.|+|.|.|-..+               ++.+.+...++.+++. +.-|.+-+........+.+.+.
T Consensus        89 pddvv~~~v~~a~~~Gvd~irif~~l---------------nd~~n~~~~i~~ak~~-G~~v~~~i~~t~~p~~~~~~~~  152 (582)
T TIGR01108        89 ADDVVERFVKKAVENGMDVFRIFDAL---------------NDPRNLQAAIQAAKKH-GAHAQGTISYTTSPVHTLETYL  152 (582)
T ss_pred             chhhHHHHHHHHHHCCCCEEEEEEec---------------CcHHHHHHHHHHHHHc-CCEEEEEEEeccCCCCCHHHHH
Confidence            444 3334566678899987775222               2335566777777664 4444433322222223445788


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDGV  211 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adgV  211 (311)
                      ++++.+.++|++.|.+-...+   ...       |..-.++++++++.+ ++||-.-.    |.....-...+-.+||.|
T Consensus       153 ~~~~~~~~~Gad~I~i~Dt~G---~~~-------P~~v~~lv~~lk~~~-~~pi~~H~Hnt~Gla~An~laAveaGa~~v  221 (582)
T TIGR01108       153 DLAEELLEMGVDSICIKDMAG---ILT-------PKAAYELVSALKKRF-GLPVHLHSHATTGMAEMALLKAIEAGADGI  221 (582)
T ss_pred             HHHHHHHHcCCCEEEECCCCC---CcC-------HHHHHHHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence            999999999999998854322   111       123467889999888 58875443    333333333333335544


Q ss_pred             EE---eh-hhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCc--
Q psy2386         212 ML---GR-EAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGS--  283 (311)
Q Consensus       212 mi---gR-a~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~--  283 (311)
                      -.   |= +..+||.+-.-+. .+.+.+. ....+ .+.+..+.+|+..... |... ......  ...-|.+.+||.  
T Consensus       222 d~ai~GlG~~tGn~~le~vv~-~L~~~g~-~tgid-~~~L~~l~~~~~~v~~~Y~~~~~~~~~~--~~~v~~~e~pGG~~  296 (582)
T TIGR01108       222 DTAISSMSGGTSHPPTETMVA-ALRGTGY-DTGLD-IELLLEIAAYFREVRKKYSQFEGQLKGP--DSRILVAQVPGGML  296 (582)
T ss_pred             EeccccccccccChhHHHHHH-HHHhcCC-CcccC-HHHHHHHHHHHHHHHHHhhcCCCcccCC--CccEEEEcCCCchH
Confidence            33   31 2357777544332 2222111 01233 3455555666665444 2100 011111  112246789999  


Q ss_pred             HHHHHHHhCCCCCCCChHHHHHHh
Q psy2386         284 NKFKQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       284 ~~~r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      +.++..+.+..-.. ...++|+++
T Consensus       297 snl~~ql~~~g~~~-~~~~vl~e~  319 (582)
T TIGR01108       297 SNLESQLKEQNALD-KLDEVLEEI  319 (582)
T ss_pred             HHHHHHHHHCCCHH-HHHHHHHHH
Confidence            88999998887665 677777665

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>KOG3111|consensus

Probab=92.93  E-value=3.4  Score=36.02  Aligned_cols=131  Identities=16%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      .+..+|..+|-..+++=.+.+.++|+|++-+..  |.=++|.             .+=.-+|+++|++++.|....+-+-
T Consensus         6 ~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNi-------------T~G~pvV~slR~~~~~~~ffD~HmM   72 (224)
T KOG3111|consen    6 KIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNI-------------TFGPPVVESLRKHTGADPFFDVHMM   72 (224)
T ss_pred             eechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCc-------------ccchHHHHHHHhccCCCcceeEEEe
Confidence            366778888888888888888899999877652  3333332             3334578899998877633333332


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeE--EEecCCCCHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEI--IINGGIKTKKEI  201 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipv--i~nGgI~s~~da  201 (311)
                      ..+      ..+++..+..+|++.+|+|---.               -+ .+.++++++.  .+.+  ..+=| ++.+++
T Consensus        73 V~~------Peq~V~~~a~agas~~tfH~E~~---------------q~~~~lv~~ir~~--Gmk~G~alkPg-T~Ve~~  128 (224)
T KOG3111|consen   73 VEN------PEQWVDQMAKAGASLFTFHYEAT---------------QKPAELVEKIREK--GMKVGLALKPG-TPVEDL  128 (224)
T ss_pred             ecC------HHHHHHHHHhcCcceEEEEEeec---------------cCHHHHHHHHHHc--CCeeeEEeCCC-CcHHHH
Confidence            222      46889999999999999995431               12 3677888875  2332  22222 456777


Q ss_pred             HHHHhhcCEEEEe
Q psy2386         202 DLHLNYIDGVMLG  214 (311)
Q Consensus       202 ~~~l~~adgVmig  214 (311)
                      ....+.+|.|.|=
T Consensus       129 ~~~~~~~D~vLvM  141 (224)
T KOG3111|consen  129 EPLAEHVDMVLVM  141 (224)
T ss_pred             HHhhccccEEEEE
Confidence            7766668877663

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=92.93  E-value=0.71  Score=44.32  Aligned_cols=52  Identities=17%  Similarity=0.225  Sum_probs=42.2

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCcc
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPFL  223 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~i  223 (311)
                      +..+|+.|+++++.. ++||+.= ||.+++|++.+.+. +|+|.|    ||.+...|.-
T Consensus       213 ~~~~w~~i~~l~~~~-~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~  269 (367)
T TIGR02708       213 QKLSPRDIEEIAGYS-GLPVYVK-GPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAA  269 (367)
T ss_pred             CCCCHHHHHHHHHhc-CCCEEEe-CCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcH
Confidence            457899999999987 7999977 59999999999987 999877    4555555543

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=92.85  E-value=2.4  Score=40.77  Aligned_cols=97  Identities=14%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             CCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccccc--
Q psy2386          44 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--  115 (311)
Q Consensus        44 ~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--  115 (311)
                      .++|++.-++    |-|++.+++.+..+.+.|+|+|=..  .|-+..        ....++.+.+.+.++.+.+.++.  
T Consensus       128 ~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~--------~~~eER~~~v~~av~~a~~~TG~~~  199 (367)
T cd08205         128 HDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPY--------APFEERVRACMEAVRRANEETGRKT  199 (367)
T ss_pred             CCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCccc--------CCHHHHHHHHHHHHHHHHHhhCCcc
Confidence            4789888876    6679999999999999999998443  221111        11223445566666666655543  


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      ++.+-+.-  +    .++..+.++.++++|++++.+-.-
T Consensus       200 ~y~~nit~--~----~~e~i~~a~~a~~~Gad~vmv~~~  232 (367)
T cd08205         200 LYAPNITG--D----PDELRRRADRAVEAGANALLINPN  232 (367)
T ss_pred             eEEEEcCC--C----HHHHHHHHHHHHHcCCCEEEEecc
Confidence            33333321  1    136789999999999999987543

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=92.75  E-value=8.1  Score=38.71  Aligned_cols=214  Identities=11%  Similarity=0.030  Sum_probs=111.3

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCCCcHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      ..-.+.+.+.|.|.|-|=  +|             ++|.+.+...++++++.-... ..+-+..+  ...+.+.+.++++
T Consensus       100 ~~fv~~a~~~Gidi~RIf--d~-------------lndv~nl~~ai~~vk~ag~~~~~~i~yt~s--p~~t~e~~~~~a~  162 (499)
T PRK12330        100 DRFVEKSAENGMDVFRVF--DA-------------LNDPRNLEHAMKAVKKVGKHAQGTICYTVS--PIHTVEGFVEQAK  162 (499)
T ss_pred             HHHHHHHHHcCCCEEEEE--ec-------------CChHHHHHHHHHHHHHhCCeEEEEEEEecC--CCCCHHHHHHHHH
Confidence            334456677899987663  33             356688888888888764322 22222222  2334567899999


Q ss_pred             HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEec----CCCCHHHHHHHHhhcCEE---
Q psy2386         140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIING----GIKTKKEIDLHLNYIDGV---  211 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nG----gI~s~~da~~~l~~adgV---  211 (311)
                      .+.++|++.|.+-.-.+    +.      .|..-.+++..+++.+| ++||-.-.    |.....-...+-.+||.|   
T Consensus       163 ~l~~~Gad~I~IkDtaG----ll------~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDta  232 (499)
T PRK12330        163 RLLDMGADSICIKDMAA----LL------KPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTA  232 (499)
T ss_pred             HHHHcCCCEEEeCCCcc----CC------CHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEee
Confidence            99999999998854432    11      11234678999999885 68886554    333333332322334433   


Q ss_pred             EEehh-hhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHH-hHHHHhccCCCcH--HH
Q psy2386         212 MLGRE-AYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITR-HMLGLMKNIKGSN--KF  286 (311)
Q Consensus       212 migRa-~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k-~~~~~~~g~~~~~--~~  286 (311)
                      +-|=| .-+||.+- .+...+.+.+. ....+. +.+..+.+|+..... +.. . ...++. ....|...+||+-  .+
T Consensus       233 i~Glg~~aGn~atE-~vv~~L~~~g~-~tgiDl-~~L~~i~~~~~~vr~~y~~-~-~~~~~~~d~~v~~~qiPGGm~snl  307 (499)
T PRK12330        233 ISSMSLGPGHNPTE-SLVEMLEGTGY-TTKLDM-DRLLKIRDHFKKVRPKYKE-F-ESKTTGVETEIFKSQIPGGMLSNM  307 (499)
T ss_pred             cccccccccchhHH-HHHHHHHhcCC-CCCCCH-HHHHHHHHHHHHHHHHHhc-c-cccccCCCCccccCCCCCCchhhH
Confidence            33311 12555532 22222322211 123343 445555666665544 211 0 001111 1122334577754  34


Q ss_pred             HHHHhCCCCCCCChHHHHHHh
Q psy2386         287 KQILSKPNLLTIDNFQFFLNT  307 (311)
Q Consensus       287 r~~l~~~~~~~~~~~~~l~~~  307 (311)
                      ++.|....... ...++|+|+
T Consensus       308 ~~Ql~~~g~~d-~~~ev~~e~  327 (499)
T PRK12330        308 ESQLKQQGAGD-RMDEVLEEV  327 (499)
T ss_pred             HHHHHHcChhh-HHHHHHHHH
Confidence            55565555444 566666554

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=92.73  E-value=4.7  Score=38.76  Aligned_cols=119  Identities=13%  Similarity=0.063  Sum_probs=76.4

Q ss_pred             CCCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--c
Q psy2386          43 AEEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--I  115 (311)
Q Consensus        43 ~~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~  115 (311)
                      -.++|++..+.   |-+|+.+++.+..+...|+|.|--  |.|.+...        .+.++.+.+.+.++...+.++  +
T Consensus       123 v~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~--------p~~eRv~~v~~av~~a~~eTG~~~  194 (364)
T cd08210         123 IPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKDDHGLADQPFA--------PFEERVKACQEAVAEANAETGGRT  194 (364)
T ss_pred             CCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeecCccccCccCC--------CHHHHHHHHHHHHHHHHhhcCCcc
Confidence            35788877664   889999999999998899999833  34432211        122344556666666665554  4


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEe
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIIN  192 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~n  192 (311)
                      ++.+-+.-  +    .++..+.++.++++|++++-+..-+.                -|+.+..+++.. . +||.+-
T Consensus       195 ~y~~Nita--~----~~em~~ra~~a~~~Ga~~vMv~~~~~----------------G~~~~~~l~~~~-~~l~i~aH  249 (364)
T cd08210         195 LYAPNVTG--P----PTQLLERARFAKEAGAGGVLIAPGLT----------------GLDTFRELAEDF-DFLPILAH  249 (364)
T ss_pred             eEEEecCC--C----HHHHHHHHHHHHHcCCCEEEeecccc----------------hHHHHHHHHhcC-CCcEEEEc
Confidence            55554432  1    22578889999999999998764432                244556666664 5 777654

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=92.54  E-value=0.55  Score=42.78  Aligned_cols=77  Identities=14%  Similarity=0.102  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.++++|+++|.|..-..+++|            +++.+..+++.+ ++||...==|.++-++.+.... ||+|
T Consensus        69 d~~~~a~~y~~~GA~aiSVlTe~~~F~G------------s~~dL~~v~~~~-~~PvL~KDFIid~~QI~eA~~~GADaV  135 (254)
T PF00218_consen   69 DPAEIAKAYEEAGAAAISVLTEPKFFGG------------SLEDLRAVRKAV-DLPVLRKDFIIDPYQIYEARAAGADAV  135 (254)
T ss_dssp             SHHHHHHHHHHTT-SEEEEE--SCCCHH------------HHHHHHHHHHHS-SS-EEEES---SHHHHHHHHHTT-SEE
T ss_pred             CHHHHHHHHHhcCCCEEEEECCCCCCCC------------CHHHHHHHHHHh-CCCcccccCCCCHHHHHHHHHcCCCEe
Confidence            3679999999999999999765544555            688999999998 8999999889999999988876 9999


Q ss_pred             EEehhhhhCCc
Q psy2386         212 MLGREAYKNPF  222 (311)
Q Consensus       212 migRa~l~~P~  222 (311)
                      .+=-+++.+-.
T Consensus       136 LLI~~~L~~~~  146 (254)
T PF00218_consen  136 LLIAAILSDDQ  146 (254)
T ss_dssp             EEEGGGSGHHH
T ss_pred             ehhHHhCCHHH
Confidence            88766665533

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=92.52  E-value=2.2  Score=37.51  Aligned_cols=136  Identities=18%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--c-CC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--G-ID  126 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--g-~~  126 (311)
                      +-++-.++++.    ..+++.|+|-|||+.+ .    ..+    .|  .|..  ..++.+++.+++||-|=||+  | |.
T Consensus         3 lEvcv~s~~~a----~~A~~~GAdRiELc~~-l----~~G----Gl--TPS~--g~i~~~~~~~~ipv~vMIRpr~gdF~   65 (201)
T PF03932_consen    3 LEVCVESLEDA----LAAEAGGADRIELCSN-L----EVG----GL--TPSL--GLIRQAREAVDIPVHVMIRPRGGDFV   65 (201)
T ss_dssp             EEEEESSHHHH----HHHHHTT-SEEEEEBT-G----GGT-----B-----H--HHHHHHHHHTTSEEEEE--SSSS-S-
T ss_pred             EEEEeCCHHHH----HHHHHcCCCEEEECCC-c----cCC----Cc--CcCH--HHHHHHHhhcCCceEEEECCCCCCcc
Confidence            44555565554    4455889999999842 1    111    12  2332  44555666789999988886  2 11


Q ss_pred             -CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec---CCCCHHHHH
Q psy2386         127 -DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING---GIKTKKEID  202 (311)
Q Consensus       127 -~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG---gI~s~~da~  202 (311)
                       .+++.+...+-++.+.+.|++.+.+-.=+.  .          +..|.+.++++.+....+|+...=   -+.++..+.
T Consensus        66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~--d----------g~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al  133 (201)
T PF03932_consen   66 YSDEEIEIMKEDIRMLRELGADGFVFGALTE--D----------GEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEAL  133 (201)
T ss_dssp             --HHHHHHHHHHHHHHHHTT-SEEEE--BET--T----------SSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCeeEEEeECC--C----------CCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHH
Confidence             122334555667788899999998854442  1          127888888888876568888765   344555555


Q ss_pred             HHHhh--cCEEEEe
Q psy2386         203 LHLNY--IDGVMLG  214 (311)
Q Consensus       203 ~~l~~--adgVmig  214 (311)
                      +.+..  ++.|.-.
T Consensus       134 ~~L~~lG~~rVLTS  147 (201)
T PF03932_consen  134 EQLIELGFDRVLTS  147 (201)
T ss_dssp             HHHHHHT-SEEEES
T ss_pred             HHHHhcCCCEEECC
Confidence            55433  7766653

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=92.50  E-value=8.3  Score=35.26  Aligned_cols=86  Identities=14%  Similarity=0.156  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      -++++..+.++.+.++|+|.||+-+.....   ....|.....+.+.+.++.+..+.  +.++.+-+|.+..+       
T Consensus        17 f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~-------   84 (266)
T cd07944          17 FGDEFVKAIYRALAAAGIDYVEIGYRSSPE---KEFKGKSAFCDDEFLRRLLGDSKG--NTKIAVMVDYGNDD-------   84 (266)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEeecCCCCc---cccCCCccCCCHHHHHHHHhhhcc--CCEEEEEECCCCCC-------
Confidence            367888999999999999999997654432   345677777788888887776531  34566655654321       


Q ss_pred             HHHHHHHHHcCCCEEEEe
Q psy2386         135 RDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh  152 (311)
                      .+.++...+.|++.|.+.
T Consensus        85 ~~~l~~a~~~gv~~iri~  102 (266)
T cd07944          85 IDLLEPASGSVVDMIRVA  102 (266)
T ss_pred             HHHHHHHhcCCcCEEEEe
Confidence            244566677888887664

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=92.48  E-value=1.5  Score=42.02  Aligned_cols=43  Identities=19%  Similarity=0.455  Sum_probs=35.4

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +..+|+.|+++++.. ++|||.=|= .|++|+..+.+. +|+|.|+
T Consensus       210 ~~~~w~~i~~~~~~~-~~pvivKgv-~~~~da~~~~~~G~~~i~vs  253 (356)
T PF01070_consen  210 PSLTWDDIEWIRKQW-KLPVIVKGV-LSPEDAKRAVDAGVDGIDVS  253 (356)
T ss_dssp             TT-SHHHHHHHHHHC-SSEEEEEEE--SHHHHHHHHHTT-SEEEEE
T ss_pred             CCCCHHHHHHHhccc-CCceEEEec-ccHHHHHHHHhcCCCEEEec
Confidence            446899999999998 799998764 999999999987 9999995

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=92.48  E-value=8.8  Score=35.46  Aligned_cols=153  Identities=14%  Similarity=0.051  Sum_probs=97.0

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|++++++. +..+..+.++.+++.|+|+|-+  --|...          ..+.+-+.+-.+++.+++++||.+=-
T Consensus        66 ~~~~~pvi~gv~~-~t~~~i~~a~~a~~~Gad~v~~--~pP~y~----------~~~~~~i~~~f~~v~~~~~~pi~lYn  132 (289)
T cd00951          66 TAGRVPVLAGAGY-GTATAIAYAQAAEKAGADGILL--LPPYLT----------EAPQEGLYAHVEAVCKSTDLGVIVYN  132 (289)
T ss_pred             hCCCCCEEEecCC-CHHHHHHHHHHHHHhCCCEEEE--CCCCCC----------CCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3456899999976 8888899999999999999987  233321          12467788888888888899998876


Q ss_pred             eccCCCCCcHHHHHHHHHHHHH-cC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSS-AG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~-~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      +.|.+-      ..+++.+|.+ .+ +.++.-.                  ..|+..+.++.+..++--.+.+|. .+.+
T Consensus       133 ~~g~~l------~~~~l~~L~~~~pnivgiKds------------------~~d~~~~~~~~~~~~~~~~v~~G~-~~~d  187 (289)
T cd00951         133 RANAVL------TADSLARLAERCPNLVGFKDG------------------VGDIELMRRIVAKLGDRLLYLGGL-PTAE  187 (289)
T ss_pred             CCCCCC------CHHHHHHHHhcCCCEEEEEeC------------------CCCHHHHHHHHHhcCCCeEEEeCC-Ccch
Confidence            665432      1455666655 32 2222111                  026777777766653322344553 2222


Q ss_pred             H-HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         200 E-IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       200 d-a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      . +...+. +++|.+.|-+.+ -|.++.++.+.+..
T Consensus       188 ~~~~~~l~~Ga~G~is~~~n~-~P~~~~~l~~~~~~  222 (289)
T cd00951         188 VFALAYLAMGVPTYSSAVFNF-VPEIALAFYAAVRA  222 (289)
T ss_pred             HhHHHHHHCCCCEEEechhhh-hHHHHHHHHHHHHc
Confidence            2 234443 499999887765 47777777665543

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=92.46  E-value=0.77  Score=42.66  Aligned_cols=85  Identities=13%  Similarity=0.129  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      .+.+.++++.+.+.|++.|.+.|-|.....++-.       -..+.++.+.+.+. ++||++.=+-.|.+++.++.+.  
T Consensus        20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~-------Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~   92 (294)
T TIGR02313        20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLE-------ERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAE   92 (294)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccCcccccCCHH-------HHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHH
Confidence            4567888999999999999999888633333211       12344555554442 4899877666777777666542  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+.-..+..|.
T Consensus        93 ~~Gad~v~v~pP~y~~~~  110 (294)
T TIGR02313        93 EAGADAAMVIVPYYNKPN  110 (294)
T ss_pred             HcCCCEEEEcCccCCCCC
Confidence               999999999888773

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PLN02363 phosphoribosylanthranilate isomerase

Probab=92.35  E-value=3.3  Score=37.80  Aligned_cols=85  Identities=11%  Similarity=0.061  Sum_probs=55.5

Q ss_pred             eEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          48 IAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      ..++|+|- ++++.    +.+.++|+|.|=+.+-.+++.          .=+++.+.+|++.+....-.+|.|-..    
T Consensus        47 ~~VKICGit~~eda----~~a~~~GaD~iGfIf~~~SpR----------~Vs~e~a~~I~~~l~~~~~~~VgVfv~----  108 (256)
T PLN02363         47 PLVKMCGITSARDA----AMAVEAGADFIGMILWPKSKR----------SISLSVAKEISQVAREGGAKPVGVFVD----  108 (256)
T ss_pred             ceEEECCCCcHHHH----HHHHHcCCCEEEEecCCCCCC----------cCCHHHHHHHHHhccccCccEEEEEeC----
Confidence            46999996 45544    344578999999985444432          135788899988775421123333222    


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                        .+   ..++++.+++.|.|.|.+||-.
T Consensus       109 --~~---~~~I~~~~~~~~ld~VQLHG~e  132 (256)
T PLN02363        109 --DD---ANTILRAADSSDLELVQLHGNG  132 (256)
T ss_pred             --CC---HHHHHHHHHhcCCCEEEECCCC
Confidence              11   3467788899999999999864

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=92.25  E-value=3.6  Score=37.90  Aligned_cols=123  Identities=16%  Similarity=0.190  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      ++.+...+++.     +|.+.|              |+.++++.+++.++-+.     +.||-+|=-......    +..
T Consensus        96 ~~~~~~~~ae~-----vDilQI--------------gAr~~rntdLL~a~~~t-----~kpV~lKrGqf~s~~----e~~  147 (281)
T PRK12457         96 EVEQAAPVAEV-----ADVLQV--------------PAFLARQTDLVVAIAKT-----GKPVNIKKPQFMSPT----QMK  147 (281)
T ss_pred             CHHHHHHHhhh-----CeEEee--------------CchhhchHHHHHHHhcc-----CCeEEecCCCcCCHH----HHH


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-----------------CH
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-----------------TK  198 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-----------------s~  198 (311)
                      ..++.+.+.|...|.+.-|-... ||.-.      ..|...+..+++..+.+|||.---=.                 =+
T Consensus       148 ~aae~i~~~Gn~~vilcERG~~f-gy~~~------~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~  220 (281)
T PRK12457        148 HVVSKCREAGNDRVILCERGSSF-GYDNL------VVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVL  220 (281)
T ss_pred             HHHHHHHHcCCCeEEEEeCCCCC-CCCCc------ccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHH


Q ss_pred             HHHHHHHhh-cCEEEE
Q psy2386         199 KEIDLHLNY-IDGVML  213 (311)
Q Consensus       199 ~da~~~l~~-adgVmi  213 (311)
                      .-++..+.. +||+|+
T Consensus       221 ~larAAvA~GaDGl~i  236 (281)
T PRK12457        221 DLARAGMAVGLAGLFL  236 (281)
T ss_pred             HHHHHHHHhCCCEEEE

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=92.25  E-value=6.7  Score=37.46  Aligned_cols=80  Identities=10%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      +.+.++|+|.|=+..-  .-..+.  .  ++--..+.+.++++.+.+. ++.+.|=+..-.-++. .+.+.+.++.+.+.
T Consensus        20 ~~ai~~GADaVY~G~~--~~~~R~--~--a~nfs~~~l~e~i~~ah~~-gkk~~V~~N~~~~~~~-~~~~~~~l~~l~e~   91 (347)
T COG0826          20 KAAIAAGADAVYIGEK--EFGLRR--R--ALNFSVEDLAEAVELAHSA-GKKVYVAVNTLLHNDE-LETLERYLDRLVEL   91 (347)
T ss_pred             HHHHHcCCCEEEeCCc--cccccc--c--cccCCHHHHHHHHHHHHHc-CCeEEEEeccccccch-hhHHHHHHHHHHHc
Confidence            3344678898877522  111111  1  1112334478888887775 6666666555333322 33567899999999


Q ss_pred             CCCEEEEe
Q psy2386         145 GCRTFIVH  152 (311)
Q Consensus       145 G~~~itvh  152 (311)
                      |+|+|++-
T Consensus        92 GvDaviv~   99 (347)
T COG0826          92 GVDAVIVA   99 (347)
T ss_pred             CCCEEEEc
Confidence            99999873

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=92.15  E-value=6.1  Score=34.79  Aligned_cols=142  Identities=14%  Similarity=0.127  Sum_probs=79.4

Q ss_pred             CeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE--EEEec
Q psy2386          47 PIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT--VKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs--vKiR~  123 (311)
                      ++++=+--.| |+....+++.+.++|+|.|-+|....                ++.+...++..++. +.-+.  +.+.-
T Consensus        51 ~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g----------------~~~l~~~~~~~~~~-~~~v~~v~~lss  113 (213)
T TIGR01740        51 LIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAG----------------SESVEAAKEAASEG-GRGLLAVTELTS  113 (213)
T ss_pred             CEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCC----------------HHHHHHHHHHhhcC-CCeEEEEEcCCC
Confidence            5666664233 45555556666789999999993221                34455555555443 22122  22221


Q ss_pred             -cC-CCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-
Q psy2386         124 -GI-DDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-  199 (311)
Q Consensus       124 -g~-~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-  199 (311)
                       +. +.... .+...++++...+.|++.+..+                     -+.+..+++..++ .++..+||+-.. 
T Consensus       114 ~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~---------------------~~~~~~ir~~~~~-~~~vtPGI~~~g~  171 (213)
T TIGR01740       114 MGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCS---------------------AEEAKEIRKFTGD-FLILTPGIRLQSK  171 (213)
T ss_pred             CChhhhCcCHHHHHHHHHHHhhhcCCeEEEeC---------------------HHHHHHHHHhcCC-ceEEeCCcCCCCC
Confidence             11 00111 2345666677777777766421                     1335556665533 468888887431 


Q ss_pred             -H--------HHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         200 -E--------IDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       200 -d--------a~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                       .        ..++.+. +|.+.+||++++.+...+.+
T Consensus       172 ~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~  209 (213)
T TIGR01740       172 GADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAA  209 (213)
T ss_pred             CcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHH
Confidence             1        1444444 99999999999877654443

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]

Probab=92.07  E-value=1.2  Score=44.52  Aligned_cols=107  Identities=16%  Similarity=0.230  Sum_probs=70.6

Q ss_pred             HHHHHHhcccccee-EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---------------------ccccC
Q psy2386         104 DCIKAMRDSVEIDI-TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---------------------FLKKL  161 (311)
Q Consensus       104 ~iv~~v~~~~~~pv-svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---------------------~~~G~  161 (311)
                      ++|+.+|.. +-|+ .|-|..|..+   .++..|+++.|-..|+.++.+-+.+-                     |.+|-
T Consensus       112 rLv~kara~-G~~I~gvvIsAGIP~---le~A~ElI~~L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~egGr  187 (717)
T COG4981         112 RLVQKARAS-GAPIDGVVISAGIPS---LEEAVELIEELGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEGGR  187 (717)
T ss_pred             HHHHHHHhc-CCCcceEEEecCCCc---HHHHHHHHHHHhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEecCc
Confidence            456666653 4444 3556666554   34567888888888999988654431                     12232


Q ss_pred             CCCcCCCCCcCcHH--------HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh------------cCEEEEehhhhhCC
Q psy2386         162 NPKQNRKIPILKYN--------FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY------------IDGVMLGREAYKNP  221 (311)
Q Consensus       162 ~g~~~~~~~~~~~~--------~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~------------adgVmigRa~l~~P  221 (311)
                      .|.      .-.|+        ...+++.. ++|-++..|||-|++++..+|..            .||+.+|+++|.-.
T Consensus       188 aGG------HHSweDld~llL~tYs~lR~~-~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK  260 (717)
T COG4981         188 AGG------HHSWEDLDDLLLATYSELRSR-DNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK  260 (717)
T ss_pred             cCC------ccchhhcccHHHHHHHHHhcC-CCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence            221      11232        23455655 48999999999999999999841            89999999997654

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=92.07  E-value=0.79  Score=43.53  Aligned_cols=102  Identities=12%  Similarity=0.100  Sum_probs=65.8

Q ss_pred             CeEEEec----------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          47 PIAFQVG----------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        47 p~~~Ql~----------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      |+.+-+.          |.+++++.+.++.+++.|+|.|++..|......            +..-.+.++.+++.+++|
T Consensus       220 ~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~------------~~~~~~~~~~ik~~~~ip  287 (338)
T cd02933         220 RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP------------EDQPPDFLDFLRKAFKGP  287 (338)
T ss_pred             ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc------------cccchHHHHHHHHHcCCC
Confidence            6887764          457789999999999999999999777533221            122235566777778899


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      |.+-=++  +    .   ....+.+++.++|.|.+ ||...              +|-+++.++++..
T Consensus       288 vi~~G~i--~----~---~~a~~~l~~g~~D~V~~-gR~~l--------------adP~~~~k~~~g~  331 (338)
T cd02933         288 LIAAGGY--D----A---ESAEAALADGKADLVAF-GRPFI--------------ANPDLVERLKNGA  331 (338)
T ss_pred             EEEECCC--C----H---HHHHHHHHcCCCCEEEe-CHhhh--------------hCcCHHHHHhcCC
Confidence            8874332  2    1   22234445556998876 56421              3456677777643

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PLN02417 dihydrodipicolinate synthase

Probab=92.04  E-value=0.83  Score=42.13  Aligned_cols=84  Identities=12%  Similarity=0.098  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      .+.+.+.++.+.+.|++.|.+.|-+....-++-.       -..+.++.+.+.+. ++||++.=+=.|.+++.++.+.  
T Consensus        21 ~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~-------Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~   93 (280)
T PLN02417         21 LEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWD-------EHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGF   93 (280)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccCcchhhCCHH-------HHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHH
Confidence            4467888999999999999999887633322211       12234444455442 4898876555566676666542  


Q ss_pred             ---cCEEEEehhhhhCC
Q psy2386         208 ---IDGVMLGREAYKNP  221 (311)
Q Consensus       208 ---adgVmigRa~l~~P  221 (311)
                         +|+||+.-..+..|
T Consensus        94 ~~Gadav~~~~P~y~~~  110 (280)
T PLN02417         94 AVGMHAALHINPYYGKT  110 (280)
T ss_pred             HcCCCEEEEcCCccCCC
Confidence               99999998877766

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=92.01  E-value=2  Score=37.15  Aligned_cols=88  Identities=13%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      ++++.+.+.   |+..=+|..     +.++..++++.+.+.|+..|.+.-++.               ...+.+..+++.
T Consensus         4 ~~~~~l~~~---~~~~v~r~~-----~~~~~~~~~~~~~~~Gv~~vqlr~k~~---------------~~~e~~~~~~~~   60 (187)
T PRK07455          4 DWLAQLQQH---RAIAVIRAP-----DLELGLQMAEAVAAGGMRLIEITWNSD---------------QPAELISQLREK   60 (187)
T ss_pred             HHHHHHHhC---CEEEEEEcC-----CHHHHHHHHHHHHHCCCCEEEEeCCCC---------------CHHHHHHHHHHh
Confidence            344455443   455556752     233578899999999999999977653               234667777776


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      . ..-.++.|-+.+.+++...++. ||+|+++-
T Consensus        61 ~-~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~   92 (187)
T PRK07455         61 L-PECIIGTGTILTLEDLEEAIAAGAQFCFTPH   92 (187)
T ss_pred             C-CCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence            6 4556888999999999999987 99998874

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=92.00  E-value=0.89  Score=42.43  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+.++++.+.+.|++.|.+-|-|+...-+|..       -..+.++.+++.+ .++|||+.-|=.+.+++.++-+   
T Consensus        24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~e-------Er~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~   96 (299)
T COG0329          24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLE-------ERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAE   96 (299)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHH-------HHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHH
Confidence            4578889999999999999999888633333211       1223455555544 2489887655555566665553   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  +||+|+-...|..|.
T Consensus        97 ~~Gad~il~v~PyY~k~~  114 (299)
T COG0329          97 KLGADGILVVPPYYNKPS  114 (299)
T ss_pred             hcCCCEEEEeCCCCcCCC
Confidence            2  999999999998886

>TIGR00433 bioB biotin synthetase

Probab=91.84  E-value=9.4  Score=35.02  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS  143 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~  143 (311)
                      ++.+.++|++.|-++.= -.+.+.+.-.+   -.+.+...+.++.+++. +++|.+-+=+|..+  +.++..+.+..+.+
T Consensus       126 l~~Lk~aG~~~v~i~~E-~~~~~~~~i~~---~~s~~~~~~ai~~l~~~-Gi~v~~~~i~Gl~e--t~~d~~~~~~~l~~  198 (296)
T TIGR00433       126 AKRLKDAGLDYYNHNLD-TSQEFYSNIIS---THTYDDRVDTLENAKKA-GLKVCSGGIFGLGE--TVEDRIGLALALAN  198 (296)
T ss_pred             HHHHHHcCCCEEEEccc-CCHHHHhhccC---CCCHHHHHHHHHHHHHc-CCEEEEeEEEeCCC--CHHHHHHHHHHHHh
Confidence            45566777777666543 22222211111   13455666666666664 78877766666533  34567888888999


Q ss_pred             cCCCEEEEecCccccccCCCCcCCCCCcCcH-H---HHHHHHHhCCCCeEEEecCCC-CHHHHHH--HHhh-cCEEEEe
Q psy2386         144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKY-N---FVYNLKKDFPELEIIINGGIK-TKKEIDL--HLNY-IDGVMLG  214 (311)
Q Consensus       144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~---~i~~i~~~~~~ipvi~nGgI~-s~~da~~--~l~~-adgVmig  214 (311)
                      .|++.+.+|.-+. ..|. +-.+  .++.+. +   .+...+..+|+..|...|+=. ...+..+  .+.. ++++|+|
T Consensus       199 l~~~~i~l~~l~p-~~gT-~l~~--~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g  273 (296)
T TIGR00433       199 LPPESVPINFLVK-IKGT-PLAD--NKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFVG  273 (296)
T ss_pred             CCCCEEEeeeeEE-cCCC-ccCC--CCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEEc
Confidence            9999988775443 1120 0011  122343 3   333444445554454444443 2223322  3444 9999987

Catalyzes the last step of the biotin biosynthesis pathway.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=91.82  E-value=2.7  Score=39.66  Aligned_cols=91  Identities=8%  Similarity=-0.012  Sum_probs=67.2

Q ss_pred             CChHHHHHHHHHHhcc-ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386          97 TKPLLVSDCIKAMRDS-VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                      ..|+.+.+.++.+++. .+.|+.|.+- .+.....   ..+.++.+.+.++..+++++...                 +.
T Consensus        37 ~~~e~l~~~i~~~~~l~tdkPfGVnl~-~~~~~~~---~~~~l~vi~e~~v~~V~~~~G~P-----------------~~   95 (320)
T cd04743          37 MRGEQVKALLEETAELLGDKPWGVGIL-GFVDTEL---RAAQLAVVRAIKPTFALIAGGRP-----------------DQ   95 (320)
T ss_pred             CCHHHHHHHHHHHHHhccCCCeEEEEe-ccCCCcc---hHHHHHHHHhcCCcEEEEcCCCh-----------------HH
Confidence            3689999999999995 6899999884 3432221   24567777899999998875431                 12


Q ss_pred             HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                       +.++++.  .+.|+  .-+.|++.++++.+. ||+|++
T Consensus        96 -~~~lk~~--Gi~v~--~~v~s~~~A~~a~~~GaD~vVa  129 (320)
T cd04743          96 -ARALEAI--GISTY--LHVPSPGLLKQFLENGARKFIF  129 (320)
T ss_pred             -HHHHHHC--CCEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence             5677764  68877  668999999998877 999886

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=91.80  E-value=0.72  Score=41.87  Aligned_cols=96  Identities=11%  Similarity=0.126  Sum_probs=68.4

Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEE---EEe------cCccccccCCCCcCCCCC-cCcHHHHHHHHHhCCCCeEEEec
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTF---IVH------ARNAFLKKLNPKQNRKIP-ILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~i---tvh------~Rt~~~~G~~g~~~~~~~-~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      |...-++.+.+.+.++.+.+.|+...   ..-      +||. ..+|.|.     + .--++++.++++.+ .+||+.  
T Consensus         8 GPCsvEs~e~~~~~A~~lk~~~~~~~~~~~fk~sf~KapRTs-p~sFqG~-----G~eeGL~iL~~vk~~~-glpvvT--   78 (258)
T TIGR01362         8 GPCVIESEDHALRVAEKLKELTSKLGVPFIFKSSFDKANRSS-IHSFRGP-----GLEEGLKILQKVKEEF-GVPILT--   78 (258)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHhcCCCeEEecccCCCCCCC-CCCCCCC-----CHHHHHHHHHHHHHHh-CCceEE--
Confidence            33444455567888888888765432   222      6664 2223222     1 12478899999998 899988  


Q ss_pred             CCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhH
Q psy2386         194 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       194 gI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~  228 (311)
                      +|.+++++....+.+|.++||-=++.|-.+...+.
T Consensus        79 eV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g  113 (258)
T TIGR01362        79 DVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAA  113 (258)
T ss_pred             EeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHh
Confidence            99999999999888999999988888877776654

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>TIGR03586 PseI pseudaminic acid synthase

Probab=91.75  E-value=7.7  Score=36.73  Aligned_cols=113  Identities=12%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+++.+..+.+++.|.+.+--           .+|+|.-|     .||.-++|..++..+.+     .++||.+|.-.. 
T Consensus        76 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~K-----I~S~~~~n~~LL~~va~-----~gkPvilstG~~-  144 (327)
T TIGR03586        76 WEWHKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYK-----IASFEITDLPLIRYVAK-----TGKPIIMSTGIA-  144 (327)
T ss_pred             HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEE-----ECCccccCHHHHHHHHh-----cCCcEEEECCCC-
Confidence            466677777788888665432           35677766     46667789888776543     489999876542 


Q ss_pred             CCCCcHHHHHHHHHHHHHcCC-CEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         126 DDINSYDFVRDFVGTVSSAGC-RTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~-~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                          +.+++...+..+.+.|. +.+.+|+ +..|.  +     ....+|+..|..+++.+ ++||..++
T Consensus       145 ----t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP--~-----~~~~~nL~~i~~lk~~f-~~pVG~SD  200 (327)
T TIGR03586       145 ----TLEEIQEAVEACREAGCKDLVLLKC-TSSYP--A-----PLEDANLRTIPDLAERF-NVPVGLSD  200 (327)
T ss_pred             ----CHHHHHHHHHHHHHCCCCcEEEEec-CCCCC--C-----CcccCCHHHHHHHHHHh-CCCEEeeC
Confidence                23456777788889998 4566785 32221  1     12236899999999998 79997764

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=91.74  E-value=7.7  Score=34.82  Aligned_cols=78  Identities=17%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      +.++..+.++.+.++|++.||+-.+.|.+.+       .++.++   .++++.+++.. +.++.+=+|.+          
T Consensus        17 s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-------p~~~~~---~~~i~~l~~~~~~~~~~~l~~~~----------   76 (265)
T cd03174          17 STEDKLEIAEALDEAGVDSIEVGSGASPKAV-------PQMEDD---WEVLRAIRKLVPNVKLQALVRNR----------   76 (265)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCcCcccc-------ccCCCH---HHHHHHHHhccCCcEEEEEccCc----------
Confidence            6788888899999999999999988876543       233333   45566666654 45554444432          


Q ss_pred             HHHHHHHHHcCCCEEEEec
Q psy2386         135 RDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~  153 (311)
                      .+.++.+.++|++.|.+..
T Consensus        77 ~~~i~~a~~~g~~~i~i~~   95 (265)
T cd03174          77 EKGIERALEAGVDEVRIFD   95 (265)
T ss_pred             hhhHHHHHhCCcCEEEEEE
Confidence            3567888999999998753

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PLN02417 dihydrodipicolinate synthase

Probab=91.71  E-value=3.5  Score=37.96  Aligned_cols=85  Identities=7%  Similarity=-0.095  Sum_probs=58.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-+..-..+.-.++++.+.+.+  .+||.+-+-.    .+ .+
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gi~~~----------GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~----~~-t~   83 (280)
T PLN02417         19 FDLEAYDSLVNMQIENGAEGLIVG----------GTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS----NS-TR   83 (280)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC----cc-HH
Confidence            477888888998888999999887          2234444444554456666665554  3677664332    11 23


Q ss_pred             HHHHHHHHHHHcCCCEEEEecC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      +.+++++.++++|+|++.+.+-
T Consensus        84 ~~i~~a~~a~~~Gadav~~~~P  105 (280)
T PLN02417         84 EAIHATEQGFAVGMHAALHINP  105 (280)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCC
Confidence            6789999999999999988654

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=91.62  E-value=9  Score=33.71  Aligned_cols=100  Identities=15%  Similarity=0.197  Sum_probs=64.5

Q ss_pred             EEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          50 FQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      +.|+|- ++++.    +.+.++|+|.|=+.+--+++.          .=+++.+.+|++.+...+ .+|.|-...     
T Consensus         3 vKICGit~~eda----~~~~~~GaD~iGfIf~~~SpR----------~V~~~~a~~i~~~~~~~~-~~VgVf~~~-----   62 (207)
T PRK13958          3 LKFCGFTTIKDV----TAASQLPIDAIGFIHYEKSKR----------HQTITQIKKLASAVPNHI-DKVCVVVNP-----   62 (207)
T ss_pred             EEEcCCCcHHHH----HHHHHcCCCEEEEecCCCCcc----------cCCHHHHHHHHHhCCCCC-CEEEEEeCC-----
Confidence            678885 44544    345578999998875433332          135788888888775432 234443221     


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                       +   ..++.+.++..|.|.|.+||-.                 +.+++.++++..|.++++
T Consensus        63 -~---~~~i~~~~~~~~~d~vQLHG~e-----------------~~~~~~~l~~~~~~~~ii  103 (207)
T PRK13958         63 -D---LTTIEHILSNTSINTIQLHGTE-----------------SIDFIQEIKKKYSSIKII  103 (207)
T ss_pred             -C---HHHHHHHHHhCCCCEEEECCCC-----------------CHHHHHHHhhcCCCceEE
Confidence             1   3466777789999999999853                 346788888765456665

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=91.61  E-value=0.3  Score=41.92  Aligned_cols=67  Identities=13%  Similarity=0.210  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      +..-.+.+++...|++-+-+..                 --..++++++.+ ++|||+.|=|.+.+|+.++++. |++|.
T Consensus       106 l~~~~~~i~~~~PD~vEilPg~-----------------~p~vi~~i~~~~-~~PiIAGGLI~~~e~v~~al~aGa~aVS  167 (175)
T PF04309_consen  106 LETGIKQIEQSKPDAVEILPGV-----------------MPKVIKKIREET-NIPIIAGGLIRTKEDVEEALKAGADAVS  167 (175)
T ss_dssp             HHHHHHHHHHHT-SEEEEESCC-----------------HHHHHCCCCCCC-SS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred             HHHHHHHHhhcCCCEEEEchHH-----------------HHHHHHHHHHhc-CCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence            4455677888999999886542                 235678888887 7999999999999999999987 99999


Q ss_pred             Eehhhh
Q psy2386         213 LGREAY  218 (311)
Q Consensus       213 igRa~l  218 (311)
                      ...--+
T Consensus       168 TS~~~L  173 (175)
T PF04309_consen  168 TSNKEL  173 (175)
T ss_dssp             E--HHH
T ss_pred             cCChHh
Confidence            876544

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>KOG0538|consensus

Probab=91.44  E-value=1.3  Score=41.28  Aligned_cols=51  Identities=22%  Similarity=0.396  Sum_probs=40.7

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE----ehhhhhCCc
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML----GREAYKNPF  222 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi----gRa~l~~P~  222 (311)
                      +..+|+.|+.++... ++||+.-| |.+.+||....+. ++|+++    ||.+=.-|.
T Consensus       208 ~Sl~W~Di~wLr~~T-~LPIvvKG-ilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpA  263 (363)
T KOG0538|consen  208 PSLSWKDIKWLRSIT-KLPIVVKG-VLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPA  263 (363)
T ss_pred             CCCChhhhHHHHhcC-cCCeEEEe-ecccHHHHHHHHhCCceEEEeCCCccccCcccc
Confidence            346899999999987 89988765 7788999999987 999999    455544444

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=91.43  E-value=4.8  Score=35.62  Aligned_cols=91  Identities=12%  Similarity=0.106  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++.+.++++.+++..+.|+.+.+.......    ...++++.+.++|++.|++++..                 ..+++
T Consensus        37 ~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~----~~~~~~~~~~~~g~d~v~l~~~~-----------------~~~~~   95 (236)
T cd04730          37 TPEALRAEIRKIRALTDKPFGVNLLVPSSNP----DFEALLEVALEEGVPVVSFSFGP-----------------PAEVV   95 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEeEecCCCCc----CHHHHHHHHHhCCCCEEEEcCCC-----------------CHHHH
Confidence            5778888888888765567666655532111    13578888999999999997541                 23556


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +++++.  +++++..  +.+.+++.++.+. +|++.+
T Consensus        96 ~~~~~~--~i~~i~~--v~~~~~~~~~~~~gad~i~~  128 (236)
T cd04730          96 ERLKAA--GIKVIPT--VTSVEEARKAEAAGADALVA  128 (236)
T ss_pred             HHHHHc--CCEEEEe--CCCHHHHHHHHHcCCCEEEE
Confidence            666653  5787764  6788888877665 898876

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=91.40  E-value=2.4  Score=39.80  Aligned_cols=94  Identities=15%  Similarity=0.228  Sum_probs=61.1

Q ss_pred             CCCCCeEEEec-C-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          43 AEEHPIAFQVG-D-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        43 ~~~~p~~~Ql~-g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      +.+.||.+-+. | .+.+.+.+.++.++++|+|.|.++.+.+.     .+|.+... |+    +.++.+++.+++||..-
T Consensus       131 ~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~-----~~y~g~~~-~~----~~i~~ik~~~~iPVi~n  200 (312)
T PRK10550        131 PAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKE-----DGYRAEHI-NW----QAIGEIRQRLTIPVIAN  200 (312)
T ss_pred             CCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCc-----cCCCCCcc-cH----HHHHHHHhhcCCcEEEe
Confidence            34679998864 3 44566889999999999999999965432     23322111 34    45666777778898652


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                         |.-.  +   ..+..+.++..|+|.|.+ ||-
T Consensus       201 ---GdI~--t---~~da~~~l~~~g~DgVmi-GRg  226 (312)
T PRK10550        201 ---GEIW--D---WQSAQQCMAITGCDAVMI-GRG  226 (312)
T ss_pred             ---CCcC--C---HHHHHHHHhccCCCEEEE-cHH
Confidence               2111  1   234556667899999987 664

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=91.37  E-value=5.4  Score=37.93  Aligned_cols=162  Identities=12%  Similarity=0.116  Sum_probs=80.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec-------cCCCccccccCcccCcccC-----ChHHHHHHHHHHhcc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN-------CGCPSNRVQNGFFGAILMT-----KPLLVSDCIKAMRDS  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~G~~Ll~-----~~~~~~~iv~~v~~~  112 (311)
                      ..|+++ =.|  .....+..+.+.+.|+.+|.+-       .|-|.+.+.......++++     ++. +...++.+++.
T Consensus        59 ~nPi~~-AsG--~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g-~~~~~~~l~~~  134 (344)
T PRK05286         59 PNPVGL-AAG--FDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDG-ADALAERLKKA  134 (344)
T ss_pred             CCCCEE-CCC--CCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHh-HHHHHHHHHHh
Confidence            356654 223  3345566677888999999985       3445554432111122332     321 34444445443


Q ss_pred             -ccceeEEEEecc--CCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--
Q psy2386         113 -VEIDITVKHRIG--IDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--  185 (311)
Q Consensus       113 -~~~pvsvKiR~g--~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~--  185 (311)
                       .++||.|-+--.  .+.....+++.+.++.+.+ ++|+|.+-  +..  ..|.   .....+..-.+.++++++.+.  
T Consensus       135 ~~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~--~~g~---~~~~~~~~~~eiv~aVr~~~~~~  208 (344)
T PRK05286        135 YRGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPN--TPGL---RDLQYGEALDELLAALKEAQAEL  208 (344)
T ss_pred             cCCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCC--CCCc---ccccCHHHHHHHHHHHHHHHhcc
Confidence             578887766321  1112233445555555544 49999863  111  1110   000111122366777887763  


Q ss_pred             --CCeEEE--ecCCCC--HHHHHHHHhh--cCEEEEehh
Q psy2386         186 --ELEIII--NGGIKT--KKEIDLHLNY--IDGVMLGRE  216 (311)
Q Consensus       186 --~ipvi~--nGgI~s--~~da~~~l~~--adgVmigRa  216 (311)
                        ++||+.  +-++..  ..++.+.++.  +|+|.+--.
T Consensus       209 ~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt  247 (344)
T PRK05286        209 HGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNT  247 (344)
T ss_pred             ccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCC
Confidence              288863  334432  3334444433  999988533

>PRK08444 hypothetical protein; Provisional

Probab=91.32  E-value=3.1  Score=39.82  Aligned_cols=127  Identities=13%  Similarity=0.130  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-----------ec
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-----------RI  123 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-----------R~  123 (311)
                      -+++++.+.|+.+.+.|+..|-|-.|..-.            .+.+.+.++++.+++... .+.++.           ..
T Consensus        80 ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~------------~~~e~y~e~ir~Ik~~~p-~i~i~a~s~~Ei~~~a~~~  146 (353)
T PRK08444         80 MSHEEILEIVKNSVKRGIKEVHIVSAHNPN------------YGYEWYLEIFKKIKEAYP-NLHVKAMTAAEVDFLSRKF  146 (353)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeccCCCC------------CCHHHHHHHHHHHHHHCC-CceEeeCCHHHHHHHHHHc
Confidence            489999999999999999999998553211            256889999999998631 266664           33


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc-----ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE---EecCC
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL-----KKLNPKQNRKIPILKYNFVYNLKKDFPELEII---INGGI  195 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~-----~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi---~nGgI  195 (311)
                      |..       ..+.++.|.++|++.+. |+.-..+     .-.++.   .....+|..+.+.+... .+++-   .-|=+
T Consensus       147 g~~-------~~e~l~~LkeAGl~~~~-g~~aEi~~~~vr~~I~p~---k~~~~~~~~i~~~a~~~-Gi~~~sg~l~G~g  214 (353)
T PRK08444        147 GKS-------YEEVLEDMLEYGVDSMP-GGGAEIFDEEVRKKICKG---KVSSERWLEIHKYWHKK-GKMSNATMLFGHI  214 (353)
T ss_pred             CCC-------HHHHHHHHHHhCcccCC-CCCchhcCHHHHhhhCCC---CCCHHHHHHHHHHHHHc-CCCccceeEEecC
Confidence            332       35788999999999653 2111111     222322   11123566665544444 56653   33555


Q ss_pred             CCHHHHHHHHh
Q psy2386         196 KTKKEIDLHLN  206 (311)
Q Consensus       196 ~s~~da~~~l~  206 (311)
                      .|++|-.+++.
T Consensus       215 Et~edrv~hl~  225 (353)
T PRK08444        215 ENREHRIDHML  225 (353)
T ss_pred             CCHHHHHHHHH
Confidence            89999888875

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=91.30  E-value=4.6  Score=35.67  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=77.1

Q ss_pred             EEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          50 FQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      +-|||- ++++.    +.+.++|+|.+=+=+-=+++..          -+++.+.+|++++.. +. .|.|-..      
T Consensus         4 vKICGlt~~eda----~~a~~~gad~iG~If~~~SpR~----------Vs~~~a~~i~~~v~~-~~-~VgVf~n------   61 (208)
T COG0135           4 VKICGLTRLEDA----KAAAKAGADYIGFIFVPKSPRY----------VSPEQAREIASAVPK-VK-VVGVFVN------   61 (208)
T ss_pred             eEECCCCCHHHH----HHHHHcCCCEEEEEEcCCCCCc----------CCHHHHHHHHHhCCC-CC-EEEEECC------
Confidence            445664 35544    4455789998877655544431          357888999888765 21 3444322      


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH---HHHHH
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE---IDLHL  205 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d---a~~~l  205 (311)
                      .+   ..++.+.+++.+.+.|.+||-.                 +.+++.++++.. ++||+-.=.+.+..+   +....
T Consensus        62 ~~---~~~i~~i~~~~~ld~VQlHG~e-----------------~~~~~~~l~~~~-~~~v~kai~v~~~~~~~~~~~~~  120 (208)
T COG0135          62 ES---IEEILEIAEELGLDAVQLHGDE-----------------DPEYIDQLKEEL-GVPVIKAISVSEEGDLELAAREE  120 (208)
T ss_pred             CC---HHHHHHHHHhcCCCEEEECCCC-----------------CHHHHHHHHhhc-CCceEEEEEeCCccchhhhhhcc
Confidence            22   3467778899999999999863                 678899999886 567654444443322   11111


Q ss_pred             hhcCEEEEeh
Q psy2386         206 NYIDGVMLGR  215 (311)
Q Consensus       206 ~~adgVmigR  215 (311)
                      ..+|.+++=.
T Consensus       121 ~~~d~~LlDa  130 (208)
T COG0135         121 GPVDAILLDA  130 (208)
T ss_pred             CCccEEEEcC
Confidence            2288888744

>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2

Probab=91.15  E-value=7.8  Score=35.45  Aligned_cols=143  Identities=14%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEE
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKi  121 (311)
                      +.++++=+-=.| |+.+..+|+.+. ..|+|.|-+|.           +++     .+-+...++...+. ..+-|+|++
T Consensus        86 g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~-----------~~G-----~d~l~~~~~~~~~~~~~v~VlvlT  149 (261)
T TIGR02127        86 GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSP-----------YLG-----LDSLRPFLEYARANGAGIFVLVKT  149 (261)
T ss_pred             CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECC-----------cCC-----HHHHHHHHHHHhhcCCEEEEEEeC
Confidence            457777776555 456777776555 78999999992           222     23344444443321 245677777


Q ss_pred             ec-cCCC-------C--CcHHHHHHHHHHHHHc----CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         122 RI-GIDD-------I--NSYDFVRDFVGTVSSA----GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       122 R~-g~~~-------~--~~~~~~~e~~~~l~~~----G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      .. +..+       .  .-++...++++.+.+.    |.+.+.+ |-|.                 -+.++++++.+|+.
T Consensus       150 Snp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~-gAT~-----------------p~e~~~iR~~~~~~  211 (261)
T TIGR02127       150 SNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVV-GATS-----------------PGDLLRLRIEMPTA  211 (261)
T ss_pred             CCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEE-CCCC-----------------HHHHHHHHHhCCCC
Confidence            65 3111       0  1123444555555443    5666655 3331                 24577777776677


Q ss_pred             eEEEec----CCCCHHHHHHHHhh--cC-EEEEehhhhhCCc
Q psy2386         188 EIIING----GIKTKKEIDLHLNY--ID-GVMLGREAYKNPF  222 (311)
Q Consensus       188 pvi~nG----gI~s~~da~~~l~~--ad-gVmigRa~l~~P~  222 (311)
                      +++.=|    | .+.+|..+.+..  ++ .+.+||+++.-+.
T Consensus       212 ~il~PGigaqG-~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~  252 (261)
T TIGR02127       212 PFLVPGFGAQG-AEAADLRGLFGADGSGLLINSSRGVLFAGP  252 (261)
T ss_pred             eEEeCCcCCCC-CCHHHHHHHhcccCCCEEEEcCHHHhcCCC
Confidence            665433    2 367888776642  77 7999999865443

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=91.12  E-value=16  Score=37.54  Aligned_cols=270  Identities=10%  Similarity=0.090  Sum_probs=144.7

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceecccc------c-CCchhcccc---CCCCCCeEEEecCCC-------HHHHHH-HHH
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQAI------L-GNKKHCLDF---NAEEHPIAFQVGDNE-------PKKLAK-SAK   65 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~~l------~-~~~~~~l~~---~~~~~p~~~Ql~g~~-------~~~~~~-aa~   65 (311)
                      +...+..+|..+-.+++..-|+-.-..+      + .+.+++|+.   .-.+.|+-.=+-|.|       |+++.+ ..+
T Consensus        24 ~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~  103 (596)
T PRK14042         24 RTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVK  103 (596)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHH
Confidence            3444556666655555666666543332      1 123333321   223455555454443       555444 556


Q ss_pred             HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC
Q psy2386          66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG  145 (311)
Q Consensus        66 ~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G  145 (311)
                      .+.+.|.|.+-|=-               -+++.+.+..-++++++. +.-+-.-|..-.+...+.+.+.++++.+++.|
T Consensus       104 ~a~~~Gidv~Rifd---------------~lnd~~n~~~~i~~~k~~-G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~G  167 (596)
T PRK14042        104 LAVNNGVDVFRVFD---------------ALNDARNLKVAIDAIKSH-KKHAQGAICYTTSPVHTLDNFLELGKKLAEMG  167 (596)
T ss_pred             HHHHcCCCEEEEcc---------------cCcchHHHHHHHHHHHHc-CCEEEEEEEecCCCCCCHHHHHHHHHHHHHcC
Confidence            77888988887732               247788888888888875 44333332222233445667899999999999


Q ss_pred             CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHhhcCEEEE-----ehh
Q psy2386         146 CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLNYIDGVML-----GRE  216 (311)
Q Consensus       146 ~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~~adgVmi-----gRa  216 (311)
                      ++.|.+-.-.+    +.      .|..-.+++..+++.+ ++||-.-+    |.....-...+-.+||.|=.     |.+
T Consensus       168 ad~I~IkDtaG----~l------~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~  236 (596)
T PRK14042        168 CDSIAIKDMAG----LL------TPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGG  236 (596)
T ss_pred             CCEEEeCCccc----CC------CHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCC
Confidence            99998854322    11      1223467899999988 69986554    33322222222223554432     222


Q ss_pred             hhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCc-ccHHHHHHhHHHHhccCCCcH--HHHHHHhC
Q psy2386         217 AYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKI-KNINSITRHMLGLMKNIKGSN--KFKQILSK  292 (311)
Q Consensus       217 ~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~k~~~~~~~g~~~~~--~~r~~l~~  292 (311)
                       .+||.+-.-+ ..+.+.+. ....+. +.+..+.+|+..... |... ......  -..-|.+.+||+-  .+++.+.+
T Consensus       237 -tGn~~tE~lv-~~L~~~g~-~tgidl-~~l~~~~~~~~~vr~~y~~~~~~~~~~--~~~v~~hq~PGG~~snl~~Ql~~  310 (596)
T PRK14042        237 -ASHPPTEALV-AALTDTPY-DTELDL-NILLEIDDYFKAVRKKYSQFESEAQNI--DPRVQLYQVPGGMISNLYNQLKE  310 (596)
T ss_pred             -CCcHhHHHHH-HHHHhcCC-CCCCCH-HHHHHHHHHHHHHHHHHhhcCCccccC--CcceeecCCCcchhhHHHHHHHH
Confidence             3677654322 22322221 123443 445555566655443 2100 000000  1122456788853  67777877


Q ss_pred             CCCCCCChHHHHHHh
Q psy2386         293 PNLLTIDNFQFFLNT  307 (311)
Q Consensus       293 ~~~~~~~~~~~l~~~  307 (311)
                      ..... ...++++|+
T Consensus       311 ~g~~d-~~~ev~~e~  324 (596)
T PRK14042        311 QNALD-KMDAVHKEI  324 (596)
T ss_pred             CCcHh-HHHHHHHHH
Confidence            77666 677777665

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=91.12  E-value=2.3  Score=36.26  Aligned_cols=94  Identities=19%  Similarity=0.247  Sum_probs=57.2

Q ss_pred             HHHHHHHHhcccc-c-eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHH
Q psy2386         102 VSDCIKAMRDSVE-I-DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVY  178 (311)
Q Consensus       102 ~~~iv~~v~~~~~-~-pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~  178 (311)
                      +.+.++++++..+ . ++.|-++.           .+-+..+.++|+|.|-+..-+.               .+. +.+.
T Consensus        66 i~~av~~~~~~~~~~~~I~VEv~~-----------~ee~~ea~~~g~d~I~lD~~~~---------------~~~~~~v~  119 (169)
T PF01729_consen   66 IEEAVKAARQAAPEKKKIEVEVEN-----------LEEAEEALEAGADIIMLDNMSP---------------EDLKEAVE  119 (169)
T ss_dssp             HHHHHHHHHHHSTTTSEEEEEESS-----------HHHHHHHHHTT-SEEEEES-CH---------------HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCceEEEEcCC-----------HHHHHHHHHhCCCEEEecCcCH---------------HHHHHHHH
Confidence            4566666666542 2 35554432           2335566779999998754321               122 3344


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +++...+++.+.++|||+ ++.+.++.+. +|.+.+|...+.=|+
T Consensus       120 ~l~~~~~~v~ie~SGGI~-~~ni~~ya~~gvD~isvg~~~~~a~~  163 (169)
T PF01729_consen  120 ELRELNPRVKIEASGGIT-LENIAEYAKTGVDVISVGSLTHSAPP  163 (169)
T ss_dssp             HHHHHTTTSEEEEESSSS-TTTHHHHHHTT-SEEEECHHHHSBE-
T ss_pred             HHhhcCCcEEEEEECCCC-HHHHHHHHhcCCCEEEcChhhcCCcc
Confidence            454455678999999996 5777777766 999999987665554

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=90.99  E-value=8.7  Score=35.52  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=78.2

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEec-------cCCCccccccCcc---cCcccCC--hHHHHHHHHHHhccccceeEEE
Q psy2386          53 GDNEPKKLAKSAKIIQKWGYDEINLN-------CGCPSNRVQNGFF---GAILMTK--PLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        53 ~g~~~~~~~~aa~~~~~~g~d~IdiN-------~gCP~~~v~~~~~---G~~Ll~~--~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      +|.+.+.+..    +.+.|+.+|...       -|-|.|...+...   .+.-+.+  .+...+.+....+..+.|+.+-
T Consensus        21 ~~~~~~~~~~----~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~~~~~~~~pl~~q   96 (300)
T TIGR01037        21 MGSGVESLRR----IDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKPVREEFPTPLIAS   96 (300)
T ss_pred             CCCCHHHHHH----HHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHHHhccCCCcEEEE
Confidence            4666565543    334589998883       2223333222111   0111222  3443444444444456788877


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe--cCCC
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN--GGIK  196 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n--GgI~  196 (311)
                      +. |.+    .+++.+.++.+++++  +++|.+----....|+ |..-...+..-++.+.++++.+ ++||..=  .++.
T Consensus        97 i~-g~~----~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~-g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~  169 (300)
T TIGR01037        97 VY-GSS----VEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGG-GIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVT  169 (300)
T ss_pred             ee-cCC----HHHHHHHHHHHHhccCccCEEEEECCCCCCCCC-ccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChh
Confidence            64 222    335788899999874  9999874211111121 1100111112356788888877 6888644  3443


Q ss_pred             CHHHHHHHHhh--cCEEEEe
Q psy2386         197 TKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       197 s~~da~~~l~~--adgVmig  214 (311)
                      +..++.+.++.  +|++.+.
T Consensus       170 ~~~~~a~~l~~~G~d~i~v~  189 (300)
T TIGR01037       170 DITEIAKAAEEAGADGLTLI  189 (300)
T ss_pred             hHHHHHHHHHHcCCCEEEEE
Confidence            44444444543  9999873

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK13753 dihydropteroate synthase; Provisional

Probab=90.96  E-value=1.7  Score=40.12  Aligned_cols=59  Identities=12%  Similarity=0.165  Sum_probs=38.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +++...+-|+.+.+.|+|.|||..-.-.|       |+...   ...+++..+++++++. ++||||-..
T Consensus        23 ~~d~a~~~a~~m~~~GAdIIDIGgeSTrP-------ga~~vs~eeE~~Rv~pvI~~l~~~-~~~ISIDT~   84 (279)
T PRK13753         23 DPAGAVTAAIEMLRVGSDVVDVGPAASHP-------DARPVSPADEIRRIAPLLDALSDQ-MHRVSIDSF   84 (279)
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCCCCCC-------CCCcCCHHHHHHHHHHHHHHHHhC-CCcEEEECC
Confidence            67777777777777899999997433212       22222   2345666888888765 678888643

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=90.95  E-value=1.2  Score=41.73  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+.++++.+.+.|++.|.+-|-|+....++-.       -..+.++.+++.+. ++|||+.=+=.+.+++.++.+.  
T Consensus        28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~e-------Er~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~  100 (309)
T cd00952          28 LDETARLVERLIAAGVDGILTMGTFGECATLTWE-------EKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL  100 (309)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcccccchhCCHH-------HHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence            4567888999999999999998887633333211       11234555555442 4898877666666777766642  


Q ss_pred             ---cCEEEEehhhhhCC
Q psy2386         208 ---IDGVMLGREAYKNP  221 (311)
Q Consensus       208 ---adgVmigRa~l~~P  221 (311)
                         +|+||+--..+..|
T Consensus       101 ~~Gad~vlv~~P~y~~~  117 (309)
T cd00952         101 DLGADGTMLGRPMWLPL  117 (309)
T ss_pred             HhCCCEEEECCCcCCCC
Confidence               99999999887666

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	311
3b0p_A	350	Trna-Dihydrouridine Synthase From Thermus Thermophi		1e-62
3b0v_C	363	Trna-Dihydrouridine Synthase From Thermus Thermophi		1e-58
1vhn_A	318	Crystal Structure Of A Putative Flavin Oxidoreducta		1e-09

>pdb|3B0P|A Chain A, Trna-Dihydrouridine Synthase From Thermus Thermophilus Length = 350

Iteration: 1
 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 183/290 (63%), Gaps = 7/290 (2%)
Query: 4   TDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAK 62
           TDRH R   RQ++    LYTEM   QA+L GN++  L F  EEHPIA Q+  ++PK LA+
Sbjct: 15  TDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKSLAE 74
Query: 63  SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122
           +A+I + +GYDEINLN GCPS + Q G +GA L+     V + +KAM ++V + +TVK R
Sbjct: 75  AARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR 134
Query: 123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK 182
           +G++   +Y  +   V  ++ AG + F+VHAR+A L  L+ K NR+IP L++++V+ LK 
Sbjct: 135 LGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHRLKG 193
Query: 183 DFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPT 242
           DFP+L  + NGGI++ +E   HL  +DGVMLGR  Y++PF++   D   +  LP+   P+
Sbjct: 194 DFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVF-GLPRR--PS 250
Query: 243 RIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
           R+++  RM  Y+ +++         ++ RHML L +       ++++LS+
Sbjct: 251 RLEVARRMRAYLEEEV--LKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSE 298

>pdb|3B0V|C Chain C, Trna-Dihydrouridine Synthase From Thermus Thermophilus In Complex With Trna Length = 363

Iteration: 1
 Score =  223 bits (568), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/293 (37%), Positives = 179/293 (61%), Gaps = 7/293 (2%)
Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           ++ TDRH R   RQ++    LYTE    QA+L GN++  L F  EEHPIA Q+  ++PK 
Sbjct: 33  VDRTDRHFRFLVRQVSLGVRLYTEXTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKS 92
Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++A+I + +GYDEINLN GCPS + Q G +GA L+     V + +KA  ++V + +TV
Sbjct: 93  LAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAXGEAVRVPVTV 152
Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           K R+G++   +Y  +   V   + AG + F+VHAR+A L  L+ K NR+IP L++++V+ 
Sbjct: 153 KXRLGLEGKETYRGLAQSVEAXAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHR 211
Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK DFP+L  + NGGI++ +E   HL  +DGV LGR  Y++PF++   D   +  LP+  
Sbjct: 212 LKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVXLGRAVYEDPFVLEEADRRVF-GLPRR- 269
Query: 240 IPTRIDIINRMILYIRQQLXXXXXXXXXSITRHMLGLMKNIKGSNKFKQILSK 292
            P+R+++  R   Y+ +++         ++ RH L L +       ++++LS+
Sbjct: 270 -PSRLEVARRXRAYLEEEV--LKGTPPWAVLRHXLNLFRGRPKGRLWRRLLSE 319

>pdb|1VHN|A Chain A, Crystal Structure Of A Putative Flavin Oxidoreductase With Flavin Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/288 (20%), Positives = 120/288 (41%), Gaps = 23/288 (7%)
Query: 22  YTEMFTTQAILGNKKHCLDFNAEEHP--IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC 79
           ++E  + +  L N +   +   + H   +A Q+  +EP +L+++A+I+ +  Y  I+LN 
Sbjct: 33  FSEXVSAKGFLXNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLNA 91
Query: 80  GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG 139
           GCP  +V     G  L+         ++ +R SV    +VK R+G +     +  R  V 
Sbjct: 92  GCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYRILV- 150
Query: 140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK 199
                G     +H R          + + + +        L+K  P     ++G I T +
Sbjct: 151 ---EEGVDEVFIHTRTVVQSFTGRAEWKALSV--------LEKRIP---TFVSGDIFTPE 196
Query: 200 EID--LHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQ 257
           +    L  +  DG+++ R A   P++     +  +    +Y  P+R +I+     ++   
Sbjct: 197 DAKRALEESGCDGLLVARGAIGRPWIFKQ--IKDFLRSGKYSEPSREEILRTFERHLELL 254
Query: 258 LXXXXXXXXXSITRHML-GLMKNIKGSNKFKQILSKPNLLTIDNFQFF 304
           +            R  L G  K++KG+ +F++ + K   + I    F+
Sbjct: 255 IKTKGERKAVVEXRKFLAGYTKDLKGARRFREKVXKIEEVQILKEXFY 302

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	311
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	1e-167
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	9e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* Length = 350

 Score =  467 bits (1205), Expect = e-167
 Identities = 114/292 (39%), Positives = 182/292 (62%), Gaps = 7/292 (2%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKK 59
           ++ TDRH R   RQ++    LYTEM   QA+L GN++  L F  EEHPIA Q+  ++PK 
Sbjct: 12  VDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKS 71

Query: 60  LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV 119
           LA++A+I + +GYDEINLN GCPS + Q G +GA L+     V + +KAM ++V + +TV
Sbjct: 72  LAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTV 131

Query: 120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN 179
           K R+G++   +Y  +   V  ++ AG + F+VHAR+A L  L+ K NR+IP L++++V+ 
Sbjct: 132 KMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALL-ALSTKANREIPPLRHDWVHR 190

Query: 180 LKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK 239
           LK DFP+L  + NGGI++ +E   HL  +DGVMLGR  Y++PF++   D   +      +
Sbjct: 191 LKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGL---PR 247

Query: 240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILS 291
            P+R+++  RM  Y+ +++         ++ RHML L +       ++++LS
Sbjct: 248 RPSRLEVARRMRAYLEEEVLKG--TPPWAVLRHMLNLFRGRPKGRLWRRLLS 297

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 Length = 318

 Score =  119 bits (301), Expect = 9e-32
 Identities = 58/286 (20%), Positives = 121/286 (42%), Gaps = 39/286 (13%)

Query: 20  WLYTEMFTTQAIL-GNKK-HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL 77
           + ++EM + +  L  ++K   L     E  +A Q+  +EP +L+++A+I+ +  Y  I+L
Sbjct: 31  FAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDL 89

Query: 78  NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF 137
           N GCP  +V     G  L+         ++ +R SV    +VK R+G +     +  R  
Sbjct: 90  NAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR-- 147

Query: 138 VGTVSSAGCRTFIVHAR--------NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI 189
              +   G     +H R         A                ++  +  L+K  P    
Sbjct: 148 --ILVEEGVDEVFIHTRTVVQSFTGRA----------------EWKALSVLEKRIP---T 186

Query: 190 IINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDII 247
            ++G I T ++    L     DG+++ R A   P++     +  +    +Y  P+R +I+
Sbjct: 187 FVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFK--QIKDFLRSGKYSEPSREEIL 244

Query: 248 NRMILYIRQQLNN-NKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
                ++   +    + K +  + + + G  K++KG+ +F++ + K
Sbjct: 245 RTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMK 290

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 46/348 (13%), Positives = 109/348 (31%), Gaps = 110/348 (31%)

Query: 5   DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSA 64
           +  C++     TR+  +     T         H    + + H +             +  
Sbjct: 263 NLSCKIL--LTTRFKQV-----TDFLSAATTTH---ISLDHHSMTLT--------PDEVK 304

Query: 65  KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG 124
            ++ K+      L+C       +      +L T P  +S   +++RD             
Sbjct: 305 SLLLKY------LDCRPQDLPRE------VLTTNPRRLSIIAESIRD------------- 339

Query: 125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR-------------KIP- 170
              + ++D  +          C         + L  L P + R              IP 
Sbjct: 340 --GLATWDNWKHV-------NCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 171 ----ILKYNFVYN--------------LKKDFPELEIIINGG-----IKTKKEIDLHLNY 207
               ++ ++ + +              ++K   E  I I        +K + E  LH + 
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449

Query: 208 IDGVMLGREAYKNPFLMSNFDLNYYSN-----LPQYKIPTRIDIINRMIL---YIRQQLN 259
           +D   + +    +  +    D  Y+ +     L   + P R+ +   + L   ++ Q++ 
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLD-QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 260 NNKI-KNINSITRHMLGLMKNIKG-----SNKFKQILSKPNLLTIDNF 301
           ++    N +    + L  +K  K        K++++++      I +F
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDF 551

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	311
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	100.0
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	100.0
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	100.0
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	100.0
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	99.98
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	99.97
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	99.97
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	99.97
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	99.97
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	99.97
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	99.97
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	99.97
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	99.97
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	99.97
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	99.96
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	99.96
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	99.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.95
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.95
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	99.95
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	99.95
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	99.95
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.95
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	99.95
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	99.94
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	99.94
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	99.94
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	99.92
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	99.91
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.9
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	99.89
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.89
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.88
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.87
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.85
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	99.81
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	99.77
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.77
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.76
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.76
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.76
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	99.75
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.71
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.7
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.69
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	99.68
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.62
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	99.62
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.62
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.61
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	99.61
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.61
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.6
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.59
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.58
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.57
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.56
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.55
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.53
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.5
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	99.44
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	99.38
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.36
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	99.34
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.31
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.3
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.3
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.29
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.29
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.28
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.25
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.24
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.24
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.21
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	99.21
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	99.2
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	99.2
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	99.17
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	99.17
3eez_A	378	Putative mandelate racemase/muconate lactonizing e	99.15
2p8b_A	369	Mandelate racemase/muconate lactonizing enzyme fam	99.14
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	99.13
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.13
2qdd_A	378	Mandelate racemase/muconate lactonizing enzyme; en	99.13
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.13
2hzg_A	401	Mandelate racemase/muconate lactonizing enzyme/EN	99.09
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.08
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.07
1rvk_A	382	Isomerase/lactonizing enzyme; enolase superfamily,	99.07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.06
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	99.05
1nu5_A	370	Chloromuconate cycloisomerase; enzyme, dehalogenat	99.04
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	99.02
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.02
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.01
1tkk_A	366	Similar to chloromuconate cycloisomerase; epimeras	99.0
2ps2_A	371	Putative mandelate racemase/muconate lactonizing e	98.99
3ozy_A	389	Putative mandelate racemase; beta-alpha barrel, en	98.98
2qgy_A	391	Enolase from the environmental genome shotgun sequ	98.97
2gl5_A	410	Putative dehydratase protein; structural genomics,	98.92
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	98.9
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	98.9
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	98.86
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	98.85
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	98.84
2qde_A	397	Mandelate racemase/muconate lactonizing enzyme FA	98.82
2ox4_A	403	Putative mandelate racemase; enolase, dehydratase,	98.81
2poz_A	392	Putative dehydratase; octamer, structural genomics	98.81
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.8
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	98.79
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.79
2og9_A	393	Mandelate racemase/muconate lactonizing enzyme; NY	98.79
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.78
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.78
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.78
3rcy_A	433	Mandelate racemase/muconate lactonizing enzyme-LI	98.78
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.76
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	98.76
2pp0_A	398	L-talarate/galactarate dehydratase; enolase superf	98.75
2o56_A	407	Putative mandelate racemase; dehydratase, structur	98.73
2qq6_A	410	Mandelate racemase/muconate lactonizing enzyme- li	98.73
3stp_A	412	Galactonate dehydratase, putative; PSI biology, st	98.72
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.72
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.71
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.7
2gdq_A	382	YITF; mandelate racemase/muconate lactonizing enzy	98.7
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	98.7
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.69
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	98.69
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.68
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.67
3rr1_A	405	GALD, putative D-galactonate dehydratase; enolase,	98.67
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	98.66
3sjn_A	374	Mandelate racemase/muconate lactonizing protein; e	98.66
3bjs_A	428	Mandelate racemase/muconate lactonizing enzyme; en	98.65
3i4k_A	383	Muconate lactonizing enzyme; structural genomics,	98.64
4e5t_A	404	Mandelate racemase / muconate lactonizing enzyme,	98.64
1tzz_A	392	Hypothetical protein L1841; structural genomics, m	98.64
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	98.62
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	98.62
4dwd_A	393	Mandelate racemase/muconate lactonizing enzyme, C	98.62
3sbf_A	401	Mandelate racemase / muconate lactonizing enzyme;	98.62
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.61
3ro6_B	356	Putative chloromuconate cycloisomerase; TIM barrel	98.61
3r4e_A	418	Mandelate racemase/muconate lactonizing enzyme; en	98.6
3jva_A	354	Dipeptide epimerase; enolase superfamily, isomeras	98.58
3oa3_A	288	Aldolase; structural genomics, seattle structural	98.57
4e4u_A	412	Mandalate racemase/muconate lactonizing enzyme; ma	98.55
1viz_A	240	PCRB protein homolog; structural genomics, unknown	98.54
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	98.54
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	98.53
2hxt_A	441	L-fuconate dehydratase; enolase superfamily, D-ery	98.52
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	98.49
1sjd_A	368	N-acylamino acid racemase; lyase, isomerase; HET:	98.48
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	98.48
3tji_A	422	Mandelate racemase/muconate lactonizing enzyme, N	98.47
3my9_A	377	Muconate cycloisomerase; structural genomics, PSI-	98.47
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	98.47
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	98.46
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	98.46
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	98.45
3ddm_A	392	Putative mandelate racemase/muconate lactonizing e	98.45
3q45_A	368	Mandelate racemase/muconate lactonizing enzyme FA	98.43
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	98.43
3tj4_A	372	Mandelate racemase; enolase, dehydratase, enzyme f	98.42
1chr_A	370	Chloromuconate cycloisomerase; 3.00A {Ralstonia eu	98.42
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	98.4
3fv9_G	386	Mandelate racemase/muconate lactonizing enzyme; st	98.4
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	98.4
3i6e_A	385	Muconate cycloisomerase I; structural genomics, NY	98.39
3toy_A	383	Mandelate racemase/muconate lactonizing enzyme FA	98.39
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.39
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	98.39
3ugv_A	390	Enolase; enzyme function initiative, EFI, lyase; 2	98.38
3dg3_A	367	Muconate cycloisomerase; muconate lactonizing enzy	98.36
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	98.36
1r0m_A	375	N-acylamino acid racemase; isomerase; 1.30A {Deino	98.35
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	98.35
3v3w_A	424	Starvation sensing protein RSPA; enolase, enzyme f	98.35
3vcn_A	425	Mannonate dehydratase; enolase, magnesium binding	98.35
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	98.34
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	98.34
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	98.34
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	98.31
2zc8_A	369	N-acylamino acid racemase; octamer, TIM beta/alpha	98.3
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	98.29
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	98.28
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.28
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	98.27
3r0u_A	379	Enzyme of enolase superfamily; structural genomics	98.27
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	98.25
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	98.25
3go2_A	409	Putative L-alanine-DL-glutamate epimerase; structu	98.24
4e8g_A	391	Enolase, mandelate racemase/muconate lactonizing e	98.24
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	98.23
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.22
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	98.21
3t6c_A	440	RSPA, putative MAND family dehydratase; enolase, m	98.21
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	98.2
3mwc_A	400	Mandelate racemase/muconate lactonizing protein; e	98.2
3mqt_A	394	Mandelate racemase/muconate lactonizing protein; P	98.18
3tcs_A	388	Racemase, putative; PSI-biology, nysgrc, structura	98.15
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.14
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	98.14
4e4f_A	426	Mannonate dehydratase; magnesium binding, enzyme f	98.12
3mkc_A	394	Racemase; metabolic process, PSI2, NYSGXRC, struct	98.12
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	98.09
3dgb_A	382	Muconate cycloisomerase; muconate lactonizing enzy	98.09
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	98.04
3p3b_A	392	Mandelate racemase/muconate lactonizing protein; e	98.0
4hnl_A	421	Mandelate racemase/muconate lactonizing enzyme; de	97.99
3fcp_A	381	L-Ala-D/L-Glu epimerase, A muconate lactonizing en	97.98
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.96
4a35_A	441	Mitochondrial enolase superfamily member 1; isomer	97.92
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	97.92
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	97.92
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.9
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	97.88
3ik4_A	365	Mandelate racemase/muconate lactonizing protein; s	97.87
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	97.85
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	97.85
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	97.83
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	97.77
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	97.75
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	97.74
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	97.73
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	97.72
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.72
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	97.71
3dip_A	410	Enolase; structural genomics, isomerase, PSI-2, pr	97.68
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.67
4dye_A	398	Isomerase; enolase family protein, EFI, enzym func	97.67
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	97.66
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	97.66
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	97.64
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	97.63
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	97.63
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	97.6
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	97.59
2pge_A	377	MENC; OSBS, NYSGXRC, PSI-II, structural genomics,	97.59
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	97.58
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.56
1wuf_A	393	Hypothetical protein LIN2664; structural genomics,	97.5
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	97.48
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	97.48
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	97.46
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	97.46
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	97.43
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	97.43
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	97.41
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	97.41
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	97.34
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	97.3
4dxk_A	400	Mandelate racemase / muconate lactonizing enzyme p	97.27
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	97.2
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	97.18
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	97.16
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	97.14
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	97.11
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	97.1
3s5s_A	389	Mandelate racemase/muconate lactonizing enzyme FA	97.09
3u9i_A	393	Mandelate racemase/muconate lactonizing enzyme, C	97.06
2chr_A	370	Chloromuconate cycloisomerase; 3.00A {Cupriavidus	97.04
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	97.03
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	97.02
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.94
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.87
4h83_A	388	Mandelate racemase/muconate lactonizing enzyme; st	96.87
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.86
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.84
2ozt_A	332	TLR1174 protein; structural genomics, O-succinylbe	96.82
1wue_A	386	Mandelate racemase/muconate lactonizing enzyme FA	96.81
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	96.81
3va8_A	445	Probable dehydratase; enolase, magnesium binding s	96.79
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	96.78
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.77
3vdg_A	445	Probable glucarate dehydratase; enolase, magnesium	96.77
4h1z_A	412	Enolase Q92ZS5; dehydratase, magnesium binding sit	96.76
3qld_A	388	Mandelate racemase/muconate lactonizing protein; s	96.76
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	96.72
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	96.65
3cyj_A	372	Mandelate racemase/muconate lactonizing enzyme-LI	96.59
3vc5_A	441	Mandelate racemase/muconate lactonizing protein; d	96.57
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	96.57
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.55
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	96.52
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.52
4hpn_A	378	Putative uncharacterized protein; enolase, enzyme	96.51
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	96.51
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	96.48
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	96.46
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	96.42
4h2h_A	376	Mandelate racemase/muconate lactonizing enzyme; en	96.41
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	96.4
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	96.36
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	96.36
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	96.34
3ijl_A	338	Muconate cycloisomerase; enolase superfamily, dipe	96.32
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.29
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.23
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	96.19
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	96.14
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	96.14
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	96.14
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.13
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	96.13
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.1
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	96.08
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	96.03
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	96.03
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	96.02
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	95.99
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	95.98
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	95.97
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	95.97
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	95.96
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	95.95
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	95.93
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	95.93
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.93
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	95.91
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	95.9
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	95.9
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	95.89
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.89
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	95.85
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	95.76
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	95.74
3p0w_A	470	Mandelate racemase/muconate lactonizing protein; s	95.73
2opj_A	327	O-succinylbenzoate-COA synthase; TIM barrel, struc	95.71
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	95.7
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	95.7
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	95.68
3mzn_A	450	Glucarate dehydratase; lyase, structural genomics,	95.67
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	95.67
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	95.66
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.65
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	95.64
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	95.62
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	95.6
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	95.59
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	95.57
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	95.55
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	95.53
3v5c_A	392	Mandelate racemase/muconate lactonizing protein; e	95.5
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	95.48
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	95.47
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	95.45
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.43
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	95.43
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	95.37
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	95.37
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	95.36
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	95.36
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	95.31
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	95.3
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	95.29
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	95.28
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	95.27
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	95.25
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.25
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	95.25
1jpd_X	324	L-Ala-D/L-Glu epimerase; enolase superfamily, muco	95.23
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	95.23
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	95.21
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	95.2
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	95.19
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	95.18
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.18
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	95.18
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.17
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	95.17
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	95.15
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	95.13
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	95.1
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	95.08
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	95.06
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	95.05
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	94.98
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	94.97
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	94.91
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	94.9
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	94.88
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	94.84
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	94.84
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	94.83
3pfr_A	455	Mandelate racemase/muconate lactonizing protein; e	94.82
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	94.82
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	94.8
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	94.79
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	94.73
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	94.65
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	94.64
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	94.63
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	94.61
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	94.6
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	94.59
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	94.58
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	94.57
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	94.5
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	94.48
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	94.46
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	94.45
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	94.44
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	94.38
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	94.35
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	94.35
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	94.31
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	94.29
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	94.18
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	94.18
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	94.17
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	94.16
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	94.1
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	94.06
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	94.05
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	93.96
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	93.95
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	93.94
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.86
3eol_A	433	Isocitrate lyase; seattle structural center for in	93.85
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	93.79
2okt_A	342	OSB synthetase, O-succinylbenzoic acid synthetase;	93.7
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	93.7
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	93.69
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	93.67
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	93.62
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	93.6
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	93.48
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	93.46
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	93.39
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	93.39
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	93.36
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	93.35
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	93.25
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.21
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	93.13
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	93.09
1kko_A	413	3-methylaspartate ammonia-lyase; enolase superfami	93.09
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	93.04
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	92.94
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	92.89
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	92.86
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	92.85
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	92.81
1kcz_A	413	Beta-methylaspartase; beta zigzag, alpha/beta-barr	92.8
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	92.79
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	92.73
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	92.65
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	92.63
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	92.62
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	92.62
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	92.58
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	92.56
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	92.54
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	92.5
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	92.49
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	92.46
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	92.43
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	92.4
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	92.38
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	92.36
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	92.36
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	92.35
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	92.31
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	92.31
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	92.3
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	92.27
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	92.27
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	92.22
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	92.21
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	92.21
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	92.21
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	92.17
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	92.15
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	92.14
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	92.14
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	92.13
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	92.12
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	92.07
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	92.07
3tqp_A	428	Enolase; energy metabolism, lyase; 2.20A {Coxiella	92.05
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	92.04
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	92.02
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	91.97
4g8t_A	464	Glucarate dehydratase; enolase, enzyme function IN	91.97
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.95
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	91.93
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	91.92
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	91.89
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	91.84
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	91.82
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	91.76
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	91.75
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	91.69
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	91.68
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	91.62
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	91.57
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	91.57

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=100.00  E-value=4e-62  Score=461.47  Aligned_cols=301  Identities=39%  Similarity=0.669  Sum_probs=269.6

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC   79 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~   79 (311)
                      .|+||.+||.+|+.+|+.+++||||++++.++ ++..+++++++.+.|+++||+|++|+.|++||++++++|||+||||+
T Consensus        12 ~g~td~~~r~~~r~~Gg~gli~te~~~~~~~~~~~~~~~~~~~~~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~   91 (350)
T 3b0p_A           12 VDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVLRGNRERLLAFRPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNL   91 (350)
T ss_dssp             TTTSSHHHHHHHHHHCSSSBEECCCEEHHHHHHSCHHHHHCCCGGGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCCHHHHHHHHHHcCCCCEEEeCCEEechhhcCCHHHHhccCCCCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence            37999999999999997699999999999988 65556777888999999999999999999999999999999999999


Q ss_pred             CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccc
Q psy2386          80 GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLK  159 (311)
Q Consensus        80 gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~  159 (311)
                      |||++++++++||++|+++++++.+|++++++++++||+||+|+||++..+.+++.++++.++++|+++|+||+|+. .+
T Consensus        92 gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~-~~  170 (350)
T 3b0p_A           92 GCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSA-LL  170 (350)
T ss_dssp             CCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCB-C-
T ss_pred             cCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCch-hc
Confidence            99999999999999999999999999999999999999999999999876666788999999999999999999987 35


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhhccCCCCCC
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYK  239 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~  239 (311)
                      |++|+.+++.++.+|++++++++.+|++|||+||||.|++|+.++++.||+||+||+++.|||+|+++.+.+++ ..  +
T Consensus       171 g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~GaD~V~iGRa~l~~P~l~~~i~~~l~~-~~--~  247 (350)
T 3b0p_A          171 ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLKRVDGVMLGRAVYEDPFVLEEADRRVFG-LP--R  247 (350)
T ss_dssp             ---------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHTTSSEEEECHHHHHCGGGGTTHHHHTTC-CS--C
T ss_pred             ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHhCCCEEEECHHHHhCcHHHHHHHHHhcC-CC--C
Confidence            78877666677889999999999986899999999999999999998899999999999999999999988876 32  5


Q ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386         240 IPTRIDIINRMILYIRQQLNNNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL  308 (311)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~  308 (311)
                      ++++.++++.+++|++.++++|  ..+..+|||+.||++|+|++++||+.|++.++.. ++.++|+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~kh~~~~~~g~~~~~~~r~~l~~~~~~~-~~~~~l~~~~  313 (350)
T 3b0p_A          248 RPSRLEVARRMRAYLEEEVLKG--TPPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQ-ALDRALRLME  313 (350)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT--CCHHHHHTTSTTTTTTSTTHHHHHHHHHHHCSHH-HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHccCCCHHHHHHHHHCCCCHH-HHHHHHHHHh
Confidence            7899999999999999988877  4689999999999999999999999999999888 8888887753

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=100.00  E-value=3.8e-56  Score=415.74  Aligned_cols=287  Identities=21%  Similarity=0.361  Sum_probs=257.9

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      .|+||.+||.+|+++|+ ++++|||++++.+. ++  ..+.+ .++.+.|+++||+|++|+.|++||++++++ ||+|||
T Consensus        13 ~~~t~~~~r~~~~~~G~-gli~te~~~~~~~~~~~~~~~~~l-~~~~~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iei   89 (318)
T 1vhn_A           13 AGYTDSAFRTLAFEWGA-DFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQIFGSEPNELSEAARILSEK-YKWIDL   89 (318)
T ss_dssp             TTTCSHHHHHHHHTTTC-CCEECSCEEHHHHHTTCHHHHHHS-CCTTCTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEE
T ss_pred             CCCCcHHHHHHHHHHCc-CEEEeCCEEEcccccCCHhHHHhh-hCcCCCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEE
Confidence            37899999999999995 99999999998876 43  34556 788899999999999999999999999999 999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |+|||+++++++++|++|+++|+++.++++++++.+++||+||+|.||+..+.    .++++.++++|+|+|+||+|+. 
T Consensus        90 n~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~~~~----~~~a~~l~~~G~d~i~v~g~~~-  164 (318)
T 1vhn_A           90 NAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEV----EEIYRILVEEGVDEVFIHTRTV-  164 (318)
T ss_dssp             EECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCCH----HHHHHHHHHTTCCEEEEESSCT-
T ss_pred             ECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCChHHH----HHHHHHHHHhCCCEEEEcCCCc-
Confidence            99999999999999999999999999999999999999999999999987653    4899999999999999999986 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh-h-cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN-Y-IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~-~-adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      .++++       ++++|+.++++++   ++|||+||||+|++|+.++++ . ||+||+||+++.|||++.++.+.+.++.
T Consensus       165 ~~~~~-------~~~~~~~i~~i~~---~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~  234 (318)
T 1vhn_A          165 VQSFT-------GRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGK  234 (318)
T ss_dssp             TTTTS-------SCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSC
T ss_pred             cccCC-------CCcCHHHHHHHHc---CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCC
Confidence            34443       3478998888887   699999999999999999998 4 9999999999999999999998877433


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386         236 PQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL  308 (311)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~  308 (311)
                      .  +++++.++++.+.+|++...+ +|+...+..+|+|+.||++|+|++++||+.|+++++.. ++.++|++++
T Consensus       235 ~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~  305 (318)
T 1vhn_A          235 Y--SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQ-ILKEMFYNFI  305 (318)
T ss_dssp             C--CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHH-HHHHHHHHHH
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhcCCChHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence            2  468899999999999999888 77533689999999999999999999999999999999 9999998876

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=100.00  E-value=4.1e-33  Score=262.40  Aligned_cols=175  Identities=13%  Similarity=0.101  Sum_probs=151.8

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHH---HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQ---KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~---~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      .+.|+++||+|+++++|+++|+.++   +.|+|+||||+|||+.+    + |..|+++|+.+.+|+++|++.+++||+||
T Consensus       125 ~~~pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~----g-g~~l~~~~e~~~~il~av~~~~~~PV~vK  199 (354)
T 4ef8_A          125 GKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP----G-KPQVAYDFDAMRQCLTAVSEVYPHSFGVK  199 (354)
T ss_dssp             TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCST----T-SCCGGGSHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCcEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCC----C-chhhccCHHHHHHHHHHHHHhhCCCeEEE
Confidence            4689999999999999999999998   56899999999999985    3 78899999999999999999999999999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEe------------cCcc------ccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVH------------ARNA------FLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh------------~Rt~------~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      +|++++.    +++.++++.++++| +|+|+++            +|+.      ..+|+||+   ..+|.+|+++++++
T Consensus       200 i~p~~d~----~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~---~i~p~a~~~i~~v~  272 (354)
T 4ef8_A          200 MPPYFDF----AHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGR---YVLPTALANINAFY  272 (354)
T ss_dssp             ECCCCSH----HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGG---GGHHHHHHHHHHHH
T ss_pred             ecCCCCH----HHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCC---CCchHHHHHHHHHH
Confidence            9998753    24678888888998 9999863            4431      24678876   34467899999999


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN  230 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~  230 (311)
                      +..+++|||+||||+|++|+.+++.. ||+||+||+++.| ||+++++.+.
T Consensus       273 ~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~~~~i~~~  323 (354)
T 4ef8_A          273 RRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSE  323 (354)
T ss_dssp             HHCTTSEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHH
T ss_pred             HhCCCCCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHHHHHHHHH
Confidence            98767999999999999999999976 9999999999998 9999887653

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=100.00  E-value=2.8e-32  Score=253.32  Aligned_cols=213  Identities=15%  Similarity=0.041  Sum_probs=174.8

Q ss_pred             CHHHHHHHHHhCCCcEEEecceeccccc-CCc---------------------h---hccccC--CC--CCCeEEEecCC
Q psy2386           5 DRHCRMFHRQITRYSWLYTEMFTTQAIL-GNK---------------------K---HCLDFN--AE--EHPIAFQVGDN   55 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~temv~a~~l~-~~~---------------------~---~~l~~~--~~--~~p~~~Ql~g~   55 (311)
                      |.+|+..+.+.| .++++|+|++.+... +..                     +   +.+...  +.  +.|+++||+|+
T Consensus        25 ~~~~~~~~~~~G-~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~g~  103 (311)
T 1jub_A           25 TIEDLEELKASQ-AGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGM  103 (311)
T ss_dssp             SHHHHHHHHHSS-CSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHHTCSSSCCEEEECCS
T ss_pred             CHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEcCCC
Confidence            789999999999 589999999988754 211                     1   111111  23  78999999999


Q ss_pred             CHHHHHHHHHHHHHcCCC-EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYD-EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d-~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      ++++|.++|+.+.++|+| +||||++||+.+     .|..+..+++.+.++++++++.+++||+||++.+++.    +++
T Consensus       104 ~~~~~~~~a~~~~~~g~d~~iein~~~P~~~-----g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~----~~~  174 (311)
T 1jub_A          104 SAAENIAMLKKIQESDFSGITELNLSCPNVP-----GEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL----VHF  174 (311)
T ss_dssp             SHHHHHHHHHHHHHSCCCSEEEEESCCCCSS-----SCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH----HHH
T ss_pred             CHHHHHHHHHHHHhcCCCeEEEEeccCCCCC-----CcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCH----HHH
Confidence            999999999999999999 999999999972     2667778999999999999999999999999988742    246


Q ss_pred             HHHHHHHHHcCCCEEEEecCcc------------------ccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCC
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNA------------------FLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGI  195 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~------------------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI  195 (311)
                      .++++.++++|+|+|++|+++.                  ..+|++|+.   ..+..|+.++++++.++ ++|||++|||
T Consensus       175 ~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~---~~~~~~~~i~~v~~~~~~~ipvi~~GGI  251 (311)
T 1jub_A          175 DIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAY---IKPTALANVRAFYTRLKPEIQIIGTGGI  251 (311)
T ss_dssp             HHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGG---GHHHHHHHHHHHHTTSCTTSEEEEESSC
T ss_pred             HHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCcccccc---ccHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence            7889999999999999998851                  123444431   12346899999999874 6999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      +|++|+.+++.. ||+||+||+++. +||+++++.+.
T Consensus       252 ~~~~da~~~l~~GAd~V~vg~~~l~~~p~~~~~i~~~  288 (311)
T 1jub_A          252 ETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKE  288 (311)
T ss_dssp             CSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEchHHHhcCcHHHHHHHHH
Confidence            999999999976 999999999996 99999887653

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=99.98  E-value=2e-31  Score=250.48  Aligned_cols=222  Identities=13%  Similarity=0.157  Sum_probs=175.9

Q ss_pred             CCHHHHHHHH--HhCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecCC----------
Q psy2386           4 TDRHCRMFHR--QITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGDN----------   55 (311)
Q Consensus         4 td~~fR~l~~--~~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g~----------   55 (311)
                      |+..++.+.+  +.| .+|++|||++..  +..  +.    +      .+.+  ..+..+.++++||+..          
T Consensus        38 ~~~~~~~y~~rA~gG-~gliite~~~v~~~g~~~~~~~~i~~d~~~~~~~~~~~~vh~~g~~i~~QL~h~Gr~~~~~~~~  116 (338)
T 1z41_A           38 TPFHMAHYISRAIGQ-VGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDI  116 (338)
T ss_dssp             CHHHHHHHHHHHHTT-CSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCSSCC
T ss_pred             CHHHHHHHHHHHcCC-CCEEEeCCeeccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCcccCCCCCC
Confidence            4445444332  246 599999999764  332  11    1      1122  1367788999999853          


Q ss_pred             -------------CH------------HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHH
Q psy2386          56 -------------EP------------KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLL  101 (311)
Q Consensus        56 -------------~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~  101 (311)
                                   .|            ++|++||+++.++|||+||||++|         |..|.+++.||++|++++++
T Consensus       117 ~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~  196 (338)
T 1z41_A          117 FAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRF  196 (338)
T ss_dssp             EESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHH
T ss_pred             cCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHH
Confidence                         34            789999999999999999999997         99999999999999999999


Q ss_pred             HHHHHHHHhccccceeEEEEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH
Q psy2386         102 VSDCIKAMRDSVEIDITVKHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN  179 (311)
Q Consensus       102 ~~~iv~~v~~~~~~pvsvKiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~  179 (311)
                      +.+|+++|+++++.||+||++....  ...+.++..++++.+++.|+|+|++|+++...+.+     ...+..+++++++
T Consensus       197 ~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~-----~~~~~~~~~~~~~  271 (338)
T 1z41_A          197 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADI-----NVFPGYQVSFAEK  271 (338)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCC-----CCCTTTTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCC-----CCCccchHHHHHH
Confidence            9999999999999999999998311  11224467899999999999999999986421110     0112247899999


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      +++.+ ++||++||||.|++++.++++.  ||+|++||+++.||++++++.+.+.
T Consensus       272 ir~~~-~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~~~~~  325 (338)
T 1z41_A          272 IREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLN  325 (338)
T ss_dssp             HHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTT
T ss_pred             HHHHC-CCCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHHcCCC
Confidence            99998 8999999999999999999975  9999999999999999999987653

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=99.97  E-value=2.1e-31  Score=253.40  Aligned_cols=214  Identities=14%  Similarity=0.171  Sum_probs=176.8

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecC-------------
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGD-------------   54 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g-------------   54 (311)
                      ||.++|.++++.| .+|++||++++.  +..  +.    +      .+.+  ..|..+.++++||+.             
T Consensus        42 t~~~~~~y~~rA~-~GLiitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~  120 (377)
T 2r14_A           42 GRLQQIYYGQRAS-AGLIISEATNISPTARGYVYTPGIWTDAQEAGWKGVVEAVHAKGGRIALQLWHVGRVSHELVQPDG  120 (377)
T ss_dssp             CHHHHHHHHHTTT-SSCEEEEEEESSGGGCCBTTCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSCCTTTSGGG
T ss_pred             CHHHHHHHHHHhc-CCEEEEcceeeccccccCCCCcccCCHHHHHHHHHHHHHHhhcCCeEEEEccCCccccccccccCC
Confidence            8999999999988 699999999875  332  11    1      1222  136778899999985             


Q ss_pred             ------------------------------CCH------------HHHHHHHHHHHHcCCCEEEeccCC---------Cc
Q psy2386          55 ------------------------------NEP------------KKLAKSAKIIQKWGYDEINLNCGC---------PS   83 (311)
Q Consensus        55 ------------------------------~~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~   83 (311)
                                                    ..|            ++|++||+++.++|||+||||++|         |.
T Consensus       121 ~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~  200 (377)
T 2r14_A          121 QQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALETDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATG  200 (377)
T ss_dssp             CCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTT
T ss_pred             CcccCCCcccccccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCc
Confidence                                          134            799999999999999999999997         99


Q ss_pred             cccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccC-C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI-D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        84 ~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~-~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      .|.+++.||++|+++++++.||+++||++++. ||+||++... .    ...+.++..++++.++++|+|+|++|+|+. 
T Consensus       201 ~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~-  279 (377)
T 2r14_A          201 TNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDW-  279 (377)
T ss_dssp             TCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC--
T ss_pred             cccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc-
Confidence            99999999999999999999999999999853 9999999852 1    223345678999999999999999999863 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+...       . .+|++++++++.+ ++|||+|||| +++++.++++.  ||+||+||+++.|||+++++.+
T Consensus       280 ~~~~~-------~-~~~~~~~~ik~~~-~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~  343 (377)
T 2r14_A          280 IGGDI-------T-YPEGFREQMRQRF-KGGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFRL  343 (377)
T ss_dssp             ------------C-CCTTHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             cCCCC-------c-chHHHHHHHHHHC-CCCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHhCchHHHHHHc
Confidence            11111       1 2578899999998 8999999999 69999999975  9999999999999999999875

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=99.97  E-value=9.5e-32  Score=252.43  Aligned_cols=173  Identities=12%  Similarity=0.146  Sum_probs=146.4

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCC-EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYD-EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d-~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      ..+.|+++||+|+++++|+++|+.++++|++ +||||+|||+.+    | |..|+++|+.+.+|+++|++.+++||+||+
T Consensus       126 ~~~~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~----G-~~~l~~~~e~l~~il~av~~~~~~PV~vKi  200 (345)
T 3oix_A          126 PDSKNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVP----G-XPQIAYDFETTDQILSEVFTYFTKPLGIKL  200 (345)
T ss_dssp             TTCCCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCST----T-CCCGGGCHHHHHHHHHHHTTTCCSCEEEEE
T ss_pred             cCCCCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcC----C-chhhcCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence            4578999999999999999999999999987 999999999985    2 688999999999999999999999999999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEE-------------EecCccc------cccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFI-------------VHARNAF------LKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~it-------------vh~Rt~~------~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      |.+.+       ..++++.++++|++.|+             +|.|+..      .+|+||+   ...+..|++++++++
T Consensus       201 ~p~~~-------~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~---ai~p~a~~~v~~i~~  270 (345)
T 3oix_A          201 PPYFD-------IVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGD---YVKPTALANVHAFYK  270 (345)
T ss_dssp             CCCCC-------HHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEG---GGHHHHHHHHHHHHT
T ss_pred             CCCCC-------HHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCc---cccHHHHHHHHHHHH
Confidence            98732       35777777877776553             5655432      4567775   223445899999999


Q ss_pred             hCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehh-hhhCCcchHHhHhh
Q psy2386         183 DFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE-AYKNPFLMSNFDLN  230 (311)
Q Consensus       183 ~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa-~l~~P~i~~~~~~~  230 (311)
                      .++ ++|||++|||.|++|+.+++.. ||+|||||+ ++.+||++.++.+.
T Consensus       271 ~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~~~~~i~~~  321 (345)
T 3oix_A          271 RLNPSIQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQIFKRITKE  321 (345)
T ss_dssp             TSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHH
T ss_pred             HcCCCCcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhcChHHHHHHHHH
Confidence            985 6999999999999999999976 999999999 89999999887653

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=99.97  E-value=3.5e-31  Score=246.23  Aligned_cols=213  Identities=11%  Similarity=0.053  Sum_probs=173.9

Q ss_pred             CHHHHHHHHHhCCCcEEEecceeccccc-C-------------------C--chh---cccc--CCCCCCeEEEecCCCH
Q psy2386           5 DRHCRMFHRQITRYSWLYTEMFTTQAIL-G-------------------N--KKH---CLDF--NAEEHPIAFQVGDNEP   57 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~temv~a~~l~-~-------------------~--~~~---~l~~--~~~~~p~~~Ql~g~~~   57 (311)
                      |..++..+.+.| .+++.|+|++.+... +                   +  .+.   .+..  ...+.|+++||+|.++
T Consensus        27 ~~~~~~~~~~~G-~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~~p~~~~i~g~~~  105 (314)
T 2e6f_A           27 TEEDLRCMTASS-SGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSV  105 (314)
T ss_dssp             SHHHHHHHHHSS-CSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTTCCEEEEECCSSH
T ss_pred             CHHHHHHHHHCC-CCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhhcCCCcEEEEeCCCCH
Confidence            678888899999 589999999987632 1                   0  111   1211  2247899999999999


Q ss_pred             HHHHHHHHHHHHcCCC---EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          58 KKLAKSAKIIQKWGYD---EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d---~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      +++.++|+.+.++|+|   +||||++||+.+     .|..+..+++.+.++++++++.+++||+||++.+++.    +++
T Consensus       106 ~~~~~~a~~~~~~g~d~~~~iein~~~P~~~-----g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~----~~~  176 (314)
T 2e6f_A          106 EENVAMVRRLAPVAQEKGVLLELNLSCPNVP-----GKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDI----AHF  176 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEECCCCCST-----TCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCCCH----HHH
T ss_pred             HHHHHHHHHHHHhCCCcCceEEEEcCCCCCC-----CchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCCCH----HHH
Confidence            9999999999999999   999999999972     2567778999999999999999999999999988742    356


Q ss_pred             HHHHHHHHHcC-CCEEEEecCcc------------------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         135 RDFVGTVSSAG-CRTFIVHARNA------------------FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       135 ~e~~~~l~~~G-~~~itvh~Rt~------------------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      .++++.++++| +|+|++|+++.                  ..+|++|+   ...+..|+.++++++.++++|||++|||
T Consensus       177 ~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~---~~~p~~~~~i~~v~~~~~~ipvi~~GGI  253 (314)
T 2e6f_A          177 DTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGK---YILPTALANVNAFYRRCPDKLVFGCGGV  253 (314)
T ss_dssp             HHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESG---GGHHHHHHHHHHHHHHCTTSEEEEESSC
T ss_pred             HHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcc---cccHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            78899999999 99999999872                  01234432   1123468999999998767999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      +|++|+.+++.. ||+||+||+++. +||+++++.+.
T Consensus       254 ~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~i~~~  290 (314)
T 2e6f_A          254 YSGEDAFLHILAGASMVQVGTALQEEGPGIFTRLEDE  290 (314)
T ss_dssp             CSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHHHHHH
Confidence            999999999976 999999999996 99999888753

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=99.97  E-value=7.3e-31  Score=248.80  Aligned_cols=213  Identities=17%  Similarity=0.218  Sum_probs=178.1

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecC-------------
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGD-------------   54 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g-------------   54 (311)
                      ||.++|.++++.| .+|++|||++..  +..  +.    +      .+.+  ..|..+.++++||+.             
T Consensus        38 t~~~~~~y~~rAg-~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~g  116 (364)
T 1vyr_A           38 TPLMGEYYRQRAS-AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEDGRIAVQLWHTGRISHSSIQPGG  116 (364)
T ss_dssp             CHHHHHHHHHTTT-SSEEEEEEEESSSTTCCSTTCCBSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSSCGGGSGGG
T ss_pred             CHHHHHHHHHHhc-CCEEEEccccccccccCCCCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeccCCcccCcccccCC
Confidence            8999999999888 599999999865  332  11    1      1222  136778899999972             


Q ss_pred             -----------------------------CCH------------HHHHHHHHHHHHcCCCEEEeccCC---------Ccc
Q psy2386          55 -----------------------------NEP------------KKLAKSAKIIQKWGYDEINLNCGC---------PSN   84 (311)
Q Consensus        55 -----------------------------~~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~~   84 (311)
                                                   ..|            ++|++||+++.++|||+||||++|         |..
T Consensus       117 ~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~  196 (364)
T 1vyr_A          117 QAPVSASALNANTRTSLRDENGNAIRVDTTTPRALELDEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSS  196 (364)
T ss_dssp             CCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTT
T ss_pred             CccccCCCcccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcc
Confidence                                         234            799999999999999999999997         999


Q ss_pred             ccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEecc--CCC----CCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          85 RVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIG--IDD----INSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        85 ~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g--~~~----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |.+.+.||++++++++++.||+++||++++ .||+||++.+  |..    ..+.++..++++.++++|+|+|++|+|+. 
T Consensus       197 N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~-  275 (364)
T 1vyr_A          197 NQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL-  275 (364)
T ss_dssp             CCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT-
T ss_pred             cccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcc-
Confidence            999999999999999999999999999984 3999999986  332    22445678899999999999999999863 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .++         ++..|++++++++.+ ++||++|||| |++++.++++.  ||+||+||+++.|||+++++.+
T Consensus       276 ~~~---------~~~~~~~~~~v~~~~-~iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~  338 (364)
T 1vyr_A          276 AGG---------KPYSEAFRQKVRERF-HGVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQK  338 (364)
T ss_dssp             TBC---------CCCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             cCC---------CcccHHHHHHHHHHC-CCCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHhChhHHHHHHc
Confidence            111         123688999999998 8999999999 99999999975  9999999999999999999875

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=99.97  E-value=9.1e-31  Score=248.22  Aligned_cols=214  Identities=14%  Similarity=0.132  Sum_probs=177.6

Q ss_pred             CCCHHHHHHHHHhCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecC------------
Q psy2386           3 LTDRHCRMFHRQITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGD------------   54 (311)
Q Consensus         3 ~td~~fR~l~~~~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g------------   54 (311)
                      .||.++|.++++.+ .+|++|||++..  +..  +.    +      .+.+  ..|..+.++++||+.            
T Consensus        37 ~t~~~~~~y~~rA~-~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~g  115 (365)
T 2gou_A           37 ANHMMAIYYAQRAS-AGLIVSEGTQISPTAKGYAWTPGIYTPEQIAGWRIVTEAVHAKGCAIFAQLWHVGRVTHPDNIDG  115 (365)
T ss_dssp             CCHHHHHHHHTTTT-SSEEEEEEEESSGGGCCSTTCCBSSSHHHHHHHHHHHHHHHHHSCEEEEEEECCTTSSCGGGTTT
T ss_pred             CCHHHHHHHHHHhc-CCEEEECceeecccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEeecCCCcccccccCC
Confidence            37899999998888 699999999865  332  11    1      1222  136677899999973            


Q ss_pred             ------------------------------CCH------------HHHHHHHHHHHHcCCCEEEeccCC---------Cc
Q psy2386          55 ------------------------------NEP------------KKLAKSAKIIQKWGYDEINLNCGC---------PS   83 (311)
Q Consensus        55 ------------------------------~~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~   83 (311)
                                                    ..|            ++|++||+++.++|||+||||++|         |.
T Consensus       116 ~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~  195 (365)
T 2gou_A          116 QQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTKADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSE  195 (365)
T ss_dssp             CCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGG
T ss_pred             CCccCCCCccccccccccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCC
Confidence                                          234            799999999999999999999998         99


Q ss_pred             cccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEec-cCC----CCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          84 NRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRI-GID----DINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        84 ~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~-g~~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      .|.+.+.||++|+++++++.||+++||++++. ||+||++. +|.    ...+.++..++++.++++|+|+|++|+++. 
T Consensus       196 ~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~-  274 (365)
T 2gou_A          196 ANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW-  274 (365)
T ss_dssp             GCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT-
T ss_pred             ccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc-
Confidence            99999999999999999999999999999843 99999998 332    223455678999999999999999999862 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                       .+   .     +...|++++++++.+ ++|||+|||| |++++.++++.  ||+||+||+++.|||+++++.+
T Consensus       275 -~~---~-----~~~~~~~~~~i~~~~-~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~~  337 (365)
T 2gou_A          275 -DD---A-----PDTPVSFKRALREAY-QGVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIANPDLPERLRH  337 (365)
T ss_dssp             -TB---C-----CCCCHHHHHHHHHHC-CSEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHH
T ss_pred             -CC---C-----CCccHHHHHHHHHHC-CCcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHhCchHHHHHHc
Confidence             21   1     113578899999998 7999999999 99999999975  9999999999999999999875

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=99.97  E-value=4.4e-31  Score=251.27  Aligned_cols=209  Identities=15%  Similarity=0.138  Sum_probs=169.2

Q ss_pred             HHHHHHHhCCCcEEEecceeccc--cc--C-----Cc-----hhcc--ccCCCCCCeEEEecC-----------------
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQA--IL--G-----NK-----KHCL--DFNAEEHPIAFQVGD-----------------   54 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~~--l~--~-----~~-----~~~l--~~~~~~~p~~~Ql~g-----------------   54 (311)
                      ||+.|+  | .+|++||++++..  ..  +     +.     .+.+  ..|..+.++++||+.                 
T Consensus        54 y~~rA~--g-~GLiite~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~  130 (376)
T 1icp_A           54 YSQRST--N-GGLLIGEATVISETGIGYKDVPGIWTKEQVEAWKPIVDAVHAKGGIFFCQIWHVGRVSNKDFQPNGEDPI  130 (376)
T ss_dssp             HHHTCC--T-TCEEECCCEECSGGGCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCTTSSCTTTSGGGCCCE
T ss_pred             HHHhcC--C-eeEEEECceeeccccccCcccCccCCHHHHHHHHHHHHHHHhcCCeEEEEeecCCCCcCcccccCCCcee
Confidence            677666  6 5899999998753  22  1     11     1222  236778899999986                 


Q ss_pred             ---------------------CCH------------HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCccc
Q psy2386          55 ---------------------NEP------------KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFG   92 (311)
Q Consensus        55 ---------------------~~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G   92 (311)
                                           ..|            ++|++||+++.++|||+||||+||         |..|.+.+.||
T Consensus       131 apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yG  210 (376)
T 1icp_A          131 SCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYG  210 (376)
T ss_dssp             ESSSCCCCCEECTTSSCEECCCCCEECCTTTHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTS
T ss_pred             cCCCCCCccccccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccC
Confidence                                 134            699999999999999999999997         99999999999


Q ss_pred             CcccCChHHHHHHHHHHhccccc-eeEEEEecc-C----CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC
Q psy2386          93 AILMTKPLLVSDCIKAMRDSVEI-DITVKHRIG-I----DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN  166 (311)
Q Consensus        93 ~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g-~----~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~  166 (311)
                      ++++++++++.+|+++||++++. ||+||++.. |    +...+.++..++++.|+++|+++|++|+|+.. +..  +  
T Consensus       211 GslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~-~~~--~--  285 (376)
T 1icp_A          211 GSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMK-TAW--E--  285 (376)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCC-C-------
T ss_pred             ccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccc-CCC--C--
Confidence            99999999999999999999853 999999975 2    22334456789999999999999999998631 111  0  


Q ss_pred             CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       167 ~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                         ...+|++++++++.+ ++||++|||| |++++.++++.  ||+||+||+++.|||+++++.+
T Consensus       286 ---~~~~~~~~~~vr~~~-~iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~  345 (376)
T 1icp_A          286 ---KIECTESLVPMRKAY-KGTFIVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFEL  345 (376)
T ss_dssp             ------CCCCSHHHHHHC-CSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             ---ccccHHHHHHHHHHc-CCCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHHc
Confidence               113567788999998 7999999999 99999999975  9999999999999999999875

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=99.97  E-value=7e-31  Score=248.68  Aligned_cols=172  Identities=15%  Similarity=0.163  Sum_probs=147.1

Q ss_pred             CCCeEEEecCC-----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-------
Q psy2386          45 EHPIAFQVGDN-----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-------  112 (311)
Q Consensus        45 ~~p~~~Ql~g~-----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-------  112 (311)
                      +.|+++||+|+     ++++|+++++.+.+. +|+||||+|||+.+      |..++++++.+.+++++++++       
T Consensus       146 ~~pv~vniggn~~t~~~~~dy~~~~~~~~~~-ad~ielNisCPn~~------G~~~l~~~~~l~~ll~av~~~~~~~~~~  218 (367)
T 3zwt_A          146 GLPLGVNLGKNKTSVDAAEDYAEGVRVLGPL-ADYLVVNVSSPNTA------GLRSLQGKAELRRLLTKVLQERDGLRRV  218 (367)
T ss_dssp             TCCEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHTSCGG
T ss_pred             CceEEEEEecCCCCCcCHHHHHHHHHHHhhh-CCEEEEECCCCCCC------CccccCCHHHHHHHHHHHHHHHhhcccc
Confidence            57999999996     799999999999875 79999999999985      445789999999999999764       


Q ss_pred             ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------ccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         113 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       113 ~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      +++||+||+|.+++++    ++.++++.++++|+|+|++|+++.            +.+|+||+   ...+..|+.++++
T Consensus       219 ~~~Pv~vKi~p~~~~~----~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~---~i~p~a~~~v~~i  291 (367)
T 3zwt_A          219 HRPAVLVKIAPDLTSQ----DKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGK---PLRDLSTQTIREM  291 (367)
T ss_dssp             GCCEEEEEECSCCCHH----HHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEG---GGHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCCCHH----HHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCc---ccchhHHHHHHHH
Confidence            6899999999987642    478999999999999999998873            13466665   2234467999999


Q ss_pred             HHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhh
Q psy2386         181 KKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLN  230 (311)
Q Consensus       181 ~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~  230 (311)
                      ++.++ ++|||++|||.|++|+.++++. ||+||+||++ +.+||++.++.+.
T Consensus       292 ~~~v~~~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~~~~~i~~~  344 (367)
T 3zwt_A          292 YALTQGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRE  344 (367)
T ss_dssp             HHHTTTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHH
T ss_pred             HHHcCCCceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcHHHHHHHHH
Confidence            99985 6999999999999999999986 9999999999 5789999888754

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=99.97  E-value=1.7e-30  Score=248.94  Aligned_cols=216  Identities=15%  Similarity=0.098  Sum_probs=171.2

Q ss_pred             HHHHHHHhCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecC-----------------
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGD-----------------   54 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g-----------------   54 (311)
                      ||..|+  | .+|++||++++.  +..  +.    .      .+.+  ..+..+.++++||+.                 
T Consensus        56 y~~rA~--G-~GLIitE~~~v~~~g~~~~~~~gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~~~g~~~~  132 (402)
T 2hsa_B           56 YEQRAT--A-GGFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPI  132 (402)
T ss_dssp             HHHHCC--T-TCEEECCCEESSTTCCCSTTCCBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCTTSCCGGGCTTCCCCE
T ss_pred             HHHHhc--c-CCEEEecceeeccccccCCCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeccCCcccccccccCCCccc
Confidence            566665  6 689999999875  322  11    1      1122  236778899999982                 


Q ss_pred             -----------------------CCH------------HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCc
Q psy2386          55 -----------------------NEP------------KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGF   90 (311)
Q Consensus        55 -----------------------~~~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~   90 (311)
                                             ..|            ++|++||+++.++|||+||||+||         |..|.+++.
T Consensus       133 apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~eI~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~  212 (402)
T 2hsa_B          133 SSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDE  212 (402)
T ss_dssp             ESCSCCCCTTCEEECTTSCEEECCCCEECCGGGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCST
T ss_pred             cCCCcccccccccccccccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCc
Confidence                                   234            799999999999999999999997         999999999


Q ss_pred             ccCcccCChHHHHHHHHHHhcccc-ceeEEEEecc-C----CCCCcHHHHHHHHHHHHHcC------CCEEEEecCcccc
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIG-I----DDINSYDFVRDFVGTVSSAG------CRTFIVHARNAFL  158 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g-~----~~~~~~~~~~e~~~~l~~~G------~~~itvh~Rt~~~  158 (311)
                      ||++|+++++++.||+++||++++ .||+||++.+ |    +...+.++..++++.|+++|      +++|++|+++.. 
T Consensus       213 yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~-  291 (402)
T 2hsa_B          213 YGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYV-  291 (402)
T ss_dssp             TSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCC-
T ss_pred             cCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccc-
Confidence            999999999999999999999985 5999999986 2    12233456789999999999      999999998631 


Q ss_pred             ccCCCCc-CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         159 KKLNPKQ-NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       159 ~G~~g~~-~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.+..+. ....+..+|++++++++.+ ++|||+|||| |++++.++++.  ||+||+||+++.|||+++++.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~vk~~~-~iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~~  363 (402)
T 2hsa_B          292 AYGQTEAGRLGSEEEEARLMRTLRNAY-QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKL  363 (402)
T ss_dssp             TTTTSSSTTTTHHHHHHHHHHHHHHHC-SSCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             cccCCccccccCCcchHHHHHHHHHHC-CCCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHHHHh
Confidence            1111110 0000113688899999998 8999999999 99999999975  9999999999999999999875

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=99.97  E-value=6.6e-30  Score=239.90  Aligned_cols=208  Identities=13%  Similarity=0.133  Sum_probs=165.2

Q ss_pred             HHHHHHHhCCCcEEEecceeccccc-CCc-----------------------hhc---cccCCCCCCeEEEecCCC----
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQAIL-GNK-----------------------KHC---LDFNAEEHPIAFQVGDNE----   56 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~~l~-~~~-----------------------~~~---l~~~~~~~p~~~Ql~g~~----   56 (311)
                      |+..+.+.| .+++.|++++.+... +..                       ..+   +.....+.|+++||++++    
T Consensus        70 ~~~~~a~~G-~g~i~~~~~~~~~~~g~~~pr~~~~~~d~~~in~~g~~~~g~~~~~~~~~~~~~~~~~~v~i~~~~~~~i  148 (336)
T 1f76_A           70 CIDALGAMG-FGSIEIGTVTPRPQPGNDKPRLFRLVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPV  148 (336)
T ss_dssp             CHHHHHHTT-CSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCCCBCCHHHHHHHHHHCCCCSEEEEEECCCTTSCG
T ss_pred             HHHHHHHcC-ccEEEeCCCCCCCCCCCCCcceeeccccceeeecCCCCCcCHHHHHHHHHhcccCCcEEEEecCCCCCcc
Confidence            777788899 589999999876432 100                       111   111223569999999998    


Q ss_pred             ---HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---------cceeEEEEecc
Q psy2386          57 ---PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---------EIDITVKHRIG  124 (311)
Q Consensus        57 ---~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---------~~pvsvKiR~g  124 (311)
                         +++|+++++++.+ |+|+||||++||+.+      |...+++++++.++++++++.+         ++||+||++.+
T Consensus       149 ~~~~~~~~~aa~~~~~-g~d~iein~~sP~~~------g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~  221 (336)
T 1f76_A          149 EQGKDDYLICMEKIYA-YAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPD  221 (336)
T ss_dssp             GGTHHHHHHHHHHHGG-GCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSC
T ss_pred             cccHHHHHHHHHHHhc-cCCEEEEEccCCCCC------CcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCC
Confidence               9999999999877 899999999999865      3456788999999999999988         89999999987


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc------------cccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEE
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF------------LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIII  191 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~  191 (311)
                      ++.    +++.++++.++++|+|+|++|+++..            .+|++|+.   ..+..++.++++++.++ ++|||+
T Consensus       222 ~~~----~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~---~~~~~~~~i~~i~~~~~~~ipVi~  294 (336)
T 1f76_A          222 LSE----EELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRP---LQLKSTEIIRRLSLELNGRLPIIG  294 (336)
T ss_dssp             CCH----HHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGG---GHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred             CCH----HHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCch---hHHHHHHHHHHHHHHhCCCCCEEE
Confidence            653    24689999999999999999987631            12233321   11234688999998864 699999


Q ss_pred             ecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHhh
Q psy2386         192 NGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDLN  230 (311)
Q Consensus       192 nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~~  230 (311)
                      +|||+|++|+.++++. ||+||+||+++. |||+++++.+.
T Consensus       295 ~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~~~i~~~  335 (336)
T 1f76_A          295 VGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTH  335 (336)
T ss_dssp             ESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHHHHHHhh
Confidence            9999999999999987 999999999987 99999998764

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=99.96  E-value=2.2e-28  Score=229.82  Aligned_cols=223  Identities=13%  Similarity=0.154  Sum_probs=172.6

Q ss_pred             CCHHHHHHHH-HhCCCcEEEecceeccc--cc--CC----ch-------hccc-cCCCCCCeEEEecC------------
Q psy2386           4 TDRHCRMFHR-QITRYSWLYTEMFTTQA--IL--GN----KK-------HCLD-FNAEEHPIAFQVGD------------   54 (311)
Q Consensus         4 td~~fR~l~~-~~g~~~l~~temv~a~~--l~--~~----~~-------~~l~-~~~~~~p~~~Ql~g------------   54 (311)
                      |+.....+.+ .-|..+|++||.+....  ..  +.    +.       ++.+ .|..+..+++||+-            
T Consensus        38 ~~~~~~~y~~rA~gG~Glii~e~~~v~~~g~~~~~~~~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~  117 (340)
T 3gr7_A           38 RTWHKIHYPARAVGQVGLIIVEATGVTPQGRISERDLGIWSDDHIAGLRELVGLVKEHGAAIGIQLAHAGRKSQVPGEII  117 (340)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSEECSSTTHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCSSSCCE
T ss_pred             CHHHHHHHHHHhcCCceEEEEcceEecccccCCCCCcccCCHHHHHHHHHHHHHHHhCCCeEEEEeccCCCccCCCCCcc
Confidence            5555555552 22446899999876543  21  11    11       1111 25667889999851            


Q ss_pred             -----------CC------------HHHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHH
Q psy2386          55 -----------NE------------PKKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLV  102 (311)
Q Consensus        55 -----------~~------------~~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~  102 (311)
                                 ..            .++|++||++++++|||+||||++|         |..|.+.+.||++++++++++
T Consensus       118 ~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~  197 (340)
T 3gr7_A          118 APSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFL  197 (340)
T ss_dssp             ESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHH
T ss_pred             CCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHH
Confidence                       01            3689999999999999999999995         999999999999999999999


Q ss_pred             HHHHHHHhccccceeEEEEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         103 SDCIKAMRDSVEIDITVKHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       103 ~~iv~~v~~~~~~pvsvKiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      .||+++|+++++.||+||++....  ...+.++..++++.++++|+|+|++|.+......     ....+..++++++++
T Consensus       198 ~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~-----~~~~~~~~~~~~~~i  272 (340)
T 3gr7_A          198 GEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPAR-----MNVYPGYQVPFAELI  272 (340)
T ss_dssp             HHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCC-----CCCCTTTTHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCC-----CCCCccccHHHHHHH
Confidence            999999999999999999997421  1122346789999999999999999954211110     011223578999999


Q ss_pred             HHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         181 KKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       181 ~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      ++.+ ++||++||||.|++++.++++.  ||+||+||+++.||++++++.+.+-
T Consensus       273 k~~~-~iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~~l~  325 (340)
T 3gr7_A          273 RREA-DIPTGAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAARELG  325 (340)
T ss_dssp             HHHT-TCCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTT
T ss_pred             HHHc-CCcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHHHCC
Confidence            9998 8999999999999999999975  9999999999999999999988653

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=99.96  E-value=6.3e-29  Score=237.11  Aligned_cols=172  Identities=13%  Similarity=0.153  Sum_probs=140.4

Q ss_pred             CCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc------
Q psy2386          45 EHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV------  113 (311)
Q Consensus        45 ~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~------  113 (311)
                      ..|+++||+++.     +++|.++++.+.++ +|.||||++||+++      |..++++++.+.+|+++|++..      
T Consensus       181 ~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~-ad~ieiNiScPNt~------Gl~~lq~~~~l~~ll~aV~~~~~~~~~~  253 (415)
T 3i65_A          181 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRY-ADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKN  253 (415)
T ss_dssp             TCEEEEEECCCTTCSCHHHHHHHHHHHHGGG-CSEEEEECCCCC--------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEeccccCccccHHHHHHHHHHHHhh-CCEEEEECCCCCCC------CcccccCHHHHHHHHHHHHHHHHhhccc
Confidence            457999999998     89999999999987 89999999999984      7889999999999999998862      


Q ss_pred             --------------cce-eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc----------cccCCCCcCCC
Q psy2386         114 --------------EID-ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF----------LKKLNPKQNRK  168 (311)
Q Consensus       114 --------------~~p-vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~----------~~G~~g~~~~~  168 (311)
                                    ++| |+||++.++++.    ++.++++.++++|+|+|++|+++..          .+|+||+.   
T Consensus       254 ~~~~~~~~~~~~~~~~P~V~VKi~pd~~~~----~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a---  326 (415)
T 3i65_A          254 NIMNDEFLWFNTTKKKPLVFVKLAPDLNQE----QKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAK---  326 (415)
T ss_dssp             CCSCHHHHCCSSSSSCCEEEEEECSCCCHH----HHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGG---
T ss_pred             ccccccccccccCCCCCeEEEEecCCCCHH----HHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCcc---
Confidence                          689 999999988652    4689999999999999999998742          24566541   


Q ss_pred             CCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHhh
Q psy2386         169 IPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDLN  230 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~~  230 (311)
                      ..+..+++|+++++.+. ++|||++|||.|++|+.+++.. ||+|||||+++.+ ||++.++.+.
T Consensus       327 ~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~~~~~i~~~  391 (415)
T 3i65_A          327 LKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRE  391 (415)
T ss_dssp             GHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGGHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHHHHHHHHHH
Confidence            11234589999999874 5999999999999999999987 9999999999776 9999887654

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=99.96  E-value=2.4e-28  Score=235.81  Aligned_cols=172  Identities=12%  Similarity=0.121  Sum_probs=145.4

Q ss_pred             CCCeEEEecCCC-----HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-------
Q psy2386          45 EHPIAFQVGDNE-----PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-------  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~-----~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-------  112 (311)
                      ..|+++||+|++     +++|+++++.+.+ ++|+||||++||+++      |..++++++.+.+|+++|+++       
T Consensus       179 ~~~vgvni~~~~~~~~~~~dy~~~a~~l~~-~aD~ieiNiscPnt~------Glr~lq~~~~l~~il~~v~~~~~~~~~~  251 (443)
T 1tv5_A          179 KHIVGVSIGKNKDTVNIVDDLKYCINKIGR-YADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKN  251 (443)
T ss_dssp             TCEEEEEECCCTTCSCHHHHHHHHHHHHGG-GCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC--
T ss_pred             CceEEEEecCcccchHHHHHHHHHHHHHhc-CCCEEEEeccCCCCc------ccccccCHHHHHHHHHHHHHHHhhhccc
Confidence            468999999998     9999999999987 699999999999974      788899999999999999864       


Q ss_pred             -------------------------------------------ccce-eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCE
Q psy2386         113 -------------------------------------------VEID-ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRT  148 (311)
Q Consensus       113 -------------------------------------------~~~p-vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~  148 (311)
                                                                 .++| |+||++.+++++    ++.++++.++++|+|+
T Consensus       252 ~~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~e----d~~~iA~~~~~aGaDg  327 (443)
T 1tv5_A          252 NIMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQE----QKKEIADVLLETNIDG  327 (443)
T ss_dssp             ------------------------------------CCCCSSSSSCCEEEEEECSCCCHH----HHHHHHHHHHHTTCSE
T ss_pred             CccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHH----HHHHHHHHHHHcCCCE
Confidence                                                       3678 999999987642    4689999999999999


Q ss_pred             EEEecCccc----------cccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         149 FIVHARNAF----------LKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       149 itvh~Rt~~----------~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      |++|+++..          .+|+||+.   ..+..+++++++++.++ ++|||++|||.|++|+.+++.. ||+||+||+
T Consensus       328 I~v~ntt~~~~d~~~~~~~~GGlSG~~---~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigra  404 (443)
T 1tv5_A          328 MIISNTTTQINDIKSFENKKGGVSGAK---LKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSC  404 (443)
T ss_dssp             EEECCCBSCCCCCGGGTTCCSEEEEHH---HHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHH
T ss_pred             EEEECCCcccccccccccccCCcCCCc---chHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHH
Confidence            999998742          23455431   11234788999999874 6999999999999999999987 999999999


Q ss_pred             hhh-CCcchHHhHhh
Q psy2386         217 AYK-NPFLMSNFDLN  230 (311)
Q Consensus       217 ~l~-~P~i~~~~~~~  230 (311)
                      ++. +||++.++.+.
T Consensus       405 ll~~gP~l~~~i~~~  419 (443)
T 1tv5_A          405 LVFNGMKSAVQIKRE  419 (443)
T ss_dssp             HHHHGGGHHHHHHHH
T ss_pred             HHhcChHHHHHHHHH
Confidence            775 99999888753

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=1e-27  Score=243.83  Aligned_cols=213  Identities=15%  Similarity=0.177  Sum_probs=170.1

Q ss_pred             hCCCcEEEecceecc--ccc--CC----c------hhcc--ccCCCCCCeEEEecCC----------------------C
Q psy2386          15 ITRYSWLYTEMFTTQ--AIL--GN----K------KHCL--DFNAEEHPIAFQVGDN----------------------E   56 (311)
Q Consensus        15 ~g~~~l~~temv~a~--~l~--~~----~------~~~l--~~~~~~~p~~~Ql~g~----------------------~   56 (311)
                      .| .+|++|||++..  +..  +.    +      .+.+  ..|..+.++++||+..                      .
T Consensus        49 gg-~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~ps~~~~~~~~~~  127 (671)
T 1ps9_A           49 HG-VALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFV  127 (671)
T ss_dssp             TT-CSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSC
T ss_pred             CC-CCEEEecccccCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeccCCcccCCCCCcCCCCcccccCCCC
Confidence            35 599999999865  332  11    1      1111  1367788999999973                      4


Q ss_pred             H------------HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--
Q psy2386          57 P------------KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        57 ~------------~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--  113 (311)
                      |            ++|++||+++.++|||+||||+||         |..|.+++.||++++++++++.||+++||+++  
T Consensus       128 p~~~t~~ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~  207 (671)
T 1ps9_A          128 PHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGN  207 (671)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence            4            789999999999999999999997         99999999999999999999999999999998  


Q ss_pred             cceeEEEEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc-CcHHHHHHHHHhCCCCeEE
Q psy2386         114 EIDITVKHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI-LKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       114 ~~pvsvKiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~-~~~~~i~~i~~~~~~ipvi  190 (311)
                      ++||+||++....  ...+.++..++++.++++|+|+|++|+++.  ....+....+.++ ..+++++++++.+ ++||+
T Consensus       208 ~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-~iPvi  284 (671)
T 1ps9_A          208 DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWH--EARIPTIATPVPRGAFSWVTRKLKGHV-SLPLV  284 (671)
T ss_dssp             SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBT--TCSSCSSSTTSCTTTTHHHHHHHTTSC-SSCEE
T ss_pred             CceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCEEEcCCCcc--ccccccccccCCcchHHHHHHHHHHhc-CceEE
Confidence            7899999997321  122345678999999999999999998753  1111111112232 3468899999998 89999


Q ss_pred             EecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         191 INGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      +||||.|++++.++++.  ||+||+||+++.||++++++.+..
T Consensus       285 ~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~~g~  327 (671)
T 1ps9_A          285 TTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGR  327 (671)
T ss_dssp             ECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHTTC
T ss_pred             EeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHHcCC
Confidence            99999999999999975  999999999999999999988654

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.95  E-value=1.7e-27  Score=244.49  Aligned_cols=215  Identities=12%  Similarity=0.081  Sum_probs=169.5

Q ss_pred             HHHHHHHhCCCcEEEecceecc--ccc--CC------c-----hhcc--ccCCCCCCeEEEecCC---------------
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQ--AIL--GN------K-----KHCL--DFNAEEHPIAFQVGDN---------------   55 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~--~l~--~~------~-----~~~l--~~~~~~~p~~~Ql~g~---------------   55 (311)
                      |+..+ +.| .++++||+++.+  +..  ..      .     .+.+  ..|..+.++++||++.               
T Consensus        45 y~~ra-~gG-~Gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~  122 (729)
T 1o94_A           45 RSVKA-EGG-WAALNTEYCSINPESDDTHRLSARIWDEGDVRNLKAMTDEVHKYGALAGVELWYGGAHAPNMESRATPRG  122 (729)
T ss_dssp             HHHHH-HTT-CSEEEEEEEESSTTSCCTTSCCEECSSHHHHHHHHHHHHHHHTTTCEEEEEEECCGGGSCCTTTCCCCEE
T ss_pred             HHHHh-cCC-CCEEEEcceEecCcccCCCCCCCccCChHHhHHHHHHHHHHHhCCCeEEEEecCCCccccccccCCCCcC
Confidence            34444 345 599999999875  221  11      1     1111  2367789999999982               


Q ss_pred             ------------C------------HHHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHH
Q psy2386          56 ------------E------------PKKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLV  102 (311)
Q Consensus        56 ------------~------------~~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~  102 (311)
                                  .            .++|++||+++.++|||+||||++|         |..|.+++.||++++++++++
T Consensus       123 ps~~~~~~~~~~~p~~~t~~eI~~~i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~  202 (729)
T 1o94_A          123 PSQYASEFETLSYCKEMDLSDIAQVQQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFW  202 (729)
T ss_dssp             SSCCBCSSSTTCBCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHH
T ss_pred             CCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHH
Confidence                        1            3799999999999999999999999         999999999999999999999


Q ss_pred             HHHHHHHhccc--cceeEEEEec-------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc-cccCCCCcCCCCCc-
Q psy2386         103 SDCIKAMRDSV--EIDITVKHRI-------GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-LKKLNPKQNRKIPI-  171 (311)
Q Consensus       103 ~~iv~~v~~~~--~~pvsvKiR~-------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-~~G~~g~~~~~~~~-  171 (311)
                      .||+++||+++  +.||+||++.       ||+.   .++..++++.+++ |+|++.+|.++.. +.+... ...+.++ 
T Consensus       203 ~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~---~~~~~~~~~~l~~-~~d~~~v~~g~~~~~~~~~~-~~~~~~~~  277 (729)
T 1o94_A          203 LETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEA---EVDGQKFVEMADS-LVDMWDITIGDIAEWGEDAG-PSRFYQQG  277 (729)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCT---TTHHHHHHHHHGG-GCSEEEEEECCSTTGGGTSC-CTTTCCTT
T ss_pred             HHHHHHHHHHhCCCceEEEEEccccCcCCCCCCc---hHHHHHHHHHHHh-hcCEEEEeeecccccccccC-CccccCcc
Confidence            99999999999  7999999986       3331   1246789999887 7999999987520 111111 1112222 


Q ss_pred             CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+|++++++++.+ ++|||+||+|.|++++.++++.  ||+||+||+++.|||+++++.+.
T Consensus       278 ~~~~~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~~g  337 (729)
T 1o94_A          278 HTIPWVKLVKQVS-KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVEQG  337 (729)
T ss_dssp             TTHHHHHHHHTTC-SSCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHHTT
T ss_pred             ccHHHHHHHHHHC-CCEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHHcC
Confidence            3689999999998 8999999999999999999976  99999999999999999998764

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.95  E-value=2.4e-27  Score=241.95  Aligned_cols=218  Identities=11%  Similarity=0.062  Sum_probs=165.7

Q ss_pred             HHHHHHHhCCCcEEEecceeccccc-C---Cc-----h-------hcc-ccCCCCCCeEEEecC-----------CC---
Q psy2386           8 CRMFHRQITRYSWLYTEMFTTQAIL-G---NK-----K-------HCL-DFNAEEHPIAFQVGD-----------NE---   56 (311)
Q Consensus         8 fR~l~~~~g~~~l~~temv~a~~l~-~---~~-----~-------~~l-~~~~~~~p~~~Ql~g-----------~~---   56 (311)
                      |+....+.| .+|++||+++....- .   ..     .       ++. ..|..+.++++||+.           ..   
T Consensus        49 ~~~~~a~gG-~gliite~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~Gr~~~~~~~~~~~~~  127 (690)
T 3k30_A           49 MRKIKAEGG-WSAVCTEQVEIHATSDIAPFIELRIWDDQDLPALKRIADAIHEGGGLAGIELAHNGMNAPNQLSRETPLG  127 (690)
T ss_dssp             HHHHHHHTT-CSEEEEEEEECSGGGCCTTSCCEECSSGGGHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCTTTCCCCEE
T ss_pred             HHHHHhccC-CEEEEecceEeccccccCCCcCCccCCHHHHHHHHHHHHHHHhcCCEEEEEccCCcccccccccCCCccC
Confidence            555555666 589999999865432 1   00     0       111 125678899999993           11   


Q ss_pred             ---------------------------HHHHHHHHHHHHHcCCCEEEeccCC----------CccccccCcccCcccCCh
Q psy2386          57 ---------------------------PKKLAKSAKIIQKWGYDEINLNCGC----------PSNRVQNGFFGAILMTKP   99 (311)
Q Consensus        57 ---------------------------~~~~~~aa~~~~~~g~d~IdiN~gC----------P~~~v~~~~~G~~Ll~~~   99 (311)
                                                 .++|++||+++.++|||+||||++|          |..|.+++.||+++++++
T Consensus       128 ps~~~~~~~~~~~~~p~~~t~~ei~~~i~~f~~aA~~a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~  207 (690)
T 3k30_A          128 PGHLPVAPDTIAPIQARAMTKQDIDDLRRWHRNAVRRSIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRM  207 (690)
T ss_dssp             SSSCBSCSSCCCSCBCEECCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHT
T ss_pred             CCCCcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHH
Confidence                                       3899999999999999999998875          458889999999999999


Q ss_pred             HHHHHHHHHHhcccc--ceeEEEEeccCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386         100 LLVSDCIKAMRDSVE--IDITVKHRIGID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus       100 ~~~~~iv~~v~~~~~--~pvsvKiR~g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                      +++.||+++|+++++  .||.+|+.....  ...+.++..++++.+++ |+|++++|+++. ..... +...+.+...++
T Consensus       208 r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~~~~~~~~~l~~-~~d~~~v~~~~~-~~~~~-~~~~~~~~~~~~  284 (690)
T 3k30_A          208 RLLRELLEDTLDECAGRAAVACRITVEEEIDGGITREDIEGVLRELGE-LPDLWDFAMGSW-EGDSV-TSRFAPEGRQEE  284 (690)
T ss_dssp             HHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHHHHHHHHHHHTT-SSSEEEEECSCH-HHHTC-CTTTCCTTTTHH
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHHHHHHHHHHHHh-hcCEEEEecccc-cccCC-CCccCCccccHH
Confidence            999999999999994  566666643211  11223567899999988 899999998752 11111 111112234578


Q ss_pred             HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      +++++++.+ ++|||+||||+|++++.++++.  ||+||+||+++.|||+++++++.
T Consensus       285 ~~~~i~~~~-~~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~~~g  340 (690)
T 3k30_A          285 FVAGLKKLT-TKPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKIRDG  340 (690)
T ss_dssp             HHTTSGGGC-SSCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred             HHHHHHHHc-CCeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHHHcC
Confidence            899999998 8999999999999999999976  99999999999999999999864

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=99.95  E-value=4.1e-27  Score=221.06  Aligned_cols=164  Identities=18%  Similarity=0.226  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEec---------cCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc-
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLN---------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG-  124 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN---------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g-  124 (311)
                      .++|++||+++.++|||+||||         ++||..|.+++.||++++++++++.||+++||+++  ++||+||++.. 
T Consensus       142 i~~f~~AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~  221 (343)
T 3kru_A          142 VKAFGEAAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD  221 (343)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC
T ss_pred             HHHHHHHHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh
Confidence            3789999999999999999999         67999999999999999999999999999999999  68999999983 


Q ss_pred             CCC-CCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         125 IDD-INSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       125 ~~~-~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      |.+ ..+.++..++++.|+++ +|+|++ ||++.. +.     ....+..+|++++++++.+ ++||++||+|.|++++.
T Consensus       222 ~~~~g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~-~~-----~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~Ae  293 (343)
T 3kru_A          222 YMEGGINIDMMVEYINMIKDK-VDLIDVSSGGLLN-VD-----INLYPGYQVKYAETIKKRC-NIKTSAVGLITTQELAE  293 (343)
T ss_dssp             SSTTSCCHHHHHHHHHHHTTT-CSEEEEECCCSSC-CC-----CCCCTTTTHHHHHHHHHHH-TCEEEEESSCCCHHHHH
T ss_pred             hhccCccHHHHHHHHHHhhcc-ccEEeccCCceEe-ee-----ecccCceeehHHHHHHHhc-CcccceeeeeeHHHHHH
Confidence            322 23356788999999999 999999 576531 10     0011235789999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++++.  ||+||+||+++.||+++.++.
T Consensus       294 ~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          294 EILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             HHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             HHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence            99975  999999999999999999987

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=99.95  E-value=5.6e-27  Score=221.06  Aligned_cols=170  Identities=17%  Similarity=0.177  Sum_probs=144.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGI  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~  125 (311)
                      .++|++||+++.++|||+||||++|         |..|.+++.||++++++++++.||+++||+++  +.||+||++...
T Consensus       151 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~  230 (349)
T 3hgj_A          151 LQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATD  230 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccc
Confidence            3689999999999999999999999         99999999999999999999999999999999  789999999731


Q ss_pred             C--CCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         126 D--DINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       126 ~--~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      .  ...+.++..++++.|++.|+|+|++| +++.....     ....+..++++++++++.+ ++||+++|+|.|++++.
T Consensus       231 ~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~-----~~~~~~~~~~~~~~ir~~~-~iPVi~~Ggi~t~e~a~  304 (349)
T 3hgj_A          231 WGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVR-----IPLAPGFQVPFADAVRKRV-GLRTGAVGLITTPEQAE  304 (349)
T ss_dssp             CSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSC-----CCCCTTTTHHHHHHHHHHH-CCEEEECSSCCCHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccc-----cCCCccccHHHHHHHHHHc-CceEEEECCCCCHHHHH
Confidence            1  11224467899999999999999999 44321000     0011235789999999998 89999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      ++++.  ||+|++||+++.||+++.++.+.+-
T Consensus       305 ~~l~~G~aD~V~iGR~~lanPdl~~k~~~~l~  336 (349)
T 3hgj_A          305 TLLQAGSADLVLLGRVLLRDPYFPLRAAKALG  336 (349)
T ss_dssp             HHHHTTSCSEEEESTHHHHCTTHHHHHHHHTT
T ss_pred             HHHHCCCceEEEecHHHHhCchHHHHHHHHCC
Confidence            99975  9999999999999999999988753

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=99.95  E-value=3e-27  Score=227.37  Aligned_cols=171  Identities=10%  Similarity=0.123  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcc-cCChHHHHHHHHHHhccc------cceeEEEE
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAIL-MTKPLLVSDCIKAMRDSV------EIDITVKH  121 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~L-l~~~~~~~~iv~~v~~~~------~~pvsvKi  121 (311)
                      ++|++||+++.++|||+||||+||         |..|.+++.||+++ +++++++.||+++|++++      ++||+||+
T Consensus       170 ~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRi  249 (419)
T 3l5a_A          170 QQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRA  249 (419)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEec
Confidence            689999999999999999999998         99999999999999 999999999999999987      67999999


Q ss_pred             eccCC-C---CCcHHHHHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCc-CcHHHHHHHHHhCC-CCeEEEecC
Q psy2386         122 RIGID-D---INSYDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPI-LKYNFVYNLKKDFP-ELEIIINGG  194 (311)
Q Consensus       122 R~g~~-~---~~~~~~~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~-~~~~~i~~i~~~~~-~ipvi~nGg  194 (311)
                      +.... +   ..+.+++.++++.|++ +|+|+|+||+++.....+...   ..++ .++++++++++.++ ++|||+|||
T Consensus       250 s~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~---~~g~~~~~~~a~~Ik~~v~~~iPVI~~Gg  326 (419)
T 3l5a_A          250 TPEETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSR---TPGDHFGRPVNQIVYEHLAGRIPLIASGG  326 (419)
T ss_dssp             CSCEEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCC---CSSTTTTSBHHHHHHHHHTTSSCEEECSS
T ss_pred             ccccccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccC---CCCccccHHHHHHHHHHcCCCCeEEEECC
Confidence            87211 0   1124568899999999 999999999986411111110   1112 35778889998764 599999999


Q ss_pred             CCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         195 IKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       195 I~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      |.|++++.++++.||+|++||+++.||++++++.+..
T Consensus       327 I~t~e~Ae~~L~~aDlVaiGR~~IanPdlv~ki~~G~  363 (419)
T 3l5a_A          327 INSPESALDALQHADMVGMSSPFVTEPDFVHKLAEQR  363 (419)
T ss_dssp             CCSHHHHHHHGGGCSEEEESTHHHHCTTHHHHHHTTC
T ss_pred             CCCHHHHHHHHHhCCcHHHHHHHHHCcHHHHHHHcCC
Confidence            9999999999977999999999999999999998653

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.95  E-value=4.6e-27  Score=249.11  Aligned_cols=170  Identities=14%  Similarity=0.221  Sum_probs=143.1

Q ss_pred             CCCeEEEe-cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQV-GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql-~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.|+++|+ +|++++++.++++++++.|+|+|+||+|||+. ...+++|++++++++++.++++++++.+++||+||++.
T Consensus       634 ~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~-~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~  712 (1025)
T 1gte_A          634 DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHG-MGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP  712 (1025)
T ss_dssp             TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCC-CC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC-CCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCC
Confidence            57899988 68999999999999999999999999999998 66778999999999999999999999999999999997


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEE----------------------ecCccccccCCCCcCCCCCcCc----HHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIV----------------------HARNAFLKKLNPKQNRKIPILK----YNFV  177 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itv----------------------h~Rt~~~~G~~g~~~~~~~~~~----~~~i  177 (311)
                      +.++      +.++++.++++|+|+|++                      |+|+. .+|++|+       +.    ++.+
T Consensus       713 ~~~~------~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~-~gg~sg~-------~~~~~~~~~v  778 (1025)
T 1gte_A          713 NVTD------IVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTT-YGGVSGT-------AIRPIALRAV  778 (1025)
T ss_dssp             CSSC------HHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBC-CEEEESG-------GGHHHHHHHH
T ss_pred             ChHH------HHHHHHHHHHcCCCEEEEecccccccccccccccccccccccccc-CCCCCcc-------cchhHHHHHH
Confidence            5442      578999999999999999                      55543 4555544       44    4789


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh-CCcchHHhHh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK-NPFLMSNFDL  229 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~-~P~i~~~~~~  229 (311)
                      +++++.++++|||++|||+|++|+.+++.. ||+|||||+++. +|.++.++.+
T Consensus       779 ~~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~  832 (1025)
T 1gte_A          779 TTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCT  832 (1025)
T ss_dssp             HHHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHH
T ss_pred             HHHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHH
Confidence            999998867999999999999999999986 999999999998 5556666553

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=99.95  E-value=7.3e-27  Score=216.34  Aligned_cols=172  Identities=19%  Similarity=0.303  Sum_probs=143.7

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.|+++||+|++++++.++++.+.+ .|+|+||||++||+.+..    |..+..+++++.++++++++.+++||.||++.
T Consensus        98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g----~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~  173 (311)
T 1ep3_A           98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHG----GQAFGTDPEVAAALVKACKAVSKVPLYVKLSP  173 (311)
T ss_dssp             TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGT----TEEGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCc----hhhhcCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            7899999999999999999999998 899999999999996422    56667899999999999999989999999998


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEE---------ecCccc------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIV---------HARNAF------LKKLNPKQNRKIPILKYNFVYNLKKDFPELE  188 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itv---------h~Rt~~------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip  188 (311)
                      ++++      ..++++.++++|+|+|++         |.|+..      .+|++|+.   ..+..+++++++++.+ ++|
T Consensus       174 ~~~~------~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~---~~~~~~~~i~~i~~~~-~ip  243 (311)
T 1ep3_A          174 NVTD------IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPA---IKPVALKLIHQVAQDV-DIP  243 (311)
T ss_dssp             CSSC------SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGG---GHHHHHHHHHHHHTTC-SSC
T ss_pred             ChHH------HHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCcc---chHHHHHHHHHHHHhc-CCC
Confidence            7743      357899999999999999         444321      12344331   0011358899999987 899


Q ss_pred             EEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         189 IIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       189 vi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ||++|||.|++|+.++++. ||+||+||+++.+|+++.++.+.
T Consensus       244 via~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~  286 (311)
T 1ep3_A          244 IIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDK  286 (311)
T ss_dssp             EEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHH
T ss_pred             EEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHH
Confidence            9999999999999999976 99999999999999999887643

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=99.94  E-value=8.9e-27  Score=220.00  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccC-
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGI-  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~-  125 (311)
                      .++|++||+++.++|||+||||++|         |..|.+++.||++++++++++.||+++||++++. ||+||++... 
T Consensus       160 i~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~  239 (361)
T 3gka_A          160 VAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGD  239 (361)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccc
Confidence            3689999999999999999999999         9999999999999999999999999999999843 9999999731 


Q ss_pred             ----CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         126 ----DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       126 ----~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                          ...+..++..++++.|+++|+|+|++|+++.   |   .          ++++++++.+ ++|||+|||| |++++
T Consensus       240 ~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~---~---~----------~~~~~ik~~~-~iPvi~~Ggi-t~e~a  301 (361)
T 3gka_A          240 AHTMGDSDPAATFGHVARELGRRRIAFLFARESFG---G---D----------AIGQQLKAAF-GGPFIVNENF-TLDSA  301 (361)
T ss_dssp             SSSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---T---T----------CCHHHHHHHH-CSCEEEESSC-CHHHH
T ss_pred             cCCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC---C---H----------HHHHHHHHHc-CCCEEEeCCC-CHHHH
Confidence                1222345678999999999999999998861   1   1          3478888888 7999999999 99999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .++++.  ||+||+||+++.|||+++++.+.
T Consensus       302 ~~~l~~G~aD~V~iGR~~ladPdl~~k~~~g  332 (361)
T 3gka_A          302 QAALDAGQADAVAWGKLFIANPDLPRRFKLN  332 (361)
T ss_dssp             HHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred             HHHHHcCCccEEEECHHhHhCcHHHHHHHhC
Confidence            999975  99999999999999999999864

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=99.94  E-value=1.1e-26  Score=219.41  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccCC-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGID-  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~~-  126 (311)
                      ++|++||+++.++|||+||||++|         |..|.+.+.||++++++++++.||+++||++++. ||+||++.... 
T Consensus       153 ~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~  232 (362)
T 4ab4_A          153 EAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA  232 (362)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS
T ss_pred             HHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc
Confidence            689999999999999999999999         9999999999999999999999999999999843 99999997421 


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 ----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                          ..+..++..++++.|+++|+|+|++|+++.   |   .          ++++++++.+ ++|||+|||| |++++.
T Consensus       233 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~---~---~----------~~~~~ik~~~-~iPvi~~Ggi-t~e~a~  294 (362)
T 4ab4_A          233 HDMGDADRAETFTYVARELGKRGIAFICSREREA---D---D----------SIGPLIKEAF-GGPYIVNERF-DKASAN  294 (362)
T ss_dssp             SSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCC---T---T----------CCHHHHHHHH-CSCEEEESSC-CHHHHH
T ss_pred             cccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCC---C---H----------HHHHHHHHHC-CCCEEEeCCC-CHHHHH
Confidence                112244678999999999999999998861   1   1          2478888888 7999999999 999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.  ||+||+||+++.|||++.++.+.
T Consensus       295 ~~l~~g~aD~V~iGR~~lanPdl~~k~~~g  324 (362)
T 4ab4_A          295 AALASGKADAVAFGVPFIANPDLPARLAAD  324 (362)
T ss_dssp             HHHHTTSCSEEEESHHHHHCTTHHHHHHTT
T ss_pred             HHHHcCCccEEEECHHhHhCcHHHHHHHcC
Confidence            99975  99999999999999999998863

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=99.94  E-value=6.5e-26  Score=214.85  Aligned_cols=168  Identities=13%  Similarity=0.181  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~  126 (311)
                      ++|++||+++.++|||+||||++         ||..|.+++.||++|.++++++.||+++||+++  ++||.||++....
T Consensus       158 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~  237 (363)
T 3l5l_A          158 QDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEY  237 (363)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECS
T ss_pred             HHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhc
Confidence            68999999999999999999998         699999999999999999999999999999998  5899999997421


Q ss_pred             C--C-CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC-CCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 D--I-NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR-KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ~--~-~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~-~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      .  . .+.++..++++.|+++|+|+|++|+++.. ..    ... ..+..++++++++++.+ ++||+++|||.|++++.
T Consensus       238 ~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~-~~----~~~~~~~~~~~~~~~~ir~~~-~iPVi~~GgI~s~e~a~  311 (363)
T 3l5l_A          238 DGRDEQTLEESIELARRFKAGGLDLLSVSVGFTI-PD----TNIPWGPAFMGPIAERVRREA-KLPVTSAWGFGTPQLAE  311 (363)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCCS-SC----CCCCCCTTTTHHHHHHHHHHH-TCCEEECSSTTSHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccc-cc----cccCCCcchhHHHHHHHHHHc-CCcEEEeCCCCCHHHHH
Confidence            1  1 23457789999999999999999976421 10    000 11224789999999998 89999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++++.  ||+|++||+++.||+++.++.+.+
T Consensus       312 ~~l~~G~aD~V~iGR~~lanPdl~~k~~~~l  342 (363)
T 3l5l_A          312 AALQANQLDLVSVGRAHLADPHWAYFAAKEL  342 (363)
T ss_dssp             HHHHTTSCSEEECCHHHHHCTTHHHHHHHHT
T ss_pred             HHHHCCCccEEEecHHHHhCchHHHHHHHHc
Confidence            99975  999999999999999999998765

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=99.92  E-value=1e-24  Score=207.46  Aligned_cols=161  Identities=17%  Similarity=0.153  Sum_probs=137.5

Q ss_pred             CHHHHHHHHHHHH-HcCCCEEEeccCC---------Cccccc-cCcccC-cccCChHHHHHHHHHHhcccc-ceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQ-KWGYDEINLNCGC---------PSNRVQ-NGFFGA-ILMTKPLLVSDCIKAMRDSVE-IDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~-~~g~d~IdiN~gC---------P~~~v~-~~~~G~-~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR  122 (311)
                      .+++|++||+++. ++|||+||||++|         |..|.+ ++.||+ +++++++++.||+++||++++ .||.||++
T Consensus       172 ~i~~f~~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis  251 (379)
T 3aty_A          172 IIPLFVEGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRIS  251 (379)
T ss_dssp             HHHHHHHHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            3567889999999 9999999999996         999998 999999 999999999999999999985 48999999


Q ss_pred             cc-C----CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         123 IG-I----DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       123 ~g-~----~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      .. +    ....+.++..++++.|++.|+++|++|+++.  ..   .   .   ...+ ++++++.+ ++|||+||+| |
T Consensus       252 ~~~~~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~--~~---~---~---~~~~-~~~ir~~~-~iPvi~~G~i-t  317 (379)
T 3aty_A          252 PLNGVHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDM--VN---Q---Q---IGDV-VAWVRGSY-SGVKISNLRY-D  317 (379)
T ss_dssp             TTCCGGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCT--TS---C---C---CCCH-HHHHHTTC-CSCEEEESSC-C
T ss_pred             cccccccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCc--CC---C---C---ccHH-HHHHHHHC-CCcEEEECCC-C
Confidence            73 2    1233455678999999999999999998752  11   0   0   1126 88999998 7999999999 9


Q ss_pred             HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.++++.  ||+||+||+++.||++++++.+.
T Consensus       318 ~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~~g  352 (379)
T 3aty_A          318 FEEADQQIREGKVDAVAFGAKFIANPDLVERAQQN  352 (379)
T ss_dssp             HHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred             HHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHHcC
Confidence            9999999975  99999999999999999998753

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=99.91  E-value=1.3e-24  Score=207.45  Aligned_cols=164  Identities=15%  Similarity=0.069  Sum_probs=133.7

Q ss_pred             HH-HHHHHHHHHHcCCCEEEeccCC---------CccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCC
Q psy2386          58 KK-LAKSAKIIQKWGYDEINLNCGC---------PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGID  126 (311)
Q Consensus        58 ~~-~~~aa~~~~~~g~d~IdiN~gC---------P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~  126 (311)
                      ++ |++||+++.++|||+||||++|         |..|.+.+.||++++++++++.||+++|+++++ .||+||++. |+
T Consensus       167 ~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~-~~  245 (407)
T 3tjl_A          167 YEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISP-WA  245 (407)
T ss_dssp             HTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT-TC
T ss_pred             HHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECc-cc
Confidence            56 9999999999999999999999         999999999999999999999999999999985 489999986 32


Q ss_pred             C------C-C---cHHHHHHHHHHH---HHcC--CCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         127 D------I-N---SYDFVRDFVGTV---SSAG--CRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       127 ~------~-~---~~~~~~e~~~~l---~~~G--~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      .      . +   ..+...++++.|   ++.|  +++|+|| +|+.. ....+      +...|+.+..+++.+ ++|||
T Consensus       246 ~~~g~~~~~d~~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~~~~~~~-~~~~~------~~~~~~~~~~ir~~~-~~PvI  317 (407)
T 3tjl_A          246 TFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSG-NVDVS------EEDQAGDNEFVSKIW-KGVIL  317 (407)
T ss_dssp             CGGGCCGGGSSSCHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTEET-TEECC------GGGCCCCSHHHHHHC-CSEEE
T ss_pred             ccCCCcccccccccHHHHHHHHHHHHhHhhcCCceeEEEEEccccCC-CCcCC------ccchhHHHHHHHHHh-CCCEE
Confidence            1      1 2   244578899999   8889  9999999 66531 11110      011234567788887 79999


Q ss_pred             EecCCCCHHHHHHHHh----h-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         191 INGGIKTKKEIDLHLN----Y-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~----~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      +||||.+.+|+.++++    . ||+||+||+++.|||++.++.+.
T Consensus       318 ~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri~~g  362 (407)
T 3tjl_A          318 KAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKLRDG  362 (407)
T ss_dssp             EESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHHHHT
T ss_pred             ecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHHHcC
Confidence            9999999998766664    4 99999999999999999999764

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.90  E-value=3.1e-23  Score=196.60  Aligned_cols=229  Identities=12%  Similarity=0.081  Sum_probs=172.2

Q ss_pred             CHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCc
Q psy2386           5 DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPS   83 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~   83 (311)
                      +.+|++.|+++| ..+++|+|.+ .++.    .... ...+.|+.+||++ +|++...+++++++++|++.|+||++||.
T Consensus        99 e~~la~aa~~~G-~~~~~s~~~s-~~le----~v~~-~~~~~~~~~QLy~~~d~~~~~~~~~ra~~aG~~ai~it~d~p~  171 (368)
T 2nli_A           99 EAGTARAVSEFG-TIMSISAYSG-ATFE----EISE-GLNGGPRWFQIYMAKDDQQNRDILDEAKSDGATAIILTADSTV  171 (368)
T ss_dssp             HHHHHHHHHHHT-CCEEECTTCS-SCHH----HHHH-HHTTCCEEEEECCBSSHHHHHHHHHHHHHTTCSCEEEESBCC-
T ss_pred             HHHHHHHHHHcC-CCEEeechHh-HHHH----HHHH-hCCCCCEEEEEeccCCHHHHHHHHHHHHHCCCCEEEEcCCCCc
Confidence            479999999999 4899999986 3431    1111 2236899999998 89999999999999999999999999998


Q ss_pred             c------------------ccc----cCcccCcc---c--CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386          84 N------------------RVQ----NGFFGAIL---M--TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        84 ~------------------~v~----~~~~G~~L---l--~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      .                  +..    ..+.|+.+   +  .|+++..++++++++.+++||.||.-   .       ..+
T Consensus       172 ~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~~~~~~d~~~~~~~i~~lr~~~~~PvivK~v---~-------~~e  241 (368)
T 2nli_A          172 SGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNNIYGASKQKISPRDIEEIAGHSGLPVFVKGI---Q-------HPE  241 (368)
T ss_dssp             --CBC--------CCSCCHHHHHHHTTSGGGC-----CTTBCSBCCHHHHHHHHHHSSSCEEEEEE---C-------SHH
T ss_pred             ccchhHHHhhcccCcchhhhhhcccccCCCCchHHhhhhccCchhhHHHHHHHHHHcCCCEEEEcC---C-------CHH
Confidence            2                  111    03456665   3  37888889999999999999999942   1       146


Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      .++.++++|+|+|+|+++.. .       +.+.++..|+.+.++++.++ ++|||++|||+|++|+.+++.. ||+||||
T Consensus       242 ~a~~a~~~Gad~I~vs~~gg-r-------~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~iG  313 (368)
T 2nli_A          242 DADMAIKRGASGIWVSNHGA-R-------QLYEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVALG  313 (368)
T ss_dssp             HHHHHHHTTCSEEEECCGGG-T-------SCSSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHcCCCEEEEcCCCc-C-------CCCCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            78999999999999965432 1       11234578999999998774 5999999999999999999987 9999999


Q ss_pred             hhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhH
Q psy2386         215 REAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHM  273 (311)
Q Consensus       215 Ra~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~  273 (311)
                      |++     ++.....   +      .....+.++.+.++++..+. .|. ..+..+++..
T Consensus       314 r~~-----l~~~~~~---G------~~gv~~~l~~l~~el~~~m~~~G~-~~i~~l~~~~  358 (368)
T 2nli_A          314 RPV-----LFGLALG---G------WQGAYSVLDYFQKDLTRVMQLTGS-QNVEDLKGLD  358 (368)
T ss_dssp             HHH-----HHHHHHH---H------HHHHHHHHHHHHHHHHHHHHHHTC-SSHHHHHTCC
T ss_pred             HHH-----HHHHHhc---C------hHHHHHHHHHHHHHHHHHHHHhCC-cCHHHhcccc
Confidence            955     4443321   1      12345778888888888777 775 4677777654

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=99.89  E-value=5.9e-23  Score=193.97  Aligned_cols=175  Identities=13%  Similarity=0.091  Sum_probs=129.3

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHc---CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKW---GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~---g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      ..+.|+++||+|++++++++.++.+.+.   ++|.||||++||+.+     .|..+..+++.+.++++++++.+..|+.+
T Consensus       124 ~~~~pvivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~-----g~~~l~~~~~~~~~i~~~v~~~~~~pv~v  198 (354)
T 3tjx_A          124 YGKKPLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVP-----GKPQVAYDFDAMRQCLTAVSEVYPHSFGV  198 (354)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC--------------CTTSHHHHHHHHHHHHHHCCSCEEE
T ss_pred             cCCceEEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCc-----chhhhccCHHHHHHHHHHHHHHhhccccc
Confidence            4478999999999999999888877653   689999999999875     46788899999999999999999999999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEE----------ecCcc--------ccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIV----------HARNA--------FLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itv----------h~Rt~--------~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      |++.++++..    ....+..+.+.+ ++.++.          +.++.        ..+|+||+..   .+..+++++++
T Consensus       199 K~~p~~~~~~----~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~---~~~a~~~v~~~  271 (354)
T 3tjx_A          199 KMPPYFDFAA----FDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYV---LPTALANINAF  271 (354)
T ss_dssp             EECCCCSHHH----HHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGG---HHHHHHHHHHH
T ss_pred             ccCCCCCchh----HHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhh---HHHHHHHHHHH
Confidence            9999886532    334555555554 333331          11221        1456777622   12234667788


Q ss_pred             HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHh
Q psy2386         181 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDL  229 (311)
Q Consensus       181 ~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~  229 (311)
                      ++..+++|||++|||.|++|+.+++.. ||+||||||+ +.+|+++.++.+
T Consensus       272 ~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~  322 (354)
T 3tjx_A          272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTS  322 (354)
T ss_dssp             HHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHH
T ss_pred             HHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHH
Confidence            887778999999999999999999976 9999999996 689999988765

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.89  E-value=1e-22  Score=194.41  Aligned_cols=232  Identities=14%  Similarity=0.142  Sum_probs=168.4

Q ss_pred             CCCCCHH-------HHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecC-CCHHHHHHHHHHHHHcCC
Q psy2386           1 MNLTDRH-------CRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGD-NEPKKLAKSAKIIQKWGY   72 (311)
Q Consensus         1 ~~~td~~-------fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~   72 (311)
                      ||+|+.+       +++.|+++| ..+++|+|.+ .++.    +... ...+.|+.+||++ .|++...+.++++++.|+
T Consensus       102 mg~~~l~~~~~e~~laraA~~~G-~~~~~s~~~s-~~le----~v~~-~~~~~~~~~QLy~~~d~~~~~~~~~ra~~~G~  174 (392)
T 2nzl_A          102 TAMQRMAHVDGELATVRACQSLG-TGMMLSSWAT-SSIE----EVAE-AGPEALRWLQLYIYKDREVTKKLVRQAEKMGY  174 (392)
T ss_dssp             CSCGGGTSTTHHHHHHHHHHHHT-CEEEECTTCS-SCHH----HHHH-HCTTSEEEEEECCBSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccccchHHHHHHHHHHHcC-CCeeccchHH-HHHH----HHHH-hcCCCcEEEEEEecCCHHHHHHHHHHHHHCCC
Confidence            5677776       999999999 4799999886 3331    1111 2236899999987 799999999999999999


Q ss_pred             CEEEeccCCCcc---------------cc-----c------cC----cccC---cccC---ChHHHHHHHHHHhccccce
Q psy2386          73 DEINLNCGCPSN---------------RV-----Q------NG----FFGA---ILMT---KPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        73 d~IdiN~gCP~~---------------~v-----~------~~----~~G~---~Ll~---~~~~~~~iv~~v~~~~~~p  116 (311)
                      +.|+||++||..               ++     .      +.    +.|+   +++.   +|++..++++++++.+++|
T Consensus       175 ~al~itvd~p~~g~R~~d~r~~~~lp~~~~~~n~~~~~~~~~p~~~~~~g~~~~~~~~~~~d~~~~~~~i~~lr~~~~~P  254 (392)
T 2nzl_A          175 KAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLP  254 (392)
T ss_dssp             CCEEEECSCSSCCCCHHHHHHTCCCCTTCCCTTC-----------------CHHHHHHHHBCTTCCHHHHHHHC--CCSC
T ss_pred             CEEEEeCCCCCccchhHhHhhccCCccccchhhhhhhhcccCccccccCcchHHHHHhhcCChHHHHHHHHHHHHhhCCC
Confidence            999999999985               22     1      00    1233   3444   8888888999999999999


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGI  195 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI  195 (311)
                      |.||.   +..       .+.++.++++|+|+|+|+++..        .+.+.++..|+.+.++++.+. ++|||++|||
T Consensus       255 vivKg---v~~-------~e~A~~a~~aGad~I~vs~~gg--------r~~~~g~~~~~~l~~v~~av~~~ipVia~GGI  316 (392)
T 2nzl_A          255 IVAKG---ILR-------GDDAREAVKHGLNGILVSNHGA--------RQLDGVPATIDVLPEIVEAVEGKVEVFLDGGV  316 (392)
T ss_dssp             EEEEE---ECC-------HHHHHHHHHTTCCEEEECCGGG--------TSSTTCCCHHHHHHHHHHHHTTSSEEEECSSC
T ss_pred             EEEEe---cCC-------HHHHHHHHHcCCCEEEeCCCCC--------CcCCCCcChHHHHHHHHHHcCCCCEEEEECCC
Confidence            99994   221       4668999999999999965532        112234578999999998763 5999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHh
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRH  272 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~  272 (311)
                      +|.+|+.+++.. ||+|||||+++     +.....   +      .....+.++.+.++++..+. .|. ..+..+++.
T Consensus       317 ~~g~Dv~kalalGAd~V~iGr~~l-----~~~~~~---g------~~gv~~~l~~l~~el~~~m~~~G~-~~i~el~~~  380 (392)
T 2nzl_A          317 RKGTDVLKALALGAKAVFVGRPIV-----WGLAFQ---G------EKGVQDVLEILKEEFRLAMALSGC-QNVKVIDKT  380 (392)
T ss_dssp             CSHHHHHHHHHTTCSEEEECHHHH-----HHHHHH---H------HHHHHHHHHHHHHHHHHHHHHHTC-SBGGGCCGG
T ss_pred             CCHHHHHHHHHhCCCeeEECHHHH-----HHHHhc---C------hHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHhhh
Confidence            999999999987 99999999665     332211   1      12345677788888887777 664 345555443

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.88  E-value=1.2e-21  Score=184.73  Aligned_cols=232  Identities=11%  Similarity=0.166  Sum_probs=159.5

Q ss_pred             CHHHHHHHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEecc
Q psy2386           5 DRHCRMFHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNC   79 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~   79 (311)
                      +.++++.|+++| ..+++++|.+.  +.. .   ..++++....+.|+++|+. |.+++.+.++   ++..|+|+|+||+
T Consensus        75 ~~~~a~aa~~~G-~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~pv~~~i~~~~~~~~~~~~---~~~~gad~i~i~~  148 (349)
T 1p0k_A           75 NKSLARAASQAG-IPLAVGSQMSA--LKDPSERLSYEIVRKENPNGLIFANLGSEATAAQAKEA---VEMIGANALQIHL  148 (349)
T ss_dssp             HHHHHHHHHHHT-CCEECCCCTTT--TTCHHHHHHHHHHHHHCSSSCEEEEEETTCCHHHHHHH---HHHTTCSEEEEEE
T ss_pred             HHHHHHHHHHcC-CcEEeccchhc--ccCcccccceehhhhhCCCceeEEeecCCCCHHHHHHH---HHhcCCCeEEecc
Confidence            789999999999 47899998764  211 1   1123333445789999999 8899887654   5567999999999


Q ss_pred             CCCccccccCcccCcccCChHH--HHHHHHHHhccccceeEEEEe-ccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecC
Q psy2386          80 GCPSNRVQNGFFGAILMTKPLL--VSDCIKAMRDSVEIDITVKHR-IGIDDINSYDFVRDFVGTVSSAGCRTFIV--HAR  154 (311)
Q Consensus        80 gCP~~~v~~~~~G~~Ll~~~~~--~~~iv~~v~~~~~~pvsvKiR-~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~R  154 (311)
                      +||+......  |     ++++  +.++++++++.+++||.+|+. .+++        .+.++.+.++|+|+|++  ||+
T Consensus       149 ~~~~~~~~~~--~-----~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~--------~~~a~~a~~~Gad~I~v~~~gg  213 (349)
T 1p0k_A          149 NVIQEIVMPE--G-----DRSFSGALKRIEQICSRVSVPVIVKEVGFGMS--------KASAGKLYEAGAAAVDIGGYGG  213 (349)
T ss_dssp             CTTTTC---------------CTTHHHHHHHHHHHCSSCEEEEEESSCCC--------HHHHHHHHHHTCSEEEEEC---
T ss_pred             cchhhhcCCC--C-----CcchHHHHHHHHHHHHHcCCCEEEEecCCCCC--------HHHHHHHHHcCCCEEEEcCCCC
Confidence            9997643321  1     4443  778999999989999999984 3332        36688999999999999  777


Q ss_pred             cccc-----ccCCC-CcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         155 NAFL-----KKLNP-KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       155 t~~~-----~G~~g-~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      |.+.     ....+ ......++..++.+.++++.++++|||++|||+|++|+.+++.. ||+|||||+++..+.     
T Consensus       214 t~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~-----  288 (349)
T 1p0k_A          214 TNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKALT-----  288 (349)
T ss_dssp             ------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH-----
T ss_pred             cchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh-----
Confidence            5211     00000 00012344678899999887657999999999999999999976 999999998765431     


Q ss_pred             HhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHh
Q psy2386         228 DLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRH  272 (311)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~  272 (311)
                      ..   +      +....+.++.+.+++...+. .|. ..+..++++
T Consensus       289 ~~---g------~~~~~~~~~~~~~~l~~~m~~~G~-~~i~el~~~  324 (349)
T 1p0k_A          289 DS---G------EEGLLEEIQLILEELKLIMTVLGA-RTIADLQKA  324 (349)
T ss_dssp             HH---H------HHHHHHHHHHHHHHHHHHHHHHTC-CBHHHHTTC
T ss_pred             hc---C------HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHhhC
Confidence            10   1      12245677788888887777 674 467777765

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.87  E-value=2.6e-21  Score=183.66  Aligned_cols=234  Identities=12%  Similarity=0.105  Sum_probs=172.2

Q ss_pred             CCCCCHH-------HHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEec-CCCHHHHHHHHHHHHHcCC
Q psy2386           1 MNLTDRH-------CRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVG-DNEPKKLAKSAKIIQKWGY   72 (311)
Q Consensus         1 ~~~td~~-------fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~   72 (311)
                      ||+|+++       |++.|+++|. .+++|+|.+. .+    +++....+  .|..+||+ ++|++...+.++.+++.|+
T Consensus        79 mg~~~l~~~~~e~a~a~aa~~~G~-~~~~s~~~~~-~i----eev~~~~~--~~~~~QLy~~~d~~~~~~~~~~a~~~G~  150 (370)
T 1gox_A           79 TAMQKMAHPEGEYATARAASAAGT-IMTLSSWATS-SV----EEVASTGP--GIRFFQLYVYKDRNVVAQLVRRAERAGF  150 (370)
T ss_dssp             CSCGGGTCTTHHHHHHHHHHHTTC-CEEECTTCSS-CH----HHHHTTCC--CCEEEEECCBSSHHHHHHHHHHHHHTTC
T ss_pred             cchhhhccchHHHHHHHHHHHcCC-CeeccCCCCC-CH----HHHHhhcC--CCceEEEecCCCchHHHHHHHHHHHCCC
Confidence            6788887       9999999994 7999998853 12    11221122  78999996 8999999999999999999


Q ss_pred             CEEEeccCCCcc---------------c-----ccc-------CcccCcc------cCChHHHHHHHHHHhccccceeEE
Q psy2386          73 DEINLNCGCPSN---------------R-----VQN-------GFFGAIL------MTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        73 d~IdiN~gCP~~---------------~-----v~~-------~~~G~~L------l~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      +.|+||++||..               +     +.+       ...|+.+      +.+|.+..+.++++++.+++||.+
T Consensus       151 ~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~~~pv~v  230 (370)
T 1gox_A          151 KAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGLSSYVAGQIDRSLSWKDVAWLQTITSLPILV  230 (370)
T ss_dssp             CEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------HHHHHHHTBCTTCCHHHHHHHHHHCCSCEEE
T ss_pred             CEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhccccccCccHHHHHHhhcCccchHHHHHHHHHHhCCCEEE
Confidence            999999999975               1     112       2345554      557776677899999999999999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTK  198 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~  198 (311)
                      |....          .+.++.+.++|+|+|+|.+... .       +.+..+.+++.+.++++.++ ++|||++|||+|.
T Consensus       231 K~~~~----------~e~a~~a~~~Gad~I~vs~~gg-r-------~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~~  292 (370)
T 1gox_A          231 KGVIT----------AEDARLAVQHGAAGIIVSNHGA-R-------QLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG  292 (370)
T ss_dssp             ECCCS----------HHHHHHHHHTTCSEEEECCGGG-T-------SSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred             EecCC----------HHHHHHHHHcCCCEEEECCCCC-c-------cCCCcccHHHHHHHHHHHhCCCCEEEEECCCCCH
Confidence            98732          3668899999999999943211 0       11223468999999999875 6999999999999


Q ss_pred             HHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHH
Q psy2386         199 KEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLG  275 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~  275 (311)
                      +|+.+++.. ||+|||||+++..     ....   +      .....+.++.+.++++..+. .|. ..+..++++...
T Consensus       293 ~D~~k~l~~GAdaV~iGr~~l~~-----~~~~---G------~~gv~~~~~~l~~el~~~m~~~G~-~~i~el~~~~l~  356 (370)
T 1gox_A          293 TDVFKALALGAAGVFIGRPVVFS-----LAAE---G------EAGVKKVLQMMRDEFELTMALSGC-RSLKEISRSHIA  356 (370)
T ss_dssp             HHHHHHHHHTCSEEEECHHHHHH-----HHHH---H------HHHHHHHHHHHHHHHHHHHHHHTC-SBTTTCCGGGEE
T ss_pred             HHHHHHHHcCCCEEeecHHHHHH-----Hhhc---c------HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHhhhccee
Confidence            999999987 9999999987642     1111   1      12245678888888888777 775 467777777543

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.85  E-value=5.5e-21  Score=188.05  Aligned_cols=229  Identities=14%  Similarity=0.187  Sum_probs=169.4

Q ss_pred             CCHHHHHHHHH--hCCCcEEEeccee-cccccCCchhccccC-CCCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEec
Q psy2386           4 TDRHCRMFHRQ--ITRYSWLYTEMFT-TQAILGNKKHCLDFN-AEEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLN   78 (311)
Q Consensus         4 td~~fR~l~~~--~g~~~l~~temv~-a~~l~~~~~~~l~~~-~~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN   78 (311)
                      ++.++++.|++  +| ..+++|||.+ +...      +.... +.+.|..+||+ +.|++.+.+++++++++||++|.|+
T Consensus       208 ~e~alaraA~~~~~G-~~~~~s~~a~~s~e~------v~~~~~~~~~~~~~QLy~~~d~~~~~~~~~rae~aG~~al~it  280 (511)
T 1kbi_A          208 GEKDVARGCGQGVTK-VPQMISTLASCSPEE------IIEAAPSDKQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVT  280 (511)
T ss_dssp             THHHHHHHHHSSSSC-CCEEECTTCSSCHHH------HHHTCCCSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEE
T ss_pred             HHHHHHHHHHHhCCC-eeEEeCCcccCCHHH------HHhhcCCCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            47899999999  99 4799999943 2221      11122 34689999998 9999999999999999999999999


Q ss_pred             cCCCc----cccccC-------------------ccc-Cccc---CChHHHHHHHHHHhccccceeEEEEeccCCCCCcH
Q psy2386          79 CGCPS----NRVQNG-------------------FFG-AILM---TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSY  131 (311)
Q Consensus        79 ~gCP~----~~v~~~-------------------~~G-~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~  131 (311)
                      +.||+    ++..+.                   +.| +.++   .+|++..++++++++.+++||.||.   +..    
T Consensus       281 vd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~i~~lr~~~~~PvivKg---v~~----  353 (511)
T 1kbi_A          281 VDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLTWKDIEELKKKTKLPIVIKG---VQR----  353 (511)
T ss_dssp             CSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCCHHHHHHHHHHCSSCEEEEE---ECS----
T ss_pred             CCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhHHHHHHHHHHHhCCcEEEEe---CCC----
Confidence            99997    111111                   111 1233   5788888999999999999999993   222    


Q ss_pred             HHHHHHHHHHHHcCCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhC------CCCeEEEecCCCCHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF------PELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~------~~ipvi~nGgI~s~~da~~  203 (311)
                         .+.++.++++|+|+|+|  ||++..          ...+..|+.+.++++.+      .++|||++|||+|.+|+.+
T Consensus       354 ---~e~A~~a~~aGad~I~vs~hgG~~~----------d~~~~~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~k  420 (511)
T 1kbi_A          354 ---TEDVIKAAEIGVSGVVLSNHGGRQL----------DFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLK  420 (511)
T ss_dssp             ---HHHHHHHHHTTCSEEEECCTTTTSS----------TTCCCHHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHH
T ss_pred             ---HHHHHHHHHcCCCEEEEcCCCCccC----------CCCCchHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHH
Confidence               36689999999999999  444421          12235788888888775      2699999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHH
Q psy2386         204 HLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHML  274 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~  274 (311)
                      +|.. ||+|||||+++     +.....   +      .....+.++.+.++++..+. .|. ..+..+++++.
T Consensus       421 aLalGAdaV~iGr~~l-----~~~~~~---G------~~gv~~~l~~l~~el~~~m~~~G~-~~i~el~~~~l  478 (511)
T 1kbi_A          421 ALCLGAKGVGLGRPFL-----YANSCY---G------RNGVEKAIEILRDEIEMSMRLLGV-TSIAELKPDLL  478 (511)
T ss_dssp             HHHHTCSEEEECHHHH-----HHHHHH---H------HHHHHHHHHHHHHHHHHHHHHHTC-CBGGGCCGGGE
T ss_pred             HHHcCCCEEEECHHHH-----HHHHhc---C------hHHHHHHHHHHHHHHHHHHHHhCC-CcHHHHhHHHh
Confidence            9987 99999999655     433221   1      12345677888888888777 775 46677776654

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=99.81  E-value=3.5e-19  Score=168.29  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCC-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGID-  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~-  126 (311)
                      ++|++||++++++|||+||||++         +|..|.|+|.||+++.++.+++.||+++||++++ -+|.||+..... 
T Consensus       152 ~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~  231 (358)
T 4a3u_A          152 DDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEI  231 (358)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCB
T ss_pred             HHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCccc
Confidence            67999999999999999999987         7999999999999999999999999999999984 457777764211 


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 ----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                          ..+..+....+++.+.+.|++.+.++....  .+..+.      .....+..++++.+ ..||+ .|++.|++++.
T Consensus       232 ~g~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~------~~~~~~a~~ik~~~-~~~v~-~~g~~~~~~ae  301 (358)
T 4a3u_A          232 QGTVDSHPEQVFIPAAKMLSDLDIAFLGMREGAV--DGTFGK------TDQPKLSPEIRKVF-KPPLV-LNQDYTFETAQ  301 (358)
T ss_dssp             TTBCCSSTHHHHHHHHHHHHHHTCSEEEEECCBT--TCSSSB------CSSCCCHHHHHHHC-CSCEE-EESSCCHHHHH
T ss_pred             CCCcccchHHHHHHHHHhhhccCccccccccccc--cCcccc------cccHHHHHHHHHhc-CCcEE-EeCCCCHHHHH
Confidence                112234566788999999999999986542  111111      01123456777776 56766 56688999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.  ||.|.+||+++.||++.+++++.
T Consensus       302 ~~l~~G~aD~V~~gR~~ladPdlp~k~~~g  331 (358)
T 4a3u_A          302 AALDSGVADAISFGRPFIGNPDLPRRFFEK  331 (358)
T ss_dssp             HHHHHTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred             HHHHcCCceEeHhhHHHHhChhHHHHHHhC
Confidence            99986  99999999999999999999863

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=99.77  E-value=7.9e-19  Score=155.66  Aligned_cols=187  Identities=13%  Similarity=0.076  Sum_probs=134.2

Q ss_pred             CCCCHHHHHHHH---HhCCCcE--EEecceec-ccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEE
Q psy2386           2 NLTDRHCRMFHR---QITRYSW--LYTEMFTT-QAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEI   75 (311)
Q Consensus         2 ~~td~~fR~l~~---~~g~~~l--~~temv~a-~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~I   75 (311)
                      ..|+.+||.+|+   +||. +.  ++++|++. +..+. ..++...  .+.|+.+|+.++.+..    ++.+.+.|+|+|
T Consensus        16 ~~t~~~i~~l~~~a~~~g~-~~v~v~~~~v~~~~~~l~-~v~v~~v--~~~P~g~~~~~~k~~~----~~~A~~~Gad~I   87 (225)
T 1mzh_A           16 HLSEKEIEEFVLKSEELGI-YAVCVNPYHVKLASSIAK-KVKVCCV--IGFPLGLNKTSVKVKE----AVEAVRDGAQEL   87 (225)
T ss_dssp             TCCHHHHHHHHHHHHHTTC-SEEEECGGGHHHHHHHCS-SSEEEEE--ESTTTCCSCHHHHHHH----HHHHHHTTCSEE
T ss_pred             CCCHHHHHHHHHHHHHhCC-eEEEECHHHHHHHHHHhc-CCceeeE--ecCCCCccchhhhHHH----HHHHHHcCCCEE
Confidence            368999999998   7985 44  67888864 43332 1112111  1456666665554444    355667899999


Q ss_pred             E--eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE---eccCCCCCcHHHHHHHHHHHHHcCCCEEE
Q psy2386          76 N--LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH---RIGIDDINSYDFVRDFVGTVSSAGCRTFI  150 (311)
Q Consensus        76 d--iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi---R~g~~~~~~~~~~~e~~~~l~~~G~~~it  150 (311)
                      |  +|+||     .+.       .+++.+.+.+++++++++ |+.+|+   +.+|+++    +..++++.++++|+|+| 
T Consensus        88 d~viN~g~-----~~~-------~~~~~~~~~i~~v~~a~~-pv~vKvi~e~~~l~~~----~~~~~a~~a~eaGad~I-  149 (225)
T 1mzh_A           88 DIVWNLSA-----FKS-------EKYDFVVEELKEIFRETP-SAVHKVIVETPYLNEE----EIKKAVEICIEAGADFI-  149 (225)
T ss_dssp             EEECCHHH-----HHT-------TCHHHHHHHHHHHHHTCT-TSEEEEECCGGGCCHH----HHHHHHHHHHHHTCSEE-
T ss_pred             EEEecHHH-----Hhc-------CChHHHHHHHHHHHHHhc-CceEEEEEeCCCCCHH----HHHHHHHHHHHhCCCEE-
Confidence            9  89999     111       245778888999999888 999999   7777542    46889999999999999 


Q ss_pred             EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         151 VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       151 vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                       +.+|    |+      +.+.++|+.++.+++.+. ++||+++|||+|++|+.++++. ||.|.++++    .++++++.
T Consensus       150 -~tst----g~------~~gga~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~iG~s~~----~~i~~~~~  214 (225)
T 1mzh_A          150 -KTST----GF------APRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIGTSSG----ISIAEEFL  214 (225)
T ss_dssp             -ECCC----SC------SSSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESCH----HHHHHHHH
T ss_pred             -EECC----CC------CCCCCCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHHHHccH----HHHHHHHH
Confidence             3333    21      112368999999998762 6999999999999999999987 997777665    34666554


Q ss_pred             h
Q psy2386         229 L  229 (311)
Q Consensus       229 ~  229 (311)
                      +
T Consensus       215 ~  215 (225)
T 1mzh_A          215 K  215 (225)
T ss_dssp             H
T ss_pred             h
Confidence            3

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.77  E-value=5e-18  Score=161.51  Aligned_cols=227  Identities=13%  Similarity=0.104  Sum_probs=165.4

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEe------
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINL------   77 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Idi------   77 (311)
                      +|.+|++.|+++|. ..++++ +++.++.    +... . .+.|..+||+-..++...+..+.+++.|++.+.|      
T Consensus        90 ~~~~~a~aa~~~G~-~~~vss-~s~~~le----~i~~-~-~~~~~~fQly~~~~~~~~~~i~~a~~aG~~al~vTvd~p~  161 (380)
T 1p4c_A           90 GDLALARAATKAGI-PFVLST-ASNMSIE----DLAR-Q-CDGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAV  161 (380)
T ss_dssp             HHHHHHHHHHHHTC-CEEECT-TCSSCHH----HHHH-H-CCSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSS
T ss_pred             HHHHHHHHHHHcCC-CeecCc-cccCCHH----HHHh-c-cCCCeEEEEEechHHHHHHHHHHHHHcCCCEEEEeecCcc
Confidence            68899999999994 788886 4444442    1111 1 3678999998555666667777788899988764      


Q ss_pred             --------ccCCCcc---ccc--------c--CcccCcc---cC---ChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          78 --------NCGCPSN---RVQ--------N--GFFGAIL---MT---KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        78 --------N~gCP~~---~v~--------~--~~~G~~L---l~---~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                              |+||+.+   +..        +  ...++++   +.   +|++..++++++++.+++||.||.   +.    
T Consensus       162 ~g~r~~d~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~ala~~~~~~~~p~~~~~~i~~i~~~~~~Pv~vkg---v~----  234 (380)
T 1p4c_A          162 NGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAALMSRQMDASFNWEALRWLRDLWPHKLLVKG---LL----  234 (380)
T ss_dssp             CCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHHHTSSCCCTTCCHHHHHHHHHHCCSEEEEEE---EC----
T ss_pred             ccchhHHHhcCCCCccccCHHHhhhhhhhccCcccchHHHHHHHhhcCccccHHHHHHHHHhcCCCEEEEe---cC----
Confidence                    7799644   111        0  1122322   23   788888999999999999999994   21    


Q ss_pred             HHHHHHHHHHHHHcCCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                         ..+.++.+.++|+|.|+|  ||++..          +.++.+|+.+.++++.+ ++|||++|||++.+|+.+++.. 
T Consensus       235 ---t~e~a~~a~~aGad~I~vs~~gg~~~----------d~~~~~~~~l~~v~~~~-~~pVia~GGI~~~~dv~kal~~G  300 (380)
T 1p4c_A          235 ---SAEDADRCIAEGADGVILSNHGGRQL----------DCAISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALG  300 (380)
T ss_dssp             ---CHHHHHHHHHTTCSEEEECCGGGTSC----------TTCCCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTT
T ss_pred             ---cHHHHHHHHHcCCCEEEEcCCCCCcC----------CCCcCHHHHHHHHHHHc-CCeEEEECCCCCHHHHHHHHHhC
Confidence               146789999999999999  666431          12235899999999988 6899999999999999999987 


Q ss_pred             cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHH
Q psy2386         208 IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHML  274 (311)
Q Consensus       208 adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~  274 (311)
                      ||+||+||+++...     ..   .+      .....+.++.+.++++..+. .|. ..+..++++..
T Consensus       301 AdaV~iGr~~l~~~-----~~---~g------~~~v~~~~~~l~~el~~~m~~~G~-~~i~el~~~~l  353 (380)
T 1p4c_A          301 AEAVLLGRATLYGL-----AA---RG------ETGVDEVLTLLKADIDRTLAQIGC-PDITSLSPDYL  353 (380)
T ss_dssp             CSCEEESHHHHHHH-----HH---HH------HHHHHHHHHHHHHHHHHHHHHHTC-CBGGGCCGGGE
T ss_pred             CcHhhehHHHHHHH-----Hh---cC------HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHhccCeE
Confidence            99999999997531     11   11      12356778888888888888 775 56778887753

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.76  E-value=1.6e-18  Score=172.50  Aligned_cols=212  Identities=9%  Similarity=0.069  Sum_probs=151.5

Q ss_pred             HHHHh---CCCcEEEecceeccccc-C--CchhccccCCCCCCeEEEecCCCHHH---------HHHHHHHHHHcCCCEE
Q psy2386          11 FHRQI---TRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPKK---------LAKSAKIIQKWGYDEI   75 (311)
Q Consensus        11 l~~~~---g~~~l~~temv~a~~l~-~--~~~~~l~~~~~~~p~~~Ql~g~~~~~---------~~~aa~~~~~~g~d~I   75 (311)
                      +++.|   |+..+.+.++..+.+.. +  ...+.++.-..+.++-+|++|.-.+.         +.+.|+.+.++|+|.|
T Consensus       285 ~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V  364 (555)
T 1jvn_A          285 LAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKV  364 (555)
T ss_dssp             HHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCCEE
Confidence            45544   76689999988765432 1  11233333233456778888865432         4566777778899999


Q ss_pred             EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE----------------------------------
Q psy2386          76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH----------------------------------  121 (311)
Q Consensus        76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi----------------------------------  121 (311)
                      .||.+| ..+..+-..++.++.+|+++.++.+..-+. .+-|++.+                                  
T Consensus       365 ~igt~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~-~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~  442 (555)
T 1jvn_A          365 SIGTDA-VYAAEKYYELGNRGDGTSPIETISKAYGAQ-AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCT  442 (555)
T ss_dssp             EECHHH-HHHHHHHHHTTSCCCSCSHHHHHHHHHCGG-GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEE
T ss_pred             EECCHH-hhCchhhccccccccCHHHHHHHHHHhCCC-cEEEEEEccccccccccccccccccccccCCCCCcceeEEEE
Confidence            999999 444433344566789999999999987531 12222222                                  


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +.||...... ...++++.+++.|++.|++|++++ .+.++       + .||+.++++++.+ ++|||+||||.|++|+
T Consensus       443 ~~Gw~~~~~~-~~~e~a~~~~~~Ga~~il~t~~~~-dG~~~-------G-~d~~li~~l~~~~-~iPVIasGGi~s~~d~  511 (555)
T 1jvn_A          443 IKGGRESRDL-GVWELTRACEALGAGEILLNCIDK-DGSNS-------G-YDLELIEHVKDAV-KIPVIASSGAGVPEHF  511 (555)
T ss_dssp             ETTTTEEEEE-EHHHHHHHHHHTTCCEEEECCGGG-TTTCS-------C-CCHHHHHHHHHHC-SSCEEECSCCCSHHHH
T ss_pred             EecCccCCCC-CHHHHHHHHHHcCCCEEEEeCCCC-CCCCC-------C-CCHHHHHHHHHhC-CccEEEECCCCCHHHH
Confidence            2356543322 357899999999999999999985 12222       2 4999999999998 8999999999999999


Q ss_pred             HHHHh-h-cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         202 DLHLN-Y-IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       202 ~~~l~-~-adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      .++++ . ||+||+||+++.++|.+.++++.+...+
T Consensus       512 ~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~~g  547 (555)
T 1jvn_A          512 EEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHG  547 (555)
T ss_dssp             HHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTT
T ss_pred             HHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHHCC
Confidence            99998 4 9999999999999999999998765543

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.76  E-value=4.8e-18  Score=158.94  Aligned_cols=227  Identities=11%  Similarity=0.066  Sum_probs=151.0

Q ss_pred             HHHHHHHHHhCCCcEEEecceecccccC-C---chhccccCCCCCCeE-----EEecCCCHHHHHHHHHHHHHcCCCEEE
Q psy2386           6 RHCRMFHRQITRYSWLYTEMFTTQAILG-N---KKHCLDFNAEEHPIA-----FQVGDNEPKKLAKSAKIIQKWGYDEIN   76 (311)
Q Consensus         6 ~~fR~l~~~~g~~~l~~temv~a~~l~~-~---~~~~l~~~~~~~p~~-----~Ql~g~~~~~~~~aa~~~~~~g~d~Id   76 (311)
                      .+|++.|+++| ..++++||.++  +.. .   ..+ +.....+.|++     .|+++.+++.+.++++.+   +++++.
T Consensus        78 ~~la~~a~~~G-~~~~~~~~~~~--le~~~~~~~~q-l~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~---~~~a~~  150 (332)
T 1vcf_A           78 LALAEAAEALG-VGMMLGSGRIL--LERPEALRSFR-VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEML---EADALA  150 (332)
T ss_dssp             HHHHHHHHHHT-CEEEEEECHHH--HHCTTTHHHHC-CTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHH---TCSEEE
T ss_pred             HHHHHHHHHcC-CCEEeCCchhc--ccCCCccceEE-eeccCCCceeecccChhhhhccChHHHHHHHhhc---CCCcee
Confidence            59999999999 58999999886  432 1   122 23334578886     778888999998887653   567665


Q ss_pred             eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecC
Q psy2386          77 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HAR  154 (311)
Q Consensus        77 iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~R  154 (311)
                      +|..++.... .  .|..   +.+.+.++++++++ +++||.||. +++..  +    .+.++.++++|+|+|+|  ||+
T Consensus       151 i~~n~~~~~~-~--~~~~---~~~~~~~~i~~vr~-~~~Pv~vK~-v~~g~--~----~e~a~~~~~~G~d~I~vs~~gg  216 (332)
T 1vcf_A          151 FHVNPLQEAV-Q--RGDT---DFRGLVERLAELLP-LPFPVMVKE-VGHGL--S----REAALALRDLPLAAVDVAGAGG  216 (332)
T ss_dssp             EECCHHHHHH-T--TSCC---CCTTHHHHHHHHCS-CSSCEEEEC-SSSCC--C----HHHHHHHTTSCCSEEECCCBTS
T ss_pred             eccchHHHHh-c--CCCc---cHHHHHHHHHHHHc-CCCCEEEEe-cCCCC--C----HHHHHHHHHcCCCEEEeCCCCC
Confidence            5544332211 1  1111   12236788999999 999999994 23321  1    35688999999999999  766


Q ss_pred             ccc-------cccCCC-CcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         155 NAF-------LKKLNP-KQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       155 t~~-------~~G~~g-~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      +.+       .+...+ ....+.++..++.+.++++.++++|||++|||+|++|+.+++.. ||+||+||+++..+    
T Consensus       217 t~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~----  292 (332)
T 1vcf_A          217 TSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA----  292 (332)
T ss_dssp             CCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH----
T ss_pred             CcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH----
Confidence            421       100000 00022344678999999998756999999999999999999987 99999999876432    


Q ss_pred             HhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHH
Q psy2386         226 NFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSI  269 (311)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~  269 (311)
                            .+ +    .....+.++.+.++++..+. .|. ..+..+
T Consensus       293 ------~~-G----~~gv~~~~~~l~~el~~~m~~~G~-~~i~el  325 (332)
T 1vcf_A          293 ------LE-G----AERVAAWIGDYLEELRTALFAIGA-RNPKEA  325 (332)
T ss_dssp             ------TT-C----HHHHHHHHHHHHHHHHHHHHHHTC-SSGGGG
T ss_pred             ------hc-c----HHHHHHHHHHHHHHHHHHHHHhCC-CCHHHH
Confidence                  01 1    12345677777777777666 553 234443

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.76  E-value=1.2e-17  Score=156.25  Aligned_cols=186  Identities=10%  Similarity=0.115  Sum_probs=144.0

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      |+|+..++..+.+.|..+++.+++++.+.+.....+.-..  .+.|+.+|++..+|+ +.+.++.+.+.|+|+|++|+||
T Consensus        22 g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~--~~~p~gvnl~~~~~~-~~~~~~~a~~~g~d~V~~~~g~   98 (332)
T 2z6i_A           22 WVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSL--TDKPFGVNIMLLSPF-VEDIVDLVIEEGVKVVTTGAGN   98 (332)
T ss_dssp             TTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHH--CCSCEEEEECTTSTT-HHHHHHHHHHTTCSEEEECSSC
T ss_pred             CCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHh--cCCCEEEEecCCCCC-HHHHHHHHHHCCCCEEEECCCC
Confidence            6899999999999886688999998776653100011111  257999999997765 7778888889999999999999


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL  161 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~  161 (311)
                      |.                    ++++.+++. ++||.+|+..           .+.++.+++.|+|+|.++|+.  .+|.
T Consensus        99 p~--------------------~~i~~l~~~-g~~v~~~v~~-----------~~~a~~~~~~GaD~i~v~g~~--~GG~  144 (332)
T 2z6i_A           99 PS--------------------KYMERFHEA-GIIVIPVVPS-----------VALAKRMEKIGADAVIAEGME--AGGH  144 (332)
T ss_dssp             GG--------------------GTHHHHHHT-TCEEEEEESS-----------HHHHHHHHHTTCSCEEEECTT--SSEE
T ss_pred             hH--------------------HHHHHHHHc-CCeEEEEeCC-----------HHHHHHHHHcCCCEEEEECCC--CCCC
Confidence            83                    245566653 8999988721           456888999999999999874  2443


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc--chHHhHhhh
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF--LMSNFDLNY  231 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~--i~~~~~~~~  231 (311)
                      .|      ...+|+.+.++++.+ ++||+++|||.|++++.+++.. ||+|++||+++.+|.  ....+++.+
T Consensus       145 ~g------~~~~~~ll~~i~~~~-~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k~~~  210 (332)
T 2z6i_A          145 IG------KLTTMTLVRQVATAI-SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKI  210 (332)
T ss_dssp             CC------SSCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHHHHH
T ss_pred             CC------CccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccccccHHHHHHH
Confidence            33      135899999999998 8999999999999999999987 999999999999995  344444444

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=99.75  E-value=1.1e-17  Score=160.21  Aligned_cols=168  Identities=11%  Similarity=0.075  Sum_probs=119.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc-CC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG-ID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g-~~  126 (311)
                      ++|++||++++++|||+||||++         +|..|.|+|.||+++.++.+++.||+++||+++ +-||.||+... +.
T Consensus       172 ~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~ENR~Rf~lEVi~aVr~~vg~d~vgvRlS~~~~~  251 (400)
T 4gbu_A          172 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF  251 (400)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred             HHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHHHHHHHHHHHHHHHHHcCCCcEEEEecccccc
Confidence            57999999999999999999986         799999999999999999999999999999998 34888887642 11


Q ss_pred             -------CCCcHHHHHHHHHHHHHcC-----CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         127 -------DINSYDFVRDFVGTVSSAG-----CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       127 -------~~~~~~~~~e~~~~l~~~G-----~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                             +....+...++++.++..+     .+.+.+................+..    .....+++.+ ++|||++|+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ir~~~-~~pvi~~G~  326 (400)
T 4gbu_A          252 NSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEG----GSNDFVYSIW-KGPVIRAGN  326 (400)
T ss_dssp             TTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSSTTSCTTTTCCCS----CCSTHHHHHC-CSCEEEESS
T ss_pred             CCCCccchhhhHHHHHHHHHHHHHhhccCccccceeeecccCCCcccccccchhhh----HHHHHHHHHh-CCCEEEeCC
Confidence                   1112334455666666543     3445443221100000000001111    1123456667 799999999


Q ss_pred             CCCHHHHHHHH-hh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         195 IKTKKEIDLHL-NY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       195 I~s~~da~~~l-~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      |.+.+++.+.+ +. ||.|.+||+++.||.+.+++++.
T Consensus       327 ~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~~G  364 (400)
T 4gbu_A          327 FALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG  364 (400)
T ss_dssp             CTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred             CCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHHcC
Confidence            99877776655 44 99999999999999999999863

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.71  E-value=1.8e-16  Score=149.94  Aligned_cols=236  Identities=11%  Similarity=0.151  Sum_probs=155.3

Q ss_pred             CCCCHH------HHHHHHHhCCCcEEEecceec--ccccCCchhccc-cCCCCCCeEEEec-----C-CCHHHHHHHHHH
Q psy2386           2 NLTDRH------CRMFHRQITRYSWLYTEMFTT--QAILGNKKHCLD-FNAEEHPIAFQVG-----D-NEPKKLAKSAKI   66 (311)
Q Consensus         2 ~~td~~------fR~l~~~~g~~~l~~temv~a--~~l~~~~~~~l~-~~~~~~p~~~Ql~-----g-~~~~~~~~aa~~   66 (311)
                      |.|+.+      +|..|+++| ..+.+.||..+  +.-...+.+.++ ..| +.|++.+++     + .+++.+.++++.
T Consensus        69 Ggt~~~~~in~~la~~a~~~G-~~~~vGs~~~~l~~~~~~~s~~~vr~~ap-~~~~~anlg~~ql~~~~~~~~~~~av~~  146 (368)
T 3vkj_A           69 GGRNELGRINKIIAEVAEKFG-IPMGVGSQRVAIEKAEARESFAIVRKVAP-TIPIIANLGMPQLVKGYGLKEFQDAIQM  146 (368)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHT-CCEECCCCHHHHHCGGGSHHHHHHHHHCS-SSCEEEEEEGGGGGTTCCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHhC-CCeeeecchhccCCHHHHhhHHHHHHhCc-CcceecCcCeeecCCCCCHHHHHHHHHH
Confidence            667777      499999999 48999999765  332211222222 233 557765444     4 789999998887


Q ss_pred             HHHcCCCEEEeccCCCccccccCcccCcccCChH-HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC
Q psy2386          67 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL-LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG  145 (311)
Q Consensus        67 ~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~-~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G  145 (311)
                      + ++|+..|+||   |...+... .|.   .+.. ...++++++++.+++||.||. +||...      .+.++.++++|
T Consensus       147 ~-~a~al~Ihln---~~~~~~~p-~g~---~~~~~~~~~~i~~i~~~~~vPVivK~-vG~g~s------~~~A~~l~~aG  211 (368)
T 3vkj_A          147 I-EADAIAVHLN---PAQEVFQP-EGE---PEYQIYALEKLRDISKELSVPIIVKE-SGNGIS------METAKLLYSYG  211 (368)
T ss_dssp             T-TCSEEEEECC---HHHHHHSS-SCC---CBCBTHHHHHHHHHHTTCSSCEEEEC-SSSCCC------HHHHHHHHHTT
T ss_pred             h-cCCCeEEEec---chhhhhCC-CCC---chhhHHHHHHHHHHHHHcCCCEEEEe-CCCCCC------HHHHHHHHhCC
Confidence            7 5677778888   33333221 111   1222 367888999999999999997 666542      46789999999


Q ss_pred             CCEEEE--ecCcccc-----cc----------CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         146 CRTFIV--HARNAFL-----KK----------LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       146 ~~~itv--h~Rt~~~-----~G----------~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      +|+|+|  ||+|.+.     ..          +.+...  -+......+.++++.++++|||++|||+|+.|+.+++.. 
T Consensus       212 ad~I~V~g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~--~g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lG  289 (368)
T 3vkj_A          212 IKNFDTSGQGGTNWIAIEMIRDIRRGNWKAESAKNFLD--WGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALG  289 (368)
T ss_dssp             CCEEECCCBTSBCHHHHHHHHHHHTTCTHHHHHHHTTT--CSCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCCcccchhhhhcccccccchhhcccccc--ccccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcC
Confidence            999999  5554211     00          000000  011123567888888866999999999999999999987 


Q ss_pred             cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHh
Q psy2386         208 IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRH  272 (311)
Q Consensus       208 adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~  272 (311)
                      ||+||+||+++.     ...    .+      +....+.++.+.+.++..+. .|. ..+..+++.
T Consensus       290 A~~v~ig~~~l~-----~~~----~G------~~~v~~~l~~l~~eL~~~m~~~G~-~~i~el~~~  339 (368)
T 3vkj_A          290 ADIAGMALPVLK-----SAI----EG------KESLEQFFRKIIFELKAAMMLTGS-KDVDALKKT  339 (368)
T ss_dssp             CSEEEECHHHHH-----HHH----HC------HHHHHHHHHHHHHHHHHHHHHTTC-CBHHHHHTC
T ss_pred             CCEEEEcHHHHH-----HHh----cC------hHHHHHHHHHHHHHHHHHHHHhCC-CCHHHhccC
Confidence            999999996543     221    11      12234567777777777776 664 456666653

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.9e-17  Score=149.74  Aligned_cols=157  Identities=14%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC-----hHHHHHHHHHHh-ccccceeEE
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK-----PLLVSDCIKAMR-DSVEIDITV  119 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~-----~~~~~~iv~~v~-~~~~~pvsv  119 (311)
                      .++-+|++|.-.. . ++.+++  +|+|.|-              .|+++++|     |+++.++++++. +.+-+++.+
T Consensus        75 ~~~pv~vgGGir~-~-~~~~~l--~Ga~~Vi--------------igs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~  136 (260)
T 2agk_A           75 SPQFLQVGGGIND-T-NCLEWL--KWASKVI--------------VTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSC  136 (260)
T ss_dssp             STTTSEEESSCCT-T-THHHHT--TTCSCEE--------------ECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEE
T ss_pred             CCceEEEeCCCCH-H-HHHHHh--cCCCEEE--------------ECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEe
Confidence            3456778887763 4 666666  8999775              46888999     999999999997 544445555


Q ss_pred             EEe---------ccCCCCCcHHHHH-HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC---C
Q psy2386         120 KHR---------IGIDDINSYDFVR-DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP---E  186 (311)
Q Consensus       120 KiR---------~g~~~~~~~~~~~-e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~---~  186 (311)
                      |++         .||...... ++. ++++.+++. ++.|++|++++ .+.++       + .||+.++++++.+|   +
T Consensus       137 k~~~~~g~~V~~~gw~~~t~~-~~~~e~a~~~~~~-a~~il~t~i~~-dG~~~-------G-~d~eli~~l~~~~~~~~~  205 (260)
T 2agk_A          137 RKTQDGRWIVAMNKWQTLTDL-ELNADTFRELRKY-TNEFLIHAADV-EGLCG-------G-IDELLVSKLFEWTKDYDD  205 (260)
T ss_dssp             EEEETTEEEEEETTTTEEEEE-EESHHHHHHHTTT-CSEEEEEC--------C-------C-CCHHHHHHHHHHHTTCSS
T ss_pred             eecCCCceEEEEcCCccccCc-cHHHHHHHHHHHh-cCEEEEEeecc-ccCcC-------C-CCHHHHHHHHHhhcccCC
Confidence            533         256653221 235 899999999 99999999985 22222       2 39999999999874   6


Q ss_pred             CeEEEecCCCCHHHHHHHHh---hcCEEEEehhh--hhCC-cchHHhHhhh
Q psy2386         187 LEIIINGGIKTKKEIDLHLN---YIDGVMLGREA--YKNP-FLMSNFDLNY  231 (311)
Q Consensus       187 ipvi~nGgI~s~~da~~~l~---~adgVmigRa~--l~~P-~i~~~~~~~~  231 (311)
                      +|||+||||.|++|+.++++   .||+||+||++  +.+| |.|.++.+.+
T Consensus       206 iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~~  256 (260)
T 2agk_A          206 LKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWN  256 (260)
T ss_dssp             CEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHHH
Confidence            99999999999999999995   49999999997  9999 9999987653

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.69  E-value=3.5e-16  Score=139.53  Aligned_cols=156  Identities=16%  Similarity=0.309  Sum_probs=124.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc----cce----
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV----EID----  116 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~----~~p----  116 (311)
                      +.|+++-.+=.+|++.    +.+.++|+|.|-+              |+.++.+|+.+.++++.+...+    +.+    
T Consensus        74 ~ipv~v~ggi~~~~~~----~~~l~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~  135 (244)
T 2y88_A           74 DVQVELSGGIRDDESL----AAALATGCARVNV--------------GTAALENPQWCARVIGEHGDQVAVGLDVQIIDG  135 (244)
T ss_dssp             SSEEEEESSCCSHHHH----HHHHHTTCSEEEE--------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             CCcEEEECCCCCHHHH----HHHHHcCCCEEEE--------------CchHhhChHHHHHHHHHcCCCEEEEEeccccCC
Confidence            5788887777888863    3444579999977              4566789999999999876432    333    


Q ss_pred             -eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         117 -ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       117 -vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                       .+||+| ||.+...  ...++++.+++.|++.|.+|+|+. .+.+       .+ .+|+.++++++.+ ++||+++|||
T Consensus       136 ~~~v~~~-g~~~~~~--~~~e~~~~~~~~G~~~i~~~~~~~-~~~~-------~g-~~~~~~~~l~~~~-~ipvia~GGI  202 (244)
T 2y88_A          136 EHRLRGR-GWETDGG--DLWDVLERLDSEGCSRFVVTDITK-DGTL-------GG-PNLDLLAGVADRT-DAPVIASGGV  202 (244)
T ss_dssp             EEEEEEG-GGTEEEE--EHHHHHHHHHHTTCCCEEEEETTT-TTTT-------SC-CCHHHHHHHHTTC-SSCEEEESCC
T ss_pred             CCEEEEC-CccCCCC--CHHHHHHHHHhCCCCEEEEEecCC-cccc-------CC-CCHHHHHHHHHhC-CCCEEEECCC
Confidence             368888 8875432  357899999999999999999975 1111       12 4899999999987 8999999999


Q ss_pred             CCHHHHHHHHh----hcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         196 KTKKEIDLHLN----YIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       196 ~s~~da~~~l~----~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .+++|+.++++    .||+||+||+++.+||.+.++.+.+
T Consensus       203 ~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~~~~  242 (244)
T 2y88_A          203 SSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALAAV  242 (244)
T ss_dssp             CSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHT
T ss_pred             CCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHHHHh
Confidence            99999999995    5999999999999999999987653

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=99.68  E-value=1.9e-16  Score=145.41  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=112.4

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC-------------
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD-------------  127 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~-------------  127 (311)
                      ++.|+.+++.|+++|...  ||+|+..+...|+++|++|+.+.+|.+    ++++||+.|.|+||.+             
T Consensus        27 ~e~A~~ae~aGA~aI~~l--~~v~~d~~~~~G~arm~~p~~i~~I~~----av~iPV~~K~rig~~~e~qilea~GaD~I  100 (330)
T 2yzr_A           27 VEQAQIAEEAGAVAVMAL--ERVPADIRAAGGVARMSDPALIEEIMD----AVSIPVMAKCRIGHTTEALVLEAIGVDMI  100 (330)
T ss_dssp             HHHHHHHHHHTCSEEEEC--SSCHHHHC--CCCCCCCCHHHHHHHHH----HCSSCEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHcCCCEEEec--CCccccccCCcchhhcCCHHHHHHHHH----hcCCCeEEEEeecchHHHHHHHHcCCCEE
Confidence            557888889999999443  399999999999999999999888864    5789999999999831             


Q ss_pred             ---------C--Cc-------------HHHHHHHHHHHHHcCCCEEEEec--------------Cc------------c-
Q psy2386         128 ---------I--NS-------------YDFVRDFVGTVSSAGCRTFIVHA--------------RN------------A-  156 (311)
Q Consensus       128 ---------~--~~-------------~~~~~e~~~~l~~~G~~~itvh~--------------Rt------------~-  156 (311)
                               +  ..             ..++-|.++++ +.|+++|+.||              ||            . 
T Consensus       101 d~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~-~~Ga~~i~t~ge~g~~~~ve~v~H~r~~~~~~~~~s~~~~~  179 (330)
T 2yzr_A          101 DESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRI-WEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDE  179 (330)
T ss_dssp             EEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHH-HHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             ehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHH-hcCcceeeccCCCCcccchhHHHHHHHHHHHHHHhccCCHH
Confidence                     0  00             01256777877 99999999999              55            0 


Q ss_pred             -ccc-----c--C----------CCCcCC--CCCc------------CcHHHHHHHHHhCCCCeE--EEecCCCCHHHHH
Q psy2386         157 -FLK-----K--L----------NPKQNR--KIPI------------LKYNFVYNLKKDFPELEI--IINGGIKTKKEID  202 (311)
Q Consensus       157 -~~~-----G--~----------~g~~~~--~~~~------------~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~  202 (311)
                       .+.     |  |          .|-.++  ..++            ..++.++++++.. ++||  |++|||.|++|+.
T Consensus       180 El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~-~IPVV~VAeGGI~Tpeda~  258 (330)
T 2yzr_A          180 EVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLG-RLPVVNFAAGGVATPADAA  258 (330)
T ss_dssp             HHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHT-SCSSEEEECSCCCSHHHHH
T ss_pred             HHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhC-CCCeEEEEECCCCCHHHHH
Confidence             000     0  1          110000  0111            1238899999987 7998  6999999999999


Q ss_pred             HHHhh-cCEEEEehhhh--hCCc
Q psy2386         203 LHLNY-IDGVMLGREAY--KNPF  222 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l--~~P~  222 (311)
                      ++++. ||||+|||+++  .||.
T Consensus       259 ~~l~~GaDgV~VGsaI~~a~dP~  281 (330)
T 2yzr_A          259 LMMQLGSDGVFVGSGIFKSENPL  281 (330)
T ss_dssp             HHHHTTCSCEEESHHHHTSSCHH
T ss_pred             HHHHcCcCEEeeHHHHhcCCCHH
Confidence            99987 99999999999  5554

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.62  E-value=1e-14  Score=135.96  Aligned_cols=186  Identities=9%  Similarity=0.116  Sum_probs=139.5

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      |+|+..++..+.+.|..++..+.+++.+.+...-.+.-+  ..+.|+.++++..+|+ +.+.++.+.+.|+|.|.+|+||
T Consensus        36 gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~--~~~~p~gVnl~~~~~~-~~~~~~~~~~~g~d~V~l~~g~  112 (326)
T 3bo9_A           36 WAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQ--KTDKPFGVNIILVSPW-ADDLVKVCIEEKVPVVTFGAGN  112 (326)
T ss_dssp             TTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHT--TCSSCEEEEEETTSTT-HHHHHHHHHHTTCSEEEEESSC
T ss_pred             CCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHH--hcCCCEEEEEeccCCC-HHHHHHHHHHCCCCEEEECCCC
Confidence            789999999999998667888888776655310011111  1257999999986664 4556677778899999999999


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccC
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL  161 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~  161 (311)
                      |.                    ++++.+++ .+++|.+++..           .+.++.+++.|+|+|.++++.  ..|.
T Consensus       113 p~--------------------~~~~~l~~-~g~~v~~~v~s-----------~~~a~~a~~~GaD~i~v~g~~--~GG~  158 (326)
T 3bo9_A          113 PT--------------------KYIRELKE-NGTKVIPVVAS-----------DSLARMVERAGADAVIAEGME--SGGH  158 (326)
T ss_dssp             CH--------------------HHHHHHHH-TTCEEEEEESS-----------HHHHHHHHHTTCSCEEEECTT--SSEE
T ss_pred             cH--------------------HHHHHHHH-cCCcEEEEcCC-----------HHHHHHHHHcCCCEEEEECCC--CCcc
Confidence            83                    12344554 37888887631           456788899999999999876  3454


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc--hHHhHhhh
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL--MSNFDLNY  231 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i--~~~~~~~~  231 (311)
                      +|.      ..+|+.+.++++.+ ++||+++|||.|++|+.+++.. ||+|++||+++..+..  -..+++.+
T Consensus       159 ~G~------~~~~~ll~~i~~~~-~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~~~  224 (326)
T 3bo9_A          159 IGE------VTTFVLVNKVSRSV-NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKI  224 (326)
T ss_dssp             CCS------SCHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCHHHHHHH
T ss_pred             CCC------ccHHHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccccHHHHHHH
Confidence            442      35899999999988 8999999999999999999987 9999999999988763  33444444

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=99.62  E-value=3.3e-15  Score=133.64  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=110.8

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      -+|..+  .++    +.|++++++|+..|....+||.... +. .|.+-|.+|+.+.+    +++++++||..|.|+|. 
T Consensus        13 ~vimdv--~~~----eqa~iae~aGa~av~~l~~~p~d~r-~~-gGv~Rm~dp~~I~~----I~~aVsIPVm~k~righ-   79 (291)
T 3o07_A           13 GVIMDV--VTP----EQAKIAEKSGACAVMALESIPADMR-KS-GKVCRMSDPKMIKD----IMNSVSIPVMAKVRIGH-   79 (291)
T ss_dssp             CEEEEE--SSH----HHHHHHHHHTCSEEEECSSCHHHHH-TT-TCCCCCCCHHHHHH----HHTTCSSCEEEEEETTC-
T ss_pred             Ceeeec--CCH----HHHHHHHHhCchhhhhccCCCchhh-hc-CCccccCCHHHHHH----HHHhCCCCeEEEEecCc-
Confidence            356665  233    3578888999999999999999865 33 37889999988655    56778999999999974 


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEec------------------------Cc-----------------c---------
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHA------------------------RN-----------------A---------  156 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~------------------------Rt-----------------~---------  156 (311)
                              ..-++.|++.|+|+|--+-                        |+                 .         
T Consensus        80 --------~~EAqilea~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~  151 (291)
T 3o07_A           80 --------FVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVS  151 (291)
T ss_dssp             --------HHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTH
T ss_pred             --------HHHHHHHHHcCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHH
Confidence                    1236677777887774211                        00                 0         


Q ss_pred             --------------ccccC-CCCcC--C-CCCcCcHHHHHHHHHhCCCCeE--EEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         157 --------------FLKKL-NPKQN--R-KIPILKYNFVYNLKKDFPELEI--IINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       157 --------------~~~G~-~g~~~--~-~~~~~~~~~i~~i~~~~~~ipv--i~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                                    .+.|| +..+-  . ..-.++|++++++++.. ++||  |+||||.|++|+.++++. ||||||||
T Consensus       152 ~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~-~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGr  230 (291)
T 3o07_A          152 EAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG-KLPVVNFAAGGVATPADAALLMQLGCDGVFVGS  230 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT-SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECG
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHHHHHHHHcc-CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEch
Confidence                          01223 11000  0 01247899999999986 8998  579999999999999976 99999999


Q ss_pred             hhhhCCc
Q psy2386         216 EAYKNPF  222 (311)
Q Consensus       216 a~l~~P~  222 (311)
                      |++..+.
T Consensus       231 AI~~s~D  237 (291)
T 3o07_A          231 GIFKSSN  237 (291)
T ss_dssp             GGGGSSC
T ss_pred             HHhCCCC
Confidence            9987443

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.62  E-value=1.6e-14  Score=136.78  Aligned_cols=184  Identities=13%  Similarity=0.138  Sum_probs=138.1

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceeccccc-C--CchhccccCCCCCCeEEEecCCCHH--------------------
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-G--NKKHCLDFNAEEHPIAFQVGDNEPK--------------------   58 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~--~~~~~l~~~~~~~p~~~Ql~g~~~~--------------------   58 (311)
                      |+|+..++..+.+.|..++..++|++.+.+. .  .....+     +.|+.|||+...+.                    
T Consensus        21 gvs~~~la~av~~aGglG~i~~~~~s~~~l~~~i~~~~~~~-----~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~   95 (369)
T 3bw2_A           21 GVSVPQLAAAVCEAGGLGFLAAGYKTADGMYQEIKRLRGLT-----GRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAW   95 (369)
T ss_dssp             TTSCHHHHHHHHHTTSBEEEECTTSCHHHHHHHHHHHHHHC-----CSCEEEEEECCCCCC---CHHHHHHHHTHHHHHH
T ss_pred             CCCcHHHHHHHHHCCCEEEcCCCCCCHHHHHHHHHHHHHhC-----CCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHH
Confidence            4899999999999996688889999888774 1  111222     36899999986542                    


Q ss_pred             --------------HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          59 --------------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        59 --------------~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                                    .+.+.++.+.+.|+|.|.+++|||..                   ++++.+++ .+++|.+++.. 
T Consensus        96 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~-------------------~~i~~~~~-~g~~v~~~v~t-  154 (369)
T 3bw2_A           96 YETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDR-------------------EVIARLRR-AGTLTLVTATT-  154 (369)
T ss_dssp             TTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCH-------------------HHHHHHHH-TTCEEEEEESS-
T ss_pred             cCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcH-------------------HHHHHHHH-CCCeEEEECCC-
Confidence                          14556677888999999999999842                   34555555 37888887631 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC-----cCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP-----ILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~-----~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                                .+.++.+++.|+|+|.++++.  .+|+.|.......     ...|+.+.++++.+ ++||++.|||.+++
T Consensus       155 ----------~~~a~~a~~~GaD~i~v~g~~--~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~-~iPViaaGGI~~~~  221 (369)
T 3bw2_A          155 ----------PEEARAVEAAGADAVIAQGVE--AGGHQGTHRDSSEDDGAGIGLLSLLAQVREAV-DIPVVAAGGIMRGG  221 (369)
T ss_dssp             ----------HHHHHHHHHTTCSEEEEECTT--CSEECCCSSCCGGGTTCCCCHHHHHHHHHHHC-SSCEEEESSCCSHH
T ss_pred             ----------HHHHHHHHHcCCCEEEEeCCC--cCCcCCCcccccccccccccHHHHHHHHHHhc-CceEEEECCCCCHH
Confidence                      345788899999999998875  2444332111111     12399999999988 89999999999999


Q ss_pred             HHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         200 EIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      ++.++++. ||+|++||+++.+|+..
T Consensus       222 ~~~~~l~~GAd~V~vGs~~~~~~e~~  247 (369)
T 3bw2_A          222 QIAAVLAAGADAAQLGTAFLATDESG  247 (369)
T ss_dssp             HHHHHHHTTCSEEEESHHHHTSTTCC
T ss_pred             HHHHHHHcCCCEEEEChHHhCCcccC
Confidence            99999987 99999999999999763

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.61  E-value=9.5e-15  Score=137.77  Aligned_cols=234  Identities=12%  Similarity=0.069  Sum_probs=138.8

Q ss_pred             HHHHHHHHHhCCCcEEEecceecccccC-CchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcc
Q psy2386           6 RHCRMFHRQITRYSWLYTEMFTTQAILG-NKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN   84 (311)
Q Consensus         6 ~~fR~l~~~~g~~~l~~temv~a~~l~~-~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~   84 (311)
                      ..|++.|+++|- .+...||..+-.-.. .+....+.. ++.|++.+|....+.+  ++.+.++..|+|.+.||+-..+.
T Consensus       106 ~~lA~~a~~~G~-~~~vGs~~~~le~~~~~~~~v~r~~-P~~~~ianig~~~~~e--~~~~~ve~~~adal~ihln~~qe  181 (365)
T 3sr7_A          106 EKLAQVADTCGL-LFVTGSYSTALKNPDDTSYQVKKSR-PHLLLATNIGLDKPYQ--AGLQAVRDLQPLFLQVHINLMQE  181 (365)
T ss_dssp             HHHHHHHHHHTC-CEEC------------------------CCEEEEEETTSCHH--HHHHHHHHHCCSCEEEEECHHHH
T ss_pred             HHHHHHHHHcCC-CeecccccccccCccccceEehhhC-CCCcEEEEeCCCCCHH--HHHHHHHhcCCCEEEEecccccc
Confidence            349999999994 688888875211001 111223323 4789999998755432  55666677789988888665443


Q ss_pred             ccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--ccc--c
Q psy2386          85 RVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--FLK--K  160 (311)
Q Consensus        85 ~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--~~~--G  160 (311)
                      .+...|     -.+.+...+.++++++.+++||.||. +|+...      .+.++.+.++|+|+|+|+++..  +.+  .
T Consensus       182 ~~~p~G-----d~~~~~~~~~I~~l~~~~~~PVivK~-vg~g~s------~e~A~~l~~aGad~I~V~g~GGt~~a~ie~  249 (365)
T 3sr7_A          182 LLMPEG-----EREFRSWKKHLSDYAKKLQLPFILKE-VGFGMD------VKTIQTAIDLGVKTVDISGRGGTSFAYIEN  249 (365)
T ss_dssp             HTSSSS-----CCCCHHHHHHHHHHHHHCCSCEEEEE-CSSCCC------HHHHHHHHHHTCCEEECCCBC---------
T ss_pred             ccCCCC-----CCcHHHHHHHHHHHHHhhCCCEEEEE-CCCCCC------HHHHHHHHHcCCCEEEEeCCCCcccchhhc
Confidence            332221     13344567889999999999999994 565431      4678999999999999976532  100  0


Q ss_pred             CCCCc---CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCC
Q psy2386         161 LNPKQ---NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLP  236 (311)
Q Consensus       161 ~~g~~---~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~  236 (311)
                      +.+..   ....+....+.+.+++...+++|||++|||+|+.|+.+++.. ||+||+||+++.     ....    . + 
T Consensus       250 ~r~~~~~~~~~~g~pt~~~L~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~-----a~~~----~-G-  318 (365)
T 3sr7_A          250 RRGGNRSYLNQWGQTTAQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTMLE-----LVEQ----H-S-  318 (365)
T ss_dssp             -----CGGGTTCSCBHHHHHHHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHH-----HHHH----S-C-
T ss_pred             cccccccccccccccHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHHh----c-C-
Confidence            00000   000111233566666554446999999999999999999987 999999996643     2211    1 1 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHH
Q psy2386         237 QYKIPTRIDIINRMILYIRQQLN-NNKIKNINSIT  270 (311)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~  270 (311)
                         +....+.++.+.++++..+. .|. ..+..++
T Consensus       319 ---~~~v~~~l~~l~~eL~~~m~~~G~-~si~eL~  349 (365)
T 3sr7_A          319 ---VHEVIAIVNGWKEDLRLIMCALNC-QTIAELR  349 (365)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHTTC-SSTGGGG
T ss_pred             ---hHHHHHHHHHHHHHHHHHHHHhCC-cCHHHhc
Confidence               12234667777777777776 664 3344443

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=99.61  E-value=6.5e-15  Score=137.92  Aligned_cols=201  Identities=9%  Similarity=0.134  Sum_probs=147.8

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcc-------------------cCc---ccC
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFF-------------------GAI---LMT   97 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~-------------------G~~---Ll~   97 (311)
                      +.|.-.||. -.|.+...+-.++++++||..|=+..=.|..-.+    +.++                   ++.   -.-
T Consensus       121 ~~~~wfQlY~~~d~~~~~~l~~ra~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  200 (352)
T 3sgz_A          121 EGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFP  200 (352)
T ss_dssp             TCEEEEECCCCSCHHHHHHHHHHHHHTTCCCEEEECSCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CC
T ss_pred             CccceeccccCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhcc
Confidence            568899986 3477888888899999999998888766653111    0000                   111   234


Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      ||.+.-+.++++++.+++||.||....          .+.++.++++|+|+|+++++... +       ....+..++.+
T Consensus       201 d~~~~w~~i~~lr~~~~~PvivK~v~~----------~e~A~~a~~~GaD~I~vsn~GG~-~-------~d~~~~~~~~L  262 (352)
T 3sgz_A          201 KASFCWNDLSLLQSITRLPIILKGILT----------KEDAELAMKHNVQGIVVSNHGGR-Q-------LDEVSASIDAL  262 (352)
T ss_dssp             CTTCCHHHHHHHHHHCCSCEEEEEECS----------HHHHHHHHHTTCSEEEECCGGGT-S-------SCSSCCHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCEEEEecCc----------HHHHHHHHHcCCCEEEEeCCCCC-c-------cCCCccHHHHH
Confidence            677778899999999999999998731          46789999999999999654321 1       11235689999


Q ss_pred             HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHHH
Q psy2386         178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYIR  255 (311)
Q Consensus       178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                      .++++.+. ++|||++|||+|.+|+.+++.. ||+|||||+++..+.     ..   +      +....+.++.+.++++
T Consensus       263 ~~i~~av~~~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~-----~~---G------~~gv~~~l~~l~~el~  328 (352)
T 3sgz_A          263 REVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLA-----CK---G------EDGVKEVLDILTAELH  328 (352)
T ss_dssp             HHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHH-----HH---H------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHH-----hc---C------cHHHHHHHHHHHHHHH
Confidence            99988763 5999999999999999999987 999999998653322     11   1      1234567888888888


Q ss_pred             HHHh-cCCcccHHHHHHhHHHHhc
Q psy2386         256 QQLN-NNKIKNINSITRHMLGLMK  278 (311)
Q Consensus       256 ~~~~-~g~~~~~~~~~k~~~~~~~  278 (311)
                      ..+. .|. ..+..+++++.||.|
T Consensus       329 ~~m~~~G~-~~i~el~~~~~~y~k  351 (352)
T 3sgz_A          329 RCMTLSGC-QSVAEISPDLIQFSR  351 (352)
T ss_dssp             HHHHHHTC-SBGGGCCGGGBSSCC
T ss_pred             HHHHHhCC-CcHHHHhhhcchhcc
Confidence            8777 775 468889999998865

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.61  E-value=1.7e-14  Score=128.75  Aligned_cols=157  Identities=15%  Similarity=0.275  Sum_probs=119.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE----
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK----  120 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK----  120 (311)
                      +.|+++-.+=.+|++.    +.+.++|+|.|-+              |+.++.+|+.+.++++.....+.+.++++    
T Consensus        75 ~ipv~v~ggI~~~~~~----~~~l~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v  136 (244)
T 1vzw_A           75 DIKVELSGGIRDDDTL----AAALATGCTRVNL--------------GTAALETPEWVAKVIAEHGDKIAVGLDVRGTTL  136 (244)
T ss_dssp             SSEEEEESSCCSHHHH----HHHHHTTCSEEEE--------------CHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEE
T ss_pred             CCcEEEECCcCCHHHH----HHHHHcCCCEEEE--------------CchHhhCHHHHHHHHHHcCCcEEEEEEccCCEE
Confidence            5788887666888863    3444579999876              45677889999999988764443444433    


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      .+.||.+...  ...++++.+++.|++.|.+|++++. +.+       . ..+|+.++++++.+ ++||+++|||.+++|
T Consensus       137 ~~~g~~~~~~--~~~e~~~~~~~~G~~~i~~~~~~~~-~~~-------~-g~~~~~~~~i~~~~-~ipvia~GGI~~~~d  204 (244)
T 1vzw_A          137 RGRGWTRDGG--DLYETLDRLNKEGCARYVVTDIAKD-GTL-------Q-GPNLELLKNVCAAT-DRPVVASGGVSSLDD  204 (244)
T ss_dssp             CCSSSCCCCC--BHHHHHHHHHHTTCCCEEEEEC----------------CCCHHHHHHHHHTC-SSCEEEESCCCSHHH
T ss_pred             EEcCcccCCC--CHHHHHHHHHhCCCCEEEEeccCcc-ccc-------C-CCCHHHHHHHHHhc-CCCEEEECCCCCHHH
Confidence            1357776443  3578899999999999999988641 111       1 14899999999987 899999999999999


Q ss_pred             HHHHHh----hcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         201 IDLHLN----YIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       201 a~~~l~----~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      +.++++    .||+||+||+++.+||.+.++.+.+
T Consensus       205 ~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~  239 (244)
T 1vzw_A          205 LRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT  239 (244)
T ss_dssp             HHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred             HHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence            999995    4999999999999999999887654

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.60  E-value=2.1e-14  Score=133.86  Aligned_cols=179  Identities=11%  Similarity=0.109  Sum_probs=135.0

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEeccee-cccccCCchhccccCCCCCCeEEEecCC----CHHHHHHHHHHHHHcCCCEEE
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFT-TQAILGNKKHCLDFNAEEHPIAFQVGDN----EPKKLAKSAKIIQKWGYDEIN   76 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~-a~~l~~~~~~~l~~~~~~~p~~~Ql~g~----~~~~~~~aa~~~~~~g~d~Id   76 (311)
                      |+|+..++..+.+.|..++..+++.+ .+.+...-.+.-+.  .+.|+.++++.+    +++ +.+.++.+.+.|+|.|.
T Consensus        25 gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~--~~~p~~v~l~v~~~~~~~~-~~~~~~~~~~~g~d~V~  101 (328)
T 2gjl_A           25 WVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCREL--TDRPFGVNLTLLPTQKPVP-YAEYRAAIIEAGIRVVE  101 (328)
T ss_dssp             TTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHH--CSSCCEEEEEECCCSSCCC-HHHHHHHHHHTTCCEEE
T ss_pred             CCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEEeccccccCcc-HHHHHHHHHhcCCCEEE
Confidence            78999999999999866788887765 44432100011111  247899999987    333 66677788889999999


Q ss_pred             eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386          77 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus        77 iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                      +|+|||.                    ++++.+++. ++|+.+++..           .+.++.+.+.|+|+|.+++++.
T Consensus       102 ~~~g~p~--------------------~~~~~l~~~-gi~vi~~v~t-----------~~~a~~~~~~GaD~i~v~g~~~  149 (328)
T 2gjl_A          102 TAGNDPG--------------------EHIAEFRRH-GVKVIHKCTA-----------VRHALKAERLGVDAVSIDGFEC  149 (328)
T ss_dssp             EEESCCH--------------------HHHHHHHHT-TCEEEEEESS-----------HHHHHHHHHTTCSEEEEECTTC
T ss_pred             EcCCCcH--------------------HHHHHHHHc-CCCEEeeCCC-----------HHHHHHHHHcCCCEEEEECCCC
Confidence            9998871                    345556654 7888876531           3557788999999999998763


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                        .|..|..    ...+|+.+.++++.+ ++||+++|||.+++++.+++.. ||+|++||+++..|.
T Consensus       150 --GG~~G~~----~~~~~~~l~~v~~~~-~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e  209 (328)
T 2gjl_A          150 --AGHPGED----DIPGLVLLPAAANRL-RVPIIASGGFADGRGLVAALALGADAINMGTRFLATRE  209 (328)
T ss_dssp             --SBCCCSS----CCCHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSS
T ss_pred             --CcCCCCc----cccHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCcc
Confidence              3443331    236899999999987 8999999999999999999986 999999999999987

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.58  E-value=1.8e-14  Score=128.46  Aligned_cols=185  Identities=11%  Similarity=0.138  Sum_probs=128.3

Q ss_pred             HHhCCCcEEEecceecccccCCch---hccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386          13 RQITRYSWLYTEMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG   89 (311)
Q Consensus        13 ~~~g~~~l~~temv~a~~l~~~~~---~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~   89 (311)
                      .+.|...+.+|++..+....+...   +.+.  ..+.|+++.=+=+++++..++    .+.|+|+|-+            
T Consensus        40 ~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~--~~~ipvi~~Ggi~~~~~~~~~----~~~Gad~V~l------------  101 (241)
T 1qo2_A           40 IEEGFTLIHVVDLSNAIENSGENLPVLEKLS--EFAEHIQIGGGIRSLDYAEKL----RKLGYRRQIV------------  101 (241)
T ss_dssp             HHTTCCCEEEEEHHHHHHCCCTTHHHHHHGG--GGGGGEEEESSCCSHHHHHHH----HHTTCCEEEE------------
T ss_pred             HHcCCCEEEEecccccccCCchhHHHHHHHH--hcCCcEEEECCCCCHHHHHHH----HHCCCCEEEE------------
Confidence            456766788888655422211111   2222  224565554333556655443    3478998844            


Q ss_pred             cccCcccCChHHHHHHHHHHhcccccee-----EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCC
Q psy2386          90 FFGAILMTKPLLVSDCIKAMRDSVEIDI-----TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPK  164 (311)
Q Consensus        90 ~~G~~Ll~~~~~~~~iv~~v~~~~~~pv-----svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~  164 (311)
                        |+.++.+|+.+.++ +...+.+-+.+     .|++ .||.+.... ...++++.+++.|++.|.+|++++ .+.+.| 
T Consensus       102 --g~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~-~g~~~~~~~-~~~e~~~~~~~~G~~~i~~t~~~~-~g~~~g-  174 (241)
T 1qo2_A          102 --SSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAF-KGWLAEEEI-DPVSLLKRLKEYGLEEIVHTEIEK-DGTLQE-  174 (241)
T ss_dssp             --CHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECC-TTCSSCSCC-CHHHHHHHHHTTTCCEEEEEETTH-HHHTCC-
T ss_pred             --CchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEE-CCceecCCC-CHHHHHHHHHhCCCCEEEEEeecc-cccCCc-
Confidence              67788999999888 77653322223     3444 478754322 256889999999999999999864 111111 


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-------cCEEEEehhhhhCCcchHHhHhh
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-------IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-------adgVmigRa~l~~P~i~~~~~~~  230 (311)
                             .||+.++++++.+ ++|||++|||.|++|+.++++.       |||||+||+++..++-+.++.+.
T Consensus       175 -------~~~~~i~~l~~~~-~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~~  239 (241)
T 1qo2_A          175 -------HDFSLTKKIAIEA-EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRY  239 (241)
T ss_dssp             -------CCHHHHHHHHHHH-TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             -------CCHHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHHH
Confidence                   4899999999988 8999999999999999999964       99999999999999988887764

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.57  E-value=4.1e-14  Score=132.47  Aligned_cols=178  Identities=12%  Similarity=0.093  Sum_probs=127.8

Q ss_pred             CCCCHHHHH-HHHHhCCCcEEEecceecccccCCchhcccc-CCCCCCeEEEecCCCHHHHHHHHHHHHHcC--CCEEEe
Q psy2386           2 NLTDRHCRM-FHRQITRYSWLYTEMFTTQAILGNKKHCLDF-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWG--YDEINL   77 (311)
Q Consensus         2 ~~td~~fR~-l~~~~g~~~l~~temv~a~~l~~~~~~~l~~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g--~d~Idi   77 (311)
                      ++|+..|.. +++..| .++++++|....      ..+++. .+...|+.+|+ |.+++.+.. ++.+.+.|  ++.|++
T Consensus        56 g~s~~~la~a~~~~gg-~g~~~~~~~~~~------~~~i~~~~~~g~~v~v~~-g~~~~~~~~-a~~~~~~g~~~~~i~i  126 (336)
T 1ypf_A           56 TIIDERIATYLAENNY-FYIMHRFQPEKR------ISFIRDMQSRGLIASISV-GVKEDEYEF-VQQLAAEHLTPEYITI  126 (336)
T ss_dssp             TTCCHHHHHHHHHTTC-CCCCCCSSGGGH------HHHHHHHHHTTCCCEEEE-CCSHHHHHH-HHHHHHTTCCCSEEEE
T ss_pred             CCChHHHHHHHHhCCC-EEEecCCCCHHH------HHHHHHHHhcCCeEEEeC-CCCHHHHHH-HHHHHhcCCCCCEEEE
Confidence            578889955 566666 578888775321      112211 12345899996 888887765 55677778  999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecC
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HAR  154 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~R  154 (311)
                      |++.          |     ++....++++++++.++ .||. |-..  .       ..+.++.++++|+|+|++  |++
T Consensus       127 ~~~~----------G-----~~~~~~~~i~~lr~~~~~~~vi-~G~v--~-------s~e~A~~a~~aGad~Ivvs~hgG  181 (336)
T 1ypf_A          127 DIAH----------G-----HSNAVINMIQHIKKHLPESFVI-AGNV--G-------TPEAVRELENAGADATKVGIGPG  181 (336)
T ss_dssp             ECSS----------C-----CSHHHHHHHHHHHHHCTTSEEE-EEEE--C-------SHHHHHHHHHHTCSEEEECSSCS
T ss_pred             ECCC----------C-----CcHHHHHHHHHHHHhCCCCEEE-ECCc--C-------CHHHHHHHHHcCCCEEEEecCCC
Confidence            9742          2     67888899999999885 5554 4211  1       147789999999999999  665


Q ss_pred             ccc---cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         155 NAF---LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       155 t~~---~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +..   ..+..+     .+...++.+.++++.+ ++|||++|||+|++|+.+++.. ||+||+||+++.
T Consensus       182 ~~~~~~~~~~~g-----~~g~~~~~l~~v~~~~-~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~  244 (336)
T 1ypf_A          182 KVCITKIKTGFG-----TGGWQLAALRWCAKAA-SKPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAG  244 (336)
T ss_dssp             TTCHHHHHHSCS-----STTCHHHHHHHHHHTC-SSCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTT
T ss_pred             ceeecccccCcC-----CchhHHHHHHHHHHHc-CCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhc
Confidence            321   111111     1112688999999988 8999999999999999999987 999999999984

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.56  E-value=9.2e-14  Score=124.36  Aligned_cols=161  Identities=10%  Similarity=0.106  Sum_probs=120.6

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-c--cccee---
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-S--VEIDI---  117 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~--~~~pv---  117 (311)
                      .+.|+++.=+=+++++..++.    +.|+|+|-+              |+.++.+|+.+.++.+.... .  +++++   
T Consensus        74 ~~iPvi~~Ggi~~~~~~~~~~----~~Gad~V~l--------------g~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~  135 (252)
T 1ka9_F           74 VFIPLTVGGGVRSLEDARKLL----LSGADKVSV--------------NSAAVRRPELIRELADHFGAQAVVLAIDARWR  135 (252)
T ss_dssp             CCSCEEEESSCCSHHHHHHHH----HHTCSEEEE--------------CHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEE
T ss_pred             CCCCEEEECCcCCHHHHHHHH----HcCCCEEEE--------------ChHHHhCcHHHHHHHHHcCCCcEEEEEEEecC
Confidence            367888765556676554433    468999876              56778899999999888752 2  22222   


Q ss_pred             ----EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         118 ----TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       118 ----svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                          .|++ .||.+.... ...++++.+++.|++.|.+|+++.  .|.      ..+ .||+.++++++.+ ++||+++|
T Consensus       136 ~g~~~v~~-~g~~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~~--~g~------~~g-~~~~~i~~l~~~~-~ipvia~G  203 (252)
T 1ka9_F          136 GDFPEVHV-AGGRVPTGL-HAVEWAVKGVELGAGEILLTSMDR--DGT------KEG-YDLRLTRMVAEAV-GVPVIASG  203 (252)
T ss_dssp             TTEEEEEE-TTTTEEEEE-EHHHHHHHHHHHTCCEEEEEETTT--TTT------CSC-CCHHHHHHHHHHC-SSCEEEES
T ss_pred             CCCEEEEE-CCCccccCC-cHHHHHHHHHHcCCCEEEEecccC--CCC------cCC-CCHHHHHHHHHHc-CCCEEEeC
Confidence                3444 366653211 357889999999999999997653  111      112 4899999999998 89999999


Q ss_pred             CCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         194 GIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       194 gI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                      ||.+++|+.++++. |||||+||+++.+||.+.++.+.+...
T Consensus       204 GI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~~  245 (252)
T 1ka9_F          204 GAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAEK  245 (252)
T ss_dssp             CCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            99999999999976 999999999999999999988776543

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.55  E-value=9.9e-14  Score=124.21  Aligned_cols=192  Identities=11%  Similarity=0.118  Sum_probs=133.5

Q ss_pred             HHHhCCCcEEEecceecccccCCch---hccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccccc
Q psy2386          12 HRQITRYSWLYTEMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN   88 (311)
Q Consensus        12 ~~~~g~~~l~~temv~a~~l~~~~~---~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~   88 (311)
                      +.+.|+..+.++++-....-.....   +.+. ...+.|+++--+=+++++..+    +.++|+|+|-+           
T Consensus        39 ~~~~Gad~i~v~d~~~~~~~~~~~~~~i~~i~-~~~~ipvi~~ggI~~~~~~~~----~~~~Gad~V~l-----------  102 (253)
T 1thf_D           39 YSEIGIDELVFLDITASVEKRKTMLELVEKVA-EQIDIPFTVGGGIHDFETASE----LILRGADKVSI-----------  102 (253)
T ss_dssp             HHHTTCCEEEEEESSCSSSHHHHHHHHHHHHH-TTCCSCEEEESSCCSHHHHHH----HHHTTCSEEEE-----------
T ss_pred             HHHcCCCEEEEECCchhhcCCcccHHHHHHHH-HhCCCCEEEeCCCCCHHHHHH----HHHcCCCEEEE-----------
Confidence            3456765677787653321111001   1121 223578888766678876433    33579999866           


Q ss_pred             CcccCcccCChHHHHHHHHHHhc-ccccee---------EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386          89 GFFGAILMTKPLLVSDCIKAMRD-SVEIDI---------TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL  158 (311)
Q Consensus        89 ~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pv---------svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~  158 (311)
                         |+.++.+|+.+.++++.+.. .+.+.+         .|++ .||.+.... ...++++.+++.|++.|.+|++++ .
T Consensus       103 ---g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~-~g~~~~~~~-~~~e~~~~~~~~G~~~i~~~~~~~-~  176 (253)
T 1thf_D          103 ---NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFT-YSGKKNTGI-LLRDWVVEVEKRGAGEILLTSIDR-D  176 (253)
T ss_dssp             ---SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEE-TTTTEEEEE-EHHHHHHHHHHTTCSEEEEEETTT-T
T ss_pred             ---ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEE-CCCccccCC-CHHHHHHHHHHCCCCEEEEEeccC-C
Confidence               56678899999999888753 222233         3444 366542211 256889999999999999998764 1


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                      +...       + .+|+.++++++.+ ++||+++|||.+++|+.++++. ||+|++||+++.+||.+.++.+.+...
T Consensus       177 g~~~-------g-~~~~~~~~l~~~~-~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~~~  244 (253)
T 1thf_D          177 GTKS-------G-YDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH  244 (253)
T ss_dssp             TSCS-------C-CCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHHT
T ss_pred             CCCC-------C-CCHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHHHc
Confidence            1111       1 4899999999987 8999999999999999999976 999999999999999998887766543

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.53  E-value=1.1e-13  Score=124.84  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=115.2

Q ss_pred             HHHhCCCcEEEecceecccccCCchhccc-c-CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccC
Q psy2386          12 HRQITRYSWLYTEMFTTQAILGNKKHCLD-F-NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG   89 (311)
Q Consensus        12 ~~~~g~~~l~~temv~a~~l~~~~~~~l~-~-~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~   89 (311)
                      +.+.|+..+.+|++..+....+.....++ . ...+.|+++.=+-++++++.++.    +.|+|+|-+.           
T Consensus        39 ~~~~Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~----~~Gad~v~lg-----------  103 (266)
T 2w6r_A           39 VEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAF----LAGADKALAA-----------  103 (266)
T ss_dssp             HHHHTCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHH----HHTCSEEECC-----------
T ss_pred             HHHCCCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH----HcCCcHhhhh-----------
Confidence            45677656777776433211121111111 1 22367888864447777765444    4689988764           


Q ss_pred             cccCccc-C--ChHHHHHHHHHHh---cc--cccee-------EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386          90 FFGAILM-T--KPLLVSDCIKAMR---DS--VEIDI-------TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus        90 ~~G~~Ll-~--~~~~~~~iv~~v~---~~--~~~pv-------svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                         +.++ .  +|+.+.++++...   +.  +++++       .|+++ ||...... ...++++.+++.|++.|.+|++
T Consensus       104 ---~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~-g~~~~~~~-~~~e~~~~~~~~G~~~i~~t~~  178 (266)
T 2w6r_A          104 ---SVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTH-SGKKNTGI-LLRDWVVEVEKRGAGEILLTSI  178 (266)
T ss_dssp             ---CCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEET-TTTEEEEE-EHHHHHHHHHHTTCSEEEEEET
T ss_pred             ---HHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEEC-CCceecch-hHHHHHHHHHHcCCCEEEEEee
Confidence               5555 4  7888888877655   22  22332       45553 66532211 2468899999999999999987


Q ss_pred             ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         155 NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       155 t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      ++ .+.+       . ..||+.++++++.+ ++|||++|||.+++|+.++++. ||||++|++++.+||.+.++.+.+..
T Consensus       179 ~~-~g~~-------~-g~~~~~i~~l~~~~-~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~  248 (266)
T 2w6r_A          179 DR-DGTK-------S-GYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKEYLKK  248 (266)
T ss_dssp             TT-TTTC-------S-CCCHHHHHHHGGGC-CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC---------------
T ss_pred             cC-CCCc-------C-CCCHHHHHHHHHHc-CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHHHHHH
Confidence            63 1111       1 24899999999987 8999999999999999999976 99999999999999999988876543

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.50  E-value=3e-13  Score=120.22  Aligned_cols=193  Identities=9%  Similarity=0.085  Sum_probs=134.5

Q ss_pred             HHHHHhCCCcEEEecceecccccCCch---hccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc
Q psy2386          10 MFHRQITRYSWLYTEMFTTQAILGNKK---HCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV   86 (311)
Q Consensus        10 ~l~~~~g~~~l~~temv~a~~l~~~~~---~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v   86 (311)
                      +.+.+.|...+.+++|.....-.....   +.+. ...+.|+++.-+-.+++++.+    +.++|+|+|.||        
T Consensus        40 ~~~~~~G~d~i~v~~~~~~~~~~~~~~~~i~~i~-~~~~ipvi~~g~i~~~~~~~~----~~~~Gad~V~i~--------  106 (253)
T 1h5y_A           40 VRYEEEGADEIAILDITAAPEGRATFIDSVKRVA-EAVSIPVLVGGGVRSLEDATT----LFRAGADKVSVN--------  106 (253)
T ss_dssp             HHHHHTTCSCEEEEECCCCTTTHHHHHHHHHHHH-HHCSSCEEEESSCCSHHHHHH----HHHHTCSEEEES--------
T ss_pred             HHHHHcCCCEEEEEeCCccccCCcccHHHHHHHH-HhcCCCEEEECCCCCHHHHHH----HHHcCCCEEEEC--------
Confidence            344567765688887754311000001   1111 112578888777788876533    345799999998        


Q ss_pred             ccCcccCcccCChHHHHHHHHHHhc-----cccce-----eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc
Q psy2386          87 QNGFFGAILMTKPLLVSDCIKAMRD-----SVEID-----ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus        87 ~~~~~G~~Ll~~~~~~~~iv~~v~~-----~~~~p-----vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                            ..++.+|+.+.++.+....     .++.+     +.|++|.++.....  ...++++.+.+.|++.|.+|+++.
T Consensus       107 ------~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~--~~~e~~~~~~~~G~d~i~~~~~~~  178 (253)
T 1h5y_A          107 ------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGL--DAVKWAKEVEELGAGEILLTSIDR  178 (253)
T ss_dssp             ------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEE--EHHHHHHHHHHHTCSEEEEEETTT
T ss_pred             ------hHHhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCC--CHHHHHHHHHhCCCCEEEEecccC
Confidence                  2456789988888877542     11222     57888865533221  356889999999999999998864


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                        .|.      .. ..+++.++++++.+ ++||+++|||.+++|+.++++. ||+||+||+++.+++.+.++.+.+..
T Consensus       179 --~g~------~~-~~~~~~i~~l~~~~-~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~  246 (253)
T 1h5y_A          179 --DGT------GL-GYDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE  246 (253)
T ss_dssp             --TTT------CS-CCCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred             --CCC------cC-cCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence              111      01 14899999999987 8999999999999999999976 99999999999999888777766543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=99.44  E-value=1.8e-12  Score=124.11  Aligned_cols=142  Identities=13%  Similarity=0.177  Sum_probs=105.7

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~  125 (311)
                      ++++.+.. +++ ..+.++.+.+.|+|.|+||+++               .+|+.+.++++++++.+ ++||.++.-.  
T Consensus       143 ~~~~~i~~-~~~-~~~~a~~~~~~G~d~i~i~~~~---------------g~~~~~~e~i~~ir~~~~~~pviv~~v~--  203 (404)
T 1eep_A          143 RVGAAVSI-DID-TIERVEELVKAHVDILVIDSAH---------------GHSTRIIELIKKIKTKYPNLDLIAGNIV--  203 (404)
T ss_dssp             CCEEEECS-CTT-HHHHHHHHHHTTCSEEEECCSC---------------CSSHHHHHHHHHHHHHCTTCEEEEEEEC--
T ss_pred             eEEEEeCC-Chh-HHHHHHHHHHCCCCEEEEeCCC---------------CChHHHHHHHHHHHHHCCCCeEEEcCCC--
Confidence            46788865 333 3444566778899999999765               14688899999999988 8999884211  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEE------ecCccccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIV------HARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIK  196 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itv------h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~  196 (311)
                              ..+.++.++++|+|+|++      |.++....+..        ..+++.+..+++   .. ++|||++|||.
T Consensus       204 --------~~~~a~~a~~~Gad~I~vg~~~G~~~~~~~~~~~g--------~p~~~~l~~v~~~~~~~-~ipVia~GGI~  266 (404)
T 1eep_A          204 --------TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVG--------VPQITAICDVYEACNNT-NICIIADGGIR  266 (404)
T ss_dssp             --------SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCC--------CCHHHHHHHHHHHHTTS-SCEEEEESCCC
T ss_pred             --------cHHHHHHHHhcCCCEEEECCCCCcCcCccccCCCC--------cchHHHHHHHHHHHhhc-CceEEEECCCC
Confidence                    146789999999999999      22221112221        135666666665   44 79999999999


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      |++|+.+++.. ||+|++||+++..|+..
T Consensus       267 ~~~d~~~ala~GAd~V~iG~~~l~~~e~~  295 (404)
T 1eep_A          267 FSGDVVKAIAAGADSVMIGNLFAGTKESP  295 (404)
T ss_dssp             SHHHHHHHHHHTCSEEEECHHHHTBTTSS
T ss_pred             CHHHHHHHHHcCCCHHhhCHHHhcCCCCC
Confidence            99999999987 99999999999887764

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=99.38  E-value=7.3e-12  Score=119.06  Aligned_cols=150  Identities=10%  Similarity=0.048  Sum_probs=127.2

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|+-..+.+.+++.|+++|+.+.+.||+.|+|++||                +++...++++++|+++ ++++.++.+-
T Consensus       136 ~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~gd~~l~vD~n~  199 (384)
T 2pgw_A          136 AVGYFYFLQGETAEELARDAAVGHAQGERVFYLKVGR----------------GEKLDLEITAAVRGEIGDARLRLDANE  199 (384)
T ss_dssp             EEEBCEECCCSSHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHTTSTTCEEEEECTT
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHHHcCCCEEEECcCC----------------CHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence            3455566677899999999999999999999999886                5788899999999998 6888888887


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+.    ++..++++.+++.|+++|.        +.        .++.||+..+++++.+ ++||++++.+.|++++.+
T Consensus       200 ~~~~----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~~~~~~~~l~~~~-~iPI~~de~i~~~~~~~~  258 (384)
T 2pgw_A          200 GWSV----HDAINMCRKLEKYDIEFIE--------QP--------TVSWSIPAMAHVREKV-GIPIVADQAAFTLYDVYE  258 (384)
T ss_dssp             CCCH----HHHHHHHHHHGGGCCSEEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred             CCCH----HHHHHHHHHHHhcCCCEEe--------CC--------CChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHHH
Confidence            7764    3578999999999999884        11        1246899999999998 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      +++.  ||+|++..+.++.++-+.++.+..
T Consensus       259 ~i~~~~~d~v~ik~~~~GGit~~~~i~~~A  288 (384)
T 2pgw_A          259 ICRQRAADMICIGPREIGGIQPMMKAAAVA  288 (384)
T ss_dssp             HHHTTCCSEEEECHHHHTSHHHHHHHHHHH
T ss_pred             HHHcCCCCEEEEcchhhCCHHHHHHHHHHH
Confidence            9975  999999999999999887776543

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.36  E-value=8e-12  Score=109.72  Aligned_cols=159  Identities=11%  Similarity=0.149  Sum_probs=110.5

Q ss_pred             CeEEEecCC----CHHHHHHHHHHHHHcCCCEEEec-----------cCCCccccccCc--------------------c
Q psy2386          47 PIAFQVGDN----EPKKLAKSAKIIQKWGYDEINLN-----------CGCPSNRVQNGF--------------------F   91 (311)
Q Consensus        47 p~~~Ql~g~----~~~~~~~aa~~~~~~g~d~IdiN-----------~gCP~~~v~~~~--------------------~   91 (311)
                      -+.+|+.+.    +++...+.|+.+.+.|+++|.++           .++|.-...+..                    .
T Consensus         8 ~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~   87 (223)
T 1y0e_A            8 IVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES   87 (223)
T ss_dssp             EEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred             EEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhC
Confidence            367888888    77889999999999999999887           567873222211                    1


Q ss_pred             cCc-------ccCCh-HHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCcccccc
Q psy2386          92 GAI-------LMTKP-LLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKK  160 (311)
Q Consensus        92 G~~-------Ll~~~-~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G  160 (311)
                      |+.       ...+| +.+.++++.+++.. +.++.+.+.       +    .+-+..+++.|+|+|.+.  +.|....+
T Consensus        88 Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~-------t----~~e~~~~~~~G~d~i~~~~~g~t~~~~~  156 (223)
T 1y0e_A           88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIA-------T----VEEAKNAARLGFDYIGTTLHGYTSYTQG  156 (223)
T ss_dssp             TCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECS-------S----HHHHHHHHHTTCSEEECTTTTSSTTSTT
T ss_pred             CCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCC-------C----HHHHHHHHHcCCCEEEeCCCcCcCCCCC
Confidence            211       11234 34567777777765 566665432       1    233667899999999763  33321111


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                            ......+++.++++++.+ ++||+++|||.|++++.++++. ||+|++||+++. |+..
T Consensus       157 ------~~~~~~~~~~~~~~~~~~-~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~-p~~~  213 (223)
T 1y0e_A          157 ------QLLYQNDFQFLKDVLQSV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR-PKEI  213 (223)
T ss_dssp             ------CCTTHHHHHHHHHHHHHC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC-HHHH
T ss_pred             ------CCCCcccHHHHHHHHhhC-CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC-cHHH
Confidence                  011234789999999998 8999999999999999999987 999999999776 6644

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=99.34  E-value=4.1e-12  Score=117.27  Aligned_cols=170  Identities=19%  Similarity=0.250  Sum_probs=106.2

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+++++.   +|.+   .|+.+.+.|+|+|.+.  ||.+...+...|+.++++++.+.+|.    +.+++||.+|+|.++
T Consensus        22 ~g~i~~~---~~~~---~a~~~~~~Ga~~I~~l--~p~~~~~~~~~G~~~~~~~~~i~~I~----~~~~iPv~~k~r~g~   89 (305)
T 2nv1_A           22 GGVIMDV---INAE---QAKIAEEAGAVAVMAL--ERVPADIRAAGGVARMADPTIVEEVM----NAVSIPVMAKARIGH   89 (305)
T ss_dssp             TCEEEEE---SSHH---HHHHHHHTTCSEEEEC--CC-------CCCCCCCCCHHHHHHHH----HHCSSCEEEEECTTC
T ss_pred             CCeeecC---CHHH---HHHHHHHcCCCEEEEc--CCCcchhhhccCcccCCCHHHHHHHH----HhCCCCEEecccccc
Confidence            4577644   5544   5566778899999554  37777777777888999998877764    446899999999854


Q ss_pred             CC---------------------CC---cH-------------HHHHHHHHHHHHcCCCEEEEec--------------C
Q psy2386         126 DD---------------------IN---SY-------------DFVRDFVGTVSSAGCRTFIVHA--------------R  154 (311)
Q Consensus       126 ~~---------------------~~---~~-------------~~~~e~~~~l~~~G~~~itvh~--------------R  154 (311)
                      .+                     .+   ..             ....+..+. .+.|+++|.++|              |
T Consensus        90 ~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a-~~~Gad~V~~~G~~g~g~~~~~~~h~r  168 (305)
T 2nv1_A           90 IVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRR-IAEGASMLRTKGEPGTGNIVEAVRHMR  168 (305)
T ss_dssp             HHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHH-HHTTCSEEEECCCTTSCCTHHHHHHHH
T ss_pred             hHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHH-HHCCCCEEEeccccCccchHHHHhhhh
Confidence            10                     00   00             011232333 366777777743              1


Q ss_pred             cc-----ccccCCCCcCCC----CCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhh--C
Q psy2386         155 NA-----FLKKLNPKQNRK----IPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYK--N  220 (311)
Q Consensus       155 t~-----~~~G~~g~~~~~----~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~--~  220 (311)
                      +.     ...|+++. ..+    ..+.++++++++++.. ++||+  ++|||.|++|+.++++. ||+|++||+++.  |
T Consensus       169 t~~~~i~~l~gi~~~-~~~~~~~~~~~~~~~i~~i~~~~-~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~  246 (305)
T 2nv1_A          169 KVNAQVRKVVAMSED-ELMTEAKNLGAPYELLLQIKKDG-KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDN  246 (305)
T ss_dssp             HHHHHHHHHHHSCGG-GHHHHHHHHTCCHHHHHHHHHHT-SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSC
T ss_pred             hhhccchhhccccch-hhhcccccccccHHHHHHHHHhc-CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCC
Confidence            10     00122111 111    0346899999999987 79999  99999999999999986 999999999996  4


Q ss_pred             Cc-chHHhHhh
Q psy2386         221 PF-LMSNFDLN  230 (311)
Q Consensus       221 P~-i~~~~~~~  230 (311)
                      |+ ..+++.+.
T Consensus       247 p~~~~~~l~~~  257 (305)
T 2nv1_A          247 PAKFAKAIVEA  257 (305)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            54 34444443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.31  E-value=2.5e-11  Score=119.15  Aligned_cols=135  Identities=14%  Similarity=0.155  Sum_probs=99.2

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          53 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        53 ~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      .|..++.+..+ +.+.++|+|.|+||..||               +.+.+.++++++++.. ++||.++--.        
T Consensus       226 vG~~~d~~~~a-~~l~~aG~d~I~id~a~g---------------~~~~~~~~i~~ir~~~p~~~Vi~g~v~--------  281 (496)
T 4fxs_A          226 VGAAPGNEERV-KALVEAGVDVLLIDSSHG---------------HSEGVLQRIRETRAAYPHLEIIGGNVA--------  281 (496)
T ss_dssp             CCSSSCCHHHH-HHHHHTTCSEEEEECSCT---------------TSHHHHHHHHHHHHHCTTCCEEEEEEC--------
T ss_pred             eccccchHHHH-HHHHhccCceEEeccccc---------------cchHHHHHHHHHHHHCCCceEEEcccC--------
Confidence            35555545444 445567999999999987               3356778899999887 7899884221        


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--CCeEEEecCCCCHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--ELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi~nGgI~s~~da~~  203 (311)
                        ..+.++.+.++|+|+|.+-      ..+....|.        +..++..+.++++.+.  ++|||++|||.+++|+.+
T Consensus       282 --t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~--------g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~k  351 (496)
T 4fxs_A          282 --TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGV--------GVPQITAIADAAGVANEYGIPVIADGGIRFSGDISK  351 (496)
T ss_dssp             --SHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCC--------CCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHH
T ss_pred             --cHHHHHHHHHhCCCEEEECCCCCcCcccccccCC--------CccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHH
Confidence              1467899999999999983      222222232        1247777777776321  699999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCC
Q psy2386         204 HLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P  221 (311)
                      +++. ||+||+||++++-.
T Consensus       352 ala~GAd~V~iGs~f~~t~  370 (496)
T 4fxs_A          352 AIAAGASCVMVGSMFAGTE  370 (496)
T ss_dssp             HHHTTCSEEEESTTTTTBT
T ss_pred             HHHcCCCeEEecHHHhcCC
Confidence            9987 99999999987644

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.30  E-value=5.4e-11  Score=112.18  Aligned_cols=181  Identities=17%  Similarity=0.228  Sum_probs=121.1

Q ss_pred             CCCCHHHHH-HHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccC
Q psy2386           2 NLTDRHCRM-FHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCG   80 (311)
Q Consensus         2 ~~td~~fR~-l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~g   80 (311)
                      ++|+..+.. +++..| .++... ..+.+.+.. .-+.++ .....|+.++++-++    .+.++.+.++|+|.|.||.+
T Consensus        55 ~vt~~~lA~avA~~GG-lgii~~-~~s~e~~~~-~I~~vk-~~~~~pvga~ig~~~----~e~a~~l~eaGad~I~ld~a  126 (361)
T 3khj_A           55 TVTEHLMAVGMARLGG-IGIIHK-NMDMESQVN-EVLKVK-NSGGLRVGAAIGVNE----IERAKLLVEAGVDVIVLDSA  126 (361)
T ss_dssp             TTCSHHHHHHHHHTTC-EEEECS-SSCHHHHHH-HHHHHH-HTTCCCCEEEECTTC----HHHHHHHHHTTCSEEEECCS
T ss_pred             CCCcHHHHHHHHHcCC-CeEEec-CCCHHHHHH-HHHHHH-hccCceEEEEeCCCH----HHHHHHHHHcCcCeEEEeCC
Confidence            577887776 445544 344432 112222110 001111 123578999997666    45566677889999999955


Q ss_pred             CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC------
Q psy2386          81 CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR------  154 (311)
Q Consensus        81 CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R------  154 (311)
                      .               .+++.+.+.++.+++..++||.++.-.          ..+.++.+.++|+|+|.+...      
T Consensus       127 ~---------------G~~~~~~~~i~~i~~~~~~~Vivg~v~----------t~e~A~~l~~aGaD~I~VG~~~Gs~~~  181 (361)
T 3khj_A          127 H---------------GHSLNIIRTLKEIKSKMNIDVIVGNVV----------TEEATKELIENGADGIKVGIGPGSICT  181 (361)
T ss_dssp             C---------------CSBHHHHHHHHHHHHHCCCEEEEEEEC----------SHHHHHHHHHTTCSEEEECSSCCTTCC
T ss_pred             C---------------CCcHHHHHHHHHHHHhcCCcEEEccCC----------CHHHHHHHHHcCcCEEEEecCCCcCCC
Confidence            3               146777888999988889999885331          146789999999999999311      


Q ss_pred             ccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         155 NAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       155 t~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      ++...|        .+...++.+.+++   +.+ ++|||+.|||.+++|+.+++.. ||+||+|++++..+...
T Consensus       182 tr~~~g--------~g~p~~~~i~~v~~~~~~~-~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp  246 (361)
T 3khj_A          182 TRIVAG--------VGVPQITAIEKCSSVASKF-GIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESP  246 (361)
T ss_dssp             HHHHTC--------BCCCHHHHHHHHHHHHHHH-TCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSS
T ss_pred             cccccC--------CCCCcHHHHHHHHHHHhhc-CCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCC
Confidence            111111        1123566666664   344 7999999999999999999987 99999999999877543

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=99.30  E-value=6.2e-12  Score=112.37  Aligned_cols=103  Identities=17%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK  196 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~  196 (311)
                      +.||+|- |.+.... ++.++++.+++.|+++|+++..++...+         ...+++.++++++.+ ++||+++|||+
T Consensus        22 ~~v~~~~-~~~~~~~-~~~~~a~~~~~~G~~~i~v~d~~~~~~~---------~~~~~~~i~~i~~~~-~ipvi~~Ggi~   89 (247)
T 3tdn_A           22 FMVFTYS-GKKNTGI-LLRDWVVEVEKRGAGEILLTSIDRDGTK---------SGYDTEMIRFVRPLT-TLPIIASGGAG   89 (247)
T ss_dssp             EEEEETT-TTEEEEE-EHHHHHHHHHHTTCSEEEEEETTTTTCS---------SCCCHHHHHHHGGGC-CSCEEEESCCC
T ss_pred             EEEEEcC-CeecCCC-CHHHHHHHHHHcCCCEEEEEecCcccCC---------CcccHHHHHHHHHhC-CCCEEEeCCCC
Confidence            5788884 4443222 4679999999999999999987641111         135899999999998 89999999999


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      |++++.++++. ||+|++||+++.||+++.++.+.+
T Consensus        90 ~~~~~~~~l~~Gad~V~ig~~~l~dp~~~~~~~~~~  125 (247)
T 3tdn_A           90 KMEHFLEAFLRGADKVSINTAAVENPSLITQIAQTF  125 (247)
T ss_dssp             SHHHHHHHHHTTCSEECCSHHHHHCTHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCeeehhhHHhhChHHHHHHHHHh
Confidence            99999999987 999999999999999998887654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.29  E-value=3e-11  Score=118.39  Aligned_cols=139  Identities=12%  Similarity=0.172  Sum_probs=101.8

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+.+ |.+++.+..+. .+.++|+|.|.||.+|+.               ++.+.++++++++.. ++||.++--.   
T Consensus       220 v~aav-G~~~~~~~~a~-~l~~aG~d~I~id~a~g~---------------~~~~~~~v~~i~~~~p~~~Vi~g~v~---  279 (490)
T 4avf_A          220 VGAAV-GTGADTGERVA-ALVAAGVDVVVVDTAHGH---------------SKGVIERVRWVKQTFPDVQVIGGNIA---  279 (490)
T ss_dssp             CEEEE-CSSTTHHHHHH-HHHHTTCSEEEEECSCCS---------------BHHHHHHHHHHHHHCTTSEEEEEEEC---
T ss_pred             eeeee-ccccchHHHHH-HHhhcccceEEecccCCc---------------chhHHHHHHHHHHHCCCceEEEeeeC---
Confidence            33444 55555555544 455679999999988874               456778899999887 7899885221   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCH
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTK  198 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~  198 (311)
                             ..+.++.+.++|+|+|.+-      ..+....|.        +..+++.+.++++.+  .++|||+.|||.++
T Consensus       280 -------t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~--------g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~  344 (490)
T 4avf_A          280 -------TAEAAKALAEAGADAVKVGIGPGSICTTRIVAGV--------GVPQISAIANVAAALEGTGVPLIADGGIRFS  344 (490)
T ss_dssp             -------SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCB--------CCCHHHHHHHHHHHHTTTTCCEEEESCCCSH
T ss_pred             -------cHHHHHHHHHcCCCEEEECCCCCcCCCccccCCC--------CccHHHHHHHHHHHhccCCCcEEEeCCCCCH
Confidence                   1467899999999999982      222111221        234788888887743  16999999999999


Q ss_pred             HHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         199 KEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       199 ~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      +|+.++++. ||+||+|++++.-.
T Consensus       345 ~di~kal~~GAd~V~vGs~~~~~~  368 (490)
T 4avf_A          345 GDLAKAMVAGAYCVMMGSMFAGTE  368 (490)
T ss_dssp             HHHHHHHHHTCSEEEECTTTTTBT
T ss_pred             HHHHHHHHcCCCeeeecHHHhcCC
Confidence            999999987 99999999997744

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.29  E-value=2.6e-11  Score=107.31  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=107.5

Q ss_pred             CCCeEEEecCCC----HH--HHHHHHHHHHHcCCCEEEec-----------cCCCccccccC------------------
Q psy2386          45 EHPIAFQVGDNE----PK--KLAKSAKIIQKWGYDEINLN-----------CGCPSNRVQNG------------------   89 (311)
Q Consensus        45 ~~p~~~Ql~g~~----~~--~~~~aa~~~~~~g~d~IdiN-----------~gCP~~~v~~~------------------   89 (311)
                      ..++++|....+    ++  .+.+.|+.+.+.|+++|.+|           .++|.-.+.++                  
T Consensus        17 ~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~   96 (234)
T 1yxy_A           17 GIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQ   96 (234)
T ss_dssp             SCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHH
T ss_pred             CEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecCCHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHH
Confidence            445666666544    66  77777888888888888887           45665221111                  


Q ss_pred             --cccCcc-------cCCh--HHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE--EEecCc
Q psy2386          90 --FFGAIL-------MTKP--LLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF--IVHARN  155 (311)
Q Consensus        90 --~~G~~L-------l~~~--~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i--tvh~Rt  155 (311)
                        ..|+..       ..+|  +.+.++++.+++.. +.++.+.++.           .+-+..+.++|+|+|  ++++.+
T Consensus        97 ~~~~Gad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t-----------~~ea~~a~~~Gad~i~~~v~g~~  165 (234)
T 1yxy_A           97 LAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADIST-----------FDEGLVAHQAGIDFVGTTLSGYT  165 (234)
T ss_dssp             HHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSS-----------HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHcCCCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCC-----------HHHHHHHHHcCCCEEeeeccccC
Confidence              122211       1223  24567788887765 6666664431           233778889999999  787765


Q ss_pred             cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ...+++        .+.+++.++++++.  ++||++.|||+|++++.++++. ||+|++||+++. |+
T Consensus       166 ~~~~~~--------~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~-p~  222 (234)
T 1yxy_A          166 PYSRQE--------AGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR-PK  222 (234)
T ss_dssp             TTSCCS--------SSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC-HH
T ss_pred             CCCcCC--------CCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC-hH
Confidence            311111        23589999999886  6999999999999999999987 999999999987 64

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.28  E-value=3.5e-11  Score=118.63  Aligned_cols=142  Identities=13%  Similarity=0.119  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      |.+++.+. .++.+.++|+|.|+||.+|.               +++...++++++++.+ ++||.+|-=      .   
T Consensus       251 G~~~~~~~-~a~~~~~aG~d~v~i~~~~G---------------~~~~~~~~i~~i~~~~~~~pvi~~~v------~---  305 (514)
T 1jcn_A          251 GTREDDKY-RLDLLTQAGVDVIVLDSSQG---------------NSVYQIAMVHYIKQKYPHLQVIGGNV------V---  305 (514)
T ss_dssp             CSSTTHHH-HHHHHHHTTCSEEEECCSCC---------------CSHHHHHHHHHHHHHCTTCEEEEEEE------C---
T ss_pred             cCchhhHH-HHHHHHHcCCCEEEeeccCC---------------cchhHHHHHHHHHHhCCCCceEeccc------c---
Confidence            44555444 45557779999999998873               2366778999999988 899988611      1   


Q ss_pred             HHHHHHHHHHHcCCCEEEEe---cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         133 FVRDFVGTVSSAGCRTFIVH---ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh---~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                       ..+.++.+.++|+|+|.+.   |.+.+.....+.  ....+..+..+.++++.+ ++|||+.|||++++|+.+++.. |
T Consensus       306 -t~~~a~~l~~aGad~I~vg~~~G~~~~t~~~~~~--g~~~~~~~~~~~~~~~~~-~ipVia~GGI~~~~di~kala~GA  381 (514)
T 1jcn_A          306 -TAAQAKNLIDAGVDGLRVGMGCGSICITQEVMAC--GRPQGTAVYKVAEYARRF-GVPIIADGGIQTVGHVVKALALGA  381 (514)
T ss_dssp             -SHHHHHHHHHHTCSEEEECSSCSCCBTTBCCCSC--CCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTC
T ss_pred             -hHHHHHHHHHcCCCEEEECCCCCcccccccccCC--CccchhHHHHHHHHHhhC-CCCEEEECCCCCHHHHHHHHHcCC
Confidence             1467899999999999882   111110000000  000123578888998887 8999999999999999999987 9


Q ss_pred             CEEEEehhhhhCCcch
Q psy2386         209 DGVMLGREAYKNPFLM  224 (311)
Q Consensus       209 dgVmigRa~l~~P~i~  224 (311)
                      |+||+||+++..|+..
T Consensus       382 d~V~iG~~~l~~~e~~  397 (514)
T 1jcn_A          382 STVMMGSLLAATTEAP  397 (514)
T ss_dssp             SEEEESTTTTTSTTSS
T ss_pred             CeeeECHHHHcCCcCC
Confidence            9999999999988644

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.25  E-value=1.7e-10  Score=108.35  Aligned_cols=177  Identities=15%  Similarity=0.153  Sum_probs=120.4

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceecccccCCchhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGC   81 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~~~~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gC   81 (311)
                      .+|+..+...+.+.|.. -+.+.+.+.+.+..    ..+  ....++.+.+ |. ++...+.++.+.++|+|.|.|+..+
T Consensus        52 ~vte~~lA~A~a~~Gg~-gvi~~~~s~ee~~~----~i~--~~~~~~~~~~-g~-~~~~~e~~~~a~~aGvdvI~id~a~  122 (361)
T 3r2g_A           52 TITESNMANFMHSKGAM-GALHRFMTIEENIQ----EFK--KCKGPVFVSV-GC-TENELQRAEALRDAGADFFCVDVAH  122 (361)
T ss_dssp             TTCSHHHHHHHHHTTCE-EBCCSCSCHHHHHH----HHH--TCCSCCBEEE-CS-SHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CchHHHHHHHHHHcCCC-EEEeCCCCHHHHHH----HHh--hcceEEEEEc-CC-CHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            46888999988888842 33444444444320    010  0012334444 33 3455667888888999999998655


Q ss_pred             CccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--ecCcc-c
Q psy2386          82 PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--HARNA-F  157 (311)
Q Consensus        82 P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--h~Rt~-~  157 (311)
                      ..               ++.+.++++.+++.. ++||.+|--.          ..+-++.+.++|+|+|.|  |+... .
T Consensus       123 G~---------------~~~~~e~I~~ir~~~~~~~Vi~G~V~----------T~e~A~~a~~aGaD~I~Vg~g~G~~~~  177 (361)
T 3r2g_A          123 AH---------------AKYVGKTLKSLRQLLGSRCIMAGNVA----------TYAGADYLASCGADIIKAGIGGGSVCS  177 (361)
T ss_dssp             CS---------------SHHHHHHHHHHHHHHTTCEEEEEEEC----------SHHHHHHHHHTTCSEEEECCSSSSCHH
T ss_pred             CC---------------cHhHHHHHHHHHHhcCCCeEEEcCcC----------CHHHHHHHHHcCCCEEEEcCCCCcCcc
Confidence            32               245678899999876 7899987221          146689999999999998  33211 0


Q ss_pred             ---cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         158 ---LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       158 ---~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                         ..|.        +...++.|.++++.. . |||+.|||.++.|+.++++. ||+||+||+++....
T Consensus       178 tr~~~g~--------g~p~l~aI~~~~~~~-~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~E  236 (361)
T 3r2g_A          178 TRIKTGF--------GVPMLTCIQDCSRAD-R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAP  236 (361)
T ss_dssp             HHHHHCC--------CCCHHHHHHHHTTSS-S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTT
T ss_pred             ccccCCc--------cHHHHHHHHHHHHhC-C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcc
Confidence               1111        113677788887765 4 99999999999999999987 999999999987753

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=99.24  E-value=2.5e-10  Score=101.97  Aligned_cols=156  Identities=12%  Similarity=0.257  Sum_probs=111.8

Q ss_pred             CCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEe
Q psy2386          46 HPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHR  122 (311)
Q Consensus        46 ~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR  122 (311)
                      .++-+|++|-  +.++    ++.+-+.|+|-|-||              ++..++|+++.++.+..-.. +-+-+.+|.+
T Consensus        74 ~~~pl~vGGGIrs~e~----~~~~l~~GadkVii~--------------t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~  135 (243)
T 4gj1_A           74 VSVNLQVGGGIRSKEE----VKALLDCGVKRVVIG--------------SMAIKDATLCLEILKEFGSEAIVLALDTILK  135 (243)
T ss_dssp             CCSEEEEESSCCCHHH----HHHHHHTTCSEEEEC--------------TTTTTCHHHHHHHHHHHCTTTEEEEEEEEES
T ss_pred             cCCCeEeccccccHHH----HHHHHHcCCCEEEEc--------------cccccCCchHHHHHhcccCceEEEEEEEEeC
Confidence            4566888874  4443    344557899999886              67789999999999887543 2223333322


Q ss_pred             -------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         123 -------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       123 -------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                             -||...... .+.++++.+++.|+..|.++.  |..+.+|           .|.+.++++++.++++|||++|
T Consensus       136 ~~~~v~~~gw~~~~~~-~~~~~~~~~~~~g~~eil~t~Id~DGt~~G-----------~d~~l~~~l~~~~~~ipviasG  203 (243)
T 4gj1_A          136 EDYVVAVNAWQEASDK-KLMEVLDFYSNKGLKHILCTDISKDGTMQG-----------VNVRLYKLIHEIFPNICIQASG  203 (243)
T ss_dssp             SSEEEC--------CC-BHHHHHHHHHTTTCCEEEEEETTC-----C-----------CCHHHHHHHHHHCTTSEEEEES
T ss_pred             CCCEEEecCceecccc-hHHHHHHHHhhcCCcEEEeeeecccccccC-----------CCHHHHHHHHHhcCCCCEEEEc
Confidence                   145443332 467999999999999999984  4444455           4899999999987679999999


Q ss_pred             CCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         194 GIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       194 gI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      |+.|.+|+.++...++||.+|++++.+-.-++++.+.+
T Consensus       204 Gv~~~~Dl~~l~~~~~gvivg~Al~~g~i~l~ea~~~l  241 (243)
T 4gj1_A          204 GVASLKDLENLKGICSGVIVGKALLDGVFSVEEGIRCL  241 (243)
T ss_dssp             CCCSHHHHHHTTTTCSEEEECHHHHTTSSCHHHHHHHH
T ss_pred             CCCCHHHHHHHHccCchhehHHHHHCCCCCHHHHHHHh
Confidence            99999999886444999999999999888888877654

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.24  E-value=6.3e-11  Score=104.94  Aligned_cols=123  Identities=11%  Similarity=0.034  Sum_probs=94.1

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      ..+.++|+|.|-++..+              ..+|+.+.++++.+++. +.++.+.+..           .+.++.+++.
T Consensus        95 ~~~~~aGad~I~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~t-----------~eea~~a~~~  148 (229)
T 3q58_A           95 DALAQAGADIIAFDASF--------------RSRPVDIDSLLTRIRLH-GLLAMADCST-----------VNEGISCHQK  148 (229)
T ss_dssp             HHHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECSS-----------HHHHHHHHHT
T ss_pred             HHHHHcCCCEEEECccc--------------cCChHHHHHHHHHHHHC-CCEEEEecCC-----------HHHHHHHHhC
Confidence            34567899999887443              24567788899998874 7888876532           4678889999


Q ss_pred             CCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         145 GCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       145 G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      |+|+|.+  ||.|..  +       .....+|+.++++++.  ++|||++|||.|++|+.++++. ||+|++|++++ +|
T Consensus       149 Gad~Ig~~~~g~t~~--~-------~~~~~~~~li~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~-~p  216 (229)
T 3q58_A          149 GIEFIGTTLSGYTGP--I-------TPVEPDLAMVTQLSHA--GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAIT-RI  216 (229)
T ss_dssp             TCSEEECTTTTSSSS--C-------CCSSCCHHHHHHHHTT--TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHH-CH
T ss_pred             CCCEEEecCccCCCC--C-------cCCCCCHHHHHHHHHc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhc-Ch
Confidence            9999954  555431  1       1223589999999875  7999999999999999999987 99999997776 57


Q ss_pred             cchH
Q psy2386         222 FLMS  225 (311)
Q Consensus       222 ~i~~  225 (311)
                      |.+.
T Consensus       217 ~~~~  220 (229)
T 3q58_A          217 EHIC  220 (229)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.21  E-value=1.2e-10  Score=103.40  Aligned_cols=122  Identities=11%  Similarity=0.054  Sum_probs=93.5

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      +.+.++|+|.|=++..+              ..+|+.+.++++.+++. ++++.+.+..           .+.++.+++.
T Consensus        95 ~~~~~~Gad~V~l~~~~--------------~~~p~~l~~~i~~~~~~-g~~v~~~v~t-----------~eea~~a~~~  148 (232)
T 3igs_A           95 DALAQAGAAIIAVDGTA--------------RQRPVAVEALLARIHHH-HLLTMADCSS-----------VDDGLACQRL  148 (232)
T ss_dssp             HHHHHHTCSEEEEECCS--------------SCCSSCHHHHHHHHHHT-TCEEEEECCS-----------HHHHHHHHHT
T ss_pred             HHHHHcCCCEEEECccc--------------cCCHHHHHHHHHHHHHC-CCEEEEeCCC-----------HHHHHHHHhC
Confidence            34567899999887432              34667788899998874 7888876532           4668889999


Q ss_pred             CCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         145 GCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       145 G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      |+|+|.+  |++|..  +       .....+|+.++++++.  ++|||++|||.|++|+.++++. ||||+||++++ +|
T Consensus       149 Gad~Ig~~~~g~t~~--~-------~~~~~~~~~i~~l~~~--~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~-~p  216 (232)
T 3igs_A          149 GADIIGTTMSGYTTP--D-------TPEEPDLPLVKALHDA--GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAIT-RL  216 (232)
T ss_dssp             TCSEEECTTTTSSSS--S-------CCSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH-CH
T ss_pred             CCCEEEEcCccCCCC--C-------CCCCCCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhc-CH
Confidence            9999964  455431  1       0123589999999986  7999999999999999999987 99999998877 57


Q ss_pred             cch
Q psy2386         222 FLM  224 (311)
Q Consensus       222 ~i~  224 (311)
                      +..
T Consensus       217 ~~~  219 (232)
T 3igs_A          217 EHI  219 (232)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=99.21  E-value=1.3e-10  Score=109.42  Aligned_cols=151  Identities=10%  Similarity=0.009  Sum_probs=124.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-..++-.+|+.|+++|+.+.+.||+.|+|++||+               +++...++++++|+++  ++++.++.+
T Consensus       133 ~vp~~~~~g~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan  197 (359)
T 1mdl_A          133 PVQAYDSHSLDGVKLATERAVTAAELGFRAVKTRIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYN  197 (359)
T ss_dssp             CEEEEEECCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred             CeeeeeecCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            34555454336899999999999999999999999883               4677889999999987  689999998


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++++.+.|++++.
T Consensus       198 ~~~~~----~~a~~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~~~~-~iPI~~de~~~~~~~~~  256 (359)
T 1mdl_A          198 QSLDV----PAAIKRSQALQQEGVTWIE--------EP--------TLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMF  256 (359)
T ss_dssp             TCSCH----HHHHHHHHHHHHHTCSCEE--------CC--------SCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHH
T ss_pred             CCCCH----HHHHHHHHHHHHhCCCeEE--------CC--------CChhhHHHHHHHHHhC-CCCEEeCCCCCCHHHHH
Confidence            88864    3578999999999999872        11        1235899999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++++.  ||+|++-.+-.+..+-+.++.+..
T Consensus       257 ~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~A  287 (359)
T 1mdl_A          257 KALSIGACRLAMPDAMKIGGVTGWIRASALA  287 (359)
T ss_dssp             HHHHTTCCSEECCBTTTTTHHHHHHHHHHHH
T ss_pred             HHHHcCCCCEEeecchhhCCHHHHHHHHHHH
Confidence            99976  999999998888887777765543

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=99.20  E-value=1.3e-10  Score=106.49  Aligned_cols=196  Identities=11%  Similarity=0.095  Sum_probs=135.1

Q ss_pred             CHHHHHHHHHhCCCcEEEecc-eec--cccc--CC-c-hhcccc-----CCCCCCeEEEe---cCCCHHHHHHHHHHHHH
Q psy2386           5 DRHCRMFHRQITRYSWLYTEM-FTT--QAIL--GN-K-KHCLDF-----NAEEHPIAFQV---GDNEPKKLAKSAKIIQK   69 (311)
Q Consensus         5 d~~fR~l~~~~g~~~l~~tem-v~a--~~l~--~~-~-~~~l~~-----~~~~~p~~~Ql---~g~~~~~~~~aa~~~~~   69 (311)
                      |..+=+++.+.|-..+..|-- ++.  .+.-  +. + ..++..     ...+.|+++.+   +|.+|+...+.++.+.+
T Consensus        26 D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~  105 (295)
T 1xg4_A           26 NANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIK  105 (295)
T ss_dssp             SHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHH
Confidence            555666676777444555554 332  2221  10 1 112111     12347999999   88899999999999999


Q ss_pred             cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386          70 WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF  149 (311)
Q Consensus        70 ~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i  149 (311)
                      +|+++|.|+-+| .++++....|..|....+.+.+|..++....+.++.|.-|..-......++.++-++.++++|+|.|
T Consensus       106 aGa~gv~iEd~~-~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAGAd~i  184 (295)
T 1xg4_A          106 AGAAGLHIEDQV-GAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEML  184 (295)
T ss_dssp             HTCSEEEEECBC-SSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEE
T ss_pred             cCCeEEEECCCC-CCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcCCCEE
Confidence            999999999999 4555554445667766666666666665555778889989742211223568899999999999999


Q ss_pred             EEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC--CCHHHHHHHHh-h-cCEEEEehhhhh
Q psy2386         150 IVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI--KTKKEIDLHLN-Y-IDGVMLGREAYK  219 (311)
Q Consensus       150 tvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI--~s~~da~~~l~-~-adgVmigRa~l~  219 (311)
                      .+|+.+                 +++.++++.+.+ ++|+++|...  .++..-.+-|. . ++.|++|.+++.
T Consensus       185 ~~e~~~-----------------~~~~~~~i~~~~-~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~~~~~~  240 (295)
T 1xg4_A          185 FPEAIT-----------------ELAMYRQFADAV-QVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFR  240 (295)
T ss_dssp             EETTCC-----------------SHHHHHHHHHHH-CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHHH
T ss_pred             EEeCCC-----------------CHHHHHHHHHHc-CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEChHHHH
Confidence            999873                 688999999998 7999998865  33332223333 3 999999988764

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=99.20  E-value=2e-10  Score=103.87  Aligned_cols=155  Identities=12%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             CCCeEEEecCCC-----H--HHHHHHHHHHHHcCCCEE--EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          45 EHPIAFQVGDNE-----P--KKLAKSAKIIQKWGYDEI--NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~-----~--~~~~~aa~~~~~~g~d~I--diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.|+++|+.+.+     +  +.+.+.++.+.+.|+|.|  .+|.||+...           ...+.+.++++.+++ .++
T Consensus        79 ~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~~Ga~~v~~~l~~~~~~~~-----------~~~~~~~~v~~~~~~-~g~  146 (273)
T 2qjg_A           79 DVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDW-----------EAYRDLGMIAETCEY-WGM  146 (273)
T ss_dssp             CCEEEEECEECCTTSSSTTCCEECSCHHHHHHTTCSEEEEEEEETSTTHH-----------HHHHHHHHHHHHHHH-HTC
T ss_pred             CCCEEEEEcCCCcCCCCcccchHHHHHHHHHHcCCCEEEEEEecCCCCHH-----------HHHHHHHHHHHHHHH-cCC
Confidence            578999997655     2  123455666778899999  8888887321           112445566666554 488


Q ss_pred             eeEEEEec-cCC--CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         116 DITVKHRI-GID--DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       116 pvsvKiR~-g~~--~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      |+.+.+-. |+.  ...+.+...+.++.+++.|+|+|.++.                 +.+|+.++++++.+ ++||++.
T Consensus       147 ~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~-----------------~~~~~~l~~i~~~~-~ipvva~  208 (273)
T 2qjg_A          147 PLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSY-----------------TGDIDSFRDVVKGC-PAPVVVA  208 (273)
T ss_dssp             CEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECC-----------------CSSHHHHHHHHHHC-SSCEEEE
T ss_pred             CEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECC-----------------CCCHHHHHHHHHhC-CCCEEEE
Confidence            98887521 221  011122345666889999999998872                 14899999999988 7999999


Q ss_pred             cCCCC--HHHHHHHH----hh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         193 GGIKT--KKEIDLHL----NY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       193 GgI~s--~~da~~~l----~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      |||.+  .+|+.+++    +. |+||++||+++..||....+.+
T Consensus       209 GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~  252 (273)
T 2qjg_A          209 GGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRA  252 (273)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHH
Confidence            99995  88866554    34 9999999999999987765543

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=99.17  E-value=1.7e-10  Score=109.04  Aligned_cols=140  Identities=9%  Similarity=-0.022  Sum_probs=119.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ++++++++|+.+.+.||+.|.|++||+               +++...++++++|+++  ++++.|+.+-+|+.    ++
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~----~~  206 (371)
T 2ovl_A          146 PVADLKTQADRFLAGGFRAIKMKVGRP---------------DLKEDVDRVSALREHLGDSFPLMVDANMKWTV----DG  206 (371)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSCEEEECTTCSCH----HH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----HH
Confidence            899999999999999999999999984               4677889999999987  68999999888864    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++++.+.|++++.++++.  ||.|
T Consensus       207 a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~~~i~~~~~d~v  269 (371)
T 2ovl_A          207 AIRAARALAPFDLHWIE--------EP--------TIPDDLVGNARIVRES-GHTIAGGENLHTLYDFHNAVRAGSLTLP  269 (371)
T ss_dssp             HHHHHHHHGGGCCSEEE--------CC--------SCTTCHHHHHHHHHHH-CSCEEECTTCCSHHHHHHHHHHTCCSEE
T ss_pred             HHHHHHHHHhcCCCEEE--------CC--------CCcccHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCEE
Confidence            78999999999999872        11        1235899999999988 7999999999999999999976  9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++-.+-.+.++-+.++.+..
T Consensus       270 ~ik~~~~GGi~~~~~i~~~A  289 (371)
T 2ovl_A          270 EPDVSNIGGYTTFRKVAALA  289 (371)
T ss_dssp             CCCTTTTTSHHHHHHHHHHH
T ss_pred             eeCccccCCHHHHHHHHHHH
Confidence            99999999988777776543

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=99.17  E-value=3e-10  Score=107.69  Aligned_cols=146  Identities=8%  Similarity=-0.031  Sum_probs=121.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-..++..+|+.++++|+.+.+.||+.|+|++||                +++...++++++|+++  ++|+.++.+
T Consensus       134 ~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~d~~l~vDan  197 (379)
T 2rdx_A          134 GAPMYRVAPQRSEAETRAELARHRAAGYRQFQIKVGA----------------DWQSDIDRIRACLPLLEPGEKAMADAN  197 (379)
T ss_dssp             SEEBCEECCCSCSHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHGGGSCTTCEEEEECT
T ss_pred             ceeEEEEecCCCHHHHHHHHHHHHHcCCCEEEEeccC----------------CHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            3455555544789999999999999999999999887                4688889999999998  589999988


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.|+ +|.        +       . . + ||+..+++++.+ ++||++++.+.+++++.
T Consensus       198 ~~~~~----~~a~~~~~~l~~~~i-~iE--------~-------P-~-~-~~~~~~~l~~~~-~iPI~~de~i~~~~~~~  253 (379)
T 2rdx_A          198 QGWRV----DNAIRLARATRDLDY-ILE--------Q-------P-C-R-SYEECQQVRRVA-DQPMKLDECVTGLHMAQ  253 (379)
T ss_dssp             TCSCH----HHHHHHHHHTTTSCC-EEE--------C-------C-S-S-SHHHHHHHHTTC-CSCEEECTTCCSHHHHH
T ss_pred             CCCCH----HHHHHHHHHHHhCCe-EEe--------C-------C-c-C-CHHHHHHHHhhC-CCCEEEeCCcCCHHHHH
Confidence            88864    356899999999999 762        1       1 1 1 899999999988 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++++.  ||.|++-.+-.+.++-+.++.+.
T Consensus       254 ~~i~~~~~d~v~ik~~~~GGit~~~~i~~~  283 (379)
T 2rdx_A          254 RIVADRGAEICCLKISNLGGLSKARRTRDF  283 (379)
T ss_dssp             HHHHHTCCSEEEEETTTTTSHHHHHHHHHH
T ss_pred             HHHHcCCCCEEEEeccccCCHHHHHHHHHH
Confidence            99976  99999999988888777666543

>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}

Probab=99.15  E-value=3.3e-10  Score=107.50  Aligned_cols=148  Identities=9%  Similarity=-0.000  Sum_probs=126.6

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-.++++.+|+.+++.++.+.+.||+.|.|++||                +++.-.+++++||+++  ++++.|+.
T Consensus       133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiK~G~----------------~~~~d~~~v~avR~a~g~~~~l~vDa  196 (378)
T 3eez_A          133 TPRPIASSVGAKSVEETRAVIDRYRQRGYVAHSVKIGG----------------DVERDIARIRDVEDIREPGEIVLYDV  196 (378)
T ss_dssp             SCEEBBCCBCSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHTTSCCTTCEEEEEC
T ss_pred             CeEEEEEEecCCCHHHHHHHHHHHHhCCCCEEEeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence            45677888999999999999998888999999999987                3667788999999988  68999999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +-+|+..    +..++++.+++.|+ +|.               +   |..+|+..+++++.. ++||++++.+.|++|+
T Consensus       197 n~~~~~~----~a~~~~~~l~~~~i-~iE---------------q---P~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~  252 (378)
T 3eez_A          197 NRGWTRQ----QALRVMRATEDLHV-MFE---------------Q---PGETLDDIAAIRPLH-SAPVSVDECLVTLQDA  252 (378)
T ss_dssp             TTCCCHH----HHHHHHHHTGGGTC-CEE---------------C---CSSSHHHHHHTGGGC-CCCEEECTTCCSHHHH
T ss_pred             CCCCCHH----HHHHHHHHhccCCe-EEe---------------c---CCCCHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence            9999753    46789999999988 772               1   112899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .++++.  ||.|++-.+-.+.++-+.++.+..
T Consensus       253 ~~~l~~~~~d~v~ik~~~~GGit~~~~ia~~A  284 (378)
T 3eez_A          253 ARVARDGLAEVFGIKLNRVGGLTRAARMRDIA  284 (378)
T ss_dssp             HHHHHTTCCSEEEEEHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHcCCCCEEEeCchhcCCHHHHHHHHHHH
Confidence            999975  999999999999999887776543

>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*

Probab=99.14  E-value=4.7e-10  Score=105.91  Aligned_cols=149  Identities=15%  Similarity=0.249  Sum_probs=124.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-.++++.+|+++.++|+.+.+.||+.|.|++|+                +++...++++++|+++  ++++.++.+
T Consensus       130 ~v~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDan  193 (369)
T 2p8b_A          130 EFPVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT----------------NVKEDVKRIEAVRERVGNDIAIRVDVN  193 (369)
T ss_dssp             CEECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             ceeeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            4556678888899999999999999999999999874                4788889999999987  688999988


Q ss_pred             ccCCCCCcHHHHH-HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         123 IGIDDINSYDFVR-DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       123 ~g~~~~~~~~~~~-e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      -+|+..    +.. ++++.+++.|+++|.        +-        .++.||+..+++++.+ ++||++++.+.+++++
T Consensus       194 ~~~~~~----~a~~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~  252 (369)
T 2p8b_A          194 QGWKNS----ANTLTALRSLGHLNIDWIE--------QP--------VIADDIDAMAHIRSKT-DLPLMIDEGLKSSREM  252 (369)
T ss_dssp             TTTBSH----HHHHHHHHTSTTSCCSCEE--------CC--------BCTTCHHHHHHHHHTC-CSCEEESTTCCSHHHH
T ss_pred             CCCCHH----HHHHHHHHHHHhCCCcEEE--------CC--------CCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHH
Confidence            888653    467 899999999999873        11        1345899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .++++.  ||+|++-.+-.+..+-+.++.+.
T Consensus       253 ~~~i~~~~~d~v~ik~~~~GGit~~~~i~~~  283 (369)
T 2p8b_A          253 RQIIKLEAADKVNIKLMKCGGIYPAVKLAHQ  283 (369)
T ss_dssp             HHHHHHTCCSEEEECHHHHTSHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEeecchhCCHHHHHHHHHH
Confidence            999975  99999999888888767666543

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=99.13  E-value=4.2e-10  Score=107.07  Aligned_cols=146  Identities=10%  Similarity=0.042  Sum_probs=120.7

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      .|+-..++ ..++++|+++|+.+.+.||+.|+|++||               .+++. .++++++|+++  ++++.++..
T Consensus       153 vp~~~~~g~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~-~e~v~avr~a~g~d~~l~vDan  216 (388)
T 2nql_A          153 FPAYVSGLPERTLKARGELAKYWQDRGFNAFKFATPV---------------ADDGP-AAEIANLRQVLGPQAKIAADMH  216 (388)
T ss_dssp             EEEEEECCCCSSHHHHHHHHHHHHHTTCCEEEEEGGG---------------CTTCH-HHHHHHHHHHHCTTSEEEEECC
T ss_pred             eEeeEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC---------------CChHH-HHHHHHHHHHhCCCCEEEEECC
Confidence            45555554 3689999999999999999999999886               24677 89999999987  689999998


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.|+++|.        +-        .++.||+..+++++.+ ++||++.+.+.|++++.
T Consensus       217 ~~~~~----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPI~~dE~~~~~~~~~  275 (388)
T 2nql_A          217 WNQTP----ERALELIAEMQPFDPWFAE--------AP--------VWTEDIAGLEKVSKNT-DVPIAVGEEWRTHWDMR  275 (388)
T ss_dssp             SCSCH----HHHHHHHHHHGGGCCSCEE--------CC--------SCTTCHHHHHHHHTSC-CSCEEECTTCCSHHHHH
T ss_pred             CCCCH----HHHHHHHHHHhhcCCCEEE--------CC--------CChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHH
Confidence            88864    3578999999999999872        11        1235899999999988 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++++.  ||+|++-.+- +.++-+.++.+
T Consensus       276 ~~i~~~~~d~v~ik~~~-GGit~~~~i~~  303 (388)
T 2nql_A          276 ARIERCRIAIVQPEMGH-KGITNFIRIGA  303 (388)
T ss_dssp             HHHTTSCCSEECCCHHH-HCHHHHHHHHH
T ss_pred             HHHHcCCCCEEEecCCC-CCHHHHHHHHH
Confidence            99976  9999998888 88876666654

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.13  E-value=9.5e-11  Score=104.22  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=84.1

Q ss_pred             eEEEEeccCCCCCc--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         117 ITVKHRIGIDDINS--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       117 vsvKiR~g~~~~~~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      ..||+|.||.....  ..++.++++.+++.|++.|++|.++.. ...        ...+++.+++++ .+ ++||+++||
T Consensus        13 ~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~~~-~~~--------~~~~~~~i~~i~-~~-~ipvi~~Gg   81 (241)
T 1qo2_A           13 KVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNA-IEN--------SGENLPVLEKLS-EF-AEHIQIGGG   81 (241)
T ss_dssp             EEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHH-HHC--------CCTTHHHHHHGG-GG-GGGEEEESS
T ss_pred             EEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEeccccc-ccC--------CchhHHHHHHHH-hc-CCcEEEECC
Confidence            57899999865431  124689999999999999999987641 111        125799999999 76 799999999


Q ss_pred             CCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         195 IKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      |++++++.++++. ||+|++|++++.+|+++.++ +.
T Consensus        82 i~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~-~~  117 (241)
T 1qo2_A           82 IRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSL-RE  117 (241)
T ss_dssp             CCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHH-HT
T ss_pred             CCCHHHHHHHHHCCCCEEEECchHhhChHHHHHH-HH
Confidence            9999999999987 99999999999999999988 54

>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B

Probab=99.13  E-value=4.8e-10  Score=106.26  Aligned_cols=147  Identities=10%  Similarity=0.062  Sum_probs=122.0

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-..+...+|+.+.++|+.+.+.||+.|.|++|||               +++...++++++|+++  ++++.++.
T Consensus       133 ~~v~~~~~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDa  197 (378)
T 2qdd_A          133 TPVPINSSISTGTPDQMLGLIAEAAAQGYRTHSAKIGGS---------------DPAQDIARIEAISAGLPDGHRVTFDV  197 (378)
T ss_dssp             CCEEBEEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHSCCTTCEEEEEC
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHHHhhhheeecCCCC---------------ChHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            345666667668999999999999889999999999986               5688889999999987  68899998


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +-+|+.    ++..++++.++ .|+ +|-               +..  + ||+..+++++.+ ++||++++.+.|++++
T Consensus       198 n~~~~~----~~a~~~~~~l~-~~i-~iE---------------qP~--~-d~~~~~~l~~~~-~iPI~~dE~~~~~~~~  252 (378)
T 2qdd_A          198 NRAWTP----AIAVEVLNSVR-ARD-WIE---------------QPC--Q-TLDQCAHVARRV-ANPIMLDECLHEFSDH  252 (378)
T ss_dssp             TTCCCH----HHHHHHHTSCC-CCC-EEE---------------CCS--S-SHHHHHHHHTTC-CSCEEECTTCCSHHHH
T ss_pred             CCCCCH----HHHHHHHHHhC-CCc-EEE---------------cCC--C-CHHHHHHHHHhC-CCCEEECCCcCCHHHH
Confidence            888864    35678898888 888 651               111  1 899999999988 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .++++.  ||.|++-.+-.+.++-+.++.+.
T Consensus       253 ~~~i~~~~~d~v~ik~~~~GGi~~~~~i~~~  283 (378)
T 2qdd_A          253 LAAWSRGACEGVKIKPNRVGGLTRARQIRDF  283 (378)
T ss_dssp             HHHHHHTCCSEEEECHHHHTSHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEecccccCCHHHHHHHHHH
Confidence            999975  99999999999999877766543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.13  E-value=7.4e-10  Score=105.57  Aligned_cols=193  Identities=13%  Similarity=0.138  Sum_probs=122.6

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceeccccc-CC--------chh-------------c------------cc-cCCCCC
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN--------KKH-------------C------------LD-FNAEEH   46 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~--------~~~-------------~------------l~-~~~~~~   46 (311)
                      |+|+..+.+.+.+.|..+++.|||+.++... ..        ...             +            ++ ..+...
T Consensus        77 g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~~~~~~d~~~~~~~i~~~~~~g~  156 (393)
T 2qr6_A           77 ALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQELHAAPLDTELLSERIAQVRDSGE  156 (393)
T ss_dssp             TTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred             CcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhcccccCCHHHHHHHHHHHhhcCC
Confidence            6788888888888887789999885432211 00        000             0            00 012356


Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      |+++.+.+.+..++   ++.+.+.|+|.|.++ +.|..    ..++..-. +++   + +..+++.+++||.+|   |..
T Consensus       157 ~v~~~v~~~~~~e~---a~~~~~agad~i~i~-~~~~~----~~~~~~~~-~~~---~-i~~l~~~~~~pvi~g---gi~  220 (393)
T 2qr6_A          157 IVAVRVSPQNVREI---APIVIKAGADLLVIQ-GTLIS----AEHVNTGG-EAL---N-LKEFIGSLDVPVIAG---GVN  220 (393)
T ss_dssp             CCEEEECTTTHHHH---HHHHHHTTCSEEEEE-CSSCC----SSCCCC---------C-HHHHHHHCSSCEEEE---CCC
T ss_pred             eEEEEeCCccHHHH---HHHHHHCCCCEEEEe-CCccc----cccCCCcc-cHH---H-HHHHHHhcCCCEEEC---CcC
Confidence            88888887665544   344557899999887 34421    01211100 122   2 456666679999996   221


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-------CC--CCeEEEecCCCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-------FP--ELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-------~~--~ipvi~nGgI~s  197 (311)
                      .       .+-++.+.++|+|+|.| ++..    ..+......++..++.+.++++.       +.  ++|||++|||++
T Consensus       221 t-------~e~a~~~~~~Gad~i~v-g~Gg----~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~  288 (393)
T 2qr6_A          221 D-------YTTALHMMRTGAVGIIV-GGGE----NTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIEN  288 (393)
T ss_dssp             S-------HHHHHHHHTTTCSEEEE-SCCS----CCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCS
T ss_pred             C-------HHHHHHHHHcCCCEEEE-CCCc----ccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCC
Confidence            1       35578889999999999 5411    00000011123567888777765       42  299999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .+|+.+++.. ||+||+||+++..+.
T Consensus       289 ~~dv~kalalGA~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          289 SGDVVKAIACGADAVVLGSPLARAEE  314 (393)
T ss_dssp             HHHHHHHHHHTCSEEEECGGGGGSTT
T ss_pred             HHHHHHHHHcCCCEEEECHHHHcCCC
Confidence            9999999987 999999999988875

>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}

Probab=99.09  E-value=1.6e-09  Score=103.53  Aligned_cols=151  Identities=13%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCCh-HHHHHHHHHHhccc--cceeEEE
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKP-LLVSDCIKAMRDSV--EIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~-~~~~~iv~~v~~~~--~~pvsvK  120 (311)
                      ..|+-.++. +.+++++.++|+.+.+.||+.|.|++ ||.        |.    ++ +...++++++|+++  ++++.++
T Consensus       133 ~vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~-spv--------G~----~~~~~~~e~v~avr~a~G~d~~l~vD  199 (401)
T 2hzg_A          133 GKRPYASLLFGDTPQETLERARAARRDGFAAVKFGW-GPI--------GR----GTVAADADQIMAAREGLGPDGDLMVD  199 (401)
T ss_dssp             CBEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEES-TTT--------TS----SCHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ceEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcC-CCC--------CC----CHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence            445554554 67999999999999999999999996 764        32    45 77889999999987  6899999


Q ss_pred             EeccC--CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH-hCCCCeEEEecCCCC
Q psy2386         121 HRIGI--DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK-DFPELEIIINGGIKT  197 (311)
Q Consensus       121 iR~g~--~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~-~~~~ipvi~nGgI~s  197 (311)
                      ..-+|  +.    ++..++++.+++.|+++|-        +.        .++.||+..+++++ .+ ++||++.+.+.|
T Consensus       200 an~~~~~~~----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~~-~iPI~~dE~~~~  258 (401)
T 2hzg_A          200 VGQIFGEDV----EAAAARLPTLDAAGVLWLE--------EP--------FDAGALAAHAALAGRGA-RVRIAGGEAAHN  258 (401)
T ss_dssp             CTTTTTTCH----HHHHTTHHHHHHTTCSEEE--------CC--------SCTTCHHHHHHHHTTCC-SSEEEECTTCSS
T ss_pred             CCCCCCCCH----HHHHHHHHHHHhcCCCEEE--------CC--------CCccCHHHHHHHHhhCC-CCCEEecCCcCC
Confidence            98888  54    3568899999999999872        11        12358999999998 87 799999999999


Q ss_pred             HHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         198 KKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       198 ~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++++.++++.  ||.|++-.+-.+.++-+.++.+
T Consensus       259 ~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~  292 (401)
T 2hzg_A          259 FHMAQHLMDYGRIGFIQIDCGRIGGLGPAKRVAD  292 (401)
T ss_dssp             HHHHHHHHHHSCCSEEEECHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCEEEeCcchhCCHHHHHHHHH
Confidence            9999999976  9999999888888876666544

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.08  E-value=2.4e-09  Score=95.40  Aligned_cols=169  Identities=14%  Similarity=0.114  Sum_probs=115.2

Q ss_pred             CCeEEEecCCCH--HHHHHHHHHHHHcCCCEEEec--cCCCccccccCc--ccCcc--cCChHHHHHHHHHHhcccccee
Q psy2386          46 HPIAFQVGDNEP--KKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGF--FGAIL--MTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        46 ~p~~~Ql~g~~~--~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~--~G~~L--l~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      .++++.|.+.||  +.+.+.++.+++. +|.|+|+  ++||.-.-..-.  .-.+|  -.+.....++++++++.+++||
T Consensus         5 ~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv   83 (248)
T 1geq_A            5 GSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPI   83 (248)
T ss_dssp             TEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCE
Confidence            468999999999  5899999999888 9999999  678754100000  00000  0266777899999999888998


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------cc-------
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------FL-------  158 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------~~-------  158 (311)
                      -+.........  + ...++++.+.++|++.|++|.-..                                ..       
T Consensus        84 ~~~~~~~~~~~--~-~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i  160 (248)
T 1geq_A           84 VLMTYYNPIYR--A-GVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFV  160 (248)
T ss_dssp             EEEECHHHHHH--H-CHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEE
T ss_pred             EEEeccchhhh--c-CHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeE
Confidence            87653210000  0 124788888999999999874110                                00       


Q ss_pred             -----ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         159 -----KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       159 -----~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                           .|++|... ..++..++.++++++.. ++||++.|||++++++.++++. +|+|.+|++++..
T Consensus       161 ~~~~~~G~~g~~~-~~~~~~~~~i~~l~~~~-~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~  226 (248)
T 1geq_A          161 YLVSLYGTTGARE-EIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKI  226 (248)
T ss_dssp             EEECCC--------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             EEEECCccCCCCC-CCChhHHHHHHHHHhhc-CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhh
Confidence                 01111100 01123467899999987 7999999999999999999876 9999999999764

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.07  E-value=1.9e-09  Score=105.70  Aligned_cols=132  Identities=15%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHH
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      ..+.+.++.+.++|+|.|.+|++.          |     +++...++++++++.+ ++||.++--.          ..+
T Consensus       236 ~~~~~~a~~l~~aGvd~v~i~~~~----------G-----~~~~~~e~i~~i~~~~p~~pvi~g~~~----------t~e  290 (494)
T 1vrd_A          236 PETMERVEKLVKAGVDVIVIDTAH----------G-----HSRRVIETLEMIKADYPDLPVVAGNVA----------TPE  290 (494)
T ss_dssp             TTHHHHHHHHHHTTCSEEEECCSC----------C-----SSHHHHHHHHHHHHHCTTSCEEEEEEC----------SHH
T ss_pred             HhHHHHHHHHHHhCCCEEEEEecC----------C-----chHHHHHHHHHHHHHCCCceEEeCCcC----------CHH
Confidence            345567778888999999998641          1     3466778899999988 7999885221          135


Q ss_pred             HHHHHHHcCCCEEEEecCc------cccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         137 FVGTVSSAGCRTFIVHARN------AFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt------~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      .++.+.++|+|+|.+.+..      ....+.        +...+..+..+++   .. ++|||+.|||.+++|+.++++.
T Consensus       291 ~a~~l~~~G~d~I~v~~~~G~~~~~~~~~~~--------g~p~~~~l~~v~~~~~~~-~ipvia~GGI~~~~di~kala~  361 (494)
T 1vrd_A          291 GTEALIKAGADAVKVGVGPGSICTTRVVAGV--------GVPQLTAVMECSEVARKY-DVPIIADGGIRYSGDIVKALAA  361 (494)
T ss_dssp             HHHHHHHTTCSEEEECSSCSTTCHHHHHHCC--------CCCHHHHHHHHHHHHHTT-TCCEEEESCCCSHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEEcCCCCccccccccCCC--------CccHHHHHHHHHHHHhhc-CCCEEEECCcCCHHHHHHHHHc
Confidence            5688999999999994321      111121        1124555555444   35 7999999999999999999987


Q ss_pred             -cCEEEEehhhhhCCcc
Q psy2386         208 -IDGVMLGREAYKNPFL  223 (311)
Q Consensus       208 -adgVmigRa~l~~P~i  223 (311)
                       ||+|++||+++..|..
T Consensus       362 GAd~V~iGr~~l~~~e~  378 (494)
T 1vrd_A          362 GAESVMVGSIFAGTEEA  378 (494)
T ss_dssp             TCSEEEESHHHHTBTTS
T ss_pred             CCCEEEECHHHhcCCcC
Confidence             9999999999987765

>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1

Probab=99.07  E-value=4e-09  Score=99.98  Aligned_cols=146  Identities=11%  Similarity=0.047  Sum_probs=121.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      .++++++++|+.+.+.||+.|.|++||+.       +|  .+.+++...++++++|+++  ++++.|+..-+|+.    +
T Consensus       148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~-------~~--~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~----~  214 (382)
T 1rvk_A          148 ATPEDYGRFAETLVKRGYKGIKLHTWMPP-------VS--WAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSR----T  214 (382)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCTT-------ST--TCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCH----H
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEcCCcCc-------cc--cccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----H
Confidence            68999999999998899999999999964       22  4468999999999999987  68999999888864    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC-HHHHHHHHhh--cC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEIDLHLNY--ID  209 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s-~~da~~~l~~--ad  209 (311)
                      +..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.| ++++.++++.  ||
T Consensus       215 ~a~~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~~i~~~~~d  277 (382)
T 1rvk_A          215 DALALGRGLEKLGFDWIE--------EP--------MDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACD  277 (382)
T ss_dssp             HHHHHHHHHHTTTCSEEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHhcCCCEEe--------CC--------CChhhHHHHHHHHhhC-CCCEEEeCCccCcHHHHHHHHHcCCCC
Confidence            578999999999999872        11        1235899999999998 799999999999 9999999976  99


Q ss_pred             EEEEehhhhhCCcchHHhHhh
Q psy2386         210 GVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~~  230 (311)
                      .|++--.-.+...-+.++.+.
T Consensus       278 ~v~ik~~~~GGit~~~~i~~~  298 (382)
T 1rvk_A          278 ILRTGVNDVGGITPALKTMHL  298 (382)
T ss_dssp             EEEECHHHHTSHHHHHHHHHH
T ss_pred             EEeeCchhcCCHHHHHHHHHH
Confidence            999988888777766665543

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.06  E-value=1.1e-09  Score=107.89  Aligned_cols=138  Identities=19%  Similarity=0.243  Sum_probs=97.1

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+.++ ...+.+.+ ++.+.++|+|.|.||..+|.               +..+.++++++++.. ++||.++--.   
T Consensus       247 V~aavg-~~~d~~er-a~aLveaGvd~I~Id~a~g~---------------~~~v~~~i~~i~~~~~~~~vi~g~v~---  306 (511)
T 3usb_A          247 VGAAVG-VTADAMTR-IDALVKASVDAIVLDTAHGH---------------SQGVIDKVKEVRAKYPSLNIIAGNVA---  306 (511)
T ss_dssp             CEEEEC-SSTTHHHH-HHHHHHTTCSEEEEECSCTT---------------SHHHHHHHHHHHHHCTTSEEEEEEEC---
T ss_pred             eeeeee-eccchHHH-HHHHHhhccceEEecccccc---------------hhhhhhHHHHHHHhCCCceEEeeeec---
Confidence            445553 33444444 44566789999999988763               355778888998876 4788876321   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s  197 (311)
                             ..+.++.+.++|+|+|.+-      ..+....|..        ..++..+.+++   +.+ ++|||+.|||.+
T Consensus       307 -------t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g--------~p~~~~l~~v~~~~~~~-~iPVIa~GGI~~  370 (511)
T 3usb_A          307 -------TAEATKALIEAGANVVKVGIGPGSICTTRVVAGVG--------VPQLTAVYDCATEARKH-GIPVIADGGIKY  370 (511)
T ss_dssp             -------SHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCC--------CCHHHHHHHHHHHHHTT-TCCEEEESCCCS
T ss_pred             -------cHHHHHHHHHhCCCEEEECCCCccccccccccCCC--------CCcHHHHHHHHHHHHhC-CCcEEEeCCCCC
Confidence                   2467899999999999982      2222122321        24666666654   444 699999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      ++|+.++++. ||+||+||+++.-.
T Consensus       371 ~~di~kala~GA~~V~vGs~~~~~~  395 (511)
T 3usb_A          371 SGDMVKALAAGAHVVMLGSMFAGVA  395 (511)
T ss_dssp             HHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred             HHHHHHHHHhCchhheecHHHhcCc
Confidence            9999999987 99999999985544

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=99.05  E-value=4.4e-09  Score=100.10  Aligned_cols=135  Identities=17%  Similarity=0.195  Sum_probs=95.0

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .+.++.+.++|+|.|.|+.+.               -+++.+.++++.+++..++||.++.-.          ..+.++.
T Consensus       146 ~e~~~~lveaGvdvIvldta~---------------G~~~~~~e~I~~ik~~~~i~Vi~g~V~----------t~e~A~~  200 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAH---------------GHSLNIIRTLKEIKSKMNIDVIVGNVV----------TEEATKE  200 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSC---------------CSBHHHHHHHHHHHTTCCCEEEEEEEC----------SHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCC---------------CCcccHHHHHHHHHhcCCCeEEEeecC----------CHHHHHH
Confidence            345666777899999987432               135667788899998888999886221          2567899


Q ss_pred             HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      ++++|+|+|.+.. .....+ ........+..++..+.++++.+  .++|||+.|||.+++|+.++++. ||+||+|+++
T Consensus       201 a~~aGAD~I~vG~-g~Gs~~-~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f  278 (400)
T 3ffs_A          201 LIENGADGIKVGI-GPGSIC-TTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGSIL  278 (400)
T ss_dssp             HHHTTCSEEEECC-----------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGG
T ss_pred             HHHcCCCEEEEeC-CCCcCc-ccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            9999999999931 110000 00000011224678888887642  27999999999999999999987 9999999999


Q ss_pred             hhCCc
Q psy2386         218 YKNPF  222 (311)
Q Consensus       218 l~~P~  222 (311)
                      +.-+.
T Consensus       279 ~~t~E  283 (400)
T 3ffs_A          279 AGTEE  283 (400)
T ss_dssp             TTBTT
T ss_pred             hcCCC
Confidence            88664

>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1

Probab=99.04  E-value=4.9e-09  Score=98.96  Aligned_cols=147  Identities=13%  Similarity=0.168  Sum_probs=119.8

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~  123 (311)
                      |+-.-+.+.+|+.++++|+.+.+ .||+.|.|++||+               +++...++++++|+++  ++++.++..-
T Consensus       133 ~~~~~~~~~~~e~~~~~a~~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~  197 (370)
T 1nu5_A          133 PIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGAR---------------TPAQDLEHIRSIVKAVGDRASVRVDVNQ  197 (370)
T ss_dssp             EBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGCEEEEECTT
T ss_pred             EeeEEecCCCHHHHHHHHHHHHHhCCccEEEEecCCC---------------ChHHHHHHHHHHHHhcCCCCEEEEECCC
Confidence            44445566789999999998888 9999999999885               3566778899998877  4788888887


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+.    ++..++++.+++.|+++|.        +-        .++.||+..+++++.+ ++||++.+.+.+++++.+
T Consensus       198 ~~~~----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~  256 (370)
T 1nu5_A          198 GWDE----QTASIWIPRLEEAGVELVE--------QP--------VPRANFGALRRLTEQN-GVAILADESLSSLSSAFE  256 (370)
T ss_dssp             CCCH----HHHHHHHHHHHHHTCCEEE--------CC--------SCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHH
T ss_pred             CCCH----HHHHHHHHHHHhcCcceEe--------CC--------CCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHHHH
Confidence            7764    3578999999999999873        11        1335899999999998 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++.  ||.|++--+-.+..+-..++.+
T Consensus       257 ~i~~~~~d~v~ik~~~~GGit~~~~i~~  284 (370)
T 1nu5_A          257 LARDHAVDAFSLKLCNMGGIANTLKVAA  284 (370)
T ss_dssp             HHHTTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred             HHHhCCCCEEEEchhhcCCHHHHHHHHH
Confidence            9976  9999998888777776655544

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=99.02  E-value=2.5e-09  Score=100.78  Aligned_cols=129  Identities=15%  Similarity=0.201  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFV  138 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~  138 (311)
                      +.+.++.+.++|+|.|.||...          |     +++.+.+.++.+++.. ++||.+..-.          ..+.+
T Consensus       109 ~~~~~~~lieaGvd~I~idta~----------G-----~~~~~~~~I~~ik~~~p~v~Vi~G~v~----------t~e~A  163 (366)
T 4fo4_A          109 NEERVKALVEAGVDVLLIDSSH----------G-----HSEGVLQRIRETRAAYPHLEIIGGNVA----------TAEGA  163 (366)
T ss_dssp             CHHHHHHHHHTTCSEEEEECSC----------T-----TSHHHHHHHHHHHHHCTTCEEEEEEEC----------SHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCC----------C-----CCHHHHHHHHHHHHhcCCCceEeeeeC----------CHHHH
Confidence            4455667778899999998421          1     3466777888888876 7888774211          24678


Q ss_pred             HHHHHcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         139 GTVSSAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       139 ~~l~~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      +.++++|+|+|.+.      ..++...+        .+...+..+.++++   .. ++|||+.|||.++.|+.+++.. |
T Consensus       164 ~~a~~aGAD~I~vG~gpGs~~~tr~~~g--------~g~p~~~~l~~v~~~~~~~-~iPVIA~GGI~~~~di~kala~GA  234 (366)
T 4fo4_A          164 RALIEAGVSAVKVGIGPGSICTTRIVTG--------VGVPQITAIADAAGVANEY-GIPVIADGGIRFSGDISKAIAAGA  234 (366)
T ss_dssp             HHHHHHTCSEEEECSSCSTTBCHHHHHC--------CCCCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHHHHHTTC
T ss_pred             HHHHHcCCCEEEEecCCCCCCCcccccC--------cccchHHHHHHHHHHHhhc-CCeEEEeCCCCCHHHHHHHHHcCC
Confidence            88999999999992      11110111        12246677777665   44 7999999999999999999987 9


Q ss_pred             CEEEEehhhhhCCc
Q psy2386         209 DGVMLGREAYKNPF  222 (311)
Q Consensus       209 dgVmigRa~l~~P~  222 (311)
                      |+||+|+.++.-+.
T Consensus       235 d~V~vGs~f~~t~E  248 (366)
T 4fo4_A          235 SCVMVGSMFAGTEE  248 (366)
T ss_dssp             SEEEESTTTTTBTT
T ss_pred             CEEEEChHhhcCCC
Confidence            99999999987654

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.02  E-value=3.8e-09  Score=91.39  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=99.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+++.|.+.+++++.+.++.+.+.|++.|+++++||..                  .+.++.+|+.++..+.+...  
T Consensus         9 ~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~~~------------------~~~i~~ir~~~~~~~~ig~~--   68 (205)
T 1wa3_A            9 KHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDA------------------DTVIKELSFLKEKGAIIGAG--   68 (205)
T ss_dssp             HHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTH------------------HHHHHHTHHHHHTTCEEEEE--
T ss_pred             hCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCChhH------------------HHHHHHHHHHCCCCcEEEec--
Confidence            4689999999999999999999999999999999988732                  24566666654211222221  


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc-------------ccc-CCCC-------------cCCCCCcCcHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-------------LKK-LNPK-------------QNRKIPILKYNFV  177 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-------------~~G-~~g~-------------~~~~~~~~~~~~i  177 (311)
                      ...  +    .+-++.+.++|+|+| +++-...             ..| .++.             ......+...+.+
T Consensus        69 ~v~--~----~~~~~~a~~~Gad~i-v~~~~~~~~~~~~~~~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~~~g~~~~  141 (205)
T 1wa3_A           69 TVT--S----VEQCRKAVESGAEFI-VSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFV  141 (205)
T ss_dssp             SCC--S----HHHHHHHHHHTCSEE-ECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred             ccC--C----HHHHHHHHHcCCCEE-EcCCCCHHHHHHHHHcCCcEECCcCCHHHHHHHHHcCCCEEEEcCccccCHHHH
Confidence            111  1    233566677888888 6644320             000 0000             0000001245778


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +++++.+|++||++.|||. ++++.++++. +|+|.+|++++.
T Consensus       142 ~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~  183 (205)
T 1wa3_A          142 KAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK  183 (205)
T ss_dssp             HHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC
T ss_pred             HHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC
Confidence            8888877679999999996 7899999987 999999999987

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.01  E-value=9.8e-09  Score=94.04  Aligned_cols=162  Identities=19%  Similarity=0.237  Sum_probs=102.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      ..|+++.+.+      .+.|+.+.+.|+++|+++.++|......  .|+.+.++++.+    +.+++.+++|+.++.+.+
T Consensus        21 ~~~~i~~~~~------~~~a~~~~~~Ga~~i~~~e~v~~~~~~~--~G~~~~~~~~~i----~~i~~~~~~Pvi~~~~~~   88 (297)
T 2zbt_A           21 KGGVIMDVTT------PEQAVIAEEAGAVAVMALERVPADIRAQ--GGVARMSDPKII----KEIMAAVSIPVMAKVRIG   88 (297)
T ss_dssp             TTEEEEEESS------HHHHHHHHHHTCSEEEECSSCHHHHHHT--TCCCCCCCHHHH----HHHHTTCSSCEEEEEETT
T ss_pred             hCCeeeeech------HHHHHHHHHCCCcEEEeccccchHHHhh--cCCccCCCHHHH----HHHHHhcCCCeEEEeccC
Confidence            4688887765      4566667788999999988776543222  366677777664    456667789999988765


Q ss_pred             CCC---------------------CC------c----------HHHHHHHHHHHHHcCCCEEEEecCcc-----------
Q psy2386         125 IDD---------------------IN------S----------YDFVRDFVGTVSSAGCRTFIVHARNA-----------  156 (311)
Q Consensus       125 ~~~---------------------~~------~----------~~~~~e~~~~l~~~G~~~itvh~Rt~-----------  156 (311)
                      +.+                     .+      .          ... .+-+..+.++|+|+|++||-..           
T Consensus        89 ~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~-~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~  167 (297)
T 2zbt_A           89 HFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARN-LGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHA  167 (297)
T ss_dssp             CHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESS-HHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCC-HHHHHHHHHcCCCEEEEcccccCcchHHHHhhH
Confidence            200                     00      0          000 1112233445555555553100           


Q ss_pred             --------ccccCCCCcC---CCCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         157 --------FLKKLNPKQN---RKIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       157 --------~~~G~~g~~~---~~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                              ...|+++...   ....+.+++.++++++.. ++||+  +.|||.|++|+.++++. ||+|++|++++..
T Consensus       168 ~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~-~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~  244 (297)
T 2zbt_A          168 RTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHG-RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKS  244 (297)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHS-SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred             HHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhc-CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCC
Confidence                    0011211100   001235788999999987 79998  99999999999999987 9999999999953

>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A

Probab=99.00  E-value=6.5e-09  Score=97.96  Aligned_cols=149  Identities=11%  Similarity=0.097  Sum_probs=121.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-.++++.+|+++.+.|+.+.+.||+.|.|++||+               +++...++++++|+++  ++++.++..
T Consensus       129 ~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~d~~~v~avr~a~g~~~~l~vDan  193 (366)
T 1tkk_A          129 TLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDAN  193 (366)
T ss_dssp             EEEBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECT
T ss_pred             ceeeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            34556778888999999999988888999999998872               4677788999999987  688999988


Q ss_pred             ccCCCCCcHHHHHHHHHHHHH--cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~--~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      -+|+.    ++..++++.+++  .|+++|-        +-        .++.||+..+++++.. ++||.+.+.+.++++
T Consensus       194 ~~~~~----~~a~~~~~~l~~~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~  252 (366)
T 1tkk_A          194 QGWRP----KEAVTAIRKMEDAGLGIELVE--------QP--------VHKDDLAGLKKVTDAT-DTPIMADESVFTPRQ  252 (366)
T ss_dssp             TCSCH----HHHHHHHHHHHHTTCCEEEEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEECTTCCSHHH
T ss_pred             CCCCH----HHHHHHHHHHhhcCCCceEEE--------CC--------CCcccHHHHHHHHhhC-CCCEEEcCCCCCHHH
Confidence            88864    357899999999  8887772        11        1345899999999998 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.++++.  ||.|++--.-.+...-..++.+
T Consensus       253 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~  283 (366)
T 1tkk_A          253 AFEVLQTRSADLINIKLMKAGGISGAEKINA  283 (366)
T ss_dssp             HHHHHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEeehhhhcCHHHHHHHHH
Confidence            9999975  9999998888777765555543

>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}

Probab=98.99  E-value=6.6e-09  Score=98.13  Aligned_cols=146  Identities=11%  Similarity=0.064  Sum_probs=121.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-..+.+.+|++++++|+.+.+.||+.|.|++|+                +++...++++++|+++  ++++.++.
T Consensus       134 ~~vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~~~e~v~avr~a~g~~~~l~vDa  197 (371)
T 2ps2_A          134 TRLPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG----------------EPVTDAKRITAALANQQPDEFFIVDA  197 (371)
T ss_dssp             SCEEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS----------------CHHHHHHHHHHHTTTCCTTCEEEEEC
T ss_pred             CceEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC----------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            35567777888899999999999999999999999774                4788889999999988  68899988


Q ss_pred             eccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      .-+|+.    ++..++++.+ ++.|+ +|.               +.   ..||+..+++++.+ ++||++.+.+.++++
T Consensus       198 n~~~~~----~~a~~~~~~l~~~~~i-~iE---------------~P---~~~~~~~~~l~~~~-~iPI~~dE~~~~~~~  253 (371)
T 2ps2_A          198 NGKLSV----ETALRLLRLLPHGLDF-ALE---------------AP---CATWRECISLRRKT-DIPIIYDELATNEMS  253 (371)
T ss_dssp             TTBCCH----HHHHHHHHHSCTTCCC-EEE---------------CC---BSSHHHHHHHHTTC-CSCEEESTTCCSHHH
T ss_pred             CCCcCH----HHHHHHHHHHHhhcCC-cCc---------------CC---cCCHHHHHHHHhhC-CCCEEeCCCcCCHHH
Confidence            888864    3578999999 99998 662               10   12899999999988 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.++++.  ||.|++--+-.+...-..++.+
T Consensus       254 ~~~~i~~~~~d~v~ik~~~~GGit~~~~i~~  284 (371)
T 2ps2_A          254 IVKILADDAAEGIDLKISKAGGLTRGRRQRD  284 (371)
T ss_dssp             HHHHHHHTCCSEEEEEHHHHTSHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEechhhcCCHHHHHHHHH
Confidence            9999976  9999999888888776655543

>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*

Probab=98.98  E-value=6.3e-09  Score=99.01  Aligned_cols=148  Identities=16%  Similarity=0.139  Sum_probs=123.7

Q ss_pred             CCeEEEe-c-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          46 HPIAFQV-G-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        46 ~p~~~Ql-~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      .|+-..+ . +.+|+++++.++.+.+.||+.|.|++||                +++.-.++++++|+++  ++++.|+.
T Consensus       139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~----------------~~~~d~~~v~avR~a~g~d~~l~vDa  202 (389)
T 3ozy_A          139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR----------------APRKDAANLRAMRQRVGADVEILVDA  202 (389)
T ss_dssp             EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC----------------CHHHHHHHHHHHHHHcCCCceEEEEC
Confidence            5777777 5 7899999999999988999999999987                4677888999999987  68999999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHH-HhCCCCeEEEecCCCCHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK-KDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~-~~~~~ipvi~nGgI~s~~d  200 (311)
                      .-+|+..    +..++++.+++.|+++|.        +        ..++.||+..++++ +.+ ++||++.+.+.|+++
T Consensus       203 n~~~~~~----~A~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~~-~iPIa~dE~i~~~~~  261 (389)
T 3ozy_A          203 NQSLGRH----DALAMLRILDEAGCYWFE--------E--------PLSIDDIEGHRILRAQGT-PVRIATGENLYTRNA  261 (389)
T ss_dssp             TTCCCHH----HHHHHHHHHHHTTCSEEE--------S--------CSCTTCHHHHHHHHTTCC-SSEEEECTTCCHHHH
T ss_pred             CCCcCHH----HHHHHHHHHHhcCCCEEE--------C--------CCCcccHHHHHHHHhcCC-CCCEEeCCCCCCHHH
Confidence            8888743    568899999999999983        1        11235899999999 887 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         201 IDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      +.++++.  ||.|++--+-.+...-..++.+.
T Consensus       262 ~~~~i~~~~~d~v~ik~~~~GGit~~~~ia~~  293 (389)
T 3ozy_A          262 FNDYIRNDAIDVLQADASRAGGITEALAISAS  293 (389)
T ss_dssp             HHHHHHTTCCSEECCCTTTSSCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCEEEeCccccCCHHHHHHHHHH
Confidence            9999975  99999988887777756565543

>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}

Probab=98.97  E-value=6.8e-09  Score=98.82  Aligned_cols=144  Identities=10%  Similarity=0.068  Sum_probs=118.8

Q ss_pred             Eec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCC
Q psy2386          51 QVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDD  127 (311)
Q Consensus        51 Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~  127 (311)
                      .+. +.+|++|+++|+.+.+.||+.|.|+.|+.               .++...++++++|+++  ++++.|+..-+|+.
T Consensus       143 ~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~g~~---------------~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~  207 (391)
T 2qgy_A          143 WSDLKKDTNDYLRQIEKFYGKKYGGIKIYPMLD---------------SLSISIQFVEKVREIVGDELPLMLDLAVPEDL  207 (391)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHTTCSCEEECCCCS---------------SHHHHHHHHHHHHHHHCSSSCEEEECCCCSCH
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------hHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCH
Confidence            344 67999999999999999999999997731               1688889999999987  68999999888864


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                          ++..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.|++++.++++.
T Consensus       208 ----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~  266 (391)
T 2qgy_A          208 ----DQTKSFLKEVSSFNPYWIE--------EP--------VDGENISLLTEIKNTF-NMKVVTGEKQSGLVHFRELISR  266 (391)
T ss_dssp             ----HHHHHHHHHHGGGCCSEEE--------CS--------SCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhcCCCeEe--------CC--------CChhhHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHHHHc
Confidence                3578999999999999873        11        1235899999999998 7999999999999999999975


Q ss_pred             --cCEEEEehhhhhCCcchHHhHhh
Q psy2386         208 --IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       208 --adgVmigRa~l~~P~i~~~~~~~  230 (311)
                        ||.|++-.+-.+..+-+.++.+.
T Consensus       267 ~~~d~v~ik~~~~GGit~~~~i~~~  291 (391)
T 2qgy_A          267 NAADIFNPDISGMGGLIDIIEISNE  291 (391)
T ss_dssp             TCCSEECCBTTTSSCHHHHHHHHHH
T ss_pred             CCCCEEEECcchhCCHHHHHHHHHH
Confidence              99999988887777766665543

>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*

Probab=98.92  E-value=9.6e-09  Score=98.28  Aligned_cols=153  Identities=15%  Similarity=0.143  Sum_probs=119.2

Q ss_pred             CCCeEEE-ec-C-C-------CHHHHHHHHHHHHHcCCCEEEecc------CC----CccccccCcccCccc-CChHHHH
Q psy2386          45 EHPIAFQ-VG-D-N-------EPKKLAKSAKIIQKWGYDEINLNC------GC----PSNRVQNGFFGAILM-TKPLLVS  103 (311)
Q Consensus        45 ~~p~~~Q-l~-g-~-------~~~~~~~aa~~~~~~g~d~IdiN~------gC----P~~~v~~~~~G~~Ll-~~~~~~~  103 (311)
                      ..|+-.+ +. | .       ++++|+++|+.+.+.||+.|.|+.      |+    |..+   ..+|+... ++++...
T Consensus       129 ~vp~y~~~i~~g~~~~~~~~~~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~---~~~GG~~~~~~~~~~~  205 (410)
T 2gl5_A          129 KLRTYASQLQFGWGDKNHILVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRN---RNYSGLLLADQLKMGE  205 (410)
T ss_dssp             SEEEEEECGGGCCTTCCSCCCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCC---GGGGSCCCHHHHHHHH
T ss_pred             ceeEeEecccCCccccccccCCHHHHHHHHHHHHHcCCCEEEEeccccCCccccccccccc---ccccCccchhHHHHHH
Confidence            3456555 65 4 4       899999999999999999999996      76    3332   24666553 5778889


Q ss_pred             HHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         104 DCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       104 ~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      ++++++|+++  ++++.++..-+|+.    ++..++++.+++.|+++|.        +-        .++.||+..++++
T Consensus       206 e~v~avR~a~G~d~~l~vDan~~~~~----~~ai~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~  265 (410)
T 2gl5_A          206 ARIAAMREAMGDDADIIVEIHSLLGT----NSAIQFAKAIEKYRIFLYE--------EP--------IHPLNSDNMQKVS  265 (410)
T ss_dssp             HHHHHHHHHHCSSSEEEEECTTCSCH----HHHHHHHHHHGGGCEEEEE--------CS--------SCSSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCCH----HHHHHHHHHHHhcCCCeEE--------CC--------CChhhHHHHHHHH
Confidence            9999999987  58888888777763    3578999999999988763        11        1235899999999


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCC
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P  221 (311)
                      +.+ ++||++.+.+.|++++.++++.  ||.|++--.-.+..
T Consensus       266 ~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi  306 (410)
T 2gl5_A          266 RST-TIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGI  306 (410)
T ss_dssp             HHC-SSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHH
T ss_pred             hhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCH
Confidence            998 7999999999999999999975  99999854444333

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=98.90  E-value=1.7e-08  Score=90.73  Aligned_cols=162  Identities=14%  Similarity=0.188  Sum_probs=106.2

Q ss_pred             CCCeEEEecCCCH--HHHHHHHHHHHHcCCCEEEeccCCCccccc----c------CcccCcccCChHHHHHHHHHHhcc
Q psy2386          45 EHPIAFQVGDNEP--KKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----N------GFFGAILMTKPLLVSDCIKAMRDS  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~~--~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~------~~~G~~Ll~~~~~~~~iv~~v~~~  112 (311)
                      +..+++-|...+|  +.+.+.++.+.+.|+|.|+|+.-|+-|..-    .      -..|    -+++...++++++++.
T Consensus        17 ~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g----~~~~~~~~~i~~ir~~   92 (262)
T 1rd5_A           17 KTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASG----TTMDAVLEMLREVTPE   92 (262)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTT----CCHHHHHHHHHHHGGG
T ss_pred             CceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence            4457777777666  889999999999999999998766533210    0      0011    2678889999999998


Q ss_pred             ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc-----c----
Q psy2386         113 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA-----F----  157 (311)
Q Consensus       113 ~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~-----~----  157 (311)
                      +++||.+-.+.....       ...++.+.++|++.+++|.                          .+.     .    
T Consensus        93 ~~~Pv~~m~~~~~~~-------~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~  165 (262)
T 1rd5_A           93 LSCPVVLLSYYKPIM-------FRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKA  165 (262)
T ss_dssp             CSSCEEEECCSHHHH-------SCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEecCcHHH-------HHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhc
Confidence            899987743221000       0001124455555555331                          110     0    


Q ss_pred             ---------cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         158 ---------LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       158 ---------~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                               ..|++|.... ..+...+.++++++.. ++||++.|||.|++++.++++. ||+|.+|++++.
T Consensus       166 ~~g~v~~~s~~G~tG~~~~-~~~~~~~~i~~v~~~~-~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~  235 (262)
T 1rd5_A          166 SEGFVYLVSVNGVTGPRAN-VNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR  235 (262)
T ss_dssp             CCSCEEEECSSCCBCTTSC-BCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CCCeEEEecCCCCCCCCcC-CCchHHHHHHHHHhhc-CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence                     1122332111 1223457899999987 8999999999999999999986 999999999854

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=98.90  E-value=5.8e-08  Score=88.88  Aligned_cols=141  Identities=19%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             HHHHHHHcCCCEEEe--ccCCCccccccCcccC-cccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINL--NCGCPSNRVQNGFFGA-ILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        63 aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~-~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      .|+..++.|++.|-+  |..|+...     +|+ .-+.+++.    ++++++.+++||.+|.|.+.         .+.++
T Consensus        33 ~A~~ye~~GA~~lsvLe~~~~Di~~-----~~g~~R~~~~~~----i~~i~~~v~iPvl~k~~i~~---------ide~q   94 (297)
T 4adt_A           33 QAKIAEKAGAIGVMILENIPSELRN-----TDGVARSVDPLK----IEEIRKCISINVLAKVRIGH---------FVEAQ   94 (297)
T ss_dssp             HHHHHHHHTCSEEEECCCCC----------CCCCCCCCCHHH----HHHHHTTCCSEEEEEEETTC---------HHHHH
T ss_pred             HHHHHHHcCCCEEEEecCCCCcchh-----cCCcccCCCHHH----HHHHHHhcCCCEEEeccCCc---------HHHHH
Confidence            467778889998755  45565543     333 45566666    45567778999999988753         24456


Q ss_pred             HHHHcCCCEEEEecC-cc--------c-----------------------------cccC--CCC---------------
Q psy2386         140 TVSSAGCRTFIVHAR-NA--------F-----------------------------LKKL--NPK---------------  164 (311)
Q Consensus       140 ~l~~~G~~~itvh~R-t~--------~-----------------------------~~G~--~g~---------------  164 (311)
                      .++++|+|.|..... +.        .                             .+|.  +|.               
T Consensus        95 il~aaGAD~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~~~~~~ei  174 (297)
T 4adt_A           95 ILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEI  174 (297)
T ss_dssp             HHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHHHHhhhhh
Confidence            666777777731110 00        0                             0010  110               


Q ss_pred             --------cCC----CCCcCcHHHHHHHHHhCCCCeEE--EecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         165 --------QNR----KIPILKYNFVYNLKKDFPELEII--INGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       165 --------~~~----~~~~~~~~~i~~i~~~~~~ipvi--~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                              .+.    .....+++.++++++.+ ++||+  +.|||.|++|+.++++. ||+|++|++++..+.
T Consensus       175 r~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~-~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~d  246 (297)
T 4adt_A          175 KYLCSLDESEVYNFAKKLRAPIDLILLTRKLK-RLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESEN  246 (297)
T ss_dssp             HHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHT-SCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSC
T ss_pred             hhhccccccccccccccCCCCHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCC
Confidence                    000    00135789999999987 68886  99999999999999987 999999999997544

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=98.86  E-value=1.7e-07  Score=83.31  Aligned_cols=145  Identities=10%  Similarity=0.196  Sum_probs=106.8

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHH-c-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQK-W-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~-~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .-.+..+-.| .+.++-...|+++.+ + |-++|-|-.-       .+  --.|+.|+....+..+.+.+. ++.|..-+
T Consensus        73 ~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~-------~d--~~~llpD~~~tv~aa~~L~~~-Gf~Vlpy~  142 (265)
T 1wv2_A           73 RYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVL-------AD--QKTLFPNVVETLKAAEQLVKD-GFDVMVYT  142 (265)
T ss_dssp             TSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCB-------SC--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEee-------cC--ccccCcCHHHHHHHHHHHHHC-CCEEEEEe
Confidence            4456666665 478999999999988 4 4577777521       11  124778888877777777654 55443222


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      -   ++       ..+++++++.|++.|..+|..-   | +|     .+..|+++|+.+++.. ++|||+.|||.|++|+
T Consensus       143 ~---dd-------~~~akrl~~~G~~aVmPlg~pI---G-sG-----~Gi~~~~lI~~I~e~~-~vPVI~eGGI~TPsDA  202 (265)
T 1wv2_A          143 S---DD-------PIIARQLAEIGCIAVMPLAGLI---G-SG-----LGICNPYNLRIILEEA-KVPVLVDAGVGTASDA  202 (265)
T ss_dssp             C---SC-------HHHHHHHHHSCCSEEEECSSST---T-CC-----CCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHH
T ss_pred             C---CC-------HHHHHHHHHhCCCEEEeCCccC---C-CC-----CCcCCHHHHHHHHhcC-CCCEEEeCCCCCHHHH
Confidence            2   11       4789999999999998887631   1 01     1235899999999986 8999999999999999


Q ss_pred             HHHHhh-cCEEEEehhhhh
Q psy2386         202 DLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~  219 (311)
                      .++++. ||||++|+++..
T Consensus       203 a~AmeLGAdgVlVgSAI~~  221 (265)
T 1wv2_A          203 AIAMELGCEAVLMNTAIAH  221 (265)
T ss_dssp             HHHHHHTCSEEEESHHHHT
T ss_pred             HHHHHcCCCEEEEChHHhC
Confidence            999987 999999999854

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=98.85  E-value=4.7e-09  Score=93.57  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.++++.++++|++.|+++..+....+         .+.+++.++++++.+ ++||+++|+|.+++++.++++. ||+|
T Consensus        31 d~~~~a~~~~~~Gad~i~v~d~~~~~~~---------~~~~~~~i~~i~~~~-~ipvi~~ggI~~~~~~~~~~~~Gad~V  100 (253)
T 1thf_D           31 DPVELGKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKV  100 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHcCCCEEEEECCchhhcC---------CcccHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcCCCEE
Confidence            3678999999999999999977642111         124788999999987 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.+|+.+.++.+.+
T Consensus       101 ~lg~~~l~~p~~~~~~~~~~  120 (253)
T 1thf_D          101 SINTAAVENPSLITQIAQTF  120 (253)
T ss_dssp             EESHHHHHCTHHHHHHHHHH
T ss_pred             EEChHHHhChHHHHHHHHHc
Confidence            99999999999888876653

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=98.84  E-value=4.7e-08  Score=84.90  Aligned_cols=150  Identities=15%  Similarity=0.296  Sum_probs=92.4

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc--c--ccCcccCccc------CChHHHHHHHHH-----
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR--V--QNGFFGAILM------TKPLLVSDCIKA-----  108 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~--v--~~~~~G~~Ll------~~~~~~~~iv~~-----  108 (311)
                      .+.|+++.|.+.|++++.+.++.+.+.|++.|++...+|...  +  ....++..++      .+++.+...++.     
T Consensus         5 ~~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V   84 (212)
T 2v82_A            5 TKLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLI   84 (212)
T ss_dssp             SSSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEE
Confidence            368999999999999999999999999999999998776421  0  0111111111      122222211110     


Q ss_pred             -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386         109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                                 .++..+.++.+    |.   .+   ..+ +....+.|+|+|.+++..               +..++.+
T Consensus        85 ~~~~~~~~~~~~~~~~g~~~~~----g~---~t---~~e-~~~a~~~G~d~v~v~~t~---------------~~g~~~~  138 (212)
T 2v82_A           85 VTPNIHSEVIRRAVGYGMTVCP----GC---AT---ATE-AFTALEAGAQALKIFPSS---------------AFGPQYI  138 (212)
T ss_dssp             ECSSCCHHHHHHHHHTTCEEEC----EE---CS---HHH-HHHHHHTTCSEEEETTHH---------------HHCHHHH
T ss_pred             EeCCCCHHHHHHHHHcCCCEEe----ec---CC---HHH-HHHHHHCCCCEEEEecCC---------------CCCHHHH
Confidence                       00001111111    10   00   112 223345566665553211               1357889


Q ss_pred             HHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         178 YNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       178 ~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      +++++.++ ++||++.|||. ++++.++++. +|+|.+|++++..
T Consensus       139 ~~l~~~~~~~ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~  182 (212)
T 2v82_A          139 KALKAVLPSDIAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRA  182 (212)
T ss_dssp             HHHHTTSCTTCEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCT
T ss_pred             HHHHHhccCCCeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCC
Confidence            99998874 49999999997 9999999977 9999999999765

>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}

Probab=98.82  E-value=4e-08  Score=93.60  Aligned_cols=146  Identities=14%  Similarity=0.218  Sum_probs=115.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-..++..+++.+.++|+.+.+.||+.|.|+.|+                +++...++++++|+++  ++++.++..
T Consensus       134 ~vp~~~~~g~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~~~e~v~avR~a~g~d~~l~vDan  197 (397)
T 2qde_A          134 RIPLGLVLGAGEPEAVAEEALAVLREGFHFVKLKAGG----------------PLKADIAMVAEVRRAVGDDVDLFIDIN  197 (397)
T ss_dssp             SEEBCEECCCSCHHHHHHHHHHHHHHTCSCEEEECCS----------------CHHHHHHHHHHHHHHHCTTSCEEEECT
T ss_pred             CcceEEECCCCCHHHHHHHHHHHHHhhhhheeecccC----------------CHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence            3455555544789999999999988899999999773                5677788999999987  588888887


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.|++++.
T Consensus       198 ~~~~~----~~a~~~~~~l~~~~i~~iE--------qP--------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~  256 (397)
T 2qde_A          198 GAWTY----DQALTTIRALEKYNLSKIE--------QP--------LPAWDLDGMARLRGKV-ATPIYADESAQELHDLL  256 (397)
T ss_dssp             TCCCH----HHHHHHHHHHGGGCCSCEE--------CC--------SCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHH
T ss_pred             CCCCH----HHHHHHHHHHHhCCCCEEE--------CC--------CChhhHHHHHHHHhhC-CCCEEEeCCcCCHHHHH
Confidence            77764    3578999999999999873        11        1235899999999988 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++.  ||.|++--.-.+...=..++
T Consensus       257 ~~i~~~~~d~v~ik~~~~GGit~~~~i  283 (397)
T 2qde_A          257 AIINKGAADGLMIKTQKAGGLLKAQRW  283 (397)
T ss_dssp             HHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             HHHHcCCCCEEEEeccccCCHHHHHHH
Confidence            99975  99999976655555433333

>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}

Probab=98.81  E-value=2.9e-08  Score=94.74  Aligned_cols=142  Identities=15%  Similarity=0.141  Sum_probs=111.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEecc------CCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNC------GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDD  127 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~------gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~  127 (311)
                      ++++|+++|+.+.+.||+.|.|+.      |++...   ...|....++++...++++++|+++  ++++.++..-+|+.
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~  222 (403)
T 2ox4_A          146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGV---FLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDL  222 (403)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTC---CCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccC---cccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH
Confidence            899999999999999999999996      765322   1123223456788889999999987  68888888777764


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                          ++..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.|+++++++++.
T Consensus       223 ----~~ai~~~~~l~~~~i~~iE--------~P--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~  281 (403)
T 2ox4_A          223 ----VSAIQFAKAIEEFNIFFYE--------EI--------NTPLNPRLLKEAKKKI-DIPLASGERIYSRWGFLPFLED  281 (403)
T ss_dssp             ----HHHHHHHHHHGGGCEEEEE--------CC--------SCTTSTHHHHHHHHTC-CSCEEECTTCCHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhhCCCEEe--------CC--------CChhhHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHc
Confidence                3578999999999988772        11        1235899999999998 7999999999999999999975


Q ss_pred             --cCEEEEehhhhhCC
Q psy2386         208 --IDGVMLGREAYKNP  221 (311)
Q Consensus       208 --adgVmigRa~l~~P  221 (311)
                        ||.|++--.-.+..
T Consensus       282 ~~~d~v~ik~~~~GGi  297 (403)
T 2ox4_A          282 RSIDVIQPDLGTCGGF  297 (403)
T ss_dssp             TCCSEECCCHHHHTHH
T ss_pred             CCCCEEecCccccCCH
Confidence              99999965554444

>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}

Probab=98.81  E-value=2.1e-08  Score=95.38  Aligned_cols=148  Identities=14%  Similarity=0.108  Sum_probs=115.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccc--cccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCC
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR--VQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDIN  129 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~--v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~  129 (311)
                      +.++++++++|+.+.+.||+.|.|+.||+..-  -....||+...++++...++++++|+++  ++++.++..-+|+.  
T Consensus       135 ~~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~--  212 (392)
T 2poz_A          135 ADTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTT--  212 (392)
T ss_dssp             CCSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH--
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH--
Confidence            46899999999999999999999999975320  0012345555677888999999999987  58888888777764  


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                        ++..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.|++++.++++.  
T Consensus       213 --~~a~~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~~  273 (392)
T 2poz_A          213 --DETIRFCRKIGELDICFVE--------EP--------CDPFDNGALKVISEQI-PLPIAVGERVYTRFGFRKIFELQA  273 (392)
T ss_dssp             --HHHHHHHHHHGGGCEEEEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHTTTC
T ss_pred             --HHHHHHHHHHHhcCCCEEE--------CC--------CCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCC
Confidence              3578999999999988762        11        1235899999999998 7999999999999999999975  


Q ss_pred             cCEEEEehhhhhCCc
Q psy2386         208 IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 adgVmigRa~l~~P~  222 (311)
                      ||.|++--.-.+...
T Consensus       274 ~d~v~ik~~~~GGit  288 (392)
T 2poz_A          274 CGIIQPDIGTAGGLM  288 (392)
T ss_dssp             CSEECCCTTTSSCHH
T ss_pred             CCEEecCccccCCHH
Confidence            999998544444443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.80  E-value=7.7e-08  Score=86.87  Aligned_cols=165  Identities=15%  Similarity=0.134  Sum_probs=108.3

Q ss_pred             CCCeEEEecCCCH--HHHHHHHHHHHHcCCCEEEecc--CCCccc---cccCc-----ccCcccCChHHHHHHHHHHhcc
Q psy2386          45 EHPIAFQVGDNEP--KKLAKSAKIIQKWGYDEINLNC--GCPSNR---VQNGF-----FGAILMTKPLLVSDCIKAMRDS  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~~--~~~~~aa~~~~~~g~d~IdiN~--gCP~~~---v~~~~-----~G~~Ll~~~~~~~~iv~~v~~~  112 (311)
                      +..++.-|...+|  +.+.+.++.+++.|+|.|||++  +=|...   +.+-.     .|    -+.+.+.++++++|+.
T Consensus        17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G----~~~~~~~~~v~~ir~~   92 (267)
T 3vnd_A           17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAG----TTSSDCFDIITKVRAQ   92 (267)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhc
Confidence            4568888887777  9999999999999999999973  333221   00000     11    2456778999999987


Q ss_pred             -ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--------------------------Ccc---------
Q psy2386         113 -VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--------------------------RNA---------  156 (311)
Q Consensus       113 -~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--------------------------Rt~---------  156 (311)
                       +++|+.+-.-.  +.-..+ -...|++.+.++|+|.++++.                          .|.         
T Consensus        93 ~~~~Pivlm~Y~--npv~~~-g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~  169 (267)
T 3vnd_A           93 HPDMPIGLLLYA--NLVFAN-GIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSE  169 (267)
T ss_dssp             CTTCCEEEEECH--HHHHHH-CHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEecC--cHHHHh-hHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHH
Confidence             78997764221  110000 125678888888888877541                          110         


Q ss_pred             ---------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         157 ---------FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       157 ---------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                               ...|.+|... ..++...+.++++++.. ++||+..|||+|++++.+.+.. ||||.+|++++
T Consensus       170 ~~~gfvY~vS~~GvTG~~~-~~~~~~~~~v~~vr~~~-~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv  239 (267)
T 3vnd_A          170 QGEGYTYLLSRAGVTGTES-KAGEPIENILTQLAEFN-APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVV  239 (267)
T ss_dssp             HCCSCEEESCCCCCC---------CHHHHHHHHHTTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             hCCCcEEEEecCCCCCCcc-CCcHHHHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHH
Confidence                     0123333321 11223468899999887 8999999999999999966655 99999999885

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=98.79  E-value=1.4e-07  Score=89.66  Aligned_cols=123  Identities=8%  Similarity=-0.018  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ++++++++|+.+.+.||+.|.|++|+               .+++...++++++|+++  ++++.+...-+|+.    ++
T Consensus       145 ~~~~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~----~~  205 (389)
T 2oz8_A          145 DDDAFVSLFSHAASIGYSAFKIKVGH---------------RDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTS----KE  205 (389)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCC---------------SSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCH----HH
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEccCC---------------CCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCH----HH
Confidence            89999999999999999999999887               24577789999999988  57888888777763    35


Q ss_pred             HHHHHHHHHH--cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         134 VRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       134 ~~e~~~~l~~--~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ..++++.+++  .|+.+|-        +-        .++.||+..+++++.++++||++.+.+ +++++.++++.  ||
T Consensus       206 a~~~~~~l~~~g~~i~~iE--------qP--------~~~~~~~~~~~l~~~~~~iPIa~dE~~-~~~~~~~~i~~~~~d  268 (389)
T 2oz8_A          206 ALTKLVAIREAGHDLLWVE--------DP--------ILRHDHDGLRTLRHAVTWTQINSGEYL-DLQGKRLLLEAHAAD  268 (389)
T ss_dssp             HHHHHHHHHHTTCCCSEEE--------SC--------BCTTCHHHHHHHHHHCCSSEEEECTTC-CHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHhcCCCceEEe--------CC--------CCCcCHHHHHHHHhhCCCCCEEeCCCC-CHHHHHHHHHcCCCC
Confidence            7899999999  6776652        11        123589999999998624999999999 99999999976  99


Q ss_pred             EEEEe
Q psy2386         210 GVMLG  214 (311)
Q Consensus       210 gVmig  214 (311)
                      .|++.
T Consensus       269 ~v~ik  273 (389)
T 2oz8_A          269 ILNVH  273 (389)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99998

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.79  E-value=2.4e-07  Score=80.41  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=105.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccc--------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEI--------  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~--------  115 (311)
                      ..++.+.+.+.+.+.    +..+.+.|++.+=+.   |.           ..+.++++..+.+.+... .-.        
T Consensus        53 ~~~i~vi~~~~~~~~----~~~~~~~Ga~~~l~k---p~-----------~~~~~~l~~~i~~~~~~~~~~~~~d~~~~~  114 (237)
T 3cwo_X           53 NAKIIVCSAMGQQAM----VIEAIKAGAKDFIVN---TA-----------AVENPSLITQIAQTFGSQAVVVAIDAKRVD  114 (237)
T ss_dssp             SCCEEEECCSSTHHH----HHHHHHTTCCEEEES---HH-----------HHHCTHHHHHHHHHHTGGGEEEEEEEEESS
T ss_pred             CCCEEEEECCCCHHH----HHHHHHCCHHheEeC---Cc-----------ccChHHHHHHHHHHhCCCceEEEeeecccC
Confidence            456667676666333    334456787765322   10           123456666666555432 111        


Q ss_pred             -eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc--cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         116 -DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN--AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       116 -pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt--~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                       .+.+....+.....  ....++++.+...|+..+.+++.+  ....|           .+++.+.++++.. ++|||+.
T Consensus       115 ~~~~v~~~~g~~~~~--~~~~~~i~~~~~~~~~~vli~~~~~~g~~~g-----------~~~~~i~~~~~~~-~~Pvia~  180 (237)
T 3cwo_X          115 GEFMVFTYSGKKNTG--ILLRDWVVEVEKRGAGEILLTSIDRDGTKSG-----------YDTEMIRFVRPLT-TLPIIAS  180 (237)
T ss_dssp             SCEEEEETTTTEEEE--EEHHHHHHHHHHHTCSEEEEEETTTTTCCSC-----------CCHHHHHHHGGGC-CSCEEEE
T ss_pred             CcEEEEEeCCccccc--cCHHHHHHHHhhcCCCeEEEEecCCCCcccc-----------ccHHHHHHHHHhc-CCCEEec
Confidence             12222222211111  135788899999999989888753  21111           3588999999887 8999999


Q ss_pred             cCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         193 GGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       193 GgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                      ||+.+++++.++++. +|+|++|++++.+||.+.++.+.+...
T Consensus       181 ~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~~  223 (237)
T 3cwo_X          181 GGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH  223 (237)
T ss_dssp             SCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHHC
Confidence            999999999999976 999999999999999999998876543

>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*

Probab=98.79  E-value=4.5e-08  Score=93.16  Aligned_cols=137  Identities=12%  Similarity=0.045  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ++++|+++|+.+.+.||+.|.|+.|-               .+++...+++++||+++  ++++.++..-+|+.    ++
T Consensus       162 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~----~~  222 (393)
T 2og9_A          162 PIDQLMVNASASIERGIGGIKLKVGQ---------------PDGALDIARVTAVRKHLGDAVPLMVDANQQWDR----PT  222 (393)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECCC---------------SCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCH----HH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCH----HH
Confidence            89999999999999999999998652               24788889999999987  68899988777764    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..++++.+++.|+++|.        +-        .++.||+..+++++.+ ++||++.+.+.+++++.++++.  ||.|
T Consensus       223 a~~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v  285 (393)
T 2og9_A          223 AQRMCRIFEPFNLVWIE--------EP--------LDAYDHEGHAALALQF-DTPIATGEMLTSAAEHGDLIRHRAADYL  285 (393)
T ss_dssp             HHHHHHHHGGGCCSCEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             HHHHHHHHHhhCCCEEE--------CC--------CCcccHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHCCCCCEE
Confidence            78999999999999873        11        1235899999999998 7999999999999999999976  9999


Q ss_pred             EEehhhhhCCcchHHhH
Q psy2386         212 MLGREAYKNPFLMSNFD  228 (311)
Q Consensus       212 migRa~l~~P~i~~~~~  228 (311)
                      ++--.-.+...=..++.
T Consensus       286 ~ik~~~~GGit~~~~i~  302 (393)
T 2og9_A          286 MPDAPRVGGITPFLKIA  302 (393)
T ss_dssp             CCCHHHHTSHHHHHHHH
T ss_pred             eeCccccCCHHHHHHHH
Confidence            99765555544333443

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=98.78  E-value=4.3e-07  Score=82.11  Aligned_cols=148  Identities=14%  Similarity=0.103  Sum_probs=113.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      -+.|+..+=|-.|+.+..+|    ..+|+|+|=|+..+              + +++.+.++++..++ .+.-+.|-+..
T Consensus       119 v~lPVl~Kdfi~d~~qi~ea----~~~GAD~VlLi~a~--------------L-~~~~l~~l~~~a~~-lGl~~lvevh~  178 (272)
T 3tsm_A          119 CSLPALRKDFLFDPYQVYEA----RSWGADCILIIMAS--------------V-DDDLAKELEDTAFA-LGMDALIEVHD  178 (272)
T ss_dssp             SSSCEEEESCCCSTHHHHHH----HHTTCSEEEEETTT--------------S-CHHHHHHHHHHHHH-TTCEEEEEECS
T ss_pred             cCCCEEECCccCCHHHHHHH----HHcCCCEEEEcccc--------------c-CHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence            46788888778888875543    47899999997432              2 45677888888776 47776666531


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~  202 (311)
                                 .+-++++.+.|++.|-+..|+.  ..+         ..|++...++.+.+| ++|+|+-|||.|++|+.
T Consensus       179 -----------~eEl~~A~~~ga~iIGinnr~l--~t~---------~~dl~~~~~L~~~ip~~~~vIaesGI~t~edv~  236 (272)
T 3tsm_A          179 -----------EAEMERALKLSSRLLGVNNRNL--RSF---------EVNLAVSERLAKMAPSDRLLVGESGIFTHEDCL  236 (272)
T ss_dssp             -----------HHHHHHHTTSCCSEEEEECBCT--TTC---------CBCTHHHHHHHHHSCTTSEEEEESSCCSHHHHH
T ss_pred             -----------HHHHHHHHhcCCCEEEECCCCC--ccC---------CCChHHHHHHHHhCCCCCcEEEECCCCCHHHHH
Confidence                       1234666789999999998863  222         257888889988876 59999999999999999


Q ss_pred             HHHhh-cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      ++.+. +|||.||.+++..+..-..+.+.+.+
T Consensus       237 ~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~g  268 (272)
T 3tsm_A          237 RLEKSGIGTFLIGESLMRQHDVAAATRALLTG  268 (272)
T ss_dssp             HHHTTTCCEEEECHHHHTSSCHHHHHHHHHHC
T ss_pred             HHHHcCCCEEEEcHHHcCCcCHHHHHHHHHhc
Confidence            99986 99999999999999988877765544

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.78  E-value=3.2e-07  Score=86.02  Aligned_cols=139  Identities=15%  Similarity=0.151  Sum_probs=96.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      ++.+.+ |.+++.+.++..+++. .|++.|.++..-          |     ++..+.+.++++++.. ++||.+|.=. 
T Consensus       108 ~v~~~~-g~~~~~~~~~~~l~~~~~g~~~i~i~~~~----------g-----~~~~~~~~i~~lr~~~~~~~vi~g~v~-  170 (351)
T 2c6q_A          108 HLAASS-GTGSSDFEQLEQILEAIPQVKYICLDVAN----------G-----YSEHFVEFVKDVRKRFPQHTIMAGNVV-  170 (351)
T ss_dssp             TEEEEE-CSSHHHHHHHHHHHHHCTTCCEEEEECSC----------T-----TBHHHHHHHHHHHHHCTTSEEEEEEEC-
T ss_pred             eeEeec-CCChHHHHHHHHHHhccCCCCEEEEEecC----------C-----CcHHHHHHHHHHHHhcCCCeEEEEeCC-
Confidence            466666 6667777665555443 388998876421          1     4566778899999988 8999887422 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCc------cccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCeEEEecCC
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARN------AFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELEIIINGGI  195 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt------~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ipvi~nGgI  195 (311)
                               ..+-++.+.++|+|+|.|....      ....|.        +......+.++   ++.. ++|||+.|||
T Consensus       171 ---------t~e~A~~a~~aGaD~I~v~~g~G~~~~~r~~~g~--------~~p~~~~l~~v~~~~~~~-~ipvIa~GGI  232 (351)
T 2c6q_A          171 ---------TGEMVEELILSGADIIKVGIGPGSVCTTRKKTGV--------GYPQLSAVMECADAAHGL-KGHIISDGGC  232 (351)
T ss_dssp             ---------SHHHHHHHHHTTCSEEEECSSCSTTBCHHHHHCB--------CCCHHHHHHHHHHHHHHT-TCEEEEESCC
T ss_pred             ---------CHHHHHHHHHhCCCEEEECCCCCcCcCccccCCC--------CccHHHHHHHHHHHHhhc-CCcEEEeCCC
Confidence                     1467889999999999874211      001111        11233334443   4444 7999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      +++.|+.+++.. ||+|++||.++.-
T Consensus       233 ~~g~di~kAlalGA~~V~vG~~fl~~  258 (351)
T 2c6q_A          233 SCPGDVAKAFGAGADFVMLGGMLAGH  258 (351)
T ss_dssp             CSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CCHHHHHHHHHcCCCceeccHHHhcC
Confidence            999999999987 9999999999863

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.78  E-value=1.9e-07  Score=84.35  Aligned_cols=166  Identities=15%  Similarity=0.174  Sum_probs=109.4

Q ss_pred             CCCeEEEecCCCH--HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc----------CChHHHHHHHHHHhcc
Q psy2386          45 EHPIAFQVGDNEP--KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM----------TKPLLVSDCIKAMRDS  112 (311)
Q Consensus        45 ~~p~~~Ql~g~~~--~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll----------~~~~~~~~iv~~v~~~  112 (311)
                      +..++.-|...+|  +.+.+.++.+++.|+|+|+|+.  |...-.-+  |....          -+.+...++++++++.
T Consensus        16 ~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~--P~sdp~~D--G~~i~~a~~~al~~G~~~~~~~~~v~~ir~~   91 (268)
T 1qop_A           16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV--PFSDPLAD--GPTIQNANLRAFAAGVTPAQCFEMLAIIREK   91 (268)
T ss_dssp             CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCSCCTTC--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCccCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence            4457888877777  8899999999999999999964  33210000  00000          1456667899999998


Q ss_pred             -ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-----------------------------------
Q psy2386         113 -VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-----------------------------------  156 (311)
Q Consensus       113 -~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-----------------------------------  156 (311)
                       +++||.+ +- .++.-..+ ....+++.+.++|+|.+++|.-+.                                   
T Consensus        92 ~~~~Pv~l-m~-y~n~v~~~-g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~  168 (268)
T 1qop_A           92 HPTIPIGL-LM-YANLVFNN-GIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVAS  168 (268)
T ss_dssp             CSSSCEEE-EE-CHHHHHTT-CHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHH
T ss_pred             CCCCCEEE-EE-cccHHHHh-hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHh
Confidence             7899765 21 11100000 125778888888888888753210                                   


Q ss_pred             ---------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         157 ---------FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       157 ---------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                               ...|++|.... ..+...++++++++.. ++||+..|||+|++++.+++.. ||+|++|++++.
T Consensus       169 ~~~g~v~~~s~~G~tG~~~~-~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~  239 (268)
T 1qop_A          169 YGRGYTYLLSRSGVTGAENR-GALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK  239 (268)
T ss_dssp             HCCSCEEEESSSSCCCSSSC-C--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             hCCCcEEEEecCCcCCCccC-CCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhh
Confidence                     00133332111 1223478999999987 8999999999999999996655 999999999864

>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A

Probab=98.78  E-value=6.7e-08  Score=93.16  Aligned_cols=151  Identities=13%  Similarity=0.060  Sum_probs=120.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+...+.||+.|.++.|||....  .|. ....++++...+++++||+++  ++++.|...-+|+.    +
T Consensus       145 ~~~e~~~~~a~~~~~~Gf~~iKlk~g~~~~~~--~G~-~~~~~~~~~d~e~v~avR~avG~d~~L~vDan~~~t~----~  217 (433)
T 3rcy_A          145 TSADMAAESAADCVARGYTAVKFDPAGPYTLR--GGH-MPAMTDISLSVEFCRKIRAAVGDKADLLFGTHGQFTT----A  217 (433)
T ss_dssp             TCHHHHHHHHHHHHHTTCSEEEECCSCCCBTT--CCB-CCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCH----H
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCcccc--cCC-CcchhhHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCH----H
Confidence            78999999999988899999999999997542  111 122346778889999999987  57888887777764    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +..++++.|++.|+.+|--                ..++.|++..+++++.+ ++||.+.+.+.|++++.++++.  +|.
T Consensus       218 ~A~~~~~~Le~~~i~~iEe----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~g~~D~  280 (433)
T 3rcy_A          218 GAIRLGQAIEPYSPLWYEE----------------PVPPDNVGAMAQVARAV-RIPVATGERLTTKAEFAPVLREGAAAI  280 (433)
T ss_dssp             HHHHHHHHHGGGCCSEEEC----------------CSCTTCHHHHHHHHHHS-SSCEEECTTCCSHHHHHHHHHTTCCSE
T ss_pred             HHHHHHHHhhhcCCCEEEC----------------CCChhhHHHHHHHHhcc-CCCEEecCCCCCHHHHHHHHHcCCCCE
Confidence            5788999999999998831                12235899999999998 7999999999999999999975  999


Q ss_pred             EEEehhhhhCCcchHHhHh
Q psy2386         211 VMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       211 VmigRa~l~~P~i~~~~~~  229 (311)
                      |++--+-.+...=..++.+
T Consensus       281 v~~d~~~~GGit~~~kia~  299 (433)
T 3rcy_A          281 LQPALGRAGGIWEMKKVAA  299 (433)
T ss_dssp             ECCCHHHHTHHHHHHHHHH
T ss_pred             EEeCchhcCCHHHHHHHHH
Confidence            9998776666665555544

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.76  E-value=1.6e-08  Score=90.00  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.++++.++++|++.|.++..+..  +.       ....+++.++++++.+ ++||+++|+|++++++.++++. ||+|
T Consensus        32 d~~~~a~~~~~~Gad~i~v~d~~~~--~~-------~~~~~~~~i~~i~~~~-~iPvi~~Ggi~~~~~~~~~~~~Gad~V  101 (252)
T 1ka9_F           32 DPVEAARAYDEAGADELVFLDISAT--HE-------ERAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKV  101 (252)
T ss_dssp             CHHHHHHHHHHHTCSCEEEEECCSS--TT-------CHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCCcc--cc-------CccccHHHHHHHHHhC-CCCEEEECCcCCHHHHHHHHHcCCCEE
Confidence            4679999999999999999866531  10       1124688899999987 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      ++|++++.+|+++.++.+.+
T Consensus       102 ~lg~~~l~~p~~~~~~~~~~  121 (252)
T 1ka9_F          102 SVNSAAVRRPELIRELADHF  121 (252)
T ss_dssp             EECHHHHHCTHHHHHHHHHH
T ss_pred             EEChHHHhCcHHHHHHHHHc
Confidence            99999999999988886653

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=98.76  E-value=7.5e-07  Score=80.63  Aligned_cols=145  Identities=12%  Similarity=0.149  Sum_probs=106.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      .+.|++..=+.-|+.++.+|.    .+|+|+|=|...+              + +++.+.++++..++ .+..+.+-+. 
T Consensus       112 v~lPvl~kdfiid~~qv~~A~----~~GAD~VlLi~a~--------------l-~~~~l~~l~~~a~~-lGl~~lvev~-  170 (272)
T 3qja_A          112 VSIPVLRKDFVVQPYQIHEAR----AHGADMLLLIVAA--------------L-EQSVLVSMLDRTES-LGMTALVEVH-  170 (272)
T ss_dssp             CSSCEEEESCCCSHHHHHHHH----HTTCSEEEEEGGG--------------S-CHHHHHHHHHHHHH-TTCEEEEEES-
T ss_pred             CCCCEEECccccCHHHHHHHH----HcCCCEEEEeccc--------------C-CHHHHHHHHHHHHH-CCCcEEEEcC-
Confidence            357888777788887765543    6899999986321              1 24567777777765 5777666442 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~  202 (311)
                            +.   .+ +..+.+.|++.|-+++|+.  ..+         ..|++.+.++.+.+| ++||++.|||.|++|+.
T Consensus       171 ------t~---ee-~~~A~~~Gad~IGv~~r~l--~~~---------~~dl~~~~~l~~~v~~~~pvVaegGI~t~edv~  229 (272)
T 3qja_A          171 ------TE---QE-ADRALKAGAKVIGVNARDL--MTL---------DVDRDCFARIAPGLPSSVIRIAESGVRGTADLL  229 (272)
T ss_dssp             ------SH---HH-HHHHHHHTCSEEEEESBCT--TTC---------CBCTTHHHHHGGGSCTTSEEEEESCCCSHHHHH
T ss_pred             ------CH---HH-HHHHHHCCCCEEEECCCcc--ccc---------ccCHHHHHHHHHhCcccCEEEEECCCCCHHHHH
Confidence                  11   23 4455678999999998863  111         246778889988876 69999999999999999


Q ss_pred             HHHhh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      ++.+. +|||.||++++..+..-..+.+.
T Consensus       230 ~l~~~GadgvlVGsal~~a~dp~~~~~~l  258 (272)
T 3qja_A          230 AYAGAGADAVLVGEGLVTSGDPRAAVADL  258 (272)
T ss_dssp             HHHHTTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred             HHHHcCCCEEEEcHHHhCCCCHHHHHHHH
Confidence            99987 99999999999888766555543

>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*

Probab=98.75  E-value=7.8e-08  Score=91.68  Aligned_cols=136  Identities=12%  Similarity=0.023  Sum_probs=110.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ++++|.++|+.+.+.||+.|.|+.|.               .+++...++++++|+++  ++++.++..-+|+.    ++
T Consensus       175 ~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~----~~  235 (398)
T 2pp0_A          175 PLDQVLKNVVISRENGIGGIKLKVGQ---------------PNCAEDIRRLTAVREALGDEFPLMVDANQQWDR----ET  235 (398)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEECCC---------------SCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCH----HH
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEecCC---------------CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCH----HH
Confidence            89999999999999999999998764               25778889999999987  58899988877764    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.+++++.++++.  ||.|
T Consensus       236 ai~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~d~v  298 (398)
T 2pp0_A          236 AIRMGRKMEQFNLIWIE--------EP--------LDAYDIEGHAQLAAAL-DTPIATGEMLTSFREHEQLILGNASDFV  298 (398)
T ss_dssp             HHHHHHHHGGGTCSCEE--------CC--------SCTTCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHTTCCSEE
T ss_pred             HHHHHHHHHHcCCceee--------CC--------CChhhHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCEE
Confidence            78999999999999872        11        1235899999999998 7999999999999999999975  9999


Q ss_pred             EEehhhhhCCcchHHh
Q psy2386         212 MLGREAYKNPFLMSNF  227 (311)
Q Consensus       212 migRa~l~~P~i~~~~  227 (311)
                      ++--.-.+...=..++
T Consensus       299 ~ik~~~~GGite~~~i  314 (398)
T 2pp0_A          299 QPDAPRVGGISPFLKI  314 (398)
T ss_dssp             CCCHHHHTSHHHHHHH
T ss_pred             EeCccccCCHHHHHHH
Confidence            9965555554433333

>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}

Probab=98.73  E-value=8.8e-08  Score=91.47  Aligned_cols=141  Identities=17%  Similarity=0.173  Sum_probs=109.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEecc------CCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNC------GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDD  127 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~------gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~  127 (311)
                      ++++|+++|+.+.+.||+.|.|+.      |++...   ...|....++++...++++++|+++  ++++.++..-+|+.
T Consensus       152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s---~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~  228 (407)
T 2o56_A          152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQ---NLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDT  228 (407)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCS---CCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccC---cccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence            899999999999999999999996      653211   1122222346688889999999987  58888888777754


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                          ++..++++.+++.|+++|-        +        ..++.||+..+++++.+ ++||++.+.+.+++++.++++.
T Consensus       229 ----~~a~~~~~~l~~~~i~~iE--------~--------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~  287 (407)
T 2o56_A          229 ----TSAIQFGRMIEELGIFYYE--------E--------PVMPLNPAQMKQVADKV-NIPLAAGERIYWRWGYRPFLEN  287 (407)
T ss_dssp             ----HHHHHHHHHHGGGCCSCEE--------C--------SSCSSSHHHHHHHHHHC-CSCEEECTTCCHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHHhcCCCEEe--------C--------CCChhhHHHHHHHHHhC-CCCEEeCCCcCCHHHHHHHHHc
Confidence                3578999999999999873        1        11235899999999998 7999999999999999999975


Q ss_pred             --cCEEEEehhhhhC
Q psy2386         208 --IDGVMLGREAYKN  220 (311)
Q Consensus       208 --adgVmigRa~l~~  220 (311)
                        ||.|++=-.-.+.
T Consensus       288 ~~~d~v~ik~~~~GG  302 (407)
T 2o56_A          288 GSLSVIQPDICTCGG  302 (407)
T ss_dssp             TCCSEECCCTTTTTH
T ss_pred             CCCCEEecCccccCC
Confidence              9999985444333

>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}

Probab=98.73  E-value=9.1e-08  Score=91.52  Aligned_cols=135  Identities=15%  Similarity=0.163  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEecc----CCCccccccCcccCccc--CChHHHHHHHHHHhccc--cceeEEEEeccCCC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNC----GCPSNRVQNGFFGAILM--TKPLLVSDCIKAMRDSV--EIDITVKHRIGIDD  127 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~----gCP~~~v~~~~~G~~Ll--~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~  127 (311)
                      +|+.++++|+.+.+.||+.|.++.    |+....     +|+.+.  ++++...++++++|+++  ++++.+...-+|+.
T Consensus       149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~-----~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~  223 (410)
T 2qq6_A          149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRD-----FWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDI  223 (410)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSC-----SSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCC-----cCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH
Confidence            799999999999999999999998    664221     455554  47788889999999987  57888887767753


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                          ++..++++.+++.|+++|--        -        .++.||+..+++++.+ ++||++.+.+.+++++.++++.
T Consensus       224 ----~~a~~~~~~l~~~~i~~iEe--------P--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~  282 (410)
T 2qq6_A          224 ----PSSIRFARAMEPFGLLWLEE--------P--------TPPENLDALAEVRRST-STPICAGENVYTRFDFRELFAK  282 (410)
T ss_dssp             ----HHHHHHHHHHGGGCCSEEEC--------C--------SCTTCHHHHHHHHTTC-SSCEEECTTCCSHHHHHHHHHT
T ss_pred             ----HHHHHHHHHHhhcCCCeEEC--------C--------CChhhHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHc
Confidence                35789999999999998731        0        1235899999999988 7999999999999999999975


Q ss_pred             --cCEEEEehh
Q psy2386         208 --IDGVMLGRE  216 (311)
Q Consensus       208 --adgVmigRa  216 (311)
                        ||.|++=-.
T Consensus       283 ~~~d~v~ik~~  293 (410)
T 2qq6_A          283 RAVDYVMPDVA  293 (410)
T ss_dssp             TCCSEECCBHH
T ss_pred             CCCCEEecCcc
Confidence              999998433

>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A

Probab=98.72  E-value=9.8e-08  Score=91.46  Aligned_cols=156  Identities=11%  Similarity=0.076  Sum_probs=122.9

Q ss_pred             CCCCeEEE-ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEE
Q psy2386          44 EEHPIAFQ-VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Q-l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvK  120 (311)
                      +..|+-.. +...+|+.++++|+.+.+.||+.|.|++|++..    +  |+   ++++...+++++||+++  ++++.|.
T Consensus       166 ~~v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~----d--g~---~~~~~die~v~avReavG~d~~L~vD  236 (412)
T 3stp_A          166 DRIPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPK----D--GM---PGMRENLKRVEAVREVIGYDNDLMLE  236 (412)
T ss_dssp             SSEEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGG----G--HH---HHHHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcc----c--cc---chHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            34556555 355789999999999999999999999998621    1  21   45677888999999987  6789999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      ..-+|+.    ++..++++.+++.|+++|-        +        ..++.|++..+++++.. ++||.+.+.+.|+++
T Consensus       237 aN~~~~~----~~Ai~~~~~Le~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~  295 (412)
T 3stp_A          237 CYMGWNL----DYAKRMLPKLAPYEPRWLE--------E--------PVIADDVAGYAELNAMN-IVPISGGEHEFSVIG  295 (412)
T ss_dssp             CTTCSCH----HHHHHHHHHHGGGCCSEEE--------C--------CSCTTCHHHHHHHHHTC-SSCEEECTTCCSHHH
T ss_pred             CCCCCCH----HHHHHHHHHHHhcCCCEEE--------C--------CCCcccHHHHHHHHhCC-CCCEEeCCCCCCHHH
Confidence            8888864    3578999999999999883        1        11235899999999997 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.++++.  ||.|++--+-.+...=..++.+
T Consensus       296 ~~~li~~~a~D~v~ik~~~~GGit~a~kia~  326 (412)
T 3stp_A          296 CAELINRKAVSVLQYDTNRVGGITAAQKINA  326 (412)
T ss_dssp             HHHHHHTTCCSEECCCHHHHTHHHHHHHHHH
T ss_pred             HHHHHHcCCCCEEecChhhcCCHHHHHHHHH
Confidence            9999975  9999998777666554544443

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.72  E-value=1.5e-07  Score=84.87  Aligned_cols=167  Identities=14%  Similarity=0.074  Sum_probs=100.7

Q ss_pred             CeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhccc-cc
Q psy2386          47 PIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDSV-EI  115 (311)
Q Consensus        47 p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~~-~~  115 (311)
                      .++.=|..  .+.+...+.++.+++.|+|.|||+  -|...-..+|-      -.+|-  -+.+.+.++++++++.+ ++
T Consensus        18 ~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG--~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~   95 (262)
T 2ekc_A           18 ALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIG--FPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI   95 (262)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEE--CCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred             eEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence            34444433  345788888999999999999995  44421100100      00000  24566778999999988 89


Q ss_pred             eeEEEEeccCCCC-CcHHHHHHHHHHHHHcCCCEEEEecC--------------------------cc------------
Q psy2386         116 DITVKHRIGIDDI-NSYDFVRDFVGTVSSAGCRTFIVHAR--------------------------NA------------  156 (311)
Q Consensus       116 pvsvKiR~g~~~~-~~~~~~~e~~~~l~~~G~~~itvh~R--------------------------t~------------  156 (311)
                      |+.+ +  +..+. ..+ ....+++.+.++|+|.++++.-                          +.            
T Consensus        96 Pi~~-m--~y~n~v~~~-g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~  171 (262)
T 2ekc_A           96 PFLL-M--TYYNPIFRI-GLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAAD  171 (262)
T ss_dssp             CEEE-E--CCHHHHHHH-CHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCS
T ss_pred             CEEE-E--ecCcHHHHh-hHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence            9877 2  11110 000 1146677777777777765321                          00            


Q ss_pred             ------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhC
Q psy2386         157 ------FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKN  220 (311)
Q Consensus       157 ------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~  220 (311)
                            ...|.+|...........++++++++.. ++||...|||.|++++.++...||+|++|++++..
T Consensus       172 gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~vG~GI~t~e~~~~~~~gADgvIVGSai~~~  240 (262)
T 2ekc_A          172 EMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVVGFGVSKKEHAREIGSFADGVVVGSALVKL  240 (262)
T ss_dssp             SCEEEESSCC---------CHHHHHHHHHHHHHC-CSCEEEESSCCSHHHHHHHHTTSSEEEECHHHHHH
T ss_pred             CCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEEeCCCCCHHHHHHHHcCCCEEEECHHHHhh
Confidence                  0002222211000011247899999987 89999999999999999965569999999999754

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.71  E-value=9.2e-08  Score=86.52  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=103.2

Q ss_pred             CCCeEEEecCCC--HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcc-c
Q psy2386          45 EHPIAFQVGDNE--PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDS-V  113 (311)
Q Consensus        45 ~~p~~~Ql~g~~--~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~-~  113 (311)
                      +..++.=|...+  ++...+.++.+++.|+|.|||++  |...-..+|-      --+|-  -+.+.+.++++++|+. .
T Consensus        19 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGi--PfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~   96 (271)
T 3nav_A           19 QGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGM--PFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNP   96 (271)
T ss_dssp             BCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            345666665544  58899999999999999999974  3321111110      00010  2456778899999987 7


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--------------------------cCcc-----------
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--------------------------ARNA-----------  156 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--------------------------~Rt~-----------  156 (311)
                      ++|+.+-.-...-..-   -...|++.+.++|+|.+++.                          +.+.           
T Consensus        97 ~~Pivlm~Y~n~v~~~---g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~  173 (271)
T 3nav_A           97 ETPIGLLMYANLVYAR---GIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG  173 (271)
T ss_dssp             TSCEEEEECHHHHHHT---CHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred             CCCEEEEecCcHHHHH---hHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence            8998774321100000   12457777777777776542                          1110           


Q ss_pred             ---c----cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         157 ---F----LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       157 ---~----~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                         .    ..|.+|... ..+....++++++++.. ++||+..+||+|++++.+.+.. ||||.||+++.
T Consensus       174 ~gfiY~vs~~GvTG~~~-~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv  241 (271)
T 3nav_A          174 KGYTYLLSRAGVTGAET-KANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISGSAVV  241 (271)
T ss_dssp             CSCEEECCCC---------CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             CCeEEEEeccCCCCccc-CCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence               0    113334321 11122357899999987 8999999999999999966665 99999999985

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.70  E-value=3.5e-07  Score=80.45  Aligned_cols=60  Identities=15%  Similarity=0.097  Sum_probs=53.8

Q ss_pred             CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         172 LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       172 ~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .+.+.++++++.+.++||+..|||+|++++++++..||+|.+|+++..||.++.++.+.+
T Consensus       166 ~~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~~gAD~VVVGSa~v~~p~~~~~~v~a~  225 (228)
T 3vzx_A          166 GDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAAV  225 (228)
T ss_dssp             CCHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhCCCEEEEChHHhcCHHHHHHHHHHH
Confidence            389999999998635999999999999999999966999999999999999998887654

>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A

Probab=98.70  E-value=8.2e-08  Score=91.03  Aligned_cols=137  Identities=12%  Similarity=0.101  Sum_probs=108.9

Q ss_pred             CCeEEEecC--CCH---HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeE
Q psy2386          46 HPIAFQVGD--NEP---KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDIT  118 (311)
Q Consensus        46 ~p~~~Ql~g--~~~---~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvs  118 (311)
                      .|+-..+++  .+|   +.++++|+.+.+.||+.|.|+.|+               .+++...++++++|+++  ++++.
T Consensus       124 vp~~~~~g~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~---------------~~~~~d~e~v~avR~a~G~d~~l~  188 (382)
T 2gdq_A          124 IPVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMI  188 (382)
T ss_dssp             EEEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             eeEEEEecccCCCcccHHHHHHHHHHHHHcCCCEEEEcCCC---------------CCHHHHHHHHHHHHHhhCCCCEEE
Confidence            344444433  678   999999999999999999999876               24677889999999987  58899


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      ++..-+|+.    ++..++++.+++. |+++|-        +-        .++.||+..+++++.+ ++||++.+.+.|
T Consensus       189 vDan~~~~~----~~a~~~~~~l~~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~  247 (382)
T 2gdq_A          189 LDANQSYDA----AAAFKWERYFSEWTNIGWLE--------EP--------LPFDQPQDYAMLRSRL-SVPVAGGENMKG  247 (382)
T ss_dssp             EECTTCCCH----HHHHTTHHHHTTCSCEEEEE--------CC--------SCSSCHHHHHHHHTTC-SSCEEECTTCCS
T ss_pred             EECCCCCCH----HHHHHHHHHHhhccCCeEEE--------CC--------CCcccHHHHHHHHhhC-CCCEEecCCcCC
Confidence            888877764    3567899999999 888762        11        1235899999999988 799999999999


Q ss_pred             HHHHHHHHhh--cCEEEEehhhh
Q psy2386         198 KKEIDLHLNY--IDGVMLGREAY  218 (311)
Q Consensus       198 ~~da~~~l~~--adgVmigRa~l  218 (311)
                      ++++.++++.  ||.|++--.-.
T Consensus       248 ~~~~~~~i~~~~~d~v~ik~~~~  270 (382)
T 2gdq_A          248 PAQYVPLLSQRCLDIIQPDVMHV  270 (382)
T ss_dssp             HHHHHHHHHTTCCSEECCCTTTT
T ss_pred             HHHHHHHHHcCCCCEEecCcccc
Confidence            9999999975  99999854333

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=98.70  E-value=7.8e-07  Score=80.13  Aligned_cols=160  Identities=8%  Similarity=0.050  Sum_probs=103.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCC--hHHHHHHHHHHhccccceeEEEEeccCCCC-----
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTK--PLLVSDCIKAMRDSVEIDITVKHRIGIDDI-----  128 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~--~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-----  128 (311)
                      .+++..+.++.+.+.|.|+|-|.               +.--+  .+.+.++++++++.+++|+..|.-.++.+.     
T Consensus        51 ~~~~~~~~~~~~~~sGtDai~VG---------------S~~vt~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i~~  115 (286)
T 3vk5_A           51 PVTEAVEKAAELTRLGFAAVLLA---------------STDYESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPVVR  115 (286)
T ss_dssp             CHHHHHHHHHHHHHTTCSCEEEE---------------CSCCSSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCCCT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEc---------------cCCCCcchHHHHHHHHHHHHhCCCCEEEECCCCCCCcccccc
Confidence            35777777888888999999984               12123  578999999999988999999877333211     


Q ss_pred             -------------CcHHHHHHH------HHHH----HHcC----CCEEEEecC-cc-ccccCC---CCcC----------
Q psy2386         129 -------------NSYDFVRDF------VGTV----SSAG----CRTFIVHAR-NA-FLKKLN---PKQN----------  166 (311)
Q Consensus       129 -------------~~~~~~~e~------~~~l----~~~G----~~~itvh~R-t~-~~~G~~---g~~~----------  166 (311)
                                   .....+...      +..+    .+.|    -.+|.+.+. +. .+-+..   ..+.          
T Consensus       116 ~aDa~l~psvlNs~n~~~i~g~~~~~~aa~~v~~~~~~~ge~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~g  195 (286)
T 3vk5_A          116 GADALLLPALLGSGDDYFVWKSFLETLAAFPGRIPREEWPELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVA  195 (286)
T ss_dssp             TCSEEEEEEETTBSSHHHHTHHHHHHHHHCSTTSCGGGCCEEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEEEecCCCcccccCcHHHHHHhHHHHHHHHHhCCcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHH
Confidence                         111111111      1113    4445    012223322 11 000000   0000          


Q ss_pred             -----------CCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC--CcchHHhHhh
Q psy2386         167 -----------RKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN--PFLMSNFDLN  230 (311)
Q Consensus       167 -----------~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~--P~i~~~~~~~  230 (311)
                                 ....+.+.+.|+++++.+. ++||++.|||+|+++++++++. ||+|.+|++++.|  |.+++++...
T Consensus       196 ad~G~~lV~LD~~~~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~~Pelv~e~a~~  274 (286)
T 3vk5_A          196 RAFGFHMVYLYSRNEHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQPDWRSALAEIAGR  274 (286)
T ss_dssp             HHTTCSEEEEECSSSCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSSTTHHHHHHHHHC-
T ss_pred             HHcCCCEEEEcCCCCcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcCCCHHHHHHHHHh
Confidence                       0114567899999999873 6999999999999999999986 9999999999999  7788887644

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.69  E-value=3.6e-07  Score=79.08  Aligned_cols=144  Identities=14%  Similarity=0.132  Sum_probs=99.3

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.+.+.-.++...  .++.+.++|+|+|-++...+                .+.+.++++.+++. +.++.+-+..-
T Consensus        53 ~~~i~~~~~~~~~~~~--~~~~~~~~Gad~v~v~~~~~----------------~~~~~~~~~~~~~~-g~~~~v~~~~~  113 (211)
T 3f4w_A           53 HKEVLADAKIMDGGHF--ESQLLFDAGADYVTVLGVTD----------------VLTIQSCIRAAKEA-GKQVVVDMICV  113 (211)
T ss_dssp             TSEEEEEEEECSCHHH--HHHHHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECTTC
T ss_pred             CCEEEEEEEeccchHH--HHHHHHhcCCCEEEEeCCCC----------------hhHHHHHHHHHHHc-CCeEEEEecCC
Confidence            5677777665554332  25666789999999973321                24456777777664 66655432211


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                          .   +..+.++.+.+.|+++|.++....   |.      ..++..++.++++++.++++||++.|||+ ++++.++
T Consensus       114 ----~---t~~~~~~~~~~~g~d~i~v~~g~~---g~------~~~~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~  176 (211)
T 3f4w_A          114 ----D---DLPARVRLLEEAGADMLAVHTGTD---QQ------AAGRKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDY  176 (211)
T ss_dssp             ----S---SHHHHHHHHHHHTCCEEEEECCHH---HH------HTTCCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHH
T ss_pred             ----C---CHHHHHHHHHHcCCCEEEEcCCCc---cc------ccCCCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHH
Confidence                1   135778889999999998874321   10      00123678999999987689999999996 9999999


Q ss_pred             Hhh-cCEEEEehhhhhCCcch
Q psy2386         205 LNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P~i~  224 (311)
                      ++. ||+|.+||+++..+...
T Consensus       177 ~~~Gad~vvvGsai~~~~d~~  197 (211)
T 3f4w_A          177 ALLGPDVVIVGSAITHAADPA  197 (211)
T ss_dssp             HTTCCSEEEECHHHHTCSSHH
T ss_pred             HHcCCCEEEECHHHcCCCCHH
Confidence            986 99999999998766543

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=98.69  E-value=3.9e-07  Score=85.04  Aligned_cols=141  Identities=13%  Similarity=0.134  Sum_probs=110.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|+-..+.+.+++++.+.|+.+.+.||+.|.|+.|+                +++...++++++|++- ++++.+...-
T Consensus       128 ~v~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~----------------~~~~d~~~v~avr~~g~~~~l~vDan~  191 (345)
T 2zad_A          128 EIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE----------------NLKEDIEAVEEIAKVTRGAKYIVDANM  191 (345)
T ss_dssp             EEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHSTTCEEEEECTT
T ss_pred             ceeeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC----------------CHHHHHHHHHHHHhhCCCCeEEEECCC
Confidence            3455556777899999999999889999999998775                4666678889998872 3566666655


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCC--EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCR--TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~--~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +|+    .++..++++.+++.|++  +|-        +       . .++.|++..+++++.. ++||.+.+.+.+++++
T Consensus       192 ~~~----~~~a~~~~~~l~~~~i~~~~iE--------~-------P-~~~~~~~~~~~l~~~~-~ipia~dE~~~~~~~~  250 (345)
T 2zad_A          192 GYT----QKEAVEFARAVYQKGIDIAVYE--------Q-------P-VRREDIEGLKFVRFHS-PFPVAADESARTKFDV  250 (345)
T ss_dssp             CSC----HHHHHHHHHHHHHTTCCCSEEE--------C-------C-SCTTCHHHHHHHHHHS-SSCEEESTTCCSHHHH
T ss_pred             CCC----HHHHHHHHHHHHhcCCCeeeee--------C-------C-CCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHH
Confidence            564    34578999999999999  762        1       1 1235899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEE--ehhhhhCCc
Q psy2386         202 DLHLNY--IDGVML--GREAYKNPF  222 (311)
Q Consensus       202 ~~~l~~--adgVmi--gRa~l~~P~  222 (311)
                      .++++.  +|.|++  ++|-+.+..
T Consensus       251 ~~~i~~~~~d~v~ik~~~GGit~~~  275 (345)
T 2zad_A          251 MRLVKEEAVDYVNIKLMKSGISDAL  275 (345)
T ss_dssp             HHHHHHTCCSEEEECHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEecccccHHHHH
Confidence            999975  999999  776555543

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.68  E-value=4.7e-08  Score=86.55  Aligned_cols=86  Identities=14%  Similarity=0.171  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      +.++++.++++|++.|+++..+....+         .+.+ +.++++++.+ ++||+++|+|.|++++.++++. ||+|+
T Consensus        33 ~~~~a~~~~~~Gad~i~v~~~d~~~~~---------~~~~-~~i~~i~~~~-~ipv~v~ggi~~~~~~~~~l~~Gad~V~  101 (244)
T 2y88_A           33 AVDAALGWQRDGAEWIHLVDLDAAFGR---------GSNH-ELLAEVVGKL-DVQVELSGGIRDDESLAAALATGCARVN  101 (244)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEHHHHTTS---------CCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHcCCCEEEEEcCcccccC---------CChH-HHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            578999999999999999976542211         1234 8899999998 8999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhh
Q psy2386         213 LGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~  230 (311)
                      +|++++.+|+.+.++.+.
T Consensus       102 lg~~~l~~p~~~~~~~~~  119 (244)
T 2y88_A          102 VGTAALENPQWCARVIGE  119 (244)
T ss_dssp             ECHHHHHCHHHHHHHHHH
T ss_pred             ECchHhhChHHHHHHHHH
Confidence            999999999988887664

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.67  E-value=5.1e-08  Score=86.49  Aligned_cols=87  Identities=13%  Similarity=0.174  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.++++.++++|++.|+++..+....+         ...+ +.++++++.+ ++||+++|+|.|++++.++++. ||+|
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~---------~~~~-~~i~~i~~~~-~ipv~v~ggI~~~~~~~~~l~~Gad~V  101 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGT---------GDNR-ALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRV  101 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTS---------CCCH-HHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcC---------CChH-HHHHHHHHhc-CCcEEEECCcCCHHHHHHHHHcCCCEE
Confidence            3578999999999999999976542222         1245 8899999998 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhh
Q psy2386         212 MLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~  230 (311)
                      ++|+.++.+|+.+.++.+.
T Consensus       102 ~lg~~~l~~p~~~~~~~~~  120 (244)
T 1vzw_A          102 NLGTAALETPEWVAKVIAE  120 (244)
T ss_dssp             EECHHHHHCHHHHHHHHHH
T ss_pred             EECchHhhCHHHHHHHHHH
Confidence            9999999999988887654

>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A

Probab=98.67  E-value=1.9e-07  Score=89.23  Aligned_cols=150  Identities=10%  Similarity=0.095  Sum_probs=118.4

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-..+++.+|+++++.|+.+.+.||..|-| .|+|....      ....++++...+++++||+++  ++++.|..
T Consensus       113 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKl-~G~~~~~~------~~~~~~~~~d~e~v~avR~avG~d~~L~vDa  185 (405)
T 3rr1_A          113 DKMRTYSWVGGDRPADVIAGMKALQAGGFDHFKL-NGCEEMGI------IDTSRAVDAAVARVAEIRSAFGNTVEFGLDF  185 (405)
T ss_dssp             SCEEEEEECCCSSHHHHHHHHHHHHHTTCCEEEE-ESCCSSSC------BCSHHHHHHHHHHHHHHHHTTGGGSEEEEEC
T ss_pred             CceeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEE-ecCCcccc------cccchhHHHHHHHHHHHHHHhCCCceEEEEC
Confidence            4567777888899999999999888899999999 89875321      112234667788999999987  67899888


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.+ ++||++.+.+.|++++
T Consensus       186 N~~~~~----~~A~~~~~~L~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~i~~~~~~  244 (405)
T 3rr1_A          186 HGRVSA----PMAKVLIKELEPYRPLFIE--------E--------PVLAEQAETYARLAAHT-HLPIAAGERMFSRFDF  244 (405)
T ss_dssp             CSCBCH----HHHHHHHHHHGGGCCSCEE--------C--------SSCCSSTHHHHHHHTTC-SSCEEECTTCCSHHHH
T ss_pred             CCCCCH----HHHHHHHHHHHhcCCCEEE--------C--------CCCcccHHHHHHHHhcC-CCCEEecCCcCCHHHH
Confidence            877764    3578899999999999883        1        11235889999999988 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCC
Q psy2386         202 DLHLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P  221 (311)
                      .++++.  ||.|++--+-.+..
T Consensus       245 ~~~l~~~a~d~v~~d~~~~GGi  266 (405)
T 3rr1_A          245 KRVLEAGGVSILQPDLSHAGGI  266 (405)
T ss_dssp             HHHHHHCCCSEECCBTTTTTHH
T ss_pred             HHHHHHhCCCeEEEChhhcCCH
Confidence            999975  99999865444433

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=98.66  E-value=1.6e-07  Score=84.95  Aligned_cols=162  Identities=14%  Similarity=0.186  Sum_probs=97.7

Q ss_pred             CeEEEecCCC--HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc----------CChHHHHHHHHHHhcccc
Q psy2386          47 PIAFQVGDNE--PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM----------TKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        47 p~~~Ql~g~~--~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll----------~~~~~~~~iv~~v~~~~~  114 (311)
                      .++.=|...+  .+...+.++.+++. +|.|||+  =|...-..+  |....          -+.+.+.++++++|+.++
T Consensus        17 ~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG--~PfsdP~ad--Gp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~   91 (271)
T 1ujp_A           17 ALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIG--LPYSDPLGD--GPVIQRASELALRKGMSVQGALELVREVRALTE   91 (271)
T ss_dssp             EEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEE--CCCCC------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCC
T ss_pred             eEEEEecCCCCChHHHHHHHHHHHhc-CCEEEEC--CCCCCcccc--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Confidence            3555554444  46677778888888 9999995  444321001  00000          245667899999998888


Q ss_pred             ceeEEEEeccCCCC-CcHHHHHHHHHHHHHcCCCEEEEe-------------------------cC-cc-----------
Q psy2386         115 IDITVKHRIGIDDI-NSYDFVRDFVGTVSSAGCRTFIVH-------------------------AR-NA-----------  156 (311)
Q Consensus       115 ~pvsvKiR~g~~~~-~~~~~~~e~~~~l~~~G~~~itvh-------------------------~R-t~-----------  156 (311)
                      +|+.+ +  ++.+. ..+ ....|++.+.++|+|.+++-                         .- +.           
T Consensus        92 ~Pii~-m--~y~n~v~~~-g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~  167 (271)
T 1ujp_A           92 KPLFL-M--TYLNPVLAW-GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHA  167 (271)
T ss_dssp             SCEEE-E--CCHHHHHHH-CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTC
T ss_pred             CCEEE-E--ecCcHHHHh-hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhC
Confidence            99877 3  21110 000 12456667777777765521                         01 10           


Q ss_pred             -------ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhC
Q psy2386         157 -------FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKN  220 (311)
Q Consensus       157 -------~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~  220 (311)
                             ...|++|.... .+....++++++++.. ++||++.|||+|++++.++ ..||||+||+++...
T Consensus       168 ~gfiy~vs~~G~TG~~~~-~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t~e~a~~~-~~ADgVIVGSAi~~~  235 (271)
T 1ujp_A          168 TGFVYAVSVTGVTGMRER-LPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA-AVADGVVVGSALVRA  235 (271)
T ss_dssp             CSCEEEECC-------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH-TTSSEEEECHHHHHH
T ss_pred             CCCEEEEecCcccCCCCC-CCccHHHHHHHHHhhc-CCCEEEEcCCCCHHHHHHh-cCCCEEEEChHHhcc
Confidence                   01234444222 2233468899999987 8999999999999999998 669999999998654

>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}

Probab=98.66  E-value=1.1e-07  Score=90.05  Aligned_cols=131  Identities=12%  Similarity=0.118  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +++++++.|+.+.+.||+.|.|++||+         |    .+++...++++++|+++  ++++.|...-+|++   .++
T Consensus       146 ~~e~~~~~a~~~~~~Gf~~iKlk~g~~---------g----~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d---~~~  209 (374)
T 3sjn_A          146 KPEDNVAIVQGLKDQGFSSIKFGGGVM---------G----DDPDTDYAIVKAVREAAGPEMEVQIDLASKWHT---CGH  209 (374)
T ss_dssp             SGGGGHHHHHHHHTTTCSEEEEECTTT---------T----SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCS---HHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCC---------C----CCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCC---HHH
Confidence            349999999998888999999999986         1    25788889999999986  67899998888883   235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      ..++++.+++.|+++|-        +        ..++.|++..+++++.. ++||.+.+.+.+++++.++++.  +|.|
T Consensus       210 A~~~~~~l~~~~i~~iE--------q--------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v  272 (374)
T 3sjn_A          210 SAMMAKRLEEFNLNWIE--------E--------PVLADSLISYEKLSRQV-SQKIAGGESLTTRYEFQEFITKSNADIV  272 (374)
T ss_dssp             HHHHHHHSGGGCCSEEE--------C--------SSCTTCHHHHHHHHHHC-SSEEEECTTCCHHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHhhhcCceEEE--------C--------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHcCCCCEE
Confidence            68899999999999883        1        12235899999999998 7999999999999999999975  9999


Q ss_pred             EEehhhhh
Q psy2386         212 MLGREAYK  219 (311)
Q Consensus       212 migRa~l~  219 (311)
                      ++--+-.+
T Consensus       273 ~~k~~~~G  280 (374)
T 3sjn_A          273 QPDITRCG  280 (374)
T ss_dssp             CCBTTTSS
T ss_pred             EeCccccC
Confidence            98654443

>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}

Probab=98.65  E-value=1.3e-07  Score=90.96  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=106.6

Q ss_pred             CCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCc
Q psy2386          54 DNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINS  130 (311)
Q Consensus        54 g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~  130 (311)
                      ..+| +.++++|+.+.+.||+.|.|+.|+                +++...++++++|+++  ++++.+...-+|+.   
T Consensus       182 ~~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~avG~d~~l~vDan~~~~~---  242 (428)
T 3bjs_A          182 GYQPKESLAEEAQEYIARGYKALKLRIGD----------------AARVDIERVRHVRKVLGDEVDILTDANTAYTM---  242 (428)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCH---
T ss_pred             CCChHHHHHHHHHHHHHCCCCEEEECCCC----------------CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCH---
Confidence            3678 999999999988999999999776                4677789999999987  57888887777754   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~--  207 (311)
                       ++..++++.+++.|+++|-        +-        .++.|++..+++++.+ + +||++.+.+.|++++.++++.  
T Consensus       243 -~eai~~~~~L~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~~iPIa~dE~~~~~~~~~~~i~~~~  304 (428)
T 3bjs_A          243 -ADARRVLPVLAEIQAGWLE--------EP--------FACNDFASYREVAKIT-PLVPIAAGENHYTRFEFGQMLDAGA  304 (428)
T ss_dssp             -HHHHHHHHHHHHTTCSCEE--------CC--------SCTTCHHHHHHHTTTC-SSSCEEECTTCCSHHHHHHHHTTCC
T ss_pred             -HHHHHHHHHHHhcCCCEEE--------CC--------CCccCHHHHHHHHHhC-CCCcEEcCCCcCCHHHHHHHHHhCC
Confidence             3578999999999999873        11        1235899999999987 7 999999999999999999975  


Q ss_pred             cCEEEEehhhhhCC
Q psy2386         208 IDGVMLGREAYKNP  221 (311)
Q Consensus       208 adgVmigRa~l~~P  221 (311)
                      +|.|++=-.-.+..
T Consensus       305 ~d~v~ik~~~~GGi  318 (428)
T 3bjs_A          305 VQVWQPDLSKCGGI  318 (428)
T ss_dssp             EEEECCBTTTSSCH
T ss_pred             CCEEEeCccccCCH
Confidence            99999854444443

>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}

Probab=98.64  E-value=6e-07  Score=85.13  Aligned_cols=149  Identities=10%  Similarity=0.123  Sum_probs=119.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      ..|+...+...+|+.+++.++...+. ||..|-+..|++               +++.-.+++++||+++  ++++.|+.
T Consensus       137 ~v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDa  201 (383)
T 3i4k_A          137 KVDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAG---------------DPAEDTRRVAELAREVGDRVSLRIDI  201 (383)
T ss_dssp             EEEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSS---------------CHHHHHHHHHHHHHTTTTTSEEEEEC
T ss_pred             eEEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            34566677888999998888766555 999999998873               4566678899999987  57899999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.. ++||.+.+.+.+++++
T Consensus       202 n~~~~~----~~A~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~  260 (383)
T 3i4k_A          202 NARWDR----RTALHYLPILAEAGVELFE--------Q--------PTPADDLETLREITRRT-NVSVMADESVWTPAEA  260 (383)
T ss_dssp             TTCSCH----HHHHHHHHHHHHTTCCEEE--------S--------CSCTTCHHHHHHHHHHH-CCEEEESTTCSSHHHH
T ss_pred             CCCCCH----HHHHHHHHHHHhcCCCEEE--------C--------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHH
Confidence            888874    3568899999999999883        1        12235899999999987 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .++++.  ||.|++--+-.+...-..++.+
T Consensus       261 ~~~i~~~~~d~v~~k~~~~GGit~~~~ia~  290 (383)
T 3i4k_A          261 LAVVKAQAADVIALKTTKHGGLLESKKIAA  290 (383)
T ss_dssp             HHHHHHTCCSEEEECTTTTTSHHHHHHHHH
T ss_pred             HHHHHcCCCCEEEEcccccCCHHHHHHHHH
Confidence            999975  9999998777777665555543

>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}

Probab=98.64  E-value=2e-07  Score=89.11  Aligned_cols=150  Identities=11%  Similarity=0.047  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc-ccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI-LMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~-Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      .+|+++++.|+.+.+.||..|.++.|+|...    ..|.. ...+++...+++++||+++  ++++.|+..-+|+.    
T Consensus       150 ~~~e~~~~~a~~~~~~G~~~~KlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDan~~~~~----  221 (404)
T 4e5t_A          150 NDADMAAEAAAKAVDQGFTAVKFDPAGAYTI----YDGHQPSLEDLERSEAFCKQIRAAVGTKADLLFGTHGQFTV----  221 (404)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCSBCCCHHHHHHHHHHHHHHHHHHGGGSEEEECCCSCBCH----
T ss_pred             CCHHHHHHHHHHHHHcCCCEEeeCCCCCCcc----cccccccHHHHHHHHHHHHHHHHHcCCCCeEEEeCCCCcCH----
Confidence            5899999999888888999999999998541    12221 1234677788999999987  57888888877764    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ++..++++.+++.|+++|.-                ..++.|++..+++++.+ ++||.+.+.+.|++++.++++.  ||
T Consensus       222 ~~A~~~~~~l~~~~i~~iEe----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d  284 (404)
T 4e5t_A          222 SGAKRLARRLEAYDPLWFEE----------------PIPPEKPEDMAEVARYT-SIPVATGERLCTKYEFSRVLETGAAS  284 (404)
T ss_dssp             HHHHHHHHHHGGGCCSEEEC----------------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHhhcCCcEEEC----------------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHHHHHHHhCCCC
Confidence            35789999999999998831                11234899999999998 7999999999999999999975  99


Q ss_pred             EEEEehhhhhCCcchHHhHh
Q psy2386         210 GVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~  229 (311)
                      .|++--+-.+...=..++.+
T Consensus       285 ~v~~d~~~~GGit~~~~ia~  304 (404)
T 4e5t_A          285 ILQMNLGRVGGLLEAKKIAA  304 (404)
T ss_dssp             EECCCTTTSSCHHHHHHHHH
T ss_pred             EEecCccccCCHHHHHHHHH
Confidence            99997766666655555544

>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*

Probab=98.64  E-value=2.3e-07  Score=88.24  Aligned_cols=138  Identities=9%  Similarity=-0.018  Sum_probs=111.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +++.+.++|+.+.+.||+.|.|+.|++               +++...++++++|+++  ++++.+...-+|+.    ++
T Consensus       165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~---------------~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~----~~  225 (392)
T 1tzz_A          165 GLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNL----ET  225 (392)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCH----HH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----HH
Confidence            899999999999889999999998872               4677788999999887  58888888877764    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHh------h
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLN------Y  207 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~------~  207 (311)
                      ..++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||++.+.+.+++++.++++      .
T Consensus       226 a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~~~~~~  288 (392)
T 1tzz_A          226 GIAYAKMLRDYPLFWYE--------EV--------GDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMRPD  288 (392)
T ss_dssp             HHHHHHHHTTSCCSEEE--------CC--------SCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCCTT
T ss_pred             HHHHHHHHHHcCCCeec--------CC--------CChhhHHHHHHHHhhC-CCCEEECCCCCCHHHHHHHHHcCCCccC
Confidence            78999999999999873        11        1235899999999988 799999999999999999996      5


Q ss_pred             cCEEEEehhhhhCCcchHHhHh
Q psy2386         208 IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       208 adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ||.|++--.-.+...=..++.+
T Consensus       289 ~d~v~ik~~~~GGit~~~~i~~  310 (392)
T 1tzz_A          289 RDWLQFDCALSYGLCEYQRTLE  310 (392)
T ss_dssp             TCEECCCTTTTTCHHHHHHHHH
T ss_pred             CcEEEECccccCCHHHHHHHHH
Confidence            9999997666555544444443

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=98.62  E-value=2.4e-07  Score=80.59  Aligned_cols=146  Identities=11%  Similarity=0.075  Sum_probs=102.5

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccc---------ccCcccCcccCChHHHHHH----------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV---------QNGFFGAILMTKPLLVSDC----------  105 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v---------~~~~~G~~Ll~~~~~~~~i----------  105 (311)
                      +.|+++-+-+.+++++.+.++.+.+.|++.|++++-+|....         ...++|. ++ +.+.+...          
T Consensus        12 ~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~~~~~~gag~-vl-~~d~~~~A~~~GAd~v~~   89 (207)
T 2yw3_A           12 ESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGT-VR-SPKEAEAALEAGAAFLVS   89 (207)
T ss_dssp             HHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTTSSCEEEEES-CC-SHHHHHHHHHHTCSEEEE
T ss_pred             hCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhCCCCEEEeCe-Ee-eHHHHHHHHHcCCCEEEc
Confidence            468999999999999999999999999999999998885532         1224454 32 33443333          


Q ss_pred             -------HHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386         106 -------IKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus       106 -------v~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                             ++..++ .++|+..-+.       +   ..+ +..+.+.|+|+|.+++-.. ..             -.++++
T Consensus        90 ~~~d~~v~~~~~~-~g~~~i~G~~-------t---~~e-~~~A~~~Gad~v~~fpa~~-~g-------------G~~~lk  143 (207)
T 2yw3_A           90 PGLLEEVAALAQA-RGVPYLPGVL-------T---PTE-VERALALGLSALKFFPAEP-FQ-------------GVRVLR  143 (207)
T ss_dssp             SSCCHHHHHHHHH-HTCCEEEEEC-------S---HHH-HHHHHHTTCCEEEETTTTT-TT-------------HHHHHH
T ss_pred             CCCCHHHHHHHHH-hCCCEEecCC-------C---HHH-HHHHHHCCCCEEEEecCcc-cc-------------CHHHHH
Confidence                   233322 3444433211       1   123 4555678999999975210 00             357789


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +++..+|++||++.|||+ ++++.++++. +++|.+|++++.
T Consensus       144 ~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~  184 (207)
T 2yw3_A          144 AYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ  184 (207)
T ss_dssp             HHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS
T ss_pred             HHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC
Confidence            999888789999999997 7999999987 999999999876

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=98.62  E-value=8.2e-08  Score=84.81  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.++++.+++.|+++|+++..+..  +.       ..+.+++.++++++.+ ++||+++|+|.+++++.++++. ||+|
T Consensus        34 ~~~~~a~~~~~~G~d~i~v~~~~~~--~~-------~~~~~~~~i~~i~~~~-~ipvi~~g~i~~~~~~~~~~~~Gad~V  103 (253)
T 1h5y_A           34 DPVEMAVRYEEEGADEIAILDITAA--PE-------GRATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKV  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCEEEEECCCC--TT-------THHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             cHHHHHHHHHHcCCCEEEEEeCCcc--cc-------CCcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            3578999999999999999866531  10       1124678899999998 8999999999999999998876 9999


Q ss_pred             EEehhhhhCCcchHHhHhh
Q psy2386         212 MLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~  230 (311)
                      ++|+.++.+|+++.++.+.
T Consensus       104 ~i~~~~~~~~~~~~~~~~~  122 (253)
T 1h5y_A          104 SVNTAAVRNPQLVALLARE  122 (253)
T ss_dssp             EESHHHHHCTHHHHHHHHH
T ss_pred             EEChHHhhCcHHHHHHHHH
Confidence            9999999999988877654

>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*

Probab=98.62  E-value=7.6e-07  Score=84.72  Aligned_cols=154  Identities=8%  Similarity=0.000  Sum_probs=121.5

Q ss_pred             CCCCeEEEec---CCCHHHHHHHH-HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--ccee
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSA-KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDI  117 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa-~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pv  117 (311)
                      +..|+-..+.   ..+|+++++.+ +...+.||..|-+..|++.+.         ...+++.-.++++++|+++  ++++
T Consensus       124 ~~v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~---------~~~~~~~d~~~v~avR~a~g~~~~l  194 (393)
T 4dwd_A          124 TRLPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTR---------CDVDIPGDIAKARAVRELLGPDAVI  194 (393)
T ss_dssp             SEEEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTC---------CSCCHHHHHHHHHHHHHHHCTTCCE
T ss_pred             CceeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcc---------cccCHHHHHHHHHHHHHHhCCCCeE
Confidence            3456667663   36899999988 887778999999999997542         3467888889999999987  6899


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                      .|...-+|+.    ++..++++.+++.|+++|-        +        ..++.|++..+++++.. ++||.+.+.+.+
T Consensus       195 ~vDaN~~~~~----~~A~~~~~~L~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~  253 (393)
T 4dwd_A          195 GFDANNGYSV----GGAIRVGRALEDLGYSWFE--------E--------PVQHYHVGAMGEVAQRL-DITVSAGEQTYT  253 (393)
T ss_dssp             EEECTTCCCH----HHHHHHHHHHHHTTCSEEE--------C--------CSCTTCHHHHHHHHHHC-SSEEEBCTTCCS
T ss_pred             EEECCCCCCH----HHHHHHHHHHHhhCCCEEE--------C--------CCCcccHHHHHHHHhhC-CCCEEecCCcCC
Confidence            9998888874    3578999999999999883        1        11235899999999998 799999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++.++++. +|.|++--+-.+...=..++
T Consensus       254 ~~~~~~~i~~~~d~v~~k~~~~GGit~~~~i  284 (393)
T 4dwd_A          254 LQALKDLILSGVRMVQPDIVKMGGITGMMQC  284 (393)
T ss_dssp             HHHHHHHHHHTCCEECCCTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEeCccccCCHHHHHHH
Confidence            9999999866 99999866555544433333

>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A

Probab=98.62  E-value=2.4e-07  Score=88.37  Aligned_cols=165  Identities=10%  Similarity=0.031  Sum_probs=124.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc------cCcccCccc--CChHHHHHHHHHHhccc--
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ------NGFFGAILM--TKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~------~~~~G~~Ll--~~~~~~~~iv~~v~~~~--  113 (311)
                      +..|+-..+.+.+|+++++.++...+.||..|-+..|++....-      ....|..+.  ++++...+++++||+++  
T Consensus       121 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~v~avR~a~G~  200 (401)
T 3sbf_A          121 DAIPVYTHATSDTMEGIYDLVEGFLEKGYKHIRCQLGFYGGVPTDLHTTQNPTEGSYYDQDQYMDNTLTMFKSLREKYGN  200 (401)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHHHTTCCEEEEEESCCCSCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchHHHHHHHHHHHHHHHHcCC
Confidence            44566667788999999999998888999999999998632110      001122221  12567788899999987  


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      ++++.|...-+|+.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.+ ++||.+.+
T Consensus       201 d~~l~vDan~~~~~----~~A~~~~~~L~~~~i~~iE--------q--------P~~~~~~~~~~~l~~~~-~iPIa~dE  259 (401)
T 3sbf_A          201 QFHILHDVHERLFP----NQAIQFAKEVEQYKPYFIE--------D--------ILPPNQTEWLDNIRSQS-SVSLGLGE  259 (401)
T ss_dssp             SSEEEEECTTCSCH----HHHHHHHHHHGGGCCSCEE--------C--------SSCTTCGGGHHHHHTTC-CCCEEECT
T ss_pred             CCEEEEECCCCCCH----HHHHHHHHHHHhcCCCEEE--------C--------CCChhHHHHHHHHHhhC-CCCEEeCC
Confidence            68999998888874    3578999999999999883        1        11235788899999988 79999999


Q ss_pred             CCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         194 GIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       194 gI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+.+++++.++++.  ||.|++--+-.+...=..++.+
T Consensus       260 ~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit~~~kia~  297 (401)
T 3sbf_A          260 LFNNPEEWKSLIANRRIDFIRCHVSQIGGITPALKLGH  297 (401)
T ss_dssp             TCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHH
T ss_pred             ccCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHH
Confidence            99999999999975  9999998777776665555543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.61  E-value=7.3e-07  Score=87.08  Aligned_cols=128  Identities=18%  Similarity=0.188  Sum_probs=90.8

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      .+.++.+.+.|+|.|.+...           +    .+++...+.++++++.+ ++|+.++-=   .       ..+.++
T Consensus       235 ~~~a~~l~~~G~d~ivi~~a-----------~----g~~~~~~~~i~~l~~~~p~~pvi~G~v---~-------t~~~a~  289 (491)
T 1zfj_A          235 FERAEALFEAGADAIVIDTA-----------H----GHSAGVLRKIAEIRAHFPNRTLIAGNI---A-------TAEGAR  289 (491)
T ss_dssp             HHHHHHHHHHTCSEEEECCS-----------C----TTCHHHHHHHHHHHHHCSSSCEEEEEE---C-------SHHHHH
T ss_pred             HHHHHHHHHcCCCeEEEeee-----------c----CcchhHHHHHHHHHHHCCCCcEeCCCc---c-------CHHHHH
Confidence            44566677789999998741           1    13445667788888887 889874411   1       136678


Q ss_pred             HHHHcCCCEEEEec------CccccccCCCCcCCCCCcCcHHHHHHHHH---hCCCCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386         140 TVSSAGCRTFIVHA------RNAFLKKLNPKQNRKIPILKYNFVYNLKK---DFPELEIIINGGIKTKKEIDLHLNY-ID  209 (311)
Q Consensus       140 ~l~~~G~~~itvh~------Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~---~~~~ipvi~nGgI~s~~da~~~l~~-ad  209 (311)
                      .+.++|++.|.+..      .+....|..        ...++.+.++.+   .. ++|||+.|||++++|+.++++. ||
T Consensus       290 ~~~~~Gad~I~vg~g~g~~~~tr~~~~~~--------~p~~~~l~~~~~~~~~~-~ipvia~GGi~~~~di~kal~~GA~  360 (491)
T 1zfj_A          290 ALYDAGVDVVKVGIGPGSICTTRVVAGVG--------VPQVTAIYDAAAVAREY-GKTIIADGGIKYSGDIVKALAAGGN  360 (491)
T ss_dssp             HHHHTTCSEEEECSSCCTTBCHHHHTCCC--------CCHHHHHHHHHHHHHHT-TCEEEEESCCCSHHHHHHHHHTTCS
T ss_pred             HHHHcCCCEEEECccCCcceEEeeecCCC--------CCcHHHHHHHHHHHhhc-CCCEEeeCCCCCHHHHHHHHHcCCc
Confidence            88999999998841      111122221        135666666665   44 7999999999999999999986 99


Q ss_pred             EEEEehhhhhCCc
Q psy2386         210 GVMLGREAYKNPF  222 (311)
Q Consensus       210 gVmigRa~l~~P~  222 (311)
                      +||+||+++..+.
T Consensus       361 ~v~vG~~~~~~~e  373 (491)
T 1zfj_A          361 AVMLGSMFAGTDE  373 (491)
T ss_dssp             EEEESTTTTTBSS
T ss_pred             ceeeCHHhhCCCc
Confidence            9999999987554

>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A

Probab=98.61  E-value=2.2e-07  Score=87.31  Aligned_cols=146  Identities=8%  Similarity=0.028  Sum_probs=117.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-.+++..+|+.+++.++.+.+.||..|.+++||                +++.-.+.++++|+++  ++++.|+..
T Consensus       129 ~v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~----------------~~~~d~~~v~avR~~~g~~~~l~vDan  192 (356)
T 3ro6_B          129 SLPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG----------------DEEQDFERLRRLHETLAGRAVVRVDPN  192 (356)
T ss_dssp             CEEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS----------------CHHHHHHHHHHHHHHHTTSSEEEEECT
T ss_pred             ceeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC----------------CHHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4466678888999999999998888999999999886                3566677888998887  678999988


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+..    +..++++.+++.|+.+|-        +        ..++.||+..+++++.. ++||.+.+.+.+++|+.
T Consensus       193 ~~~~~~----~a~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~  251 (356)
T 3ro6_B          193 QSYDRD----GLLRLDRLVQELGIEFIE--------Q--------PFPAGRTDWLRALPKAI-RRRIAADESLLGPADAF  251 (356)
T ss_dssp             TCCCHH----HHHHHHHHHHHTTCCCEE--------C--------CSCTTCHHHHHTSCHHH-HHTEEESTTCCSHHHHH
T ss_pred             CCCCHH----HHHHHHHHHHhcCCCEEE--------C--------CCCCCcHHHHHHHHhcC-CCCEEeCCcCCCHHHHH
Confidence            888743    567899999999999883        1        11235899999999887 69999999999999999


Q ss_pred             HHHh---hcCEEEEehhhhhCCcchHHh
Q psy2386         203 LHLN---YIDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       203 ~~l~---~adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++   .||.|++--+-.+...=..++
T Consensus       252 ~~~~~~~~~d~v~~k~~~~GGit~~~~i  279 (356)
T 3ro6_B          252 ALAAPPAACGIFNIKLMKCGGLAPARRI  279 (356)
T ss_dssp             HHHSSSCSCSEEEECHHHHCSHHHHHHH
T ss_pred             HHHhcCCcCCEEEEcccccCCHHHHHHH
Confidence            9997   599999987666654433333

>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*

Probab=98.60  E-value=2.1e-07  Score=89.26  Aligned_cols=164  Identities=7%  Similarity=-0.022  Sum_probs=122.2

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc----------cc-------CcccCChHHHHHHH
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF----------FG-------AILMTKPLLVSDCI  106 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~----------~G-------~~Ll~~~~~~~~iv  106 (311)
                      +..|+-..+.+.+|+++++.|+...+.||..|-+..|+|.....-+.          .|       -...++++...+++
T Consensus       131 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~k~G~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~d~~~v  210 (418)
T 3r4e_A          131 DGIMVYGHANGSDIAETVEAVGHYIDMGYKAIRAQTGVPGIKDAYGVGRGKLYYEPADASLPSVTGWDTRKALNYVPKLF  210 (418)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTC------------------CCCCEEEECHHHHHHHHHHHH
T ss_pred             CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence            44566666778999999999998888999999999999853221000          00       01112356778899


Q ss_pred             HHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         107 KAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       107 ~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      ++||+++  ++++.|...-+|+.    ++..++++.|++.|+++|.        +        ..++.|++..+++++.+
T Consensus       211 ~avR~a~G~d~~l~vDaN~~~~~----~~A~~~~~~L~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~  270 (418)
T 3r4e_A          211 EELRKTYGFDHHLLHDGHHRYTP----QEAANLGKMLEPYQLFWLE--------D--------CTPAENQEAFRLVRQHT  270 (418)
T ss_dssp             HHHHHHHCSSSEEEEECTTCSCH----HHHHHHHHHHGGGCCSEEE--------S--------CSCCSSGGGGHHHHHHC
T ss_pred             HHHHHHcCCCCeEEEeCCCCCCH----HHHHHHHHHHHhhCCCEEE--------C--------CCCccCHHHHHHHHhcC
Confidence            9999987  67899988888864    3578999999999999883        1        11234788889999998


Q ss_pred             CCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         185 PELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       185 ~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                       ++||++.+.+.|++++.++++.  ||.|++--+-.+...=..++.
T Consensus       271 -~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~k~~~~GGit~~~~ia  315 (418)
T 3r4e_A          271 -VTPLAVGEIFNTIWDAKDLIQNQLIDYIRATVVGAGGLTHLRRIA  315 (418)
T ss_dssp             -CSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHH
T ss_pred             -CCCEEEcCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHH
Confidence             7999999999999999999975  999999766655554444444

>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*

Probab=98.58  E-value=7.2e-07  Score=83.66  Aligned_cols=147  Identities=11%  Similarity=0.095  Sum_probs=117.6

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~  123 (311)
                      .|+...+...+|+.+++.++...+.||..|.++.|++                ++.-.++++++|+++  ++++.|...-
T Consensus       129 v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~----------------~~~d~~~v~avR~a~g~~~~l~vDan~  192 (354)
T 3jva_A          129 VITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG----------------IEADIARVKAIREAVGFDIKLRLDANQ  192 (354)
T ss_dssp             EECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred             eeeeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC----------------HHHHHHHHHHHHHHcCCCCeEEEECCC
Confidence            3444667778999999999888889999999998874                344567888888876  5788898888


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.. ++||.+.+.+.+++++.+
T Consensus       193 ~~~~----~~a~~~~~~L~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~  251 (354)
T 3jva_A          193 AWTP----KDAVKAIQALADYQIELVE--------Q--------PVKRRDLEGLKYVTSQV-NTTIMADESCFDAQDALE  251 (354)
T ss_dssp             CSCH----HHHHHHHHHTTTSCEEEEE--------C--------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHHHH
T ss_pred             CCCH----HHHHHHHHHHHhcCCCEEE--------C--------CCChhhHHHHHHHHHhC-CCCEEEcCCcCCHHHHHH
Confidence            8864    3567899999999988883        1        11235899999999998 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++.  +|.|++--+-.+...=..++.+
T Consensus       252 ~l~~~~~d~v~~k~~~~GGit~~~~i~~  279 (354)
T 3jva_A          252 LVKKGTVDVINIKLMKCGGIHEALKINQ  279 (354)
T ss_dssp             HHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred             HHHcCCCCEEEECchhcCCHHHHHHHHH
Confidence            9975  9999998888777765555544

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=98.57  E-value=1e-06  Score=79.85  Aligned_cols=139  Identities=17%  Similarity=0.117  Sum_probs=92.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEE--eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--cCCCCCc
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEIN--LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDINS  130 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~Id--iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--g~~~~~~  130 (311)
                      ...+.-..-++.+.+.|+|.||  ||            .|+.+-.+.+.+.+-+.+|++.++-| .+|+=+  +.-.   
T Consensus       123 ~~~~~Kv~Ea~~Ai~~GAdEIDmVIN------------ig~lk~g~~~~v~~eI~~V~~a~~~~-~lKVIlEt~~Lt---  186 (288)
T 3oa3_A          123 YSTDQKVSEAKRAMQNGASELDMVMN------------YPWLSEKRYTDVFQDIRAVRLAAKDA-ILKVILETSQLT---  186 (288)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECC------------HHHHHTTCHHHHHHHHHHHHHHTTTS-EEEEECCGGGCC---
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEee------------hhhhcCCcHHHHHHHHHHHHHHhcCC-CceEEEECCCCC---
Confidence            3444445455667788999999  56            44444567888898899999988666 366543  3222   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      .++....++...++|+|+|--.      .||++.  .. .+.|.+.++++.+.. ++++|.+.|||+|.+|+.++++. |
T Consensus       187 ~eei~~A~~ia~eaGADfVKTS------TGf~~~--GA-T~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA  257 (288)
T 3oa3_A          187 ADEIIAGCVLSSLAGADYVKTS------TGFNGP--GA-SIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGA  257 (288)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECC------CSSSSC--CC-CHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEcC------CCCCCC--CC-CHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCC
Confidence            2356677888889999999543      233211  00 112555666665421 36999999999999999999987 9


Q ss_pred             C--EEEEehhhh
Q psy2386         209 D--GVMLGREAY  218 (311)
Q Consensus       209 d--gVmigRa~l  218 (311)
                      +  |+..|+.++
T Consensus       258 ~RiGtS~g~~I~  269 (288)
T 3oa3_A          258 ERLGASAGVKIV  269 (288)
T ss_dssp             SEEEESCHHHHH
T ss_pred             ceeehhhHHHHH
Confidence            9  555555543

>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}

Probab=98.55  E-value=5.2e-07  Score=86.38  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc-ccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI-LMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~-Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      .+|+++++.|+.+.+.||..|-++.|+|...    ..|.. ...+++...+++++||+++  ++++.|...-+|+.    
T Consensus       143 ~~~e~~~~~a~~~~~~G~~~iKlK~g~~~~~----~~g~~~~~~~~~~d~~~v~avR~a~G~d~~l~vDaN~~~~~----  214 (412)
T 4e4u_A          143 DDPDLAAECAAENVKLGFTAVKFDPAGPYTA----YSGHQLSLEVLDRCELFCRRVREAVGSKADLLFGTHGQMVP----  214 (412)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECCSCCCBT----TCCBCCCHHHHHHHHHHHHHHHHHHTTSSEEEECCCSCBCH----
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCcc----ccccccchhhHHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----
Confidence            5899999999988888999999999988542    11211 1123677788999999987  57888888777764    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ++..++++.+++.|+++|.-                ..++.|++..+++++.+ ++||.+.+.+.|++++.++++.  +|
T Consensus       215 ~~A~~~~~~L~~~~i~~iEe----------------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d  277 (412)
T 4e4u_A          215 SSAIRLAKRLEKYDPLWFEE----------------PVPPGQEEAIAQVAKHT-SIPIATGERLTTKYEFHKLLQAGGAS  277 (412)
T ss_dssp             HHHHHHHHHHGGGCCSEEEC----------------CSCSSCHHHHHHHHHTC-SSCEEECTTCCHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHhhhcCCcEEEC----------------CCChhhHHHHHHHHhhC-CCCEEecCccCCHHHHHHHHHcCCCC
Confidence            35788999999999998831                11235899999999998 7999999999999999999975  99


Q ss_pred             EEEEehhhhhCCcchHHhHh
Q psy2386         210 GVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~  229 (311)
                      .|++--+-.+...=..++.+
T Consensus       278 ~v~~d~~~~GGit~~~kia~  297 (412)
T 4e4u_A          278 ILQLNVARVGGLLEAKKIAT  297 (412)
T ss_dssp             EECCCTTTTTSHHHHHHHHH
T ss_pred             EEEeCccccCCHHHHHHHHH
Confidence            99997666666554445443

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=98.54  E-value=8.8e-07  Score=78.62  Aligned_cols=148  Identities=12%  Similarity=0.100  Sum_probs=100.2

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE------EeccCCCC----Cc
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK------HRIGIDDI----NS  130 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK------iR~g~~~~----~~  130 (311)
                      .++++.+.+.|+|.|+|..+              .--+.+.+.++++++|+ .++|+.+=      +..|.|.-    -.
T Consensus        23 ~~~~~~l~~~GaD~ielG~S--------------~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i~~G~dg~iiPdLp   87 (240)
T 1viz_A           23 DEQLEILCESGTDAVIIGGS--------------DGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAIVPGFDLYFIPSVL   87 (240)
T ss_dssp             HHHHHHHHTSCCSEEEECC------------------CHHHHHHHHHHHTT-SSSCEEEECSCGGGCCSCCSEEEEEEET
T ss_pred             HHHHHHHHHcCCCEEEECCC--------------CCCCHHHHHHHHHHhhC-cCCCEEEecCccccccCCCCEEEEcccC
Confidence            34467778899999999861              12356779999999998 78998751      11222200    00


Q ss_pred             HHHHHHH-----HHHHHHcC-----CCEEE----E-ecCcc------------------c-cc------cC-----CCCc
Q psy2386         131 YDFVRDF-----VGTVSSAG-----CRTFI----V-HARNA------------------F-LK------KL-----NPKQ  165 (311)
Q Consensus       131 ~~~~~e~-----~~~l~~~G-----~~~it----v-h~Rt~------------------~-~~------G~-----~g~~  165 (311)
                      +++..++     ...+.+.|     .+.|-    + ++.+.                  + ..      ++     +|. 
T Consensus        88 ~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s~G~-  166 (240)
T 1viz_A           88 NSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEYSGV-  166 (240)
T ss_dssp             TBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEECTTS-
T ss_pred             cccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeCCCc-
Confidence            0011233     45677888     77664    3 22110                  0 00      11     221 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCc-chHHhHh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF-LMSNFDL  229 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~-i~~~~~~  229 (311)
                           +.+.++++++++.++++||+..|||+|+++++++++.||+|.+|+++..+|. ++++++.
T Consensus       167 -----~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~~~~~gAd~VIVGSa~v~~~~~~~~~v~~  226 (240)
T 1viz_A          167 -----LGDIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFDRALKTVAA  226 (240)
T ss_dssp             -----CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHCHHHHHTHHHH
T ss_pred             -----cChHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCCEEEEChHHHhCHHHHHHHHHH
Confidence                 3578999999998646999999999999999999888999999999999999 8888653

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=98.54  E-value=1.7e-06  Score=77.92  Aligned_cols=146  Identities=13%  Similarity=0.096  Sum_probs=94.2

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEE
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvK  120 (311)
                      ..+++.+..+ .++++....++.+.++ |.+.|.++.- |      +.  -.+   ++...++++.+++.+  ++.+..-
T Consensus        65 ~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i~l~i~-~------d~--~~~---~~e~~~~~~~a~~~~~~g~~vi~~  132 (264)
T 1xm3_A           65 KYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVI-G------CS--RSL---LPDPVETLKASEQLLEEGFIVLPY  132 (264)
T ss_dssp             GSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCB-C------CT--TTC---CBCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEcCCccccCCHHHHHHHHHHHHHcCCCCeEEEeec-C------CC--ccc---ccchHHHHHHHHHHHCCCeEEEEE
Confidence            3567778877 7888877777778776 4567776641 1      00  001   123446666666643  3333211


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                       -  ..  +     .+.++.+++.|+++|...+..      .|..   .+..+++.++++++.. ++||++-|||.+++|
T Consensus       133 -~--~~--~-----~~~a~~~~~~gad~v~~~~~~------~Gt~---~~~~~~~~l~~i~~~~-~iPviv~gGI~t~ed  192 (264)
T 1xm3_A          133 -T--SD--D-----VVLARKLEELGVHAIMPGASP------IGSG---QGILNPLNLSFIIEQA-KVPVIVDAGIGSPKD  192 (264)
T ss_dssp             -E--CS--C-----HHHHHHHHHHTCSCBEECSSS------TTCC---CCCSCHHHHHHHHHHC-SSCBEEESCCCSHHH
T ss_pred             -c--CC--C-----HHHHHHHHHhCCCEEEECCcc------cCCC---CCCCCHHHHHHHHhcC-CCCEEEEeCCCCHHH
Confidence             1  11  1     245788899999999331221      1110   0113578899999876 899999999999999


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCc
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.++++. ||||+||++++..+.
T Consensus       193 a~~~~~~GAdgViVGSAi~~a~d  215 (264)
T 1xm3_A          193 AAYAMELGADGVLLNTAVSGADD  215 (264)
T ss_dssp             HHHHHHTTCSEEEESHHHHTSSS
T ss_pred             HHHHHHcCCCEEEEcHHHhCCCC
Confidence            9999987 999999999876544

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=98.53  E-value=3.8e-06  Score=74.97  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      -+.|+.-|=|.-++-+..+    +..+|+|+|=|++.+               .+.+.+.++++..++ .+..+.|-+..
T Consensus       100 v~lPvLrKDfi~~~~qi~e----a~~~GAD~ilLi~a~---------------l~~~~l~~l~~~a~~-lGl~~lvEv~~  159 (251)
T 1i4n_A          100 TCRPILAKDFYIDTVQVKL----ASSVGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEVHS  159 (251)
T ss_dssp             CCSCEEEECCCCSTHHHHH----HHHTTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEECS
T ss_pred             CCCCEEEeeCCCCHHHHHH----HHHcCCCEEEEeccc---------------CCHHHHHHHHHHHHH-cCCeEEEEeCC
Confidence            4679999989888876554    457899999999543               233678888888777 58888786652


Q ss_pred             cCCCCCcHHHHHHHHHHHHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da  201 (311)
                                 .+=++++.+. |++.|-++.|.  +.++         ..|++...++.+.+| ++++|+-|||.|++|+
T Consensus       160 -----------~eE~~~A~~l~g~~iIGinnr~--l~t~---------~~d~~~~~~l~~~ip~~~~vIaEsGI~t~edv  217 (251)
T 1i4n_A          160 -----------REDLEKVFSVIRPKIIGINTRD--LDTF---------EIKKNVLWELLPLVPDDTVVVAESGIKDPREL  217 (251)
T ss_dssp             -----------HHHHHHHHTTCCCSEEEEECBC--TTTC---------CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGH
T ss_pred             -----------HHHHHHHHhcCCCCEEEEeCcc--cccC---------CCCHHHHHHHHHhCCCCCEEEEeCCCCCHHHH
Confidence                       1225667888 99999999986  3332         257888888888776 4899999999999999


Q ss_pred             HHHHhhcCEEEEehhhhhCCcchHHhHhhh
Q psy2386         202 DLHLNYIDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       202 ~~~l~~adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .++.+.+|+|.||.+++..+..-..+++.+
T Consensus       218 ~~~~~~a~avLVG~aimr~~d~~~~~~~l~  247 (251)
T 1i4n_A          218 KDLRGKVNAVLVGTSIMKAENPRRFLEEMR  247 (251)
T ss_dssp             HHHTTTCSEEEECHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHhCCEEEEcHHHcCCcCHHHHHHHHH
Confidence            999866999999999999888777666543

>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A

Probab=98.52  E-value=5.3e-07  Score=87.01  Aligned_cols=127  Identities=12%  Similarity=0.078  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      +.++++++++|+.+.+.||+.|.|+.|+                +++...+++++||+++  ++++.+...-+|+.    
T Consensus       196 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~----------------~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~----  255 (441)
T 2hxt_A          196 GYSDEKLVRLAKEAVADGFRTIKLKVGA----------------NVQDDIRRCRLARAAIGPDIAMAVDANQRWDV----  255 (441)
T ss_dssp             TSCHHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCH----
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEccCC----------------CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCH----
Confidence            4589999999999999999999999773                3677788899999987  57888887777754    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ++..++++.+++.|+++|-        +-        .++.|++..+++++.+..+||++.+.+.+++++.++++.  ||
T Consensus       256 ~~a~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d  319 (441)
T 2hxt_A          256 GPAIDWMRQLAEFDIAWIE--------EP--------TSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVD  319 (441)
T ss_dssp             HHHHHHHHTTGGGCCSCEE--------CC--------SCTTCHHHHHHHHHHHTTSCEEECTTCCSHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHHHhcCCCeee--------CC--------CCHHHHHHHHHHHhhCCCCCEEEeCCcCCHHHHHHHHHcCCCC
Confidence            3578999999999999872        10        123589999999988624999999999999999999975  99


Q ss_pred             EEEEehh
Q psy2386         210 GVMLGRE  216 (311)
Q Consensus       210 gVmigRa  216 (311)
                      .|++--.
T Consensus       320 ~v~ik~~  326 (441)
T 2hxt_A          320 LIQIDAA  326 (441)
T ss_dssp             EECCCTT
T ss_pred             EEEeCcc
Confidence            9998543

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=98.49  E-value=2.2e-07  Score=83.28  Aligned_cols=87  Identities=13%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.++++.+++.|++.|.++..+.. ...        ...+++.++++++.+ ++||+++|||.+++++.++++. ||+|
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~-~~~--------~g~~~~~i~~i~~~~-~iPvi~~ggi~~~~~i~~~~~~Gad~v  100 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRD-GTK--------SGYDTEMIRFVRPLT-TLPIIASGGAGKMEHFLEAFLAGADKA  100 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTS-SCS--------SCCCHHHHHHHGGGC-CSCEEEESCCCSTHHHHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcc-cCC--------CcccHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCcHh
Confidence            3679999999999999999766531 111        124789999999987 8999999999999999999977 9999


Q ss_pred             EEehhhh-h--CCcchHHhHh
Q psy2386         212 MLGREAY-K--NPFLMSNFDL  229 (311)
Q Consensus       212 migRa~l-~--~P~i~~~~~~  229 (311)
                      ++|++++ .  +|..+.++.+
T Consensus       101 ~lg~~~~~~~~~~~~~~~~~~  121 (266)
T 2w6r_A          101 LAASVFHFREIDMRELKEYLK  121 (266)
T ss_dssp             ECCCCC------CHHHHHHCC
T ss_pred             hhhHHHHhCCCCHHHHHHHHH
Confidence            9999999 5  8998888754

>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*

Probab=98.48  E-value=1e-06  Score=82.85  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             CCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          46 HPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      .|+...++. .+++.+.++|+.+.+.||+.|.|+.|                  |+...++++++|+++  ++++.+...
T Consensus       130 ~~~~~~~g~~~~~~~~~~~a~~~~~~Gf~~vKik~~------------------~~~~~e~v~avr~~~g~~~~l~vDan  191 (368)
T 1sjd_A          130 VPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE------------------PGWDVEPVRAVRERFGDDVLLQVDAN  191 (368)
T ss_dssp             EEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB------------------TTBSHHHHHHHHHHHCTTSEEEEECT
T ss_pred             ccceEEeeCCCCHHHHHHHHHHHHHhCccEEEEecC------------------chhHHHHHHHHHHhcCCCceEEEecc
Confidence            345455543 48999999999988899999999853                  233457778888776  477777777


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++ .++++.+++.|+++|-        +-        .++.||+..+++++.+ ++||.+.+.+.+++++.
T Consensus       192 ~~~~~----~~-~~~~~~l~~~~i~~iE--------~P--------~~~~~~~~~~~l~~~~-~ipIa~dE~~~~~~~~~  249 (368)
T 1sjd_A          192 TAYTL----GD-APQLARLDPFGLLLIE--------QP--------LEEEDVLGHAELARRI-QTPICLDESIVSARAAA  249 (368)
T ss_dssp             TCCCG----GG-HHHHHTTGGGCCSEEE--------CC--------SCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHH
T ss_pred             CCCCH----HH-HHHHHHHHhcCCCeEe--------CC--------CChhhHHHHHHHHHhC-CCCEEECCCcCCHHHHH
Confidence            67764    25 7889999999999873        11        1235899999999988 79999999999999999


Q ss_pred             HHHhh--cCEEEEe
Q psy2386         203 LHLNY--IDGVMLG  214 (311)
Q Consensus       203 ~~l~~--adgVmig  214 (311)
                      ++++.  ||.|++=
T Consensus       250 ~~i~~~~~d~v~ik  263 (368)
T 1sjd_A          250 DAIKLGAVQIVNIK  263 (368)
T ss_dssp             HHHHTTCCSEEEEC
T ss_pred             HHHHcCCCCEEEec
Confidence            99975  9999994

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.48  E-value=1.8e-06  Score=77.30  Aligned_cols=142  Identities=16%  Similarity=0.217  Sum_probs=101.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+..+=|=.|+.+..+    +..+|+|+|-|..              ..+.  +.+.++++..++ .++.+.|-+.. 
T Consensus       106 ~lPvl~kdfI~d~~qi~~----a~~~GAD~VlL~~--------------~~l~--~~l~~l~~~a~~-lGl~~lvev~~-  163 (254)
T 1vc4_A          106 DLPLLRKDFVVDPFMLEE----ARAFGASAALLIV--------------ALLG--ELTGAYLEEARR-LGLEALVEVHT-  163 (254)
T ss_dssp             CSCEEEESCCCSHHHHHH----HHHTTCSEEEEEH--------------HHHG--GGHHHHHHHHHH-HTCEEEEEECS-
T ss_pred             CCCEEECCcCCCHHHHHH----HHHcCCCEEEECc--------------cchH--HHHHHHHHHHHH-CCCeEEEEECC-
Confidence            567776666677776533    4578999999862              2233  567777776555 35444433331 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKE  200 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~d  200 (311)
                               ..| +..+.+.|++.|-++.|..  ..+         ..|++...++.+.+|    ++|+++.|||.|++|
T Consensus       164 ---------~~E-~~~a~~~gad~IGvn~~~l--~~~---------~~dl~~~~~L~~~i~~~~~~~~vIAegGI~s~~d  222 (254)
T 1vc4_A          164 ---------ERE-LEIALEAGAEVLGINNRDL--ATL---------HINLETAPRLGRLARKRGFGGVLVAESGYSRKEE  222 (254)
T ss_dssp             ---------HHH-HHHHHHHTCSEEEEESBCT--TTC---------CBCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHH
T ss_pred             ---------HHH-HHHHHHcCCCEEEEccccC--cCC---------CCCHHHHHHHHHhCccccCCCeEEEEcCCCCHHH
Confidence                     123 3467788999999998863  221         246777777777654    689999999999999


Q ss_pred             HHHHHhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.++.+++|||.||++++..+..-..+++
T Consensus       223 v~~l~~Ga~gvlVGsAl~~~~d~~~~~~~  251 (254)
T 1vc4_A          223 LKALEGLFDAVLIGTSLMRAPDLEAALRE  251 (254)
T ss_dssp             HHTTTTTCSEEEECHHHHTSSCHHHHHHH
T ss_pred             HHHHHcCCCEEEEeHHHcCCCCHHHHHHH
Confidence            99998889999999999999987766654

>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}

Probab=98.47  E-value=6.9e-07  Score=85.79  Aligned_cols=165  Identities=10%  Similarity=0.026  Sum_probs=123.3

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc------cCcccCccc--CChHHHHHHHHHHhccc--
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ------NGFFGAILM--TKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~------~~~~G~~Ll--~~~~~~~~iv~~v~~~~--  113 (311)
                      +..|+-..+.+.+|+++++.++...+.||..|-+..|++.....      ....|..+.  ++++...+++++||+++  
T Consensus       142 ~~v~~y~~~~~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~  221 (422)
T 3tji_A          142 DAIPAYSHASGETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGW  221 (422)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CeEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCC
Confidence            34556556778999999999998888999999999998532100      001111111  12466778899999987  


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      ++++.|...-+|+.    ++..++++.+++.|+.+|-        +        ..++.|++..+++++.+ ++||.+.+
T Consensus       222 d~~L~vDaN~~~~~----~~A~~~~~~Le~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE  280 (422)
T 3tji_A          222 KLHILHDVHERLFP----QQAVQLAKQLEPFQPYFIE--------D--------ILPPQQSAWLEQVRQQS-CVPLALGE  280 (422)
T ss_dssp             SSEEEEECTTCSCH----HHHHHHHHHHGGGCCSEEE--------C--------CSCGGGGGGHHHHHHHC-CCCEEECT
T ss_pred             CCEEEEECCCCCCH----HHHHHHHHHHHhhCCCeEE--------C--------CCChhhHHHHHHHHhhC-CCCEEEeC
Confidence            67899988888864    3578999999999999883        1        11234788889999998 79999999


Q ss_pred             CCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         194 GIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       194 gI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+.+++++.++++.  ||.|++--+-.+...-..++.+
T Consensus       281 ~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit~~~kia~  318 (422)
T 3tji_A          281 LFNNPAEWHDLIVNRRIDFIRCHVSQIGGITPALKLAH  318 (422)
T ss_dssp             TCCSGGGTHHHHHTTCCSEECCCGGGGTSHHHHHHHHH
T ss_pred             CcCCHHHHHHHHhcCCCCEEecCccccCCHHHHHHHHH
Confidence            99999999999975  9999998777777665555544

>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}

Probab=98.47  E-value=2.8e-06  Score=80.31  Aligned_cols=147  Identities=9%  Similarity=0.128  Sum_probs=114.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      ..|+-..+...+++.+.+.++...+.||..+-+..|+.               +++.-.+.++++|+++  ++++.|...
T Consensus       135 ~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDan  199 (377)
T 3my9_A          135 RIPLSFSIADPDFDADLERMRAMVPAGHTVFKMKTGVK---------------PHAEELRILETMRGEFGERIDLRLDFN  199 (377)
T ss_dssp             EEEBCEEECCSSHHHHHHHHHHHTTTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred             eEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEccCCC---------------cHHHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            34566677777899988877777777999999998752               3455567788888876  578999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+..+    ..++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+.+.+.+++++.
T Consensus       200 ~~~~~~~----A~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~  258 (377)
T 3my9_A          200 QALTPFG----AMKILRDVDAFRPTFIE--------Q--------PVPRRHLDAMAGFAAAL-DTPILADESCFDAVDLM  258 (377)
T ss_dssp             TCCCTTT----HHHHHHHHHTTCCSCEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHH
T ss_pred             CCcCHHH----HHHHHHHHhhcCCCEEE--------C--------CCCccCHHHHHHHHHhC-CCCEEECCccCCHHHHH
Confidence            8998653    57899999999999883        1        12335899999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++.  +|.|++--+-.+...=..++
T Consensus       259 ~~i~~~~~d~v~~k~~~~GGit~~~~i  285 (377)
T 3my9_A          259 EVVRRQAADAISVKIMKCGGLMKAQSL  285 (377)
T ss_dssp             HHHHHTCCSEEECCHHHHTSHHHHHHH
T ss_pred             HHHHcCCCCEEEecccccCCHHHHHHH
Confidence            99975  99999876665554433333

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=98.47  E-value=2e-06  Score=81.76  Aligned_cols=147  Identities=9%  Similarity=0.066  Sum_probs=118.1

Q ss_pred             CCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeE
Q psy2386          45 EHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDIT  118 (311)
Q Consensus        45 ~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvs  118 (311)
                      ..|+-..++    ..+|+.+++.|+.+.+.||+.|.+++||                +++.-.+.++++|+++  ++++.
T Consensus       127 ~v~~y~t~~~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avR~a~g~~~~l~  190 (391)
T 3gd6_A          127 KIKVCYPIFRHRFSEEVESNLDVVRQKLEQGFDVFRLYVGK----------------NLDADEEFLSRVKEEFGSRVRIK  190 (391)
T ss_dssp             EEEBCEEECCCSSTTHHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHGGGCEEE
T ss_pred             eEEeeEEecccccCCCHHHHHHHHHHHHHcCCCEEEEeeCC----------------CHHHHHHHHHHHHHHcCCCCcEE
Confidence            456667777    7889999999998888899999999886                2455677888888886  57888


Q ss_pred             -EEEeccCCCCCcHHHHHHHHHHHHHcCC--CEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         119 -VKHRIGIDDINSYDFVRDFVGTVSSAGC--RTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       119 -vKiR~g~~~~~~~~~~~e~~~~l~~~G~--~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                       |...-+|+.    ++..++++.+++.|+  .+|.        +        ..++.|++..+++++.+ ++||  .+.+
T Consensus       191 ~vDan~~~~~----~~A~~~~~~l~~~~i~~~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPI--dE~~  247 (391)
T 3gd6_A          191 SYDFSHLLNW----KDAHRAIKRLTKYDLGLEMIE--------S--------PAPRNDFDGLYQLRLKT-DYPI--SEHV  247 (391)
T ss_dssp             EEECTTCSCH----HHHHHHHHHHTTCCSSCCEEE--------C--------CSCTTCHHHHHHHHHHC-SSCE--EEEC
T ss_pred             EecCCCCcCH----HHHHHHHHHHHhcCCCcceec--------C--------CCChhhHHHHHHHHHHc-CCCc--CCCC
Confidence             888777864    357889999999999  7773        1        11235899999999998 7999  8899


Q ss_pred             CCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         196 KTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       196 ~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+++++.++++.  ||.|++--+-.+...-..++.+.
T Consensus       248 ~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia~~  284 (391)
T 3gd6_A          248 WSFKQQQEMIKKDAIDIFNISPVFIGGLTSAKKAAYA  284 (391)
T ss_dssp             CCHHHHHHHHHHTCCSEEEECHHHHTSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCEEEECchhcCCHHHHHHHHHH
Confidence            999999999975  99999998888887766665543

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=98.46  E-value=1.8e-06  Score=77.09  Aligned_cols=139  Identities=19%  Similarity=0.121  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .++.-+.-++.+.+.|+|.||+-+          ..|+.+-.+.+.+.+=+.++++.++ .|+-|=+-.+.-.   .++.
T Consensus       109 ~~~~Kv~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt---~eei  175 (260)
T 3r12_A          109 ETRTKAHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLD---TEEK  175 (260)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC---HHHH
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEEe----------ehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCC---HHHH
Confidence            445444455667778999999741          1455455688888888889988874 4543333444222   2356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC--E
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID--G  210 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad--g  210 (311)
                      ...++...++|+|+|--.      .||++      +.+..+.++-+++.+ ++++|-++|||+|.+|+.++++. |+  |
T Consensus       176 ~~A~~ia~eaGADfVKTS------TGf~~------~GAT~edV~lm~~~vg~~v~VKaAGGIrt~~~al~mi~aGA~RiG  243 (260)
T 3r12_A          176 IAACVISKLAGAHFVKTS------TGFGT------GGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIG  243 (260)
T ss_dssp             HHHHHHHHHTTCSEEECC------CSSSS------CCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHhCcCEEEcC------CCCCC------CCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCceee
Confidence            777888899999999544      23321      124555555555543 36999999999999999999987 99  6


Q ss_pred             EEEehhhhh
Q psy2386         211 VMLGREAYK  219 (311)
Q Consensus       211 VmigRa~l~  219 (311)
                      +..|+.++.
T Consensus       244 tS~g~~I~~  252 (260)
T 3r12_A          244 TSSGVKIVQ  252 (260)
T ss_dssp             ESCHHHHHH
T ss_pred             cchHHHHHH
Confidence            666665543

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=98.46  E-value=3e-06  Score=74.38  Aligned_cols=159  Identities=16%  Similarity=0.192  Sum_probs=102.3

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ++..|.+.|+..+.+.++.+.+.|+|.|++.+  |.=.++.             ....++++++++.++.|+.+-+-+  
T Consensus        13 i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~-------------~~~~~~i~~l~~~~~~~~~v~l~v--   77 (230)
T 1rpx_A           13 VSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-------------TIGPLVVDSLRPITDLPLDVHLMI--   77 (230)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-------------CCCHHHHHHHGGGCCSCEEEEEES--
T ss_pred             EEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCccccc-------------ccCHHHHHHHHhccCCcEEEEEEe--
Confidence            67788899999999999999999999888863  2111111             111356677777766676665433  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecC--cc--------cc--cc------C---CCCc------------------C
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NA--------FL--KK------L---NPKQ------------------N  166 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~--------~~--~G------~---~g~~------------------~  166 (311)
                      .+      ..++++.+.++|+|.|++|+-  ..        ..  .|      .   ++.+                  .
T Consensus        78 nd------~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~p  151 (230)
T 1rpx_A           78 VE------PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNP  151 (230)
T ss_dssp             SS------HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCT
T ss_pred             cC------HHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcC
Confidence            22      135677778899999998876  20        00  00      0   0000                  0


Q ss_pred             CC-CCcCcH---HHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         167 RK-IPILKY---NFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       167 ~~-~~~~~~---~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      .. ....+|   +.++++++..+    ++|+++.|||+ ++.+.++++. +|+|.+||+++..+.....++
T Consensus       152 g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~  221 (230)
T 1rpx_A          152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDYAEAIK  221 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHH
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHH
Confidence            00 011233   45566666542    68999999999 7888888875 999999999998776544433

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=98.45  E-value=5.5e-06  Score=72.97  Aligned_cols=151  Identities=14%  Similarity=0.226  Sum_probs=105.7

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCC--EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc--ccceeEEEEe
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYD--EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS--VEIDITVKHR  122 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d--~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~--~~~pvsvKiR  122 (311)
                      .+..+|...|...+.++.+.+++.|+|  .+|+=-|.=+||.+   +|      |    ++++++|+.  .++|+.|++-
T Consensus         6 ~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~---~G------~----~~v~~ir~~~~~~~~~dvhLm   72 (228)
T 3ovp_A            6 KIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNIT---FG------H----PVVESLRKQLGQDPFFDMHMM   72 (228)
T ss_dssp             EEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBC---BC------H----HHHHHHHHHHCSSSCEEEEEE
T ss_pred             EeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccc---cC------H----HHHHHHHHhhCCCCcEEEEEE
Confidence            367889999999999999999999998  55655443233322   22      2    456777776  4788888877


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------c------------c
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------F------------L  158 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------~------------~  158 (311)
                      +.  +.      ..+++.+.++|+|.||+|.-..                                .            .
T Consensus        73 v~--~p------~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~  144 (228)
T 3ovp_A           73 VS--KP------EQWVKPMAVAGANQYTFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVE  144 (228)
T ss_dssp             CS--CG------GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSC
T ss_pred             eC--CH------HHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeec
Confidence            52  21      2456777889999999984210                                0            0


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .|+.|.  .. .+..++.++++++..+++++..-|||+ ++.+.++.+. ||.+.+||++++.+.
T Consensus       145 pGf~Gq--~f-~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a~d  205 (228)
T 3ovp_A          145 PGFGGQ--KF-MEDMMPKVHWLRTQFPSLDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRSED  205 (228)
T ss_dssp             TTTCSC--CC-CGGGHHHHHHHHHHCTTCEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTCSC
T ss_pred             CCCCCc--cc-CHHHHHHHHHHHHhcCCCCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCCCC
Confidence            122221  11 123467788998887679999999995 8999999876 999999999876554

>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}

Probab=98.45  E-value=7.2e-07  Score=84.88  Aligned_cols=125  Identities=10%  Similarity=0.032  Sum_probs=103.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      |.+|+++++.|+.+.+.||+.|.|+.|+                +++.-.+.++++|+++  ++++.|...-+|+..   
T Consensus       153 g~~~e~~~~~a~~~~~~G~~~iKlK~g~----------------~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~---  213 (392)
T 3ddm_A          153 GINPENPEDVVARKAAEGYRAFKLKVGF----------------DDARDVRNALHVRELLGAATPLMADANQGWDLP---  213 (392)
T ss_dssp             EECSSSHHHHHHHHHHHTCCCEEEECSS----------------CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHH---
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecCC----------------CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHH---
Confidence            5558999999998888999999999774                4566778899999987  678999988888743   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I  208 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a  208 (311)
                       +..++++.+++.|+++|-        +        ..++.| ++..+++++.. ++||.+.+.+.+++++.++++.  +
T Consensus       214 -~A~~~~~~L~~~~i~~iE--------e--------P~~~~d~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~  275 (392)
T 3ddm_A          214 -RARQMAQRLGPAQLDWLE--------E--------PLRADRPAAEWAELAQAA-PMPLAGGENIAGVAAFETALAARSL  275 (392)
T ss_dssp             -HHHHHHHHHGGGCCSEEE--------C--------CSCTTSCHHHHHHHHHHC-SSCEEECTTCCSHHHHHHHHHHTCE
T ss_pred             -HHHHHHHHHHHhCCCEEE--------C--------CCCccchHHHHHHHHHhc-CCCEEeCCCCCCHHHHHHHHHcCCC
Confidence             568899999999999883        1        122357 89999999998 7999999999999999999975  9


Q ss_pred             CEEEEeh
Q psy2386         209 DGVMLGR  215 (311)
Q Consensus       209 dgVmigR  215 (311)
                      |.|++--
T Consensus       276 d~v~~k~  282 (392)
T 3ddm_A          276 RVMQPDL  282 (392)
T ss_dssp             EEECCCT
T ss_pred             CEEEeCc
Confidence            9999853

>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A

Probab=98.43  E-value=2.9e-06  Score=79.96  Aligned_cols=145  Identities=14%  Similarity=0.187  Sum_probs=114.5

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g  124 (311)
                      |.-..+...+|+.+++.++...+.||..|-+..|+.                ++.-.++++++|+++  ++++.|...-+
T Consensus       131 ~~~~~~~~~~~e~~~~~a~~~~~~G~~~~K~KvG~~----------------~~~d~~~v~avR~~~g~~~~l~vDaN~~  194 (368)
T 3q45_A          131 QTDYTVSIDEPHKMAADAVQIKKNGFEIIKVKVGGS----------------KELDVERIRMIREAAGDSITLRIDANQG  194 (368)
T ss_dssp             EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCSSSEEEEECTTC
T ss_pred             eeEEEecCCCHHHHHHHHHHHHHcCCCeEEEEecCC----------------HHHHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            555678888999999999888888999999997752                455567888898887  57888888777


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      |+.    ++..++++.+++.|+++|-        +        ..++.|++..+++++.. ++||.+.+.+.+++++.++
T Consensus       195 ~~~----~~A~~~~~~l~~~~i~~iE--------q--------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~  253 (368)
T 3q45_A          195 WSV----ETAIETLTLLEPYNIQHCE--------E--------PVSRNLYTALPKIRQAC-RIPIMADESCCNSFDAERL  253 (368)
T ss_dssp             BCH----HHHHHHHHHHGGGCCSCEE--------C--------CBCGGGGGGHHHHHHTC-SSCEEESTTCCSHHHHHHH
T ss_pred             CCh----HHHHHHHHHHhhcCCCEEE--------C--------CCChhHHHHHHHHHhhC-CCCEEEcCCcCCHHHHHHH
Confidence            764    3567899999999999883        1        11234788889999988 7999999999999999999


Q ss_pred             Hhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         205 LNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       205 l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++.  +|.|++--+-.+...=..++.
T Consensus       254 ~~~~~~d~v~~k~~~~GGit~~~~i~  279 (368)
T 3q45_A          254 IQIQACDSFNLKLSKSAGITNALNII  279 (368)
T ss_dssp             HHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred             HHcCCCCeEEechhhcCCHHHHHHHH
Confidence            975  999999766666554444443

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=98.43  E-value=5.5e-06  Score=72.79  Aligned_cols=144  Identities=15%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.+-|+.+||+.+.+   .+.++|+|+|-++.+.+                ++.+.+.++.+++. ++.+.+-+...
T Consensus        64 ~~~~~v~lmv~d~~~~i~---~~~~agad~v~vH~~~~----------------~~~~~~~~~~i~~~-g~~igv~~~p~  123 (228)
T 1h1y_A           64 KAYLDCHLMVTNPSDYVE---PLAKAGASGFTFHIEVS----------------RDNWQELIQSIKAK-GMRPGVSLRPG  123 (228)
T ss_dssp             CSEEEEEEESSCGGGGHH---HHHHHTCSEEEEEGGGC----------------TTTHHHHHHHHHHT-TCEEEEEECTT
T ss_pred             CCcEEEEEEecCHHHHHH---HHHHcCCCEEEECCCCc----------------ccHHHHHHHHHHHc-CCCEEEEEeCC
Confidence            468999999999987744   34457999999994321                12224566666654 66666544332


Q ss_pred             CCCCCcHHHHHHHHHHHHHc--CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSA--GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~--G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      .+        .+.++.+.+.  ++|+|.+.+...   |++|.   .-.+..++.++++++..+++||++-|||+. +.+.
T Consensus       124 t~--------~e~~~~~~~~~~~~d~vl~~sv~p---g~~g~---~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~ni~  188 (228)
T 1h1y_A          124 TP--------VEEVFPLVEAENPVELVLVMTVEP---GFGGQ---KFMPEMMEKVRALRKKYPSLDIEVDGGLGP-STID  188 (228)
T ss_dssp             SC--------GGGGHHHHHSSSCCSEEEEESSCT---TCSSC---CCCGGGHHHHHHHHHHCTTSEEEEESSCST-TTHH
T ss_pred             CC--------HHHHHHHHhcCCCCCEEEEEeecC---CCCcc---cCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HHHH
Confidence            11        2334555665  899998865532   33321   112234577888888765799999999997 8888


Q ss_pred             HHHhh-cCEEEEehhhhhCCcc
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i  223 (311)
                      ++++. +|+|.+|++++..|..
T Consensus       189 ~~~~aGaD~vvvGsai~~~~d~  210 (228)
T 1h1y_A          189 VAASAGANCIVAGSSIFGAAEP  210 (228)
T ss_dssp             HHHHHTCCEEEESHHHHTSSCH
T ss_pred             HHHHcCCCEEEECHHHHCCCCH
Confidence            88875 9999999999876653

>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*

Probab=98.42  E-value=2.3e-06  Score=80.71  Aligned_cols=134  Identities=11%  Similarity=0.067  Sum_probs=105.8

Q ss_pred             CCeEEEecC---CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEE
Q psy2386          46 HPIAFQVGD---NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITV  119 (311)
Q Consensus        46 ~p~~~Ql~g---~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsv  119 (311)
                      .|+-..+.|   .+|+++.+.|+...+. ||..|-+..|+|               +++.-.++++++|+++  ++++.|
T Consensus       138 v~~y~s~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~~~g~~~~l~v  202 (372)
T 3tj4_A          138 VEAYNTDIGWLSFTLEDLLAGSARAVEEDGFTRLKIKVGHD---------------DPNIDIARLTAVRERVDSAVRIAI  202 (372)
T ss_dssp             EEEEECTTCCTTSCHHHHHHHHHHHHHTTCCCEEEEECCCS---------------SHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             eEEEEecCCccCCCHHHHHHHHHHHHHccCCCEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCcEEe
Confidence            455444333   3899999888877777 999999998876               2455577889999987  578999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      ...-+|+.    ++..++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+.+.+.|++
T Consensus       203 Dan~~~~~----~~a~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~  261 (372)
T 3tj4_A          203 DGNGKWDL----PTCQRFCAAAKDLDIYWFE--------E--------PLWYDDVTSHARLARNT-SIPIALGEQLYTVD  261 (372)
T ss_dssp             ECTTCCCH----HHHHHHHHHTTTSCEEEEE--------S--------CSCTTCHHHHHHHHHHC-SSCEEECTTCCSHH
T ss_pred             eCCCCCCH----HHHHHHHHHHhhcCCCEEE--------C--------CCCchhHHHHHHHHhhc-CCCEEeCCCccCHH
Confidence            88888874    3567899999999888772        1        11235899999999998 79999999999999


Q ss_pred             HHHHHHhh--cCEEEEeh
Q psy2386         200 EIDLHLNY--IDGVMLGR  215 (311)
Q Consensus       200 da~~~l~~--adgVmigR  215 (311)
                      ++.++++.  +|.|++--
T Consensus       262 ~~~~~i~~~~~d~v~~k~  279 (372)
T 3tj4_A          262 AFRSFIDAGAVAYVQPDV  279 (372)
T ss_dssp             HHHHHHHTTCCSEECCCT
T ss_pred             HHHHHHHcCCCCEEEeCc
Confidence            99999975  99999843

>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A

Probab=98.42  E-value=3.8e-06  Score=79.18  Aligned_cols=142  Identities=12%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             CCCeEEEecCCCH-HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGDNEP-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      ..|+-..+...++ +.+.++++.+.+.||..+-+..|+.               +++.-.+.++++|+++  ++++.|+.
T Consensus       131 ~v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~~~g~~~~l~vDa  195 (370)
T 1chr_A          131 AIPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDV  195 (370)
T ss_dssp             EEEBEEEECSSSHHHHHHHHHHHHHTTCCCEEEEECSSS---------------CSHHHHHHHHHHHHHSSTTCCEEEEC
T ss_pred             ceeEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEecCCC---------------CHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            3455455554454 5566777777768999999988763               3555677888999987  47999999


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..    +..++++.+++.|+++|.        +        ..++.|++..+++++.. ++||.+.+.+.+++|+
T Consensus       196 n~~~~~~----~a~~~~~~l~~~~i~~iE--------q--------P~~~~~~~~~~~l~~~~-~iPia~dE~~~~~~~~  254 (370)
T 1chr_A          196 NQAWDEQ----VASVYIPELEALGVELIE--------Q--------PVGRENTQALRRLSDNN-RVAIMADESLSTLASA  254 (370)
T ss_dssp             TTCCCTT----HHHHHTHHHHTTTEEEEE--------C--------CSCTTCHHHHHHHHHHS-CSEEEESSSCCSHHHH
T ss_pred             CCCCCHH----HHHHHHHHHHhcCCCEEE--------C--------CCCcccHHHHHHHHhhC-CCCEEeCCCcCCHHHH
Confidence            9999864    467899999999988873        1        12335889999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCc
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~  222 (311)
                      .++++.  +|.|++--+-.+...
T Consensus       255 ~~~~~~~~~d~v~~k~~~~GGit  277 (370)
T 1chr_A          255 FDLARDRSVDVFSLKLCNMGGVS  277 (370)
T ss_dssp             HHHHTTTSCSEEEECTTTSCSHH
T ss_pred             HHHHHcCCCCEEEECccccCCHH
Confidence            999975  999999755554443

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=98.40  E-value=1.8e-06  Score=75.95  Aligned_cols=142  Identities=20%  Similarity=0.198  Sum_probs=93.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCC-CCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGID-DINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~-~~~~~~~  133 (311)
                      ..+.-+.-++.+.+.|+|.||+.+          .+|+.+-.+.+.+.+-+.++++.++ .|+-|=+-.+.- +..+.++
T Consensus        78 ~~~~K~~E~~~Ai~~GAdEIDmVi----------nig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~ee  147 (231)
T 3ndo_A           78 VPGIKATEAELAVAAGATEIDMVI----------DVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEPL  147 (231)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEEe----------ehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHHH
Confidence            445445455667788999999752          1455555788888988899988874 444332333322 0012235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC--
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID--  209 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad--  209 (311)
                      ....++...++|+|+|.-.      .||++     .+.+..+.++-+++.+ ++++|-+.|||+|.+|+.++++. |+  
T Consensus       148 i~~a~~ia~~aGADfVKTS------TGf~~-----~~gAt~edv~lm~~~v~~~v~VKaaGGIrt~~~a~~~i~aGa~Ri  216 (231)
T 3ndo_A          148 LADVCRVARDAGADFVKTS------TGFHP-----SGGASVQAVEIMARTVGERLGVKASGGIRTAEQAAAMLDAGATRL  216 (231)
T ss_dssp             HHHHHHHHHHTTCSEEECC------CSCCT-----TCSCCHHHHHHHHHHHTTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHCcCEEEcC------CCCCC-----CCCCCHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence            6777888889999999543      33320     0124555565555543 36999999999999999999987 99  


Q ss_pred             EEEEehhhh
Q psy2386         210 GVMLGREAY  218 (311)
Q Consensus       210 gVmigRa~l  218 (311)
                      |+..|+.++
T Consensus       217 GtS~g~~I~  225 (231)
T 3ndo_A          217 GLSGSRAVL  225 (231)
T ss_dssp             EESSHHHHH
T ss_pred             ccchHHHHH
Confidence            666666554

>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A

Probab=98.40  E-value=4.6e-06  Score=79.08  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=119.2

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVK  120 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvK  120 (311)
                      .+..|+-..++..+|+++++.++.+.+.||..|-+..|||..           ..+++.-.+.++++|+++  ++++.|.
T Consensus       132 ~~~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~~~~-----------~~~~~~d~~~v~avR~a~G~~~~L~vD  200 (386)
T 3fv9_G          132 AGPVPVISSIGGDTPEAMRAKVARHRAQGFKGHSIKIGASEA-----------EGGPALDAERITACLADRQPGEWYLAD  200 (386)
T ss_dssp             SSCBCEEEEECSCCHHHHHHHHHHHHHTTCCEEEEECCCCTT-----------TTHHHHHHHHHHHHTTTCCTTCEEEEE
T ss_pred             CCceeeeEecCCCCHHHHHHHHHHHHHCCCCEEEEeccCCCC-----------CCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            345678888989999999999998888999999999999732           134677778899999987  5788898


Q ss_pred             EeccCCCCCcHHHHHHHHHHH-HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTV-SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l-~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      ..-+|+..    +..++++.+ ++.++ +|-               +   |..+++..+++++.. ++||.+...+.+.+
T Consensus       201 aN~~~~~~----~A~~~~~~l~~~~~i-~iE---------------e---P~~~~~~~~~l~~~~-~iPIa~dE~~~~~~  256 (386)
T 3fv9_G          201 ANNGLTVE----HALRMLSLLPPGLDI-VLE---------------A---PCASWAETKSLRARC-ALPLLLDELIQTET  256 (386)
T ss_dssp             CTTCCCHH----HHHHHHHHSCSSCCC-EEE---------------C---CCSSHHHHHHHHTTC-CSCEEESTTCCSHH
T ss_pred             CCCCCCHH----HHHHHHHHhhccCCc-EEe---------------c---CCCCHHHHHHHHhhC-CCCEEeCCCcCCHH
Confidence            88888742    467888888 66666 551               1   113889999999988 79999999999999


Q ss_pred             HHHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         200 EIDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       200 da~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++.++++.  +|.|++--+-.+...=..++.
T Consensus       257 ~~~~~~~~~a~d~v~~k~~~~GGit~~~~i~  287 (386)
T 3fv9_G          257 DLIAAIRDDLCDGVGLKVSKQGGITPMLRQR  287 (386)
T ss_dssp             HHHHHHHTTCCSEEEEEHHHHTSHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEECccccCCHHHHHHHH
Confidence            99999975  999999876666655444443

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=98.40  E-value=7.1e-07  Score=79.67  Aligned_cols=165  Identities=14%  Similarity=0.089  Sum_probs=97.3

Q ss_pred             CCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcccc
Q psy2386          45 EHPIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        45 ~~p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~~~  114 (311)
                      ..-++.=|...  +++...+.++.+.+.|+|.|||.+  |...-.-+|-      --+|-  -+.+.+.++++++|+.  
T Consensus        13 ~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGi--PfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--   88 (252)
T 3tha_A           13 ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGV--AYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--   88 (252)
T ss_dssp             SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEEC--CCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECC--CCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--
Confidence            34466666443  568899999999999999999964  3332222210      00111  2457788888888865  


Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--------------------------ecCcc---------cc-
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--------------------------HARNA---------FL-  158 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--------------------------h~Rt~---------~~-  158 (311)
                      +|+.+=.  .|+.-..+ -...|++.+.++|+|.+.+                          .+.+.         .. 
T Consensus        89 ~Pivlm~--Y~N~i~~~-G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~  165 (252)
T 3tha_A           89 KALVFMV--YYNLIFSY-GLEKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAK  165 (252)
T ss_dssp             SEEEEEC--CHHHHHHH-CHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCC
T ss_pred             CCEEEEe--ccCHHHHh-hHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCC
Confidence            6765421  11100000 0123455555555555442                          12210         01 


Q ss_pred             --------ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         159 --------KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       159 --------~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                              .|.+|.... ....-.++++++++.. ++||+..+||++++++.++.+.||||.||++++
T Consensus       166 gFiY~Vs~~GvTG~~~~-~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~a~~~~~~ADGVIVGSAiV  231 (252)
T 3tha_A          166 GFIYLLASIGITGTKSV-EEAILQDKVKEIRSFT-NLPIFVGFGIQNNQDVKRMRKVADGVIVGTSIV  231 (252)
T ss_dssp             SCEEEECCSCSSSCSHH-HHHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHTTTSSEEEECHHHH
T ss_pred             CeEEEEecCCCCCcccC-CCHHHHHHHHHHHHhc-CCcEEEEcCcCCHHHHHHHHhcCCEEEECHHHH
Confidence                    123332110 0001145788898886 899999999999999999887799999999986

>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A

Probab=98.39  E-value=7.6e-06  Score=77.57  Aligned_cols=148  Identities=9%  Similarity=0.058  Sum_probs=114.2

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|+-..+...+++.+.+.++...+.||..|-+..|+.               +++.-.+.++++|+++ ++++.|...-
T Consensus       137 ~v~~~~t~~~~~~~~~~~~a~~~~~~G~~~~K~Kvg~~---------------~~~~d~~~v~avR~a~~~~~l~vDan~  201 (385)
T 3i6e_A          137 TIPLSCSIANPDFDADIALMERLRADGVGLIKLKTGFR---------------DHAFDIMRLELIARDFPEFRVRVDYNQ  201 (385)
T ss_dssp             EEEBEEEECCSSHHHHHHHHHHHHHHTCCEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTT
T ss_pred             ceEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            45666777777899888877776677999999998752               3445566777888776 6789999888


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..    +..++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+...+.+++|+.+
T Consensus       202 ~~~~~----~A~~~~~~L~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~  260 (385)
T 3i6e_A          202 GLEID----EAVPRVLDVAQFQPDFIE--------Q--------PVRAHHFELMARLRGLT-DVPLLADESVYGPEDMVR  260 (385)
T ss_dssp             CCCGG----GHHHHHHHHHTTCCSCEE--------C--------CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHHHH
T ss_pred             CCCHH----HHHHHHHHHHhcCCCEEE--------C--------CCCcccHHHHHHHHHhC-CCCEEEeCCcCCHHHHHH
Confidence            89854    367899999999999883        1        12345899999999987 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      +++.  +|.|++--+-.+...=..++.
T Consensus       261 ~~~~~~~d~v~~k~~~~GGit~~~~i~  287 (385)
T 3i6e_A          261 AAHEGICDGVSIKIMKSGGLTRAQTVA  287 (385)
T ss_dssp             HHHHTCCSEEEECHHHHTSHHHHHHHH
T ss_pred             HHHcCCCCEEEecccccCCHHHHHHHH
Confidence            9975  999999766665554343443

>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*

Probab=98.39  E-value=4.8e-06  Score=78.89  Aligned_cols=139  Identities=11%  Similarity=0.060  Sum_probs=110.5

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvK  120 (311)
                      +..|+-..++..+|+.+++.++...+. ||..+-+..|++               +++.-.+.++++|+++  ++++.|.
T Consensus       155 ~~v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~---------------~~~~d~~~v~avR~a~G~~~~l~vD  219 (383)
T 3toy_A          155 RPIPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHG---------------DLATDEAMIKGLRALLGPDIALMLD  219 (383)
T ss_dssp             CCEEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSS---------------CHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CceEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCCeEEEe
Confidence            345666666667999999999888777 999999998764               3555667888898886  5788898


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      ..-+|+.    ++..++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+.+.+.+++|
T Consensus       220 aN~~~~~----~~A~~~~~~l~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~  278 (383)
T 3toy_A          220 FNQSLDP----AEATRRIARLADYDLTWIE--------E--------PVPQENLSGHAAVRERS-EIPIQAGENWWFPRG  278 (383)
T ss_dssp             CTTCSCH----HHHHHHHHHHGGGCCSEEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEECTTCCHHHH
T ss_pred             CCCCCCH----HHHHHHHHHHHhhCCCEEE--------C--------CCCcchHHHHHHHHhhc-CCCEEeCCCcCCHHH
Confidence            8888874    3567899999999998883        1        12335899999999998 799999999999999


Q ss_pred             HHHHHhh--cCEEEEehhhh
Q psy2386         201 IDLHLNY--IDGVMLGREAY  218 (311)
Q Consensus       201 a~~~l~~--adgVmigRa~l  218 (311)
                      +.++++.  +|.|++--+-.
T Consensus       279 ~~~~i~~~a~d~v~ik~~~~  298 (383)
T 3toy_A          279 FAEAIAAGASDFIMPDLMKV  298 (383)
T ss_dssp             HHHHHHHTCCSEECCCTTTT
T ss_pred             HHHHHHcCCCCEEEeCcccc
Confidence            9999975  99998754333

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=98.39  E-value=7.8e-07  Score=79.20  Aligned_cols=88  Identities=17%  Similarity=0.297  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-.-++...|         .+.+++.++++.+.+ .+|+...|||+|.++++++++. ||-|.
T Consensus        33 P~~~a~~~~~~gad~lhvvDld~a~~~---------~~~~~~~i~~i~~~~-~~pl~vGGGIrs~e~~~~~l~~GadkVi  102 (243)
T 4gj1_A           33 PLKKFKEYEKAGAKELHLVDLTGAKDP---------SKRQFALIEKLAKEV-SVNLQVGGGIRSKEEVKALLDCGVKRVV  102 (243)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEHHHHHCG---------GGCCHHHHHHHHHHC-CSEEEEESSCCCHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEecCccccc---------chhHHHHHHHHHHhc-CCCeEeccccccHHHHHHHHHcCCCEEE
Confidence            578999999999999998644332222         135889999999998 7999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|+.++.||.++.++.+.+
T Consensus       103 i~t~a~~~p~li~e~~~~~  121 (243)
T 4gj1_A          103 IGSMAIKDATLCLEILKEF  121 (243)
T ss_dssp             ECTTTTTCHHHHHHHHHHH
T ss_pred             EccccccCCchHHHHHhcc
Confidence            9999999999998887654

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=98.39  E-value=1.2e-06  Score=78.69  Aligned_cols=168  Identities=12%  Similarity=0.172  Sum_probs=101.2

Q ss_pred             hccccCCCCCCeEEEecCCCHH-HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--
Q psy2386          37 HCLDFNAEEHPIAFQVGDNEPK-KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        37 ~~l~~~~~~~p~~~Ql~g~~~~-~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--  113 (311)
                      ++|..-. +.|+..|+.+.||- .+....+.++++||.+| +|.  |..-...+.+-..|.+++--..++++.++.+-  
T Consensus        87 evlp~v~-~iPV~Agv~~~DP~~~~g~~Le~lk~~Gf~Gv-~N~--ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~  162 (286)
T 2p10_A           87 EVLPVVR-HTPVLAGVNGTDPFMVMSTFLRELKEIGFAGV-QNF--PTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKL  162 (286)
T ss_dssp             HHGGGCS-SSCEEEEECTTCTTCCHHHHHHHHHHHTCCEE-EEC--SCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred             hhhccCC-CCCEEEEECCcCCCcCHHHHHHHHHHhCCceE-EEC--CCcccccchhhhhHhhcCCCHHHHHHHHHHHHHC
Confidence            3444433 78999999999985 35555577889999999 996  43323334444455555444444444444332  


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHH----HHhCCCCe
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNL----KKDFPELE  188 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i----~~~~~~ip  188 (311)
                      ++- |+=+-    +      ..+-++.+.++|+|.|.+|.... ..|.-|.... ....+ -+.+.++    ++..|++.
T Consensus       163 gL~-Ti~~v----~------~~eeA~amA~agpDiI~~h~glT-~gglIG~~~a-vs~~~~~e~i~~i~~a~~~vnpdvi  229 (286)
T 2p10_A          163 DLL-TTPYV----F------SPEDAVAMAKAGADILVCHMGLT-TGGAIGARSG-KSMDDCVSLINECIEAARTIRDDII  229 (286)
T ss_dssp             TCE-ECCEE----C------SHHHHHHHHHHTCSEEEEECSCC----------C-CCHHHHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCe-EEEec----C------CHHHHHHHHHcCCCEEEECCCCC-CCCcccCCCc-ccHHHhHHHHHHHHHHHHHhCCCcE
Confidence            332 22111    1      13557788899999999996521 2333332111 11122 2333333    33346777


Q ss_pred             EEEec-CCCCHHHHHHHHhh---cCEEEEehhhhhCC
Q psy2386         189 IIING-GIKTKKEIDLHLNY---IDGVMLGREAYKNP  221 (311)
Q Consensus       189 vi~nG-gI~s~~da~~~l~~---adgVmigRa~l~~P  221 (311)
                      |+.-| +|.+++|++.+++.   +||+..++++.+=|
T Consensus       230 vLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~p  266 (286)
T 2p10_A          230 ILSHGGPIANPEDARFILDSCQGCHGFYGASSMERLP  266 (286)
T ss_dssp             EEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcCC
Confidence            76555 99999999999985   99999999997766

>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}

Probab=98.38  E-value=3.1e-06  Score=80.40  Aligned_cols=143  Identities=15%  Similarity=0.153  Sum_probs=112.8

Q ss_pred             CCCCeEEEecC---CCHHHHHHHHHHHHHc---CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cc
Q psy2386          44 EEHPIAFQVGD---NEPKKLAKSAKIIQKW---GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EI  115 (311)
Q Consensus        44 ~~~p~~~Ql~g---~~~~~~~~aa~~~~~~---g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~  115 (311)
                      +..|+-..+++   .+|+.+++.++...+.   ||..|-+..|.+               +++.-.+.++++|+++  ++
T Consensus       156 ~~v~~y~s~g~~~~~~~e~~~~~a~~~~~~~~~G~~~iKlKvG~~---------------~~~~d~~~v~avR~a~G~~~  220 (390)
T 3ugv_A          156 GSVKAYNSNGLWLKSPAEVAAEAVELKAEGQGTGFKGLKLRMGRD---------------DPAVDIETAEAVWDAVGRDT  220 (390)
T ss_dssp             CEEEEEECSCCCSSCHHHHHHHHHHHHHTTCTTCCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTS
T ss_pred             CceEEEEecccccCCCHHHHHHHHHHHHHhhhCCCcEEEEecCCC---------------CHHHHHHHHHHHHHHhCCCC
Confidence            34455566666   7899999999888877   999999998764               3555667888898887  57


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ++.|...-+|+.    ++..++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+...+
T Consensus       221 ~l~vDaN~~~~~----~~A~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~  279 (390)
T 3ugv_A          221 ALMVDFNQGLDM----AEAMHRTRQIDDLGLEWIE--------E--------PVVYDNFDGYAQLRHDL-KTPLMIGENF  279 (390)
T ss_dssp             EEEEECTTCCCH----HHHHHHHHHHTTSCCSEEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEECTTC
T ss_pred             EEEEECCCCCCH----HHHHHHHHHHHhhCCCEEE--------C--------CCCcccHHHHHHHHHhc-CCCEEeCCCc
Confidence            899988888874    3567899999999998883        1        12235899999999998 7999999999


Q ss_pred             CCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         196 KTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       196 ~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      .+++|+.++++.  +|.|++--+-.+...
T Consensus       280 ~~~~~~~~~i~~~a~d~v~ik~~~~GGit  308 (390)
T 3ugv_A          280 YGPREMHQALQAGACDLVMPDFMRIGGVS  308 (390)
T ss_dssp             CSHHHHHHHHHTTCCSEECCBHHHHTHHH
T ss_pred             CCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence            999999999975  999998755554433

>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*

Probab=98.36  E-value=5e-06  Score=78.26  Aligned_cols=136  Identities=13%  Similarity=0.201  Sum_probs=106.8

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChH-HHHHHHHHHhccc--cceeEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPL-LVSDCIKAMRDSV--EIDITV  119 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~-~~~~iv~~v~~~~--~~pvsv  119 (311)
                      +..|+...++..+|+.+++.++...+. ||..+-+..|+.                +. .-.++++++|+++  ++++.|
T Consensus       127 ~~v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~----------------~~~~d~~~v~avR~a~g~~~~l~v  190 (367)
T 3dg3_A          127 DRMRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRR----------------PVQLDTAVVRALRERFGDAIELYV  190 (367)
T ss_dssp             SEEEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCS----------------STHHHHHHHHHHHHHHGGGSEEEE
T ss_pred             CeEEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCC----------------hhhhHHHHHHHHHHHhCCCCEEEE
Confidence            344566777788999999888877776 999999987752                12 3456788888876  578888


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      ...-+|+.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.. ++||.+.+.+.+++
T Consensus       191 Dan~~~~~----~~a~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~  249 (367)
T 3dg3_A          191 DGNRGWSA----AESLRAMREMADLDLLFAE--------E--------LCPADDVLSRRRLVGQL-DMPFIADESVPTPA  249 (367)
T ss_dssp             ECTTCSCH----HHHHHHHHHTTTSCCSCEE--------S--------CSCTTSHHHHHHHHHHC-SSCEEECTTCSSHH
T ss_pred             ECCCCCCH----HHHHHHHHHHHHhCCCEEE--------C--------CCCcccHHHHHHHHHhC-CCCEEecCCcCCHH
Confidence            88878874    3567899999999998883        1        11235889999999998 79999999999999


Q ss_pred             HHHHHHhh--cCEEEEehh
Q psy2386         200 EIDLHLNY--IDGVMLGRE  216 (311)
Q Consensus       200 da~~~l~~--adgVmigRa  216 (311)
                      ++.++++.  +|.|++==.
T Consensus       250 ~~~~~i~~~~~d~v~~k~~  268 (367)
T 3dg3_A          250 DVTREVLGGSATAISIKTA  268 (367)
T ss_dssp             HHHHHHHHTSCSEEEECHH
T ss_pred             HHHHHHHcCCCCEEEeehh
Confidence            99999975  999999433

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=98.36  E-value=3.9e-06  Score=73.99  Aligned_cols=156  Identities=16%  Similarity=0.212  Sum_probs=106.3

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ++.+|...|...+.+..+.+.+.|+|.|.+-.  |.=.+             +...-.++++++++.++.|+.|-+-+ .
T Consensus         7 i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp-------------~~~~g~~~v~~lr~~~~~~~~vhlmv-~   72 (230)
T 1tqj_A            7 VAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVP-------------NITIGPLIVDAIRPLTKKTLDVHLMI-V   72 (230)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSS-------------CBCBCHHHHHHHGGGCCSEEEEEEES-S
T ss_pred             EEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCc-------------chhhhHHHHHHHHhhcCCcEEEEEEc-c
Confidence            67899999999999999999999999866653  22111             12222377888888877788766554 2


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecC--cc--------c-----------c-------------------------c
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHAR--NA--------F-----------L-------------------------K  159 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~R--t~--------~-----------~-------------------------~  159 (311)
                      +.       .++++.+.++|+|.+++|.-  ..        .           .                         .
T Consensus        73 dp-------~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~p  145 (230)
T 1tqj_A           73 EP-------EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNP  145 (230)
T ss_dssp             SG-------GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC
T ss_pred             CH-------HHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEecc
Confidence            21       13456677888888888865  10        0           0                         0


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      |+.|  + ...+..++.++++++..+    ++||.+-|||+. +.+.++.+. ||++.+|++++..+..-..++
T Consensus       146 g~gg--q-~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~a~d~~~~~~  215 (230)
T 1tqj_A          146 GFGG--Q-SFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPNYAEAIA  215 (230)
T ss_dssp             ------C-CCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSCHHHHHH
T ss_pred             ccCC--c-cCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHCCCCHHHHHH
Confidence            1111  1 112345677888877642    699999999997 899998875 999999999998777544443

>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A

Probab=98.35  E-value=2.5e-06  Score=80.48  Aligned_cols=129  Identities=11%  Similarity=0.092  Sum_probs=99.7

Q ss_pred             CCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .|+...++. .+++++.+.|+.+.+.||+.|.++.|                  |+...++++++|+++ ++++.+...-
T Consensus       137 ~~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~  198 (375)
T 1r0m_A          137 VEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK------------------PGWDVQPVRATREAFPDIRLTVDANS  198 (375)
T ss_dssp             EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTT
T ss_pred             eeeeEEecCCCCHHHHHHHHHHHHHhcccEEEEecC------------------hHHHHHHHHHHHHHcCCCeEEEeCCC
Confidence            344445543 48999999999888899999999853                  122335566776665 6788888877


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..    + .++++.+++.|+.+|-        +-        .++.||+..+++++.. ++||.+.+.+.+++++.+
T Consensus       199 ~~~~~----~-~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~  256 (375)
T 1r0m_A          199 AYTLA----D-AGRLRQLDEYDLTYIE--------QP--------LAWDDLVDHAELARRI-RTPLCLDESVASASDARK  256 (375)
T ss_dssp             CCCGG----G-HHHHHTTGGGCCSCEE--------CC--------SCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred             CCCHH----H-HHHHHHHHhCCCcEEE--------CC--------CCcccHHHHHHHHHhC-CCCEEecCccCCHHHHHH
Confidence            78643    5 7889999999999883        11        1245889999999998 799999999999999999


Q ss_pred             HHhh--cCEEEEe
Q psy2386         204 HLNY--IDGVMLG  214 (311)
Q Consensus       204 ~l~~--adgVmig  214 (311)
                      +++.  ||.|++=
T Consensus       257 ~i~~~~~d~v~ik  269 (375)
T 1r0m_A          257 ALALGAGGVINLK  269 (375)
T ss_dssp             HHHHTSCSEEEEC
T ss_pred             HHHhCCCCEEEEC
Confidence            9975  9999994

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=98.35  E-value=4.8e-06  Score=73.58  Aligned_cols=139  Identities=15%  Similarity=0.177  Sum_probs=93.4

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCCC-------C
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGIDD-------I  128 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~~-------~  128 (311)
                      ++++.+.+.|+|.|+|..+              .--+.+.+.++++++|+ .++|+.+=.-      .|.|.       .
T Consensus        24 ~~~~~l~~~GaD~IelG~S--------------~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i~~gvDg~iipdLp~   88 (234)
T 2f6u_A           24 EIIKAVADSGTDAVMISGT--------------QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNVVYDVDYLFVPTVLN   88 (234)
T ss_dssp             HHHHHHHTTTCSEEEECCC--------------TTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCCCCCSSEEEEEEETT
T ss_pred             HHHHHHHHcCCCEEEECCC--------------CCCCHHHHHHHHHHhcC-CCCCEEEecCCcchhhcCCCEEEEcccCC
Confidence            3456778899999999862              11347889999999998 7888755211      11110       0


Q ss_pred             CcHHHHH-----HHHHHH----HHcC-----CCEEE-----EecCcc-------------------------c-------
Q psy2386         129 NSYDFVR-----DFVGTV----SSAG-----CRTFI-----VHARNA-------------------------F-------  157 (311)
Q Consensus       129 ~~~~~~~-----e~~~~l----~~~G-----~~~it-----vh~Rt~-------------------------~-------  157 (311)
                      ++.+++.     +.++.+    ++.|     .+.|-     +++.+.                         +       
T Consensus        89 ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vy  168 (234)
T 2f6u_A           89 SADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLPIIY  168 (234)
T ss_dssp             BSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEE
Confidence            1111222     344222    6677     77665     222210                         0       


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCc
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF  222 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~  222 (311)
                      +.+ +|.      +.+.++++++++.++++||+..|||+|+++++++++.||+|.+|+++..+|.
T Consensus       169 l~~-~G~------~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~gAd~VIVGSa~v~~~~  226 (234)
T 2f6u_A          169 IEY-SGT------YGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIYEKGI  226 (234)
T ss_dssp             EEC-TTS------CCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHHHSSEEEECHHHHHHCH
T ss_pred             EeC-CCC------cchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHhCCCEEEEChHHHhCHH
Confidence            011 221      3578999999998646999999999999999999888999999999999875

>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A

Probab=98.35  E-value=3.3e-06  Score=81.14  Aligned_cols=162  Identities=10%  Similarity=0.068  Sum_probs=120.6

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc------------cc--------CChHHHH
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI------------LM--------TKPLLVS  103 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~------------Ll--------~~~~~~~  103 (311)
                      +..|+-..+.+.+|+++++.|+...+.||..|-+..|-|....   .+|..            .-        ++.+...
T Consensus       137 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvG~~~~~~---~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~  213 (424)
T 3v3w_A          137 ERILSYTHANGKDLDSTLEAVRKAKDKGYKAIRVQCGIPGIAK---TYGVSTNTKSYEPADADLPSVEVWSTEKYLNYIP  213 (424)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSC---CTTCC-----CCSCCBSSCCEEEECHHHHHHHHH
T ss_pred             CceeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCccccc---cccccccccccccccccccccccccchhHHHHHH
Confidence            3455555677889999999999888899999999988753110   01110            00        1246677


Q ss_pred             HHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         104 DCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       104 ~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      +++++||+++  ++++.|...-+|+.    ++..++++.|++.|+++|--                ..++.|++..++++
T Consensus       214 e~v~avR~avG~d~~l~vDaN~~~~~----~~A~~~~~~L~~~~i~~iEq----------------P~~~~d~~~~~~l~  273 (424)
T 3v3w_A          214 DVFAAVRKEFGPDIHLLHDVHHRLTP----IEAARLGKALEPYHLFWMED----------------AVPAENQESFKLIR  273 (424)
T ss_dssp             HHHHHHHHHHCSSSEEEEECTTCCCH----HHHHHHHHHHGGGCCSEEEC----------------CSCCSSTTHHHHHH
T ss_pred             HHHHHHHHHcCCCCcEEEeCCCCCCH----HHHHHHHHHHHhcCCCEEEC----------------CCChHhHHHHHHHH
Confidence            8899999987  67899988877864    35789999999999998831                11234788899999


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.+ ++||++.+.+.+++++.++++.  ||.|++--+-.+...=..++.+
T Consensus       274 ~~~-~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~  322 (424)
T 3v3w_A          274 QHT-TTPLAVGEVFNSIHDCRELIQNQWIDYIRTTIVHAGGISQMRRIAD  322 (424)
T ss_dssp             HHC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHH
T ss_pred             hhC-CCCEEEccCcCCHHHHHHHHHcCCCCeEeecchhcCCHHHHHHHHH
Confidence            998 7999999999999999999975  9999997666655554444443

>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A

Probab=98.35  E-value=2.6e-06  Score=81.80  Aligned_cols=162  Identities=8%  Similarity=0.008  Sum_probs=118.9

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc---cc-----------------CChHHHH
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI---LM-----------------TKPLLVS  103 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~---Ll-----------------~~~~~~~  103 (311)
                      +..|+-..+.+.+|+++++.|+...+.||..|-+..|.|....   .+|..   .-                 ++.+...
T Consensus       138 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~---~~g~~~~~~~~~~~~~~~p~~~~~d~~~~~~~d~  214 (425)
T 3vcn_A          138 TGVTVYGHANGETIEDTIAEAVKYKAMGYKAIRLQTGVPGLAS---TYGVSKDKMFYEPADNDLPTENIWSTAKYLNSVP  214 (425)
T ss_dssp             SSEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEECCTTCSC---CTTCSSCSSCCCCCCBSSCCEEEECHHHHHTTTH
T ss_pred             CeeeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeecCccccc---cccccccccccCcccccccccccccchhHHHHHH
Confidence            3455555677889999999999888899999999988753110   01100   00                 0023456


Q ss_pred             HHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         104 DCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       104 ~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      +++++||+++  ++++.|...-+|+.    ++..++++.|++.|+++|--                ..++.|++..++++
T Consensus       215 e~v~avR~a~G~d~~l~vDaN~~~~~----~~A~~~~~~L~~~~i~~iEq----------------P~~~~d~~~~~~l~  274 (425)
T 3vcn_A          215 KLFERAREVLGWDVHLLHDVHHRLTP----IEAARLGKDLEPYRLFWLED----------------SVPAENQAGFRLIR  274 (425)
T ss_dssp             HHHHHHHHHHCSSSEEEEECTTCCCH----HHHHHHHHHHGGGCCSEEEC----------------CSCCSSTTHHHHHH
T ss_pred             HHHHHHHHHcCCCCEEEEECCCCCCH----HHHHHHHHHHHhcCCCEEEC----------------CCChhhHHHHHHHH
Confidence            7888898887  67888888777764    35789999999999998831                11234788899999


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +.+ ++||++.+.+.+++++.++++.  ||.|++--+-.+...=..++.+
T Consensus       275 ~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~  323 (425)
T 3vcn_A          275 QHT-TTPLAVGEIFAHVWDAKQLIEEQLIDYLRATVLHAGGITNLKKIAA  323 (425)
T ss_dssp             HHC-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHH
T ss_pred             hcC-CCCEEeCCCcCCHHHHHHHHHcCCCCeEecChhhcCCHHHHHHHHH
Confidence            998 7999999999999999999975  9999997666655554444443

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=98.34  E-value=9.5e-06  Score=70.41  Aligned_cols=150  Identities=16%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CC-CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +...|...|+..+.++++.+.+.|+|.+.+-.  |. |.          .+-..+    ++++++++.++.|+.+-+-+ 
T Consensus         6 ~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~----------~~~~g~----~~i~~i~~~~~~~~~v~l~v-   70 (220)
T 2fli_A            6 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVP----------NISFGA----DVVASMRKHSKLVFDCHLMV-   70 (220)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS----------CBCBCH----HHHHHHHTTCCSEEEEEEES-
T ss_pred             EEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCC----------ccccCH----HHHHHHHHhCCCCEEEEEee-
Confidence            66778889999999999999999999866653  33 11          011113    44556666666666554332 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------ccc------------------------------------c
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------FLK------------------------------------K  160 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~~~------------------------------------G  160 (311)
                       .+.      .++++.+.++|+|.+++|+-..        ...                                    |
T Consensus        71 -~d~------~~~i~~~~~~gad~v~vh~~~~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g  143 (220)
T 2fli_A           71 -VDP------ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPG  143 (220)
T ss_dssp             -SSG------GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTT
T ss_pred             -cCH------HHHHHHHHHcCCCEEEEccCccccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCC
Confidence             221      1234677888999998874210        000                                    1


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      +.|.   ...+..++.++++++..+    ++|+++.|||+ ++++.++++. +|+|.+||+++..+..
T Consensus       144 ~~g~---~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~  207 (220)
T 2fli_A          144 FGGQ---AFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDL  207 (220)
T ss_dssp             CSSC---CCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCH
T ss_pred             Cccc---ccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCH
Confidence            1110   011112244566655431    58999999999 7999888875 9999999999876654

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=98.34  E-value=5.8e-06  Score=72.88  Aligned_cols=143  Identities=13%  Similarity=0.139  Sum_probs=97.0

Q ss_pred             HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe------ccCC--------CCCcH
Q psy2386          66 IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------IGID--------DINSY  131 (311)
Q Consensus        66 ~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------~g~~--------~~~~~  131 (311)
                      .+.+.|.|.|+|..              ..--..+.+.++++++|+ .++|+.+=..      .|.|        +.+..
T Consensus        31 ~~~~~GtDaI~vGg--------------s~gvt~~~~~~~v~~ik~-~~~Piil~p~~~~~~~~gaD~il~pslln~~~~   95 (235)
T 3w01_A           31 AICMSQTDAIMIGG--------------TDDVTEDNVIHLMSKIRR-YPLPLVLEISNIESVMPGFDFYFVPTVLNSTDV   95 (235)
T ss_dssp             HHHTSSCSEEEECC--------------SSCCCHHHHHHHHHHHTT-SCSCEEEECCCSTTCCTTCSEEEEEEETTBSSG
T ss_pred             HHHHcCCCEEEECC--------------cCCcCHHHHHHHHHHhcC-cCCCEEEecCCHHHhhcCCCEEEEccccCCCCc
Confidence            35688999999962              222367889999999999 8999866322      1111        00111


Q ss_pred             HHH-HHHHHHHHHcCC-----CEEE-----EecCcc-------------------------------ccccCCCCcCCCC
Q psy2386         132 DFV-RDFVGTVSSAGC-----RTFI-----VHARNA-------------------------------FLKKLNPKQNRKI  169 (311)
Q Consensus       132 ~~~-~e~~~~l~~~G~-----~~it-----vh~Rt~-------------------------------~~~G~~g~~~~~~  169 (311)
                      +.+ -.-.+.+.+.|.     +.|.     +.+.+.                               .|--++|.     
T Consensus        96 ~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~vY~e~sG~-----  170 (235)
T 3w01_A           96 AFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMYIEYSGI-----  170 (235)
T ss_dssp             GGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEEECTTS-----
T ss_pred             chhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEEEEecCCC-----
Confidence            010 112345777887     5554     332211                               00011332     


Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                       +.+.++++++++.++++||+..|||+|+++++++.+.||+|.+|+++..||..+.++.+
T Consensus       171 -~g~~~~v~~ir~~~~~~pv~vGfGI~~~e~a~~~~~gAD~VVVGSai~~~~~~~~e~v~  229 (235)
T 3w01_A          171 -YGDVSKVQAVSEHLTETQLFYGGGISSEQQATEMAAIADTIIVGDIIYKDIKKALKTVK  229 (235)
T ss_dssp             -CCCHHHHHHHHTTCSSSEEEEESCCCSHHHHHHHHTTSSEEEECTHHHHCHHHHHHTTC
T ss_pred             -cCCHHHHHHHHHhcCCCCEEEECCcCCHHHHHHHHcCCCEEEECCceecCHHHHHHHHH
Confidence             23789999999976579999999999999999988789999999999999998887654

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=98.34  E-value=4.7e-06  Score=72.64  Aligned_cols=77  Identities=9%  Similarity=0.088  Sum_probs=58.7

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +..+.+.|+|+|.+.+-... +...|     .++.+|+.++++++.. ++||++.||| |++++.++++. +|+|++|++
T Consensus       123 ~~~a~~~gaD~i~~~~~f~~-~~~~g-----~~~~~~~~l~~~~~~~-~~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~  194 (221)
T 1yad_A          123 AVQAEKEDADYVLFGHVFET-DCKKG-----LEGRGVSLLSDIKQRI-SIPVIAIGGM-TPDRLRDVKQAGADGIAVMSG  194 (221)
T ss_dssp             HHHHHHTTCSEEEEECCC----------------CHHHHHHHHHHHC-CSCEEEESSC-CGGGHHHHHHTTCSEEEESHH
T ss_pred             HHHHHhCCCCEEEECCcccc-CCCCC-----CCCCCHHHHHHHHHhC-CCCEEEECCC-CHHHHHHHHHcCCCEEEEhHH
Confidence            56677899999998654210 00000     0246899999999887 8999999999 99999999987 999999999


Q ss_pred             hhhCCc
Q psy2386         217 AYKNPF  222 (311)
Q Consensus       217 ~l~~P~  222 (311)
                      ++..+.
T Consensus       195 i~~~~d  200 (221)
T 1yad_A          195 IFSSAE  200 (221)
T ss_dssp             HHTSSS
T ss_pred             hhCCCC
Confidence            987655

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=98.31  E-value=4.8e-06  Score=73.60  Aligned_cols=138  Identities=16%  Similarity=0.085  Sum_probs=90.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE--eccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH--RIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi--R~g~~~~~~~~~  133 (311)
                      ..+.-+.-++.+.+.|+|.||+.+          ..|...-.+.+.+.+=+.++++.++- ..+|+  -.+.-.   .++
T Consensus        93 ~~~~Kv~Ea~~Ai~~GAdEIDmVi----------Nig~lk~g~~~~v~~eI~~v~~a~~~-~~lKVIlEt~~Lt---~ee  158 (239)
T 3ngj_A           93 PSEVKAYETKVAVEQGAEEVDMVI----------NIGMVKAKKYDDVEKDVKAVVDASGK-ALTKVIIECCYLT---NEE  158 (239)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHHTT-SEEEEECCGGGSC---HHH
T ss_pred             chHHHHHHHHHHHHcCCCEEEEEe----------ehHHhccccHHHHHHHHHHHHHHhcC-CceEEEEecCCCC---HHH
Confidence            445445555667778999999852          14444446778888888888887742 23454  333321   235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC--
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID--  209 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad--  209 (311)
                      ....++...++|+|+|-..      .||++      +.+..+.++-+++.+ ++++|.++|||+|.+|+.++++. |+  
T Consensus       159 i~~a~~ia~~aGADfVKTS------TGf~~------ggAt~~dv~lmr~~vg~~v~VKasGGIrt~~da~~~i~aGA~ri  226 (239)
T 3ngj_A          159 KVEVCKRCVAAGAEYVKTS------TGFGT------HGATPEDVKLMKDTVGDKALVKAAGGIRTFDDAMKMINNGASRI  226 (239)
T ss_dssp             HHHHHHHHHHHTCSEEECC------CSSSS------CCCCHHHHHHHHHHHGGGSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHCcCEEECC------CCCCC------CCCCHHHHHHHHHhhCCCceEEEeCCCCCHHHHHHHHHhcccce
Confidence            6777888899999999654      23321      124555555555543 25999999999999999999986 88  


Q ss_pred             EEEEehhhhh
Q psy2386         210 GVMLGREAYK  219 (311)
Q Consensus       210 gVmigRa~l~  219 (311)
                      |+..|+.++.
T Consensus       227 GtS~~~~I~~  236 (239)
T 3ngj_A          227 GASAGIAILN  236 (239)
T ss_dssp             EESCHHHHHH
T ss_pred             ecccHHHHHh
Confidence            5555555443

>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}

Probab=98.30  E-value=4.1e-06  Score=78.78  Aligned_cols=136  Identities=10%  Similarity=0.063  Sum_probs=102.4

Q ss_pred             CCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .|+...++. .+++++.+.|+.+.+.||+.|.++.|                  |+...+.++++|+++ ++++.+...-
T Consensus       130 ~~~~~~~g~~~~~~~~~~~a~~~~~~G~~~iKik~~------------------~~~d~~~v~avr~a~~~~~l~vDan~  191 (369)
T 2zc8_A          130 VEVGVSLGIQPSVEDTLRVVERHLEEGYRRIKLKIK------------------PGWDYEVLKAVREAFPEATLTADANS  191 (369)
T ss_dssp             EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB------------------TTBSHHHHHHHHHHCTTSCEEEECTT
T ss_pred             eeceEEecCCCCHHHHHHHHHHHHHhhhheeeeecC------------------hhHHHHHHHHHHHHcCCCeEEEecCC
Confidence            344445543 48999999999888899999999853                  122335566676665 6778888877


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..    + .++++.+++.|+.+|.        +-        .++.||+..+++++.. ++||.+.+.+.+++++.+
T Consensus       192 ~~~~~----~-~~~~~~l~~~~i~~iE--------qP--------~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~  249 (369)
T 2zc8_A          192 AYSLA----N-LAQLKRLDELRLDYIE--------QP--------LAYDDLLDHAKLQREL-STPICLDESLTGAEKARK  249 (369)
T ss_dssp             CCCGG----G-HHHHHGGGGGCCSCEE--------CC--------SCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred             CCCHH----H-HHHHHHHHhCCCcEEE--------CC--------CCcccHHHHHHHHhhC-CCCEEEcCccCCHHHHHH
Confidence            78643    5 6889999999999884        11        1235889999999988 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCC
Q psy2386         204 HLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P  221 (311)
                      +++.  +|.|++==.-.+..
T Consensus       250 ~i~~~~~d~v~ik~~~~GGi  269 (369)
T 2zc8_A          250 AIELGAGRVFNVKPARLGGH  269 (369)
T ss_dssp             HHHHTCCSEEEECHHHHTSH
T ss_pred             HHHhCCCCEEEEchhhhCCH
Confidence            9975  99999954444443

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=98.29  E-value=4.2e-05  Score=68.73  Aligned_cols=132  Identities=11%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             HHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEec-cCCCC--CcHHHH
Q psy2386          63 SAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRI-GIDDI--NSYDFV  134 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~-g~~~~--~~~~~~  134 (311)
                      .++.+.+.|+|.|++..  |.               .+.+.+.+-++++++.+   ++||.+=..+ |.+..  .+.+..
T Consensus        97 ~ve~Ai~~Ga~~v~~~~nig~---------------~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i  161 (263)
T 1w8s_A           97 SVEEAVSLGASAVGYTIYPGS---------------GFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIV  161 (263)
T ss_dssp             CHHHHHHTTCSEEEEEECTTS---------------TTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHH
T ss_pred             HHHHHHHCCCCEEEEEEecCC---------------cCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHH
Confidence            34556678999999853  51               12233344444444332   7888765433 11110  022345


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC--CHHHHHHHHh----h-
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK--TKKEIDLHLN----Y-  207 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~--s~~da~~~l~----~-  207 (311)
                      ...++...+.|+|+|.+.  +.               .+.+.++++++.++.+||++.|||+  |.+++.+++.    . 
T Consensus       162 ~~a~~~a~~~GAD~vkt~--~~---------------~~~e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aG  224 (263)
T 1w8s_A          162 AYAARIALELGADAMKIK--YT---------------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAG  224 (263)
T ss_dssp             HHHHHHHHHHTCSEEEEE--CC---------------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEEc--CC---------------CCHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence            555788899999999765  21               2567788888887434999999999  9999998883    3 


Q ss_pred             cCEEEEehhhhhCCcchHH
Q psy2386         208 IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       208 adgVmigRa~l~~P~i~~~  226 (311)
                      |+|+.+||+++..|.....
T Consensus       225 A~GvsvgraI~~~~dp~~~  243 (263)
T 1w8s_A          225 ALGIAVGRNVWQRRDALKF  243 (263)
T ss_dssp             CCEEEESHHHHTSTTHHHH
T ss_pred             CeEEEEehhhcCCcCHHHH
Confidence            9999999999988875443

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=98.28  E-value=3.2e-05  Score=74.52  Aligned_cols=147  Identities=13%  Similarity=0.156  Sum_probs=115.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.-+=|.-++-+..+    +..+|+|.|=|++.+               .+.+.+.++++..++ .+..+.|-+.. 
T Consensus       108 ~lPvLrKDFI~d~~Qi~e----a~~~GAD~ILLi~a~---------------l~~~~l~~l~~~a~~-lgm~~LvEvh~-  166 (452)
T 1pii_A          108 PQPILCKDFIIDPYQIYL----ARYYQADACLLMLSV---------------LDDDQYRQLAAVAHS-LEMGVLTEVSN-  166 (452)
T ss_dssp             CSCEEEESCCCSHHHHHH----HHHTTCSEEEEETTT---------------CCHHHHHHHHHHHHH-TTCEEEEEECS-
T ss_pred             CCCeEEEeccCCHHHHHH----HHHcCCCEEEEEccc---------------CCHHHHHHHHHHHHH-cCCeEEEEeCC-
Confidence            578888888888876554    447899999999654               124677888888777 58888886653 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~  203 (311)
                                .+=+.++.+.|++.|-+..|.  +..+         ..|++...++.+.+| ++++|+-|||.|++|+.+
T Consensus       167 ----------~eE~~~A~~lga~iIGinnr~--L~t~---------~~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~  225 (452)
T 1pii_A          167 ----------EEEQERAIALGAKVVGINNRD--LRDL---------SIDLNRTRELAPKLGHNVTVISESGINTYAQVRE  225 (452)
T ss_dssp             ----------HHHHHHHHHTTCSEEEEESEE--TTTT---------EECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHH
T ss_pred             ----------HHHHHHHHHCCCCEEEEeCCC--CCCC---------CCCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHH
Confidence                      233566788999999999886  3332         258888888888765 589999999999999999


Q ss_pred             HHhhcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         204 HLNYIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       204 ~l~~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      +.+.+|+|.||.+++..+.+-..+.+.+.+
T Consensus       226 ~~~~a~avLVGealmr~~d~~~~~~~l~~~  255 (452)
T 1pii_A          226 LSHFANGFLIGSALMAHDDLHAAVRRVLLG  255 (452)
T ss_dssp             HTTTCSEEEECHHHHTCSCHHHHHHHHHHC
T ss_pred             HHHhCCEEEEcHHHcCCcCHHHHHHHHHHH
Confidence            986699999999999999988877765543

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.28  E-value=4.3e-06  Score=79.42  Aligned_cols=102  Identities=18%  Similarity=0.204  Sum_probs=78.7

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++.+.++++.+++. +.|+.++++..    .    ..++++.+.++|++.+.+|++.. .+++.+      +..+|+.+
T Consensus       140 d~~~~~~~i~~~~~~-g~~v~~~v~~~----~----~~e~a~~~~~agad~i~i~~~~~-~~~~~~------~~~~~~~i  203 (393)
T 2qr6_A          140 DTELLSERIAQVRDS-GEIVAVRVSPQ----N----VREIAPIVIKAGADLLVIQGTLI-SAEHVN------TGGEALNL  203 (393)
T ss_dssp             CHHHHHHHHHHHHHT-TSCCEEEECTT----T----HHHHHHHHHHTTCSEEEEECSSC-CSSCCC------C-----CH
T ss_pred             CHHHHHHHHHHHhhc-CCeEEEEeCCc----c----HHHHHHHHHHCCCCEEEEeCCcc-ccccCC------CcccHHHH
Confidence            889999999999886 89999988741    1    35778888899999999997652 222221      11378788


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      .++++.. ++||++ |||.|+++++.+++. ||+|++|+|.
T Consensus       204 ~~l~~~~-~~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~Gg  242 (393)
T 2qr6_A          204 KEFIGSL-DVPVIA-GGVNDYTTALHMMRTGAVGIIVGGGE  242 (393)
T ss_dssp             HHHHHHC-SSCEEE-ECCCSHHHHHHHHTTTCSEEEESCCS
T ss_pred             HHHHHhc-CCCEEE-CCcCCHHHHHHHHHcCCCEEEECCCc
Confidence            9999988 899999 999999999999987 9999998854

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=98.27  E-value=3.9e-05  Score=65.88  Aligned_cols=141  Identities=16%  Similarity=0.143  Sum_probs=90.9

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.|+++-+.-.| |+.++   +.+.++|+|+|-+|.+..                .+.+.++++.+++. +.++.+-+- 
T Consensus        53 ~~~i~~~l~~~di~~~~~---~~a~~~Gad~v~vh~~~~----------------~~~~~~~~~~~~~~-g~~~gv~~~-  111 (207)
T 3ajx_A           53 DKIVFADMKTMDAGELEA---DIAFKAGADLVTVLGSAD----------------DSTIAGAVKAAQAH-NKGVVVDLI-  111 (207)
T ss_dssp             TSEEEEEEEECSCHHHHH---HHHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEECT-
T ss_pred             CCeEEEEEEecCccHHHH---HHHHhCCCCEEEEeccCC----------------hHHHHHHHHHHHHc-CCceEEEEe-
Confidence            578888777778 88765   456678999999985432                23345556665553 555433221 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      ..+  +    ..+.++.+.+.|+|++.++ +.+....|   .     .+.. +.+++++..  ++|+++.|||+ ++++.
T Consensus       112 s~~--~----p~~~~~~~~~~g~d~v~~~~~~~~~~~g---~-----~~~~-~~i~~~~~~--~~pi~v~GGI~-~~~~~  173 (207)
T 3ajx_A          112 GIE--D----KATRAQEVRALGAKFVEMHAGLDEQAKP---G-----FDLN-GLLAAGEKA--RVPFSVAGGVK-VATIP  173 (207)
T ss_dssp             TCS--S----HHHHHHHHHHTTCSEEEEECCHHHHTST---T-----CCTH-HHHHHHHHH--TSCEEEESSCC-GGGHH
T ss_pred             cCC--C----hHHHHHHHHHhCCCEEEEEecccccccC---C-----CchH-HHHHHhhCC--CCCEEEECCcC-HHHHH
Confidence            111  1    1234566677899999554 44421122   1     1223 556666553  58999999998 78888


Q ss_pred             HHHhh-cCEEEEehhhhhCCcch
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      ++++. ||+|.+||+++..+...
T Consensus       174 ~~~~aGad~vvvGsaI~~~~dp~  196 (207)
T 3ajx_A          174 AVQKAGAEVAVAGGAIYGAADPA  196 (207)
T ss_dssp             HHHHTTCSEEEESHHHHTSSSHH
T ss_pred             HHHHcCCCEEEEeeeccCCCCHH
Confidence            88876 99999999998866543

>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*

Probab=98.27  E-value=1.6e-05  Score=75.11  Aligned_cols=148  Identities=6%  Similarity=0.079  Sum_probs=115.7

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +..|+-..++..+|+.+++.|+...+.||..|-+..|.                +++.-.+.++++|+++  ++++.|..
T Consensus       130 ~~v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~----------------~~~~d~~~v~avR~a~g~~~~L~vDa  193 (379)
T 3r0u_A          130 NSIVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA----------------DFNRDIQLLKALDNEFSKNIKFRFDA  193 (379)
T ss_dssp             CEEEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHCCTTSEEEEEC
T ss_pred             CeEEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC----------------CHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence            34466677888899999999988888899999998763                3566678889999987  47899988


Q ss_pred             eccCCCCCcHHHHHHHHHHHHH--cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSS--AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~--~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      .-+|+.    ++..++++.+++  .|+.+|-        +        ..++.|++..+++++.. .+||.++..+.|+.
T Consensus       194 N~~w~~----~~A~~~~~~l~~~~~~l~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~  252 (379)
T 3r0u_A          194 NQGWNL----AQTKQFIEEINKYSLNVEIIE--------Q--------PVKYYDIKAMAEITKFS-NIPVVADESVFDAK  252 (379)
T ss_dssp             TTCCCH----HHHHHHHHHHHTSCCCEEEEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEESTTCSSHH
T ss_pred             CCCcCH----HHHHHHHHHHhhcCCCcEEEE--------C--------CCCcccHHHHHHHHhcC-CCCEEeCCccCCHH
Confidence            888874    356899999999  6666662        1        12235899999999998 79999999999999


Q ss_pred             HHHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         200 EIDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       200 da~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      |+.++++.  +|.|++--+-.+...=..++.
T Consensus       253 ~~~~~i~~~a~d~v~~k~~~~GGi~~~~~ia  283 (379)
T 3r0u_A          253 DAERVIDEQACNMINIKLAKTGGILEAQKIK  283 (379)
T ss_dssp             HHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred             HHHHHHHcCCCCEEEECccccCCHHHHHHHH
Confidence            99999975  999999766655554344443

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=98.25  E-value=1.4e-05  Score=71.12  Aligned_cols=152  Identities=15%  Similarity=0.229  Sum_probs=106.6

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCC--EEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYD--EINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d--~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .+..+|...|...+.+..+.+++.|+|  .+|+=-|.=+||.+   +|          -.+++++|+.+ ++|+.|.+-+
T Consensus        29 ~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit---~G----------~~~v~~lr~~~p~~~ldvHLmv   95 (246)
T 3inp_A           29 QINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLT---FG----------PMVLKALRDYGITAGMDVHLMV   95 (246)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBC---CC----------HHHHHHHHHHTCCSCEEEEEEC
T ss_pred             eeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchh---cC----------HHHHHHHHHhCCCCeEEEEEee
Confidence            488999999999999999999999998  55554443333321   22          25677888877 8999998875


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------c------------cc
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------F------------LK  159 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------~------------~~  159 (311)
                      .  +      ...+++.+.++|+|.||+|.-..                                .            ..
T Consensus        96 ~--~------p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~P  167 (246)
T 3inp_A           96 K--P------VDALIESFAKAGATSIVFHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNP  167 (246)
T ss_dssp             S--S------CHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCT
T ss_pred             C--C------HHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecC
Confidence            2  1      13567888899999999984210                                0            01


Q ss_pred             cCCCCcCCCCCcCcHHHHHHHHHhC----CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         160 KLNPKQNRKIPILKYNFVYNLKKDF----PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       160 G~~g~~~~~~~~~~~~~i~~i~~~~----~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      |+.|.  ... +..++.|+++++..    .+++|..-|||+ ++.+.++.+. ||.+.+||++++.+..
T Consensus       168 GfgGQ--~fi-~~~l~KI~~lr~~~~~~~~~~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp  232 (246)
T 3inp_A          168 GFGGQ--KFI-PAMLDKAKEISKWISSTDRDILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSY  232 (246)
T ss_dssp             TC--C--CCC-TTHHHHHHHHHHHHHHHTSCCEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCH
T ss_pred             CCCCc--ccc-hHHHHHHHHHHHHHHhcCCCeeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCH
Confidence            22221  111 33467777777642    258999999999 6889888876 9999999998876543

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=98.25  E-value=2e-05  Score=68.95  Aligned_cols=138  Identities=16%  Similarity=0.138  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe--ccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--IGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR--~g~~~~~~~~~  133 (311)
                      +.+.-..-++.+.+.|+|.||+.+          ..|...-.+.+.+.+=+.++++.++-+ .+|+=  .+.-.   .++
T Consensus        69 ~~~~k~~e~~~Ai~~GAdevd~vi----------nig~~~~g~~~~v~~ei~~v~~a~~~~-~lkvIlet~~l~---~e~  134 (220)
T 1ub3_A           69 EKEVKALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQA-VLKVILETGYFS---PEE  134 (220)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTTS-EEEEECCGGGSC---HHH
T ss_pred             chHHHHHHHHHHHHcCCCEEEecc----------cchhhhCCCHHHHHHHHHHHHHHHcCC-CceEEEecCCCC---HHH
Confidence            344455556677788999999853          134444457788888888888877533 45632  23222   235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cC--
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-ID--  209 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-ad--  209 (311)
                      ....++...++|+|+|-..      .||++      +.+..+.++.+++.+ +++||.+.|||+|.+|+.++++. |+  
T Consensus       135 i~~a~~ia~eaGADfVKTs------TGf~~------~gat~~dv~~m~~~vg~~v~VkaaGGirt~~~al~~i~aGa~Ri  202 (220)
T 1ub3_A          135 IARLAEAAIRGGADFLKTS------TGFGP------RGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRL  202 (220)
T ss_dssp             HHHHHHHHHHHTCSEEECC------CSSSS------CCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHhCCCEEEeC------CCCCC------CCCCHHHHHHHHHhhCCCCeEEEECCCCCHHHHHHHHHCCCccc
Confidence            6778888899999999543      23321      124555555555422 26999999999999999999986 99  


Q ss_pred             EEEEehhhhh
Q psy2386         210 GVMLGREAYK  219 (311)
Q Consensus       210 gVmigRa~l~  219 (311)
                      |+..|+.++.
T Consensus       203 G~S~g~~I~~  212 (220)
T 1ub3_A          203 GTSSGVALVA  212 (220)
T ss_dssp             EETTHHHHHC
T ss_pred             chhHHHHHHH
Confidence            7776766543

>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*

Probab=98.24  E-value=9e-06  Score=77.67  Aligned_cols=140  Identities=9%  Similarity=0.032  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCcccc---ccCcccC----cccC---ChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRV---QNGFFGA----ILMT---KPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v---~~~~~G~----~Ll~---~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      .+|+++++.|+.+.+.||..|-+..+.+....   .+.|.|.    ..-.   ..+...+++++||+++  ++++.|...
T Consensus       142 ~~~e~~~~~a~~~~~~Gf~~iKlKv~~~~~~~~~~~~pG~~~~~~~~~~~~~~~~~~~~e~v~avR~avG~d~~l~vDaN  221 (409)
T 3go2_A          142 TDLDGVKRTAEEARERQFRAIKTNIFIHDDGPLHAWRPGFAVPFQPALNVDRKVLRNLRAHLEALRDGAGPDVEILLDLN  221 (409)
T ss_dssp             CSHHHHHHHHHHHHHTTCCEEEECCEECSSSSCEECBGGGTBSCCTTCCCCHHHHHHHHHHHHHHHHHHCTTSEEEEECT
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcccccccccccccccCCCccCCcccccchHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            47999999999888899999999874322110   0001111    1101   1356678899999987  678999888


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+.    ++..++++.|++.|+++|..                  |+.|++..+++++.+ ++||++.+.+.+++++.
T Consensus       222 ~~~~~----~~A~~~~~~L~~~~i~~iE~------------------P~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~  278 (409)
T 3go2_A          222 FNAKP----EGYLKILRELADFDLFWVEI------------------DSYSPQGLAYVRNHS-PHPISSCETLFGIREFK  278 (409)
T ss_dssp             TCSCH----HHHHHHHHHTTTSCCSEEEC------------------CCSCHHHHHHHHHTC-SSCEEECTTCCHHHHHH
T ss_pred             CCCCH----HHHHHHHHHHhhcCCeEEEe------------------CcCCHHHHHHHHhhC-CCCEEeCCCcCCHHHHH
Confidence            78864    35688999999999999852                  124888999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhh
Q psy2386         203 LHLNY--IDGVMLGREA  217 (311)
Q Consensus       203 ~~l~~--adgVmigRa~  217 (311)
                      ++++.  ||.|++=-.-
T Consensus       279 ~~i~~~~~d~v~~k~~~  295 (409)
T 3go2_A          279 PFFDANAVDVAIVDTIW  295 (409)
T ss_dssp             HHHHTTCCSEEEECHHH
T ss_pred             HHHHhCCCCEEEeCCCC
Confidence            99975  9999986444

>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}

Probab=98.24  E-value=1.1e-05  Score=76.59  Aligned_cols=145  Identities=10%  Similarity=0.114  Sum_probs=113.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKi  121 (311)
                      ..|+-..+...+|+.+++.++...+.||..|-+..|++               +++.-.+.++++|+++   ++++.|..
T Consensus       153 ~v~~y~s~~~~~~e~~~~~a~~~~~~G~~~~KlKvg~~---------------~~~~d~~~v~avR~a~gg~~~~L~vDa  217 (391)
T 4e8g_A          153 RVPSYYATGIGQPDEIARIAAEKVAEGFPRLQIKIGGR---------------PVEIDIETVRKVWERIRGTGTRLAVDG  217 (391)
T ss_dssp             EEECCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTTTCEEEEEC
T ss_pred             cEEEeEEcCCCCHHHHHHHHHHHHHcCCcEEEEcCCCC---------------CHHHHHHHHHHHHHHhCCCCCeEEEeC
Confidence            34566778888999999999888888999999998874               3455567778887765   46788888


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..    +..++++.+++.++ +|-               +   |..|++..+++++.. .+||.+...+.+..|+
T Consensus       218 N~~w~~~----~A~~~~~~L~~~~i-~iE---------------e---P~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~  273 (391)
T 4e8g_A          218 NRSLPSR----DALRLSRECPEIPF-VLE---------------Q---PCNTLEEIAAIRGRV-QHGIYLDESGEDLSTV  273 (391)
T ss_dssp             TTCCCHH----HHHHHHHHCTTSCE-EEE---------------S---CSSSHHHHHHHGGGC-CSCEEESTTCCSHHHH
T ss_pred             CCCCCHH----HHHHHHHHHhhcCe-EEe---------------c---CCccHHHHHHHHhhC-CCCEEeCCCCCCHHHH
Confidence            8888742    56788999998887 661               1   124899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      .++++.  +|.|++--+-.+...=..++.
T Consensus       274 ~~~~~~~a~d~v~ik~~~~GGit~~~~ia  302 (391)
T 4e8g_A          274 IRAAGQGLCDGFGMKLTRIGGLQQMAAFR  302 (391)
T ss_dssp             HHHHHTTCCSEEEEEHHHHTSHHHHHHHH
T ss_pred             HHHHHcCCCCEEEeCccccCCHHHHHHHH
Confidence            999975  999999876666554444443

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=98.23  E-value=2.9e-05  Score=66.82  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=59.4

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                      +..+.+.|+|+|.+++......+    ..  ..+.+|+.++++++.. ++||++.|||+ ++++.++++. +|+|++|++
T Consensus       121 ~~~~~~~g~d~i~~~~~~~~~~~----~~--~~~~~~~~l~~l~~~~-~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~  192 (215)
T 1xi3_A          121 ALEAEKKGADYLGAGSVFPTKTK----ED--ARVIGLEGLRKIVESV-KIPVVAIGGIN-KDNAREVLKTGVDGIAVISA  192 (215)
T ss_dssp             HHHHHHHTCSEEEEECSSCC--------C--CCCCHHHHHHHHHHHC-SSCEEEESSCC-TTTHHHHHTTTCSEEEESHH
T ss_pred             HHHHHhcCCCEEEEcCCccCCCC----CC--CCCcCHHHHHHHHHhC-CCCEEEECCcC-HHHHHHHHHcCCCEEEEhHH
Confidence            34567889999998763210000    00  1246899999999887 89999999999 9999998876 999999999


Q ss_pred             hhhCCcc
Q psy2386         217 AYKNPFL  223 (311)
Q Consensus       217 ~l~~P~i  223 (311)
                      ++..|..
T Consensus       193 i~~~~d~  199 (215)
T 1xi3_A          193 VMGAEDV  199 (215)
T ss_dssp             HHTSSSH
T ss_pred             HhCCCCH
Confidence            9877653

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.22  E-value=2.1e-05  Score=77.16  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=85.0

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-c-ceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-E-IDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~-~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      +.++.+.+.|++.+-+....          |     ++..+.+.++.+++.. + +||.++--..          .+-++
T Consensus       245 e~~~~l~e~gv~~l~Vd~~~----------g-----~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t----------~~~a~  299 (503)
T 1me8_A          245 ERVPALVEAGADVLCIDSSD----------G-----FSEWQKITIGWIREKYGDKVKVGAGNIVD----------GEGFR  299 (503)
T ss_dssp             HHHHHHHHHTCSEEEECCSC----------C-----CSHHHHHHHHHHHHHHGGGSCEEEEEECS----------HHHHH
T ss_pred             HHHHHHHhhhccceEEeccc----------C-----cccchhhHHHHHHHhCCCCceEeeccccC----------HHHHH
Confidence            33566666789988775321          1     1233555567777765 5 7888765431          46678


Q ss_pred             HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC--------CCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386         140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP--------ELEIIINGGIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~--------~ipvi~nGgI~s~~da~~~l~~-adg  210 (311)
                      .+.++|++.+.+ |........ .......+......+.++.+.+.        ++|||+.|||+++.|+.++++. ||+
T Consensus       300 ~l~~aGad~I~V-g~~~g~~~~-~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~  377 (503)
T 1me8_A          300 YLADAGADFIKI-GIGGGSICI-TREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADF  377 (503)
T ss_dssp             HHHHHTCSEEEE-CSSCSTTCC-STTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred             HHHHhCCCeEEe-cccCCcCcc-cccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCE
Confidence            899999999988 442100000 00000112235566666654432        4999999999999999999987 999


Q ss_pred             EEEehhhhh
Q psy2386         211 VMLGREAYK  219 (311)
Q Consensus       211 VmigRa~l~  219 (311)
                      ||+||.++.
T Consensus       378 V~iG~~~~~  386 (503)
T 1me8_A          378 IMLGRYFAR  386 (503)
T ss_dssp             EEESHHHHT
T ss_pred             EEECchhhc
Confidence            999999864

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=98.21  E-value=4.5e-06  Score=89.70  Aligned_cols=114  Identities=11%  Similarity=0.128  Sum_probs=79.5

Q ss_pred             ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc-CCCCCcCcHH
Q psy2386          98 KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ-NRKIPILKYN  175 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~~  175 (311)
                      +++.+.++++.+++.. ++||.||+-....       ..+.++.+.++|+|+|+|.|..... +-++.. ....+..-..
T Consensus       976 s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g-------i~~~A~~a~~AGAD~IvVsG~eGGT-gasp~~~~~~~G~Pt~~ 1047 (1479)
T 1ea0_A          976 SIEDLAQLIYDLKQINPDAKVTVKLVSRSG-------IGTIAAGVAKANADIILISGNSGGT-GASPQTSIKFAGLPWEM 1047 (1479)
T ss_dssp             SHHHHHHHHHHHHHHCTTCEEEEEEECCTT-------HHHHHHHHHHTTCSEEEEECTTCCC-SSEETTHHHHSCCCHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCCCC-------hHHHHHHHHHcCCcEEEEcCCCCCC-CCCchhhhcCCchhHHH
Confidence            3567889999999987 8999999876421       2456888999999999997553200 000000 0001111224


Q ss_pred             HHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         176 FVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       176 ~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .+.++.+.+      .++|||+.|||.|..|+.+++.. ||+|++||+++.
T Consensus      1048 aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~ 1098 (1479)
T 1ea0_A         1048 GLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLI 1098 (1479)
T ss_dssp             HHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHH
Confidence            455555532      26999999999999999999987 999999999965

>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*

Probab=98.21  E-value=1.3e-05  Score=77.36  Aligned_cols=165  Identities=9%  Similarity=0.066  Sum_probs=121.2

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----------cccCc------------ccCcc--cCC
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----------VQNGF------------FGAIL--MTK   98 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----------v~~~~------------~G~~L--l~~   98 (311)
                      +..|+-..+.+.+|+++++.++...+.||..+-+..|-....           +..+.            -|..+  .++
T Consensus       143 ~~v~~y~~~~~~~~e~~~~~a~~~~~~Gf~~~K~KvG~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (440)
T 3t6c_A          143 DGIALYVHTDGADEVEVEDSARAKMEEGYQYIRCQMGMYGGAGTDDLRLIANRMVKAKNIQPKRSPRTKAPGIYFDPEAY  222 (440)
T ss_dssp             SSEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECSSSSTTCCBCCHHHHSSCBCCCSSCCCCCCCSSCCSSEECCHHHH
T ss_pred             CeeEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeeccCCccccccccccccccccccccccccccccccccccccchhh
Confidence            345555567889999999999988888999999988743210           00000            00000  011


Q ss_pred             hHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386          99 PLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF  176 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~  176 (311)
                      .+...+++++||+++  ++++.|...-+|+..    +..++++.|++.|+.+|-        +        ..++.|++.
T Consensus       223 ~~~d~~~v~avR~a~G~d~~L~vDaN~~~~~~----~A~~~~~~L~~~~i~~iE--------e--------P~~~~d~~~  282 (440)
T 3t6c_A          223 AKSIPRLFDHLRNKLGFSVELLHDAHERITPI----NAIHMAKALEPYQLFFLE--------D--------PVAPENTEW  282 (440)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEEECTTCSCHH----HHHHHHHHTGGGCCSEEE--------C--------SSCGGGGGG
T ss_pred             HHHHHHHHHHHHHhcCCCCeEEEECCCCCCHH----HHHHHHHHhhhcCCCEEE--------C--------CCChhhHHH
Confidence            456678899999987  678999988888743    568999999999999883        1        112347888


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+++++.. ++||.+.+.+.+++++.++++.  ||.|++--+-.+...=..++.+
T Consensus       283 ~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit~~~~ia~  336 (440)
T 3t6c_A          283 LKMLRQQS-STPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGITPAKKIAI  336 (440)
T ss_dssp             HHHHHHHC-CSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHHHHHHHHH
T ss_pred             HHHHHhhc-CCCEEeCcccCCHHHHHHHHHcCCccceeechhhhCCHHHHHHHHH
Confidence            89999988 7999999999999999999975  9999998777776665555544

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=98.20  E-value=1.6e-05  Score=69.20  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=57.5

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +..+.+.|+|+|.+..-..   ..+  ...+..+.+|+.++++++.+ + +||++.|||. ++++.++++. +|||.+|+
T Consensus       129 ~~~a~~~g~d~v~~~~v~~---t~~--~~~~~~~~~~~~l~~~~~~~-~~~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs  201 (227)
T 2tps_A          129 VKQAEEDGADYVGLGPIYP---TET--KKDTRAVQGVSLIEAVRRQG-ISIPIVGIGGIT-IDNAAPVIQAGADGVSMIS  201 (227)
T ss_dssp             HHHHHHHTCSEEEECCSSC---CCS--SSSCCCCCTTHHHHHHHHTT-CCCCEEEESSCC-TTTSHHHHHTTCSEEEESH
T ss_pred             HHHHHhCCCCEEEECCCcC---CCC--CCCCCCccCHHHHHHHHHhC-CCCCEEEEcCCC-HHHHHHHHHcCCCEEEEhH
Confidence            5567789999998732110   000  00112346899999999887 6 9999999999 9999998876 99999999


Q ss_pred             hhhhCCc
Q psy2386         216 EAYKNPF  222 (311)
Q Consensus       216 a~l~~P~  222 (311)
                      +++..+.
T Consensus       202 ~i~~~~d  208 (227)
T 2tps_A          202 AISQAED  208 (227)
T ss_dssp             HHHTSSC
T ss_pred             HhhcCCC
Confidence            9986543

>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}

Probab=98.20  E-value=1.2e-05  Score=76.54  Aligned_cols=144  Identities=9%  Similarity=0.056  Sum_probs=110.3

Q ss_pred             CCCeEEEec-CCC--HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEE
Q psy2386          45 EHPIAFQVG-DNE--PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITV  119 (311)
Q Consensus        45 ~~p~~~Ql~-g~~--~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsv  119 (311)
                      ..|+-..++ +.+  |+.+++.|+.+.+.||..|.++++ |             -.|    .+.++++|+++  ++++.|
T Consensus       149 ~v~~~~s~g~~~~~~~e~~~~~a~~~~~~G~~~iKlKv~-~-------------~~d----~~~v~avR~a~G~~~~L~v  210 (400)
T 3mwc_A          149 YIESGAALGIPEDGRIETLIHQVEESLQEGYRRIKIKIK-P-------------GWD----VEPLQETRRAVGDHFPLWT  210 (400)
T ss_dssp             EEEBCEEECCCTTCCHHHHHHHHHHHHHHTCSCEEEECB-T-------------TBS----HHHHHHHHHHHCTTSCEEE
T ss_pred             eEEeeEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEEeC-c-------------chH----HHHHHHHHHhcCCCCEEEE
Confidence            345556665 346  999999998888889999999873 1             123    45677777776  578999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      ...-+|+..    + .++++.+++.|+.+|-        +        ..++.|++..+++++.. ++||.+...+.+++
T Consensus       211 DaN~~w~~~----~-~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~  268 (400)
T 3mwc_A          211 DANSSFELD----Q-WETFKAMDAAKCLFHE--------Q--------PLHYEALLDLKELGERI-ETPICLDESLISSR  268 (400)
T ss_dssp             ECTTCCCGG----G-HHHHHHHGGGCCSCEE--------S--------CSCTTCHHHHHHHHHHS-SSCEEESTTCCSHH
T ss_pred             eCCCCCCHH----H-HHHHHHHHhcCCCEEe--------C--------CCChhhHHHHHHHHhhC-CCCEEEeCCcCCHH
Confidence            988888753    4 5889999999999883        1        12335899999999998 79999999999999


Q ss_pred             HHHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         200 EIDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       200 da~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++.++++.  +|.|++--+-.+...=..++.
T Consensus       269 ~~~~~~~~~~~d~v~~k~~~~GGit~~~~ia  299 (400)
T 3mwc_A          269 VAEFVAKLGISNIWNIKIQRVGGLLEAIKIY  299 (400)
T ss_dssp             HHHHHHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred             HHHHHHhcCCCCEEEEcchhhCCHHHHHHHH
Confidence            99999975  999999877766655444443

>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}

Probab=98.18  E-value=1.5e-05  Score=75.75  Aligned_cols=151  Identities=9%  Similarity=-0.043  Sum_probs=112.9

Q ss_pred             CCCCeEEEec---CCC--HH----HHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386          44 EEHPIAFQVG---DNE--PK----KLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV  113 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~--~~----~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~  113 (311)
                      +..|+-..++   +.+  ++    .+++.++...+.||..|-++ .|-+             ..+++.-.+++++||+++
T Consensus       131 ~~v~~y~s~~~~~~~~~~~~~~i~~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~~~v~avR~a~  197 (394)
T 3mqt_A          131 AQLTPYFTLYPSVAADATLSEIVEAYKPLIAKAKERGAKAVKVCIIPND-------------KVSDKEIVAYLRELREVI  197 (394)
T ss_dssp             SSBCCEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCCCT-------------TSCHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEecCCCCCCcchhhhHHHHHHHHHHHHHcCCCEEEecccCCC-------------ccCHHHHHHHHHHHHHHh
Confidence            3455556665   233  44    66667777778899999994 3311             135777888999999987


Q ss_pred             --cceeEEEEeccC-CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         114 --EIDITVKHRIGI-DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       114 --~~pvsvKiR~g~-~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                        ++++.|...-+| +.    ++..++++.+++.|+++|.        +        ..++.|++..+++++.+ ++||+
T Consensus       198 G~d~~l~vDan~~~~~~----~~A~~~~~~L~~~~i~~iE--------e--------P~~~~~~~~~~~l~~~~-~iPIa  256 (394)
T 3mqt_A          198 GWDMDMMVDCLYRWTDW----QKARWTFRQLEDIDLYFIE--------A--------CLQHDDLIGHQKLAAAI-NTRLC  256 (394)
T ss_dssp             CSSSEEEEECTTCCSCH----HHHHHHHHHTGGGCCSEEE--------S--------CSCTTCHHHHHHHHHHS-SSEEE
T ss_pred             CCCCeEEEECCCCCCCH----HHHHHHHHHHhhcCCeEEE--------C--------CCCcccHHHHHHHHhhC-CCCEE
Confidence              678999888888 43    2568999999999999883        1        11235889999999998 79999


Q ss_pred             EecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         191 INGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      +.+.+.|++++.++++.  ||.|++--+-.+...=..++.
T Consensus       257 ~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit~~~~ia  296 (394)
T 3mqt_A          257 GAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIM  296 (394)
T ss_dssp             ECTTCCHHHHHHHHHHHHCCSEECCCTTTSSCHHHHHHHH
T ss_pred             eCCCcCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHH
Confidence            99999999999999975  999999766666655444443

>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A

Probab=98.15  E-value=4.1e-05  Score=72.58  Aligned_cols=145  Identities=10%  Similarity=0.073  Sum_probs=110.9

Q ss_pred             CHHHHHHHH-HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSA-KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa-~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      +|++.++.+ +...+.||..|-+..|++..        ......|+...++++++|+++  ++++.|...-+|+..    
T Consensus       146 ~~~~~~~~~~~~~~~~Gf~~~K~KvG~~~~--------~d~~~~~~~~~~~v~avReavG~d~~l~vDaN~~~~~~----  213 (388)
T 3tcs_A          146 TPRDEAERLKRLRDTQGFTAFKVRAGAEVG--------RNRDEWPGRTEEIIPTMRRELGDDVDLLIDANSCYTPD----  213 (388)
T ss_dssp             CHHHHHHHHHHHHHHHCCCEEEEECSCTTC--------TTCCSSTTHHHHHHHHHHHHHCSSSEEEEECTTCCCHH----
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEccCCCcc--------cccccchhHHHHHHHHHHHHhCCCCeEEEeCCCCcCHH----
Confidence            576655544 44457899999999998642        122234677788999999987  678999988888743    


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +..++++.+++.|+.+|-        +        ..++.|++..+++++.+ .+||.+...+.|..++.++++.  +|.
T Consensus       214 ~A~~~~~~l~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~  276 (388)
T 3tcs_A          214 RAIEVGHMLQDHGFCHFE--------E--------PCPYWELAQTKQVTDAL-DIDVTGGEQDCDLPTWQRMIDMRAVDI  276 (388)
T ss_dssp             HHHHHHHHHHHTTCCEEE--------C--------CSCTTCHHHHHHHHHHC-SSCEEECTTCCCHHHHHHHHHHTCCSE
T ss_pred             HHHHHHHHHhhcCCeEEE--------C--------CCCccCHHHHHHHHHhc-CCCEEcCCccCCHHHHHHHHHcCCCCE
Confidence            568999999999998872        1        12235899999999998 7999999999999999999975  999


Q ss_pred             EEEehhhhhCCcchHHhHh
Q psy2386         211 VMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       211 VmigRa~l~~P~i~~~~~~  229 (311)
                      |++--+-.+...=..++.+
T Consensus       277 v~~d~~~~GGit~a~kia~  295 (388)
T 3tcs_A          277 VQPDILYLGGICRTLRVVE  295 (388)
T ss_dssp             ECCCHHHHTSHHHHHHHHH
T ss_pred             EEeCccccCCHHHHHHHHH
Confidence            9998776666665555544

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.14  E-value=3.3e-05  Score=70.47  Aligned_cols=147  Identities=12%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             CCCeEEEecCCCH-------HHHHHHHHHHHHcCCCEEEec--cCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          45 EHPIAFQVGDNEP-------KKLAKSAKIIQKWGYDEINLN--CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        45 ~~p~~~Ql~g~~~-------~~~~~aa~~~~~~g~d~IdiN--~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.|+|+.+.++++       +.+...++.+.+.|+|+|++.  .|-+..           -...+.+.++++++.+. ++
T Consensus       105 ~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~~-----------~~~l~~i~~v~~~a~~~-Gl  172 (295)
T 3glc_A          105 NRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYE-----------HQSIKNIIQLVDAGMKV-GM  172 (295)
T ss_dssp             CCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTTH-----------HHHHHHHHHHHHHHHTT-TC
T ss_pred             CccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCcH-----------HHHHHHHHHHHHHHHHc-CC
Confidence            6789999987662       112223455668899998875  441110           01123344555555443 78


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ||.+=...|.....+.+.....++...+.|+|+|...        |++        ..   ++++.+.. .+||++.||+
T Consensus       173 pvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~--------~t~--------e~---~~~vv~~~-~vPVv~~GG~  232 (295)
T 3glc_A          173 PTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY--------YVE--------KG---FERIVAGC-PVPIVIAGGK  232 (295)
T ss_dssp             CEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE--------CCT--------TT---HHHHHHTC-SSCEEEECCS
T ss_pred             EEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC--------CCH--------HH---HHHHHHhC-CCcEEEEECC
Confidence            8877432221111112223457788889999999664        111        12   46677777 6999999999


Q ss_pred             C-CHHHHHHHH----hh-cCEEEEehhhhhCCcc
Q psy2386         196 K-TKKEIDLHL----NY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       196 ~-s~~da~~~l----~~-adgVmigRa~l~~P~i  223 (311)
                      . +.+++.++.    +. |+||.+||.++..|..
T Consensus       233 ~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp  266 (295)
T 3glc_A          233 KLPEREALEMCWQAIDQGASGVDMGRNIFQSDHP  266 (295)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSH
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCH
Confidence            8 555555554    33 9999999999976653

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=98.14  E-value=4e-06  Score=90.33  Aligned_cols=116  Identities=13%  Similarity=0.077  Sum_probs=79.9

Q ss_pred             CChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc-CCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ-NRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~  174 (311)
                      .+++.+.++++.+++.. ++||.||+-....       ..+.++.+.++|+|+|+|.|..+.. +-++.. ....+..-.
T Consensus      1010 ~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~g-------i~~~A~~a~kAGAD~IvVsG~eGGT-gasp~~~~~~~GlPt~ 1081 (1520)
T 1ofd_A         1010 YSIEDLAQLIYDLHQINPEAQVSVKLVAEIG-------IGTIAAGVAKANADIIQISGHDGGT-GASPLSSIKHAGSPWE 1081 (1520)
T ss_dssp             SSHHHHHHHHHHHHHHCTTSEEEEEEECSTT-------HHHHHHHHHHTTCSEEEEECTTCCC-SSEEHHHHHHBCCCHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCCEEEEecCCCC-------hHHHHHHHHHcCCCEEEEeCCCCcc-CCCcchhhcCCchhHH
Confidence            45677889999999988 8999999876421       2456788999999999997653200 000000 000011112


Q ss_pred             HHHHHHHHhC------CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         175 NFVYNLKKDF------PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       175 ~~i~~i~~~~------~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      ..+.++.+.+      .++|||+.|||.|..|+.+++.. ||+|++||+++.-
T Consensus      1082 ~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a 1134 (1520)
T 1ofd_A         1082 LGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIA 1134 (1520)
T ss_dssp             HHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHH
Confidence            4455554432      15999999999999999999987 9999999998663

>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}

Probab=98.12  E-value=1.2e-05  Score=77.21  Aligned_cols=164  Identities=10%  Similarity=0.013  Sum_probs=115.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc---cCcccC--------ccc--------CChHHHHHH
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ---NGFFGA--------ILM--------TKPLLVSDC  105 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~---~~~~G~--------~Ll--------~~~~~~~~i  105 (311)
                      ..|+-....+.+++++.+.++...+.||..|-+..|.|.....   ..+.|-        .+-        +..+...++
T Consensus       138 ~v~~y~~~~~~~~~~~~~~~~~~~~~Gf~~iKikvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  217 (426)
T 4e4f_A          138 GVMVYCHTTGHSIDEVLDDYAKHRDQGFKAIRVQCGVPGMETTYGMAKGKGLAYEPATKGSLPEEQLWSTEKYLDFTPKL  217 (426)
T ss_dssp             SEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEECC-------------------CCSEESSSCCEEEECHHHHHHHHHHH
T ss_pred             ceeEeEeCCCCCHHHHHHHHHHHHHcCCCEEEEeccCCccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence            4466667788899998888877778899999999988742110   001110        000        112456688


Q ss_pred             HHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         106 IKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       106 v~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      +++||+++  ++++.|...-+|+.    ++..++++.+++.|+++|--                ..++.|++..+++++.
T Consensus       218 v~avR~a~G~d~~L~vDaN~~~~~----~~A~~~~~~L~~~~i~~iEe----------------P~~~~d~~~~~~l~~~  277 (426)
T 4e4f_A          218 FEAVRDKFGFNEHLLHDMHHRLTP----IEAARFGKSVEDYRLFWMED----------------PTPAENQACFRLIRQH  277 (426)
T ss_dssp             HHHHHHHHTTSSEEEEECTTCSCH----HHHHHHHHHTGGGCCSEEEC----------------CSCCSSGGGGHHHHTT
T ss_pred             HHHHHHHhCCCCEEEEECCCCCCH----HHHHHHHHHHhhcCCCEEEC----------------CCChHHHHHHHHHHhc
Confidence            99999988  68899988878864    35788999999999998831                1123478888999998


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      + ++||.+.+.+.+++++.++++.  ||.|++--+-.+...-..++.+
T Consensus       278 ~-~iPIa~dE~~~~~~~~~~~i~~ga~d~v~~k~~~~GGit~~~~ia~  324 (426)
T 4e4f_A          278 T-VTPIAVGEVFNSIWDCKQLIEEQLIDYIRTTITHAGGITGMRRIAD  324 (426)
T ss_dssp             C-CSCEEECTTCCSGGGTHHHHHTTCCSEECCCTTTTTHHHHHHHHHH
T ss_pred             C-CCCEEeCCCcCCHHHHHHHHHcCCCCEEEeCccccCCHHHHHHHHH
Confidence            8 7999999999999999999975  9999987666555554444443

>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A

Probab=98.12  E-value=1.8e-05  Score=75.27  Aligned_cols=136  Identities=8%  Similarity=-0.066  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccC-CCCCcHHHH
Q psy2386          59 KLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGI-DDINSYDFV  134 (311)
Q Consensus        59 ~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~-~~~~~~~~~  134 (311)
                      .+++.++...+.||..+-++ .|.+             ..+++.-.++++++|+++  ++++.|...-+| +.    ++.
T Consensus       160 ~~~~~a~~~~~~G~~~~K~~k~g~~-------------~~~~~~d~e~v~avR~a~G~d~~l~vDaN~~~~~~----~~A  222 (394)
T 3mkc_A          160 GYAPLLEKAKAHNIRAVKVCVPIKA-------------DWSTKEVAYYLRELRGILGHDTDMMVDYLYRFTDW----YEV  222 (394)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCTTC-------------CCCHHHHHHHHHHHHHHHCSSSEEEEECTTCCCCH----HHH
T ss_pred             HHHHHHHHHHHcCCCEEEeCccCCC-------------ccCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCCH----HHH
Confidence            66667777778899999994 3321             135777788999999987  678888888788 43    356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVm  212 (311)
                      .++++.+++.|+++|-        +        ..++.|++..+++++.+ ++||++.+.+.|++++.++++.  ||.|+
T Consensus       223 ~~~~~~L~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~  285 (394)
T 3mkc_A          223 ARLLNSIEDLELYFAE--------A--------TLQHDDLSGHAKLVENT-RSRICGAEMSTTRFEAEEWITKGKVHLLQ  285 (394)
T ss_dssp             HHHHHHTGGGCCSEEE--------S--------CSCTTCHHHHHHHHHHC-SSCBEECTTCCHHHHHHHHHHTTCCSEEC
T ss_pred             HHHHHHhhhcCCeEEE--------C--------CCCchhHHHHHHHHhhC-CCCEEeCCCCCCHHHHHHHHHcCCCCeEe
Confidence            8999999999999883        1        11235889999999998 7999999999999999999975  99999


Q ss_pred             EehhhhhCCcchHHhH
Q psy2386         213 LGREAYKNPFLMSNFD  228 (311)
Q Consensus       213 igRa~l~~P~i~~~~~  228 (311)
                      +--+-.+...=..++.
T Consensus       286 ~k~~~~GGit~~~~ia  301 (394)
T 3mkc_A          286 SDYNRCGGLTELRRIT  301 (394)
T ss_dssp             CCTTTTTHHHHHHHHH
T ss_pred             cCccccCCHHHHHHHH
Confidence            9765555544444443

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=98.09  E-value=1.9e-05  Score=88.46  Aligned_cols=148  Identities=12%  Similarity=0.045  Sum_probs=103.0

Q ss_pred             CCCCeEEEecCCCHHH---HHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE
Q psy2386          44 EEHPIAFQVGDNEPKK---LAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT  118 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~---~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs  118 (311)
                      .+.|+++.++-.+|+.   +.+..+.+.+.|++.  |.+..|.|.               ++   ++++.+++ .++++.
T Consensus       636 ~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~---------------~e---~~~~~l~~-~gi~~i  696 (2060)
T 2uva_G          636 PGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPS---------------IE---VANEYIQT-LGIRHI  696 (2060)
T ss_dssp             TTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCC---------------HH---HHHHHHHH-SCCSEE
T ss_pred             cCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCCCC---------------HH---HHHHHHHH-cCCeEE
Confidence            4689999999877653   456667778889988  888877763               22   23333443 377765


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEE---EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFI---VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~it---vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      . +-.+.      .+..+.+..+.++|+|.|+   +.|..  .+|..|.+..  ...-+..+.++++.+ ++|||+.|||
T Consensus       697 ~-~v~~~------~~a~~~v~~l~~aG~D~iV~~q~~G~e--aGGH~g~~d~--~~~~l~lv~~i~~~~-~ipviaaGGI  764 (2060)
T 2uva_G          697 S-FKPGS------VDAIQQVINIAKANPTFPIILQWTGGR--GGGHHSFEDF--HQPILLMYSRIRKCS-NIVLVAGSGF  764 (2060)
T ss_dssp             E-ECCCS------HHHHHHHHHHHHHCTTSCEEEEECCTT--SSSSCCSCCS--HHHHHHHHHHHHTST-TEEEEEESSC
T ss_pred             E-ecCCH------HHHHHHHHHHHHcCCCEEEEeeeEccc--CCCCCCcccc--cchHHHHHHHHHHHc-CCCEEEeCCC
Confidence            3 22221      1356667778999999998   66654  2343332110  012357889999988 8999999999


Q ss_pred             CCHHHHHHHH-----------hh-cCEEEEehhhhhCCc
Q psy2386         196 KTKKEIDLHL-----------NY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       196 ~s~~da~~~l-----------~~-adgVmigRa~l~~P~  222 (311)
                      .|.+++.+++           .. |||||+|+.++.-+.
T Consensus       765 ~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~E  803 (2060)
T 2uva_G          765 GGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKE  803 (2060)
T ss_dssp             CSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTT
T ss_pred             CCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcC
Confidence            9999999999           55 999999999876554

>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A

Probab=98.09  E-value=5.9e-05  Score=71.30  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=108.3

Q ss_pred             CCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          46 HPIAFQVGDNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      .|+-..++..+++.+ .++++.+.+.||..|-+..|+.               +++.-.+.++++|+++  ++++.|...
T Consensus       138 v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDaN  202 (382)
T 3dgb_A          138 LPVAWTLASGDTAKDIAEAQKMLDLRRHRIFKLKIGAG---------------EVDRDLAHVIAIKKALGDSASVRVDVN  202 (382)
T ss_dssp             EEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECCSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECT
T ss_pred             eeEEEEecCCChHHHHHHHHHHHHhCCCCEEEEeeCCC---------------CHHHHHHHHHHHHHHcCCCCeEEEeCC
Confidence            445455555566654 4555555657999999987752               3455567788888877  478889888


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+..    +..++++.+++.|+.+|-        +        ..++.||+..+++++.. ++||.+...+.++.|+.
T Consensus       203 ~~~~~~----~A~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~  261 (382)
T 3dgb_A          203 QAWDEA----VALRACRILGGNGIDLIE--------Q--------PISRNNRAGMVRLNASS-PAPIMADESIECVEDAF  261 (382)
T ss_dssp             TCBCHH----HHHHHHHHHHTTTCCCEE--------C--------CBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHH
T ss_pred             CCCCHH----HHHHHHHHHhhcCcCeee--------C--------CCCccCHHHHHHHHHhC-CCCEEeCCCcCCHHHHH
Confidence            888743    567899999999988882        1        12345899999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++.  +|.|++--+-.+...=..++
T Consensus       262 ~~~~~~~~d~v~~k~~~~GGit~~~~i  288 (382)
T 3dgb_A          262 NLAREGAASVFALKIAKNGGPRATLRT  288 (382)
T ss_dssp             HHHHHTCCSEEEECHHHHTSHHHHHHH
T ss_pred             HHHHcCCCCEEEecccccCCHHHHHHH
Confidence            99975  99999976665554433333

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=98.04  E-value=0.0002  Score=63.76  Aligned_cols=146  Identities=9%  Similarity=0.111  Sum_probs=96.5

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .-++...-.| ++.++...++++..+. |-+.|.|-       +..+.  -.|+-|+....+-.+.+.+. +..|...+-
T Consensus        63 ~~~~lpntaG~~taeeAv~~a~lare~~gt~~iKlE-------vi~d~--~~l~pD~~~tv~aa~~L~k~-Gf~Vlpy~~  132 (268)
T 2htm_A           63 GVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLE-------VIPDP--TYLLPDPLETLKAAERLIEE-DFLVLPYMG  132 (268)
T ss_dssp             TSEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEEBCC-------CCSCT--TTTCCCHHHHHHHHHHHHHT-TCEECCEEC
T ss_pred             hhhccCcccCCCCHHHHHHHHHhhhHhcCcceeeee-------eccCc--cccCcCHHHHHHHHHHHHHC-CCEEeeccC
Confidence            5566666666 6889999999987764 44665443       11111  12666766655555555443 433221121


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKKEI  201 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~da  201 (311)
                           ++     ..+++++++.|++.|.--+.--   | +|     .+..+.+.+..+++..++ +|||.-|||.|++|+
T Consensus       133 -----~D-----~~~ak~l~~~G~~aVmPlg~pI---G-sG-----~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDA  193 (268)
T 2htm_A          133 -----PD-----LVLAKRLAALGTATVMPLAAPI---G-SG-----WGVRTRALLELFAREKASLPPVVVDAGLGLPSHA  193 (268)
T ss_dssp             -----SC-----HHHHHHHHHHTCSCBEEBSSST---T-TC-----CCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHH
T ss_pred             -----CC-----HHHHHHHHhcCCCEEEecCccC---c-CC-----cccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHH
Confidence                 11     4789999999999995433311   1 01     112367789999982248 999999999999999


Q ss_pred             HHHHhh-cCEEEEehhhhh
Q psy2386         202 DLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~  219 (311)
                      ..+++. ||||++|+|+..
T Consensus       194 a~AmeLGAdgVlVgSAI~~  212 (268)
T 2htm_A          194 AEVMELGLDAVLVNTAIAE  212 (268)
T ss_dssp             HHHHHTTCCEEEESHHHHT
T ss_pred             HHHHHcCCCEEEEChHHhC
Confidence            999987 999999999864

>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*

Probab=98.00  E-value=8.1e-06  Score=77.50  Aligned_cols=133  Identities=8%  Similarity=0.009  Sum_probs=100.2

Q ss_pred             ecCCCH-------HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          52 VGDNEP-------KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        52 l~g~~~-------~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      +.+.+|       +.++++|+.+.+.||+.|.++.|-.....      .. .++++...++++++|+.+  ++++.+...
T Consensus       137 ~~~~~~~~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~------~~-~~~~~~~~e~v~avR~~~g~d~~l~vDan  209 (392)
T 3p3b_A          137 FDDLHLADERAAVALMQEEAMQGYAKGQRHFKIKVGRGGRHM------PL-WEGTKRDIAIVRGISEVAGPAGKIMIDAN  209 (392)
T ss_dssp             BTTTTCCSHHHHHHHHHHHHHHHHHTTCCCEEEECCHHHHTS------CH-HHHHHHHHHHHHHHHHHHCTTCCEEEECT
T ss_pred             cCCCCcccccchHHHHHHHHHHHHHhCCCEEEECcCcCcccC------Cc-cccHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence            334678       99999999998999999999866321000      00 235677788999999877  577777766


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-----CCCCeEEEecCCCC
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-----FPELEIIINGGIKT  197 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-----~~~ipvi~nGgI~s  197 (311)
                      -+|+.    ++..++++.+++.|+++|-               +. .+ .|++..+++++.     . ++||.+.+ +.+
T Consensus       210 ~~~~~----~~ai~~~~~l~~~~i~~iE---------------~P-~~-~d~~~~~~l~~~l~~~g~-~iPIa~dE-~~~  266 (392)
T 3p3b_A          210 NAYNL----NLTKEVLAALSDVNLYWLE---------------EA-FH-EDEALYEDLKEWLGQRGQ-NVLIADGE-GLA  266 (392)
T ss_dssp             TCCCH----HHHHHHHHHTTTSCEEEEE---------------CS-SS-CCHHHHHHHHHHHHHHTC-CCEEEECC-SSC
T ss_pred             CCCCH----HHHHHHHHHHHhcCCCEEe---------------cC-Cc-ccHHHHHHHHHhhccCCC-CccEEecC-CCC
Confidence            56653    3578899999998888762               10 12 478889999988     7 79999999 999


Q ss_pred             HHHHHHHHhh--cCEEEEe
Q psy2386         198 KKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       198 ~~da~~~l~~--adgVmig  214 (311)
                      ++++.++++.  +|.|++=
T Consensus       267 ~~~~~~~i~~~~~d~v~ik  285 (392)
T 3p3b_A          267 SPHLIEWATRGRVDVLQYD  285 (392)
T ss_dssp             CTTHHHHHHTTSCCEECCB
T ss_pred             HHHHHHHHHcCCCCEEEeC
Confidence            9999999975  9999873

>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A

Probab=97.99  E-value=5.2e-05  Score=72.56  Aligned_cols=155  Identities=9%  Similarity=0.018  Sum_probs=114.5

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcccccc-----CcccCccc---CChHHHHHHHHHHhccc--
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN-----GFFGAILM---TKPLLVSDCIKAMRDSV--  113 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~-----~~~G~~Ll---~~~~~~~~iv~~v~~~~--  113 (311)
                      +..|+...+.+.+++++.+.++...+.||..+-+..|.+..+..+     .+......   ++++...+.++++|+++  
T Consensus       141 ~~v~~y~~~~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~v~avR~a~G~  220 (421)
T 4hnl_A          141 TAIPAYTHAVADNLDDLYHEIDRFLAAGYRYIRCQLGFYGGNPSQLQTPEEPISGSYFDQTDYMETTLKMFAAIKEKYGN  220 (421)
T ss_dssp             SCEEEEEEEEESSHHHHHHHHHHHHHTTCSEEEEEESCCCCCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccceecccCCCCHHHHHHHHHHHHHhhHHHHhhccccccCCchhccccccccccccccchhHHHHHHHHHHHHHHHhCC
Confidence            345777788889999999999998889999999999976433221     11111122   23456667888888887  


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      ++.+.|...-+|+.    ++..++++.+++.++.++-        +        ..++-|++..+++++.. ++||.+.-
T Consensus       221 ~~~l~vDan~~~~~----~~A~~~~~~l~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~ipIa~dE  279 (421)
T 4hnl_A          221 QFQMLHDVHERLHP----NQAIQFAKAAEPYQLFFLE--------D--------ILPPDQSHWLTQLRSQS-ATPIATGE  279 (421)
T ss_dssp             SSEEEEECTTCSCH----HHHHHHHHHHGGGCCSEEE--------C--------CSCGGGGGGHHHHHTTC-CCCEEECT
T ss_pred             CceEeccccccCCH----HHHHHHHHHhhhhhhcccc--------c--------CCcccchHHHHHHHhcC-CCCeecCc
Confidence            46677766666754    3578999999999988872        1        12335788899999988 79999999


Q ss_pred             CCCCHHHHHHHHhh--cCEEEEehhhhh
Q psy2386         194 GIKTKKEIDLHLNY--IDGVMLGREAYK  219 (311)
Q Consensus       194 gI~s~~da~~~l~~--adgVmigRa~l~  219 (311)
                      .+.++.++.++++.  +|.|++-=.-.+
T Consensus       280 ~~~~~~~~~~~i~~~a~d~v~~d~~~~G  307 (421)
T 4hnl_A          280 LFNNPMEWQELVKNRQIDFMRAHVSQIG  307 (421)
T ss_dssp             TCCSGGGTHHHHHTTCCSEECCCGGGGT
T ss_pred             ceehhHHHHHHHhcCCceEEEeCCCCCC
Confidence            99999999999976  999987543333

>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}

Probab=97.98  E-value=0.00019  Score=67.76  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=107.9

Q ss_pred             CCCeEEEecCCCHHHHHHHH-HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSA-KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa-~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      ..|+-..+...+++.+.+.+ +.+.+.||..|-+..|+.               +++.-.+.++++|+++  ++++.|..
T Consensus       136 ~v~~~~t~~~~~~~~~~~~~~~~~~~~G~~~~KiKvg~~---------------~~~~d~~~v~avR~a~g~~~~l~vDa  200 (381)
T 3fcp_A          136 ALPVLWTLASGDTAKDIAEGEKLLAEGRHRAFKLKIGAR---------------ELATDLRHTRAIVEALGDRASIRVDV  200 (381)
T ss_dssp             EEEBCEEECSSCHHHHHHHHHHHTC----CEEEEECCSS---------------CHHHHHHHHHHHHHHTCTTCEEEEEC
T ss_pred             ceeeEEEecCCChHHHHHHHHHHHHhCCCCEEEEecCCC---------------ChHHHHHHHHHHHHHcCCCCeEEEEC
Confidence            34555566666777655444 444457999999987752               3455667888999887  47888888


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+.+|-        +        ..++.||+..+++++.. ++||.+...+.+..|+
T Consensus       201 N~~~~~----~~A~~~~~~l~~~~i~~iE--------e--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~  259 (381)
T 3fcp_A          201 NQAWDA----ATGAKGCRELAAMGVDLIE--------Q--------PVSAHDNAALVRLSQQI-ETAILADEAVATAYDG  259 (381)
T ss_dssp             TTCBCH----HHHHHHHHHHHHTTCSEEE--------C--------CBCTTCHHHHHHHHHHS-SSEEEESTTCCSHHHH
T ss_pred             CCCCCH----HHHHHHHHHHhhcCcccee--------C--------CCCcccHHHHHHHHHhC-CCCEEECCCcCCHHHH
Confidence            888874    3568899999999998882        1        12335899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      .++++.  +|.|++--+-.+...=..++.
T Consensus       260 ~~~~~~~a~d~v~~k~~~~GGit~~~~ia  288 (381)
T 3fcp_A          260 YQLAQQGFTGAYALKIAKAGGPNSVLALA  288 (381)
T ss_dssp             HHHHHTTCCSEEEECHHHHTSTTHHHHHH
T ss_pred             HHHHHcCCCCEEEecccccCCHHHHHHHH
Confidence            999975  999999877776666555444

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.96  E-value=9.2e-05  Score=65.19  Aligned_cols=144  Identities=15%  Similarity=0.103  Sum_probs=97.5

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----------cccCcccCcccCChHHHHHHHHH------
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----------VQNGFFGAILMTKPLLVSDCIKA------  108 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----------v~~~~~G~~Ll~~~~~~~~iv~~------  108 (311)
                      .+++.=|.+.++++..+.++.+.+.|++.||+-+--|...           ...-|.|+- + +++.+...+++      
T Consensus        34 ~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTV-l-t~~~a~~Ai~AGA~fIv  111 (232)
T 4e38_A           34 LKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTI-L-NGEQALAAKEAGATFVV  111 (232)
T ss_dssp             HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECC-C-SHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCc-C-CHHHHHHHHHcCCCEEE
Confidence            5788889999999999999999999999999976544210           012234442 2 45555544443      


Q ss_pred             -----------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386         109 -----------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       109 -----------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                                 .++. ++|+..-+.       +   ..| +....++|+|+|.+.+-.. ..             ..+++
T Consensus       112 sP~~~~~vi~~~~~~-gi~~ipGv~-------T---ptE-i~~A~~~Gad~vK~FPa~~-~g-------------G~~~l  165 (232)
T 4e38_A          112 SPGFNPNTVRACQEI-GIDIVPGVN-------N---PST-VEAALEMGLTTLKFFPAEA-SG-------------GISMV  165 (232)
T ss_dssp             CSSCCHHHHHHHHHH-TCEEECEEC-------S---HHH-HHHHHHTTCCEEEECSTTT-TT-------------HHHHH
T ss_pred             eCCCCHHHHHHHHHc-CCCEEcCCC-------C---HHH-HHHHHHcCCCEEEECcCcc-cc-------------CHHHH
Confidence                       2221 444433222       1   122 4455788999998865431 11             35889


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      +.++..+|++|++..|||. ++.+.++++. +.++.+|+.+.
T Consensus       166 kal~~p~p~ip~~ptGGI~-~~n~~~~l~aGa~~~vgGs~l~  206 (232)
T 4e38_A          166 KSLVGPYGDIRLMPTGGIT-PSNIDNYLAIPQVLACGGTWMV  206 (232)
T ss_dssp             HHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGG
T ss_pred             HHHHHHhcCCCeeeEcCCC-HHHHHHHHHCCCeEEEECchhc
Confidence            9999988889999999995 8999999986 88888886554

>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}

Probab=97.92  E-value=0.00013  Score=70.38  Aligned_cols=139  Identities=9%  Similarity=-0.030  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      |.+|+++++.|+...+.||..|-++.|+                +++.-.+.++++|+++  ++++.|...-+|+..   
T Consensus       199 ~~~~e~~~~~a~~~~~~Gf~~~KlKvG~----------------~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~---  259 (441)
T 4a35_A          199 GYSDDTLKQLCAQALKDGWTRFKVKVGA----------------DLQDDMRRCQIIRDMIGPEKTLMMDANQRWDVP---  259 (441)
T ss_dssp             TCCHHHHHHHHHHHHHTTCCEEEEECSS----------------CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHH---
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHH---
Confidence            5699999999998888899999999775                3455566788888886  578888888888743   


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh---CCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD---FPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~---~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                       +..++++.+++.++.+|-               + ..++-|++..+++++.   . ++||.+.-.+.|..++.++++. 
T Consensus       260 -~A~~~~~~L~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~l~~~-~iPIa~gE~~~~~~~~~~~l~~~  321 (441)
T 4a35_A          260 -EAVEWMSKLAKFKPLWIE---------------E-PTSPDDILGHATISKALVPL-GIGIATGEQCHNRVIFKQLLQAK  321 (441)
T ss_dssp             -HHHHHHHHHGGGCCSEEE---------------C-CSCTTCHHHHHHHHHHHGGG-TCEEEECTTCCSHHHHHHHHHTT
T ss_pred             -HHHHHHHhhcccCccEEe---------------C-CCCcccHHHHHHHHHhccCC-CCCEEeCCccccHHHHHHHHHcC
Confidence             568999999999988881               1 1223578888888886   5 6999999999999999999975 


Q ss_pred             -cCEEEEehhhhhCCcchHHhHh
Q psy2386         208 -IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       208 -adgVmigRa~l~~P~i~~~~~~  229 (311)
                       +|.|++--+-.+...=..++.+
T Consensus       322 a~div~~d~~~~GGit~~~kia~  344 (441)
T 4a35_A          322 ALQFLQIDSCRLGSVNENLSVLL  344 (441)
T ss_dssp             CCSEECCCTTTSSHHHHHHHHHH
T ss_pred             CCCEEEECccccCCHHHHHHHHH
Confidence             9999987655555544444443

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=97.92  E-value=0.00013  Score=64.39  Aligned_cols=136  Identities=13%  Similarity=0.062  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~g~~~~~~~  131 (311)
                      ...+.-..-++.+.+.|+|.||+.+-          .|+.. .   .+.+=+.++++.+   +.|+-|=+-.+.-.   .
T Consensus        85 ~~~~~k~~e~~~Av~~GAdEID~vin----------ig~~~-~---~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~---~  147 (234)
T 1n7k_A           85 APLEVKLVEAQTVLEAGATELDVVPH----------LSLGP-E---AVYREVSGIVKLAKSYGAVVKVILEAPLWD---D  147 (234)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEECCC----------GGGCH-H---HHHHHHHHHHHHHHHTTCEEEEECCGGGSC---H
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecc----------chHHH-H---HHHHHHHHHHHHHhhcCCeEEEEEeccCCC---H
Confidence            34454555566777889999998521          22211 1   4444455555554   35653333333222   2


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH--HHHhCCCCeEEEecCCCCHHHHHHHHhh-c
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN--LKKDFPELEIIINGGIKTKKEIDLHLNY-I  208 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~--i~~~~~~ipvi~nGgI~s~~da~~~l~~-a  208 (311)
                      ++....++...++|+|+|...      .||++.     +.+..+.++-  +++.+. +||-+.|||+|.+|+.++++. +
T Consensus       148 e~i~~a~ria~eaGADfVKTs------TG~~~~-----~gAt~~dv~l~~m~~~v~-v~VKaaGGirt~~~al~~i~aGa  215 (234)
T 1n7k_A          148 KTLSLLVDSSRRAGADIVKTS------TGVYTK-----GGDPVTVFRLASLAKPLG-MGVKASGGIRSGIDAVLAVGAGA  215 (234)
T ss_dssp             HHHHHHHHHHHHTTCSEEESC------CSSSCC-----CCSHHHHHHHHHHHGGGT-CEEEEESSCCSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeC------CCCCCC-----CCCCHHHHHHHHHHHHHC-CCEEEecCCCCHHHHHHHHHcCc
Confidence            356778888899999999542      333320     1256666666  777774 999999999999999999976 9


Q ss_pred             C--EEEEehhhhh
Q psy2386         209 D--GVMLGREAYK  219 (311)
Q Consensus       209 d--gVmigRa~l~  219 (311)
                      +  |+..|+.++.
T Consensus       216 ~RiG~S~g~~I~~  228 (234)
T 1n7k_A          216 DIIGTSSAVKVLE  228 (234)
T ss_dssp             SEEEETTHHHHHH
T ss_pred             cccchHHHHHHHH
Confidence            9  7777766553

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=97.92  E-value=0.00049  Score=61.12  Aligned_cols=141  Identities=13%  Similarity=0.135  Sum_probs=100.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.--=|=-||-++.+|.    .+|+|.|=|-+.|-               +++.+.++++..++ .+..+-|-+.. 
T Consensus       104 ~lPvLrKDFiid~yQI~eAr----~~GADaILLI~a~L---------------~~~~l~~l~~~A~~-lGl~~LvEVh~-  162 (258)
T 4a29_A          104 SIPILMSDFIVKESQIDDAY----NLGADTVLLIVKIL---------------TERELESLLEYARS-YGMEPLILIND-  162 (258)
T ss_dssp             SSCEEEESCCCSHHHHHHHH----HHTCSEEEEEGGGS---------------CHHHHHHHHHHHHH-TTCCCEEEESS-
T ss_pred             CCCEeeccccccHHHHHHHH----HcCCCeeehHHhhc---------------CHHHHHHHHHHHHH-HhHHHHHhcch-
Confidence            45554444445566655443    46888888865442               34556677766554 57777775542 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~  203 (311)
                               ..| ++++.+.|++.|-|..|.-  .-+         ..|.+...++...+| ++.+|+-+||.|++|+.+
T Consensus       163 ---------~~E-l~rAl~~~a~iIGINNRnL--~tf---------~vdl~~t~~L~~~ip~~~~~VsESGI~t~~dv~~  221 (258)
T 4a29_A          163 ---------END-LDIALRIGARFIGIMSRDF--ETG---------EINKENQRKLISMIPSNVVKVAKLGISERNEIEE  221 (258)
T ss_dssp             ---------HHH-HHHHHHTTCSEEEECSBCT--TTC---------CBCHHHHHHHHTTSCTTSEEEEEESSCCHHHHHH
T ss_pred             ---------HHH-HHHHhcCCCcEEEEeCCCc--ccc---------ccCHHHHHHHHhhCCCCCEEEEcCCCCCHHHHHH
Confidence                     123 4556678999999988863  222         268888899998876 588999999999999999


Q ss_pred             HHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         204 HLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       204 ~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      +.+. +|+|.||.+++.+|.-.+++
T Consensus       222 l~~~G~~a~LVGealmr~~d~~~~L  246 (258)
T 4a29_A          222 LRKLGVNAFLISSSLMRNPEKIKEL  246 (258)
T ss_dssp             HHHTTCCEEEECHHHHHCTTHHHHH
T ss_pred             HHHCCCCEEEECHHHhCCCcHHHHH
Confidence            9877 99999999999999855444

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.90  E-value=8.4e-05  Score=65.20  Aligned_cols=168  Identities=15%  Similarity=0.102  Sum_probs=105.9

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----c------ccCcccCcccCChHHHHHHHH------
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----V------QNGFFGAILMTKPLLVSDCIK------  107 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v------~~~~~G~~Ll~~~~~~~~iv~------  107 (311)
                      +.|++.=|-+.+++++.+.++.+.+.|++.|++-+--|...     .      ..-++|. ++ +.+.+...++      
T Consensus        16 ~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGt-vl-~~d~~~~A~~aGAd~v   93 (224)
T 1vhc_A           16 ELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGT-VL-TAEQVVLAKSSGADFV   93 (224)
T ss_dssp             HHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEES-CC-SHHHHHHHHHHTCSEE
T ss_pred             HCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCc-Ee-eHHHHHHHHHCCCCEE
Confidence            35788888889999988888888888999999975433210     0      0112344 22 3444433332      


Q ss_pred             -----------HHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386         108 -----------AMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF  176 (311)
Q Consensus       108 -----------~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~  176 (311)
                                 ..++ .+.|+.+    |..   +   ..+ +..+.+.|+|+|.+++-.. .             .-.++
T Consensus        94 ~~p~~d~~v~~~ar~-~g~~~i~----Gv~---t---~~e-~~~A~~~Gad~vk~Fpa~~-~-------------gG~~~  147 (224)
T 1vhc_A           94 VTPGLNPKIVKLCQD-LNFPITP----GVN---N---PMA-IEIALEMGISAVKFFPAEA-S-------------GGVKM  147 (224)
T ss_dssp             ECSSCCHHHHHHHHH-TTCCEEC----EEC---S---HHH-HHHHHHTTCCEEEETTTTT-T-------------THHHH
T ss_pred             EECCCCHHHHHHHHH-hCCCEEe----ccC---C---HHH-HHHHHHCCCCEEEEeeCcc-c-------------cCHHH
Confidence                       2222 2333332    211   1   123 4556788999998876211 0             12578


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHHHHHHH
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINRMILYI  254 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
                      +++++..+|++|+++.||| +++.+.++++.  +++|. |++++..+.+-               ..++.++.+...+++
T Consensus       148 lk~l~~~~~~ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~~~~~i~---------------~~~~~~i~~~a~~~~  210 (224)
T 1vhc_A          148 IKALLGPYAQLQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFVEKKLIQ---------------SNNWDEIGRLVREVI  210 (224)
T ss_dssp             HHHHHTTTTTCEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGCHHHHH---------------TTCHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCeEEEECCc-CHHHHHHHHhcCCCEEEE-EchhcCcchhc---------------cCCHHHHHHHHHHHH
Confidence            9999998878999999999 46899999974  99999 98887655431               134556666666666


Q ss_pred             HHH
Q psy2386         255 RQQ  257 (311)
Q Consensus       255 ~~~  257 (311)
                      +..
T Consensus       211 ~~~  213 (224)
T 1vhc_A          211 DII  213 (224)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=97.88  E-value=0.00012  Score=66.12  Aligned_cols=128  Identities=15%  Similarity=0.092  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEec--cCCCCC
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHRI--GIDDIN  129 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~--g~~~~~  129 (311)
                      ...+.-+.=++.+.+.|+|.||+=+          .+|..+-   .+.+.+.+-+++++++++ +..+|+=+  +.-.++
T Consensus        97 ~~~e~K~~Ea~~Av~~GAdEIDmVi----------nig~lk~~~~g~~~~V~~eI~~v~~a~~-~~~lKVIlEt~~Lt~~  165 (297)
T 4eiv_A           97 GTPDTVSLEAVGALKDGADEIECLI----------DWRRMNENVADGESRIRLLVSEVKKVVG-PKTLKVVLSGGELQGG  165 (297)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEC----------CTHHHHHCHHHHHHHHHHHHHHHHHHHT-TSEEEEECCSSCCCCH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeee----------eHHHHhcccCCcHHHHHHHHHHHHHHhc-CCceEEEEecccCCcH
Confidence            3444444445566677999999731          1444444   467888888899988874 44566544  332222


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-----------------------CC
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-----------------------PE  186 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-----------------------~~  186 (311)
                        +.....++...++|+|+|--.      .|+++      +.+..+.++-+++.+                       ++
T Consensus       166 --e~i~~A~~ia~~AGADFVKTS------TGf~~------~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~  231 (297)
T 4eiv_A          166 --DIISRAAVAALEGGADFLQTS------SGLGA------THATMFTVHLISIALREYMVRENERIRVEGINREGAAVRC  231 (297)
T ss_dssp             --HHHHHHHHHHHHHTCSEEECC------CSSSS------CCCCHHHHHHHHHHHHHHHCC------------------C
T ss_pred             --HHHHHHHHHHHHhCCCEEEcC------CCCCC------CCCCHHHHHHHHHHHHHHhccccccccccccccccccCCc
Confidence              124567788889999999533      33321      123444333333222                       36


Q ss_pred             CeEEEe-cCCCCHHHHHHHHhh
Q psy2386         187 LEIIIN-GGIKTKKEIDLHLNY  207 (311)
Q Consensus       187 ipvi~n-GgI~s~~da~~~l~~  207 (311)
                      +-|=+. |||+|.+|+.++++.
T Consensus       232 vgvKAs~GGIrt~e~A~~~i~~  253 (297)
T 4eiv_A          232 IGIKIEVGDVHMAETADFLMQM  253 (297)
T ss_dssp             CEEEEECTTCCHHHHHHHHHHH
T ss_pred             eeEEecCCCCCCHHHHHHHHHH
Confidence            889999 999999999999975

>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}

Probab=97.87  E-value=0.00019  Score=67.40  Aligned_cols=137  Identities=11%  Similarity=0.101  Sum_probs=103.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|+-..+...+|+.+++.++...+.||..|-+..|..               +++.-.+.++++|+.+ +.++.|...-
T Consensus       132 ~v~~~~~~~~~~~e~~~~~a~~~~~~G~~~iK~Kvg~~---------------~~~~d~~~v~avr~~~~~~~l~vDaN~  196 (365)
T 3ik4_A          132 QLETDMTITAGDEVHAAASAKAILARGIKSIKVKTAGV---------------DVAYDLARLRAIHQAAPTAPLIVDGNC  196 (365)
T ss_dssp             EEEBCEEECCSCHHHHHHHHHHHHHTTCCCEEEECCSS---------------CHHHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred             ceeeeEEecCCCHHHHHHHHHHHHHcCCCEEEEEeCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            44556678888999999999888888999999987642               3566667788888876 4456665555


Q ss_pred             cCCCCCcHHHHHHHHHHH--HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTV--SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l--~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +|+.    ++..++++.+  ++.++.+|-               + ..++.|++..+++++.. .+||.+.-.+.+++++
T Consensus       197 ~~~~----~~A~~~~~~L~~~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~  255 (365)
T 3ik4_A          197 GYDV----ERALAFCAACKAESIPMVLFE---------------Q-PLPREDWAGMAQVTAQS-GFAVAADESARSAHDV  255 (365)
T ss_dssp             CCCH----HHHHHHHHHHHHTTCCEEEEE---------------C-CSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHH
T ss_pred             CCCH----HHHHHHHHHHhhCCCCceEEE---------------C-CCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence            6653    3567899999  556665552               1 12235899999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhh
Q psy2386         202 DLHLNY--IDGVMLGREA  217 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~  217 (311)
                      .++++.  +|.|++==.-
T Consensus       256 ~~~i~~~a~d~v~ik~~~  273 (365)
T 3ik4_A          256 LRIAREGTASVINIKLMK  273 (365)
T ss_dssp             HHHHHHTCCSEEEECHHH
T ss_pred             HHHHHhCCCCEEEEcCCc
Confidence            999875  9999986444

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=97.85  E-value=0.00017  Score=63.46  Aligned_cols=149  Identities=12%  Similarity=0.099  Sum_probs=100.8

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      +..+|...|...+.++.+.+ +.|+|.  ||+=-|.=+++.   .+|          ..+++++|+.++.|+.|-+-+. 
T Consensus         3 i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~---t~G----------~~~v~~lr~~~~~~~dvhLmv~-   67 (231)
T 3ctl_A            3 ISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNL---TLS----------PFFVSQVKKLATKPLDCHLMVT-   67 (231)
T ss_dssp             EEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCC---CBC----------HHHHHHHHTTCCSCEEEEEESS-
T ss_pred             EEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccc---hhc----------HHHHHHHHhccCCcEEEEEEec-
Confidence            56788899999999999999 889997  565445522221   122          2478888888788888776653 


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCc-cc--------------------------------------------ccc
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARN-AF--------------------------------------------LKK  160 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt-~~--------------------------------------------~~G  160 (311)
                       +.      ..+++.+.++|+|.+|+|.-. ..                                            ..|
T Consensus        68 -dp------~~~i~~~~~aGAd~itvh~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pG  140 (231)
T 3ctl_A           68 -RP------QDYIAQLARAGADFITLHPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPG  140 (231)
T ss_dssp             -CG------GGTHHHHHHHTCSEEEECGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTT
T ss_pred             -CH------HHHHHHHHHcCCCEEEECcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccC
Confidence             21      235677788899999988543 10                                            002


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHhh-cCEEEEe-hhhhhCCc
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLNY-IDGVMLG-REAYKNPF  222 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~~-adgVmig-Ra~l~~P~  222 (311)
                      +.|.  .. .+..++.|+++++...    +++|..-|||+ ++.+.++.+. ||.+.+| |+++..+.
T Consensus       141 fggQ--~f-~~~~l~kI~~lr~~~~~~~~~~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif~~~d  204 (231)
T 3ctl_A          141 FAGQ--PF-IPEMLDKLAELKAWREREGLEYEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLFNHAE  204 (231)
T ss_dssp             CSSC--CC-CTTHHHHHHHHHHHHHHHTCCCEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTGGGCS
T ss_pred             cCCc--cc-cHHHHHHHHHHHHHHhccCCCceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHhCCCC
Confidence            2211  11 2234666777766531    58999999998 5778888766 9999999 99987544

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=97.83  E-value=0.00019  Score=65.50  Aligned_cols=153  Identities=14%  Similarity=0.127  Sum_probs=101.2

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      +.|+++=+   +| +|+...+.++.+.++|+.+|.|-=+.. +|.+..-.|-.|....+.+.+|-.++....+.++.|--
T Consensus        83 ~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~-~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~A  160 (298)
T 3eoo_A           83 NLPLLVDIDTGWG-GAFNIARTIRSFIKAGVGAVHLEDQVG-QKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMA  160 (298)
T ss_dssp             CSCEEEECTTCSS-SHHHHHHHHHHHHHTTCSEEEEECBCC-CCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEE
T ss_pred             CCeEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEECCCCC-CcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            46777765   34 899999999999999999999975542 33222222334443344455554443333356777777


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC---C
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG---I  195 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg---I  195 (311)
                      |..-......++.++-++.+.++|+|.|-+++.+                 +.+.++++.+.+ ++||.+|   ||   .
T Consensus       161 RTDa~~~~gldeai~Ra~ay~~AGAD~if~~~~~-----------------~~ee~~~~~~~~-~~Pl~~n~~~~g~tp~  222 (298)
T 3eoo_A          161 RTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMK-----------------TLDDYRRFKEAV-KVPILANLTEFGSTPL  222 (298)
T ss_dssp             EECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCC-----------------SHHHHHHHHHHH-CSCBEEECCTTSSSCC
T ss_pred             eehhhhhcCHHHHHHHHHhhHhcCCCEEEeCCCC-----------------CHHHHHHHHHHc-CCCeEEEeccCCCCCC
Confidence            8632212234567888899999999999998764                 568899999998 6999887   33   3


Q ss_pred             CCHHHHHHHHhhcCEEEEehhhhh
Q psy2386         196 KTKKEIDLHLNYIDGVMLGREAYK  219 (311)
Q Consensus       196 ~s~~da~~~l~~adgVmigRa~l~  219 (311)
                      .|.++..++  ++..|..|-.++.
T Consensus       223 ~~~~eL~~l--Gv~~v~~~~~~~r  244 (298)
T 3eoo_A          223 FTLDELKGA--NVDIALYCCGAYR  244 (298)
T ss_dssp             CCHHHHHHT--TCCEEEECSHHHH
T ss_pred             CCHHHHHHc--CCeEEEEchHHHH
Confidence            344443332  3899998866644

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=97.77  E-value=0.00063  Score=59.15  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----c------ccCcccCcccCChHHHHHHHHH-----
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----V------QNGFFGAILMTKPLLVSDCIKA-----  108 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v------~~~~~G~~Ll~~~~~~~~iv~~-----  108 (311)
                      +.|++.=|-+.+++++.+.++.+.+.|++.|++-+--|...     .      ..-++|. ++ +.+.+...+++     
T Consensus        15 ~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagt-vi-~~d~~~~A~~aGAd~v   92 (214)
T 1wbh_A           15 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGT-VL-NPQQLAEVTEAGAQFA   92 (214)
T ss_dssp             SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEES-CC-SHHHHHHHHHHTCSCE
T ss_pred             HCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCE-EE-EHHHHHHHHHcCCCEE
Confidence            57899999999999999999999999999999976444211     0      0113333 22 33433333222     


Q ss_pred             ------------HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH
Q psy2386         109 ------------MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF  176 (311)
Q Consensus       109 ------------v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~  176 (311)
                                  .++ .++|+..    |..   +   ..| +..+.+.|+|+|.+|+-.. .             ...++
T Consensus        93 ~~p~~d~~v~~~~~~-~g~~~i~----G~~---t---~~e-~~~A~~~Gad~v~~Fpa~~-~-------------gG~~~  146 (214)
T 1wbh_A           93 ISPGLTEPLLKAATE-GTIPLIP----GIS---T---VSE-LMLGMDYGLKEFKFFPAEA-N-------------GGVKA  146 (214)
T ss_dssp             EESSCCHHHHHHHHH-SSSCEEE----EES---S---HHH-HHHHHHTTCCEEEETTTTT-T-------------THHHH
T ss_pred             EcCCCCHHHHHHHHH-hCCCEEE----ecC---C---HHH-HHHHHHCCCCEEEEecCcc-c-------------cCHHH
Confidence                        111 2233322    211   1   123 3555678888888866211 0             12578


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcc
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFL  223 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i  223 (311)
                      +++++..+|++|+++.|||+ ++.+.++++.  +++|. |++++..+.+
T Consensus       147 lk~i~~~~~~ipvvaiGGI~-~~n~~~~l~agg~~~v~-gS~i~~~~~~  193 (214)
T 1wbh_A          147 LQAIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIG-GSWLVPADAL  193 (214)
T ss_dssp             HHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEE-EGGGSCHHHH
T ss_pred             HHHHhhhCCCCeEEEECCCC-HHHHHHHHhcCCCeEEE-eccccChhhh
Confidence            99999988789999999995 6899999974  99999 9988766554

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=97.75  E-value=0.00072  Score=61.93  Aligned_cols=133  Identities=11%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             HHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec-c--CCCCCcH-HHHH
Q psy2386          62 KSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-G--IDDINSY-DFVR  135 (311)
Q Consensus        62 ~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~-g--~~~~~~~-~~~~  135 (311)
                      ..++.+.+.|+|+|-+  +.+-..+.          .+..+.+.++.+++++ .++|+.+=+-. |  ..++... +...
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~d~~~----------~~~~~~i~~v~~~~~~-~G~p~lv~~~~~g~~v~~~~~~~~~v~  180 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRSDEDA----------QQRLNMVKEFNELCHS-NGLLSIIEPVVRPPRCGDKFDREQAII  180 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECTTSCH----------HHHHHHHHHHHHHHHT-TTCEEEEEEEECCCSSCSCCCHHHHHH
T ss_pred             hhHHHHHHcCCCEEEEEEEcCCCccH----------HHHHHHHHHHHHHHHH-cCCcEEEEEECCCCccccCCChhHHHH
Confidence            4556677889999984  33311100          1223555666666555 48998776532 1  2221222 3455


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh----CCCCe-EEEecCCCCHHH----HHHHHh
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD----FPELE-IIINGGIKTKKE----IDLHLN  206 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~----~~~ip-vi~nGgI~s~~d----a~~~l~  206 (311)
                      +.++.+.+.|+|++.+|.-..   ++          .+++.+.++.+.    + .+| |+..||+ +.++    +...++
T Consensus       181 ~aa~~a~~lGaD~iKv~~~~~---~~----------g~~~~~~~vv~~~~~~~-~~P~Vv~aGG~-~~~~~~~~~~~a~~  245 (304)
T 1to3_A          181 DAAKELGDSGADLYKVEMPLY---GK----------GARSDLLTASQRLNGHI-NMPWVILSSGV-DEKLFPRAVRVAME  245 (304)
T ss_dssp             HHHHHHTTSSCSEEEECCGGG---GC----------SCHHHHHHHHHHHHHTC-CSCEEECCTTS-CTTTHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCCCcC---CC----------CCHHHHHHHHHhccccC-CCCeEEEecCC-CHHHHHHHHHHHHH
Confidence            668888999999999986421   11          156666666666    6 699 9999999 5644    455554


Q ss_pred             h-cCEEEEehhhhhC
Q psy2386         207 Y-IDGVMLGREAYKN  220 (311)
Q Consensus       207 ~-adgVmigRa~l~~  220 (311)
                      . ++||.+||+++..
T Consensus       246 aGa~Gv~vGRaI~q~  260 (304)
T 1to3_A          246 AGASGFLAGRAVWSS  260 (304)
T ss_dssp             TTCCEEEESHHHHGG
T ss_pred             cCCeEEEEehHHhCc
Confidence            4 9999999999876

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=97.74  E-value=0.00059  Score=62.03  Aligned_cols=153  Identities=12%  Similarity=0.069  Sum_probs=97.5

Q ss_pred             CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCccc--CcccCChHHHHHHHHHHhccc-ccee
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFG--AILMTKPLLVSDCIKAMRDSV-EIDI  117 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G--~~Ll~~~~~~~~iv~~v~~~~-~~pv  117 (311)
                      .+.|+++=+=   | +|+...+.++.+.++|+.+|.|-=+.. ++++. +.|  +.-+-..+...+-|++++++. ..++
T Consensus        74 ~~~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~-~k~cg-H~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~  150 (290)
T 2hjp_A           74 VSIPLIADIDTGFG-NAVNVHYVVPQYEAAGASAIVMEDKTF-PKDTS-LRTDGRQELVRIEEFQGKIAAATAARADRDF  150 (290)
T ss_dssp             CSSCEEEECTTTTS-SHHHHHHHHHHHHHHTCSEEEEECBCS-SCCC--------CCBCCHHHHHHHHHHHHHHCSSTTS
T ss_pred             CCCCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCC-Ccccc-ccccCCCcccCHHHHHHHHHHHHHhcccCCc
Confidence            3578777553   5 899999999988899999999986643 23322 223  333344444444445555442 3455


Q ss_pred             EEEEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC--CeEEEe--
Q psy2386         118 TVKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE--LEIIIN--  192 (311)
Q Consensus       118 svKiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~--ipvi~n--  192 (311)
                      .|--|..-. .....++.++-++.++++|+|.|.++++..                +.+.++++.+.+ +  +|+++|  
T Consensus       151 ~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~~----------------~~~~~~~i~~~~-~~~vP~i~n~~  213 (290)
T 2hjp_A          151 VVIARVEALIAGLGQQEAVRRGQAYEEAGADAILIHSRQK----------------TPDEILAFVKSW-PGKVPLVLVPT  213 (290)
T ss_dssp             EEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCCS----------------SSHHHHHHHHHC-CCSSCEEECGG
T ss_pred             EEEEeehHhhccccHHHHHHHHHHHHHcCCcEEEeCCCCC----------------CHHHHHHHHHHc-CCCCCEEEecc
Confidence            565665322 122356788899999999999999998531                457789999998 6  999987  


Q ss_pred             -cCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         193 -GGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       193 -GgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                       +...|.++..++  + +..|..|-.++
T Consensus       214 ~~~~~~~~eL~~l--G~v~~v~~~~~~~  239 (290)
T 2hjp_A          214 AYPQLTEADIAAL--SKVGIVIYGNHAI  239 (290)
T ss_dssp             GCTTSCHHHHHTC--TTEEEEEECSHHH
T ss_pred             CCCCCCHHHHHhc--CCeeEEEechHHH
Confidence             334454433322  4 66677776654

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=97.73  E-value=0.00025  Score=64.07  Aligned_cols=127  Identities=13%  Similarity=0.116  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChH---HHHHHHHHHhccccceeEEEEec--cCCCCCc
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPL---LVSDCIKAMRDSVEIDITVKHRI--GIDDINS  130 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~---~~~~iv~~v~~~~~~pvsvKiR~--g~~~~~~  130 (311)
                      +.+.-+.-++.+.+.|+|.||+-+          .+|..+-.+.+   .+.+-+.+++++++ +..+|+=+  +.-.++ 
T Consensus       104 ~~~~Kv~E~~~Av~~GAdEIDmVi----------nig~lksg~~~~~~~v~~eI~~v~~a~~-~~~lKVIlEt~~L~d~-  171 (281)
T 2a4a_A          104 SMEKVLNDTEKALDDGADEIDLVI----------NYKKIIENTDEGLKEATKLTQSVKKLLT-NKILKVIIEVGELKTE-  171 (281)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEC----------CHHHHHHSHHHHHHHHHHHHHHHHTTCT-TSEEEEECCHHHHCSH-
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEec----------chHhhhCCChhHHHHHHHHHHHHHHHhc-CCceEEEEecccCCcH-
Confidence            344444445667778999999852          13433345567   88888888988874 23455443  222211 


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc---HHHHHHHHHh--------CCCCeEEEecCCCCHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK---YNFVYNLKKD--------FPELEIIINGGIKTKK  199 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~---~~~i~~i~~~--------~~~ipvi~nGgI~s~~  199 (311)
                       +.....++...++|+|+|--.      .||++      +.+.   .+.+++..+.        -++++|-+.|||+|.+
T Consensus       172 -e~i~~A~~ia~eaGADfVKTS------TGf~~------~gAT~edv~lm~~~v~~~~~~~~~tg~~vgVKaaGGIrt~e  238 (281)
T 2a4a_A          172 -DLIIKTTLAVLNGNADFIKTS------TGKVQ------INATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLN  238 (281)
T ss_dssp             -HHHHHHHHHHHTTTCSEEECC------CSCSS------CCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHH
T ss_pred             -HHHHHHHHHHHHhCCCEEEeC------CCCCC------CCCCHHHHHHHHHHHHHhhcccccCCCCceEEEeCCCCCHH
Confidence             124567788889999999543      23331      1133   3444444321        2369999999999999


Q ss_pred             HHHHHHhh
Q psy2386         200 EIDLHLNY  207 (311)
Q Consensus       200 da~~~l~~  207 (311)
                      |+.++++.
T Consensus       239 ~al~~i~a  246 (281)
T 2a4a_A          239 TASHYILL  246 (281)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999964

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=97.72  E-value=0.00026  Score=63.33  Aligned_cols=128  Identities=13%  Similarity=0.109  Sum_probs=82.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc---ceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---IDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~---~pvsvKiR~g~~~~~~~~  132 (311)
                      +.+.-..-++.+.+.|+|.||+-+          .+|..+-.+.+.+.+-+.++++.++   .|+-|=+-.+.-.++  +
T Consensus        83 ~~~~Kv~E~~~Av~~GAdEIDmVi----------nig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~--e  150 (260)
T 1p1x_A           83 DIDIALAETRAAIAYGADEVDVVF----------PYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDE--A  150 (260)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSH--H
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEec----------cHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcH--H
Confidence            344444445667778999999852          1344444677888888888888763   444333333322221  1


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-----F-PELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~  206 (311)
                      .....++...++|+|+|--.      .||++      +.+..+.++-+++.     + ++++|-+.|||+|.+|+.++++
T Consensus       151 ~i~~a~~ia~eaGADfVKTS------TGf~~------~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~  218 (260)
T 1p1x_A          151 LIRKASEISIKAGADFIKTS------TGKVA------VNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLA  218 (260)
T ss_dssp             HHHHHHHHHHHTTCSEEECC------CSCSS------CCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEeC------CCCCC------CCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHH
Confidence            24577888899999999543      33331      12566655554444     2 3699999999999999999986


Q ss_pred             h
Q psy2386         207 Y  207 (311)
Q Consensus       207 ~  207 (311)
                      .
T Consensus       219 a  219 (260)
T 1p1x_A          219 I  219 (260)
T ss_dssp             H
T ss_pred             h
Confidence            4

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.72  E-value=0.001  Score=64.96  Aligned_cols=130  Identities=18%  Similarity=0.254  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      |-.++.+.++..+ .++|+|.|-|....               -+.+.+.+.++.+++.. +++|.+---.         
T Consensus       277 gv~~d~~eR~~aL-v~AGvD~iviD~ah---------------Ghs~~v~~~i~~ik~~~p~~~viaGNVa---------  331 (556)
T 4af0_A          277 GTRPGDKDRLKLL-AEAGLDVVVLDSSQ---------------GNSVYQIEFIKWIKQTYPKIDVIAGNVV---------  331 (556)
T ss_dssp             CSSHHHHHHHHHH-HHTTCCEEEECCSC---------------CCSHHHHHHHHHHHHHCTTSEEEEEEEC---------
T ss_pred             ccCccHHHHHHHH-HhcCCcEEEEeccc---------------cccHHHHHHHHHHHhhCCcceEEecccc---------
Confidence            6677878777664 46799998886322               12356778888888876 6777663221         


Q ss_pred             HHHHHHHHHHHcCCCEEEEec------CccccccCCCCcCCCCCcCcHHHHHHH---HHhCCCCeEEEecCCCCHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHA------RNAFLKKLNPKQNRKIPILKYNFVYNL---KKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~------Rt~~~~G~~g~~~~~~~~~~~~~i~~i---~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                       +.+-++.|.++|+|.|.|--      .|+...|..        -.-...|.++   ++.. .+|||+-|||++.-|+.+
T Consensus       332 -T~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG--------~PQ~tAi~~~a~~a~~~-~vpvIADGGI~~sGDi~K  401 (556)
T 4af0_A          332 -TREQAAQLIAAGADGLRIGMGSGSICITQEVMAVG--------RPQGTAVYAVAEFASRF-GIPCIADGGIGNIGHIAK  401 (556)
T ss_dssp             -SHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSC--------CCHHHHHHHHHHHHGGG-TCCEEEESCCCSHHHHHH
T ss_pred             -CHHHHHHHHHcCCCEEeecCCCCcccccccccCCC--------CcHHHHHHHHHHHHHHc-CCCEEecCCcCcchHHHH
Confidence             24678889999999998741      122222321        1223344444   4455 699999999999999999


Q ss_pred             HHhh-cCEEEEehhhh
Q psy2386         204 HLNY-IDGVMLGREAY  218 (311)
Q Consensus       204 ~l~~-adgVmigRa~l  218 (311)
                      .+.. ||.||+|+-+-
T Consensus       402 AlaaGAd~VMlGsllA  417 (556)
T 4af0_A          402 ALALGASAVMMGGLLA  417 (556)
T ss_dssp             HHHTTCSEEEESTTTT
T ss_pred             HhhcCCCEEEEchhhc
Confidence            9987 99999998653

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=97.71  E-value=8.7e-05  Score=73.58  Aligned_cols=92  Identities=14%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-----------HHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-----------KEI  201 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-----------~da  201 (311)
                      +..++++.+++.|++.|++-.-++...|   +   ...+.+.+.|+++++.+ ++||+..|||++.           +++
T Consensus       281 dp~~~A~~~~~~Ga~~l~~~dl~~~~~~---~---~~~~~~~~~i~~i~~~~-~ipi~vgGGIr~~~d~~~~~~~~~~~a  353 (555)
T 1jvn_A          281 KPVQLAQKYYQQGADEVTFLNITSFRDC---P---LKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVA  353 (555)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEEC---CC---C---GGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHH
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCccccc---c---CCCchHHHHHHHHHhhC-CCcEEEeCccccchhcccccchHHHHH
Confidence            5789999999999999988654431111   1   11123688999999988 7999999999998           559


Q ss_pred             HHHHhh-cCEEEEehhhhh-------------CCcchHHhHhhh
Q psy2386         202 DLHLNY-IDGVMLGREAYK-------------NPFLMSNFDLNY  231 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~-------------~P~i~~~~~~~~  231 (311)
                      .++++. ||.|.||++++.             +|.+++++.+.+
T Consensus       354 ~~~l~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  397 (555)
T 1jvn_A          354 SLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAY  397 (555)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHh
Confidence            999987 999999999987             479999987653

>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}

Probab=97.68  E-value=0.00025  Score=67.68  Aligned_cols=142  Identities=13%  Similarity=-0.005  Sum_probs=99.3

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcc-cCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAIL-MTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDF  137 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~L-l~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~  137 (311)
                      .+.|+.+.+.||..+-++...+..  .|  .|... -.+++...+.+++||+++  ++++.|...-+|+.    ++..++
T Consensus       161 ~~~a~~~~~~G~~~~K~~~~~~~~--~K--~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~----~~A~~~  232 (410)
T 3dip_A          161 GVLAESLVAEGYAAMKIWPFDDFA--SI--TPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGT----HAAARI  232 (410)
T ss_dssp             HHHHHHHHHTTCSEEEECTTHHHH--TT--CTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCH----HHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECCccCcc--cc--ccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCH----HHHHHH
Confidence            344555667899999997221111  01  12211 123566778899999987  47888877767764    357889


Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCC-CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRK-IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~-~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmig  214 (311)
                      ++.|++.|+++|--                . .++-|++..+++++.+ ++||.+.+.+.+++++.++++.  +|.|++=
T Consensus       233 ~~~L~~~~i~~iEq----------------P~~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k  295 (410)
T 3dip_A          233 CNALADYGVLWVED----------------PIAKMDNIPAVADLRRQT-RAPICGGENLAGTRRFHEMLCADAIDFVMLD  295 (410)
T ss_dssp             HHHGGGGTCSEEEC----------------CBSCTTCHHHHHHHHHHH-CCCEEECTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred             HHHHHhcCCCEEEC----------------CCCCcccHHHHHHHHhhC-CCCEEecCCcCCHHHHHHHHHcCCCCeEeec
Confidence            99999999998841                1 1234788899999988 7999999999999999999975  9999996


Q ss_pred             hhhhhCCcchHHh
Q psy2386         215 REAYKNPFLMSNF  227 (311)
Q Consensus       215 Ra~l~~P~i~~~~  227 (311)
                      -+-.+...=..++
T Consensus       296 ~~~~GGit~~~~i  308 (410)
T 3dip_A          296 LTWCGGLSEGRKI  308 (410)
T ss_dssp             TTTSSCHHHHHHH
T ss_pred             ccccCCHHHHHHH
Confidence            5554444333333

>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A

Probab=97.67  E-value=0.00039  Score=66.09  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHH
Q psy2386          57 PKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        57 ~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      |+++++.|+...+. ||..|-+..|                .+++.-.+.++++|+++ ++++.|...-+|+.    ++.
T Consensus       169 ~e~~~~~a~~~~~~~G~~~~K~KvG----------------~~~~~d~~~v~avR~~~~~~~l~vDaN~~w~~----~~A  228 (398)
T 4dye_A          169 PKAMAEHAVRVVEEGGFDAVKLKGT----------------TDCAGDVAILRAVREALPGVNLRVDPNAAWSV----PDS  228 (398)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECC----------------SCHHHHHHHHHHHHHHCTTSEEEEECTTCSCH----HHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEecC----------------CCHHHHHHHHHHHHHhCCCCeEEeeCCCCCCH----HHH
Confidence            68898888877777 9999999865                13455567788888876 56788877777764    356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVm  212 (311)
                      .++++.+++.|+.+|-               +. .  .|++..+++++.. ++||.+...+.+++++.++++.  +|.|+
T Consensus       229 ~~~~~~l~~~~i~~iE---------------qP-~--~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~d~v~  289 (398)
T 4dye_A          229 VRAGIALEELDLEYLE---------------DP-C--VGIEGMAQVKAKV-RIPLCTNMCVVRFEDFAPAMRLNAVDVIH  289 (398)
T ss_dssp             HHHHHHHGGGCCSEEE---------------CC-S--SHHHHHHHHHHHC-CSCEEESSSCCSGGGHHHHHHTTCCSEEE
T ss_pred             HHHHHHHhhcCCCEEc---------------CC-C--CCHHHHHHHHhhC-CCCEEeCCcCCCHHHHHHHHHhCCCCEEE
Confidence            8899999999999882               11 1  2888899999998 7999999999999999999975  99999


Q ss_pred             EehhhhhCCcchHHhH
Q psy2386         213 LGREAYKNPFLMSNFD  228 (311)
Q Consensus       213 igRa~l~~P~i~~~~~  228 (311)
                      +--+-.+...=..++.
T Consensus       290 ~k~~~~GGit~~~~ia  305 (398)
T 4dye_A          290 GDVYKWGGIAATKALA  305 (398)
T ss_dssp             ECHHHHTSHHHHHHHH
T ss_pred             eCccccCCHHHHHHHH
Confidence            9876666654444443

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=97.66  E-value=0.00052  Score=60.22  Aligned_cols=141  Identities=13%  Similarity=0.167  Sum_probs=97.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHH---HHhccccceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK---AMRDSVEIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~---~v~~~~~~pvsvKi  121 (311)
                      +.|+.+.|.-+||+.+.+...   +  +|.|-+|.....                +.+.+.++   .+++. +.-+.|-+
T Consensus        64 ~~~~dvhLmv~dp~~~i~~~~---~--Ad~itvH~ea~~----------------~~~~~~i~~~~~i~~~-G~k~gval  121 (227)
T 1tqx_A           64 SIFFDVHLMVEYPEKYVPLLK---T--SNQLTFHFEALN----------------EDTERCIQLAKEIRDN-NLWCGISI  121 (227)
T ss_dssp             SCEEEEEEESSCGGGGGGGCT---T--SSEEEEEGGGGT----------------TCHHHHHHHHHHHHTT-TCEEEEEE
T ss_pred             CCcEEEEEEEcCHHHHHHHHH---h--CCEEEEeecCCc----------------cCHHHHHHHHHHHHHc-CCeEEEEe
Confidence            689999999999997754332   2  799988854321                12345566   77764 66666655


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      ..+..        .+.++.+.+.| +|+|.+.+-..   |+.|.  .. .+..++.++++++..++++|.+-|||. ++.
T Consensus       122 np~tp--------~~~~~~~l~~g~~D~VlvmsV~p---Gf~gq--~f-~~~~l~ki~~lr~~~~~~~I~VdGGI~-~~t  186 (227)
T 1tqx_A          122 KPKTD--------VQKLVPILDTNLINTVLVMTVEP---GFGGQ--SF-MHDMMGKVSFLRKKYKNLNIQVDGGLN-IET  186 (227)
T ss_dssp             CTTSC--------GGGGHHHHTTTCCSEEEEESSCT---TCSSC--CC-CGGGHHHHHHHHHHCTTCEEEEESSCC-HHH
T ss_pred             CCCCc--------HHHHHHHhhcCCcCEEEEeeecc---CCCCc--cc-chHHHHHHHHHHHhccCCeEEEECCCC-HHH
Confidence            43321        34556667776 99996554432   33222  11 234678899999877578999999998 789


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCc
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.++.+. ||.+.+||++++.+.
T Consensus       187 i~~~~~aGAd~~V~GsaIf~~~d  209 (227)
T 1tqx_A          187 TEISASHGANIIVAGTSIFNAED  209 (227)
T ss_dssp             HHHHHHHTCCEEEESHHHHTCSS
T ss_pred             HHHHHHcCCCEEEEeHHHhCCCC
Confidence            9998876 999999999987655

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=97.66  E-value=0.0013  Score=59.59  Aligned_cols=147  Identities=8%  Similarity=0.059  Sum_probs=100.4

Q ss_pred             CCCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEE
Q psy2386          44 EEHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITV  119 (311)
Q Consensus        44 ~~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsv  119 (311)
                      .+.|+++=+   +| +|+...+.++.+.++|+++|.|-=+.. +|.+....| . +-+.+...+-|++++++- +.++.|
T Consensus        81 ~~~PviaD~d~Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~-pKrcgh~~g-k-l~~~~e~~~~I~aa~~a~~~~~~~i  156 (287)
T 3b8i_A           81 ARLPVIADADHGYG-NALNVMRTVVELERAGIAALTIEDTLL-PAQFGRKST-D-LICVEEGVGKIRAALEARVDPALTI  156 (287)
T ss_dssp             CSSCEEEECTTCSS-SHHHHHHHHHHHHHHTCSEEEEECBCC-SCCTTTCTT-C-BCCHHHHHHHHHHHHHHCCSTTSEE
T ss_pred             CCCCEEEECCCCCC-CHHHHHHHHHHHHHhCCeEEEEcCCCC-ccccCCCCC-C-ccCHHHHHHHHHHHHHcCCCCCcEE
Confidence            456887766   36 899999999988899999999986643 443332233 4 566666666677776653 445566


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-c---CC
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-G---GI  195 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-G---gI  195 (311)
                      --|..- .....++.++-++.++++|+|.|.+++-.                 +.+.++++.+.+ ++|++.. |   ..
T Consensus       157 ~aRtda-a~~gl~~ai~Ra~ay~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~ii~~~g~~~~  217 (287)
T 3b8i_A          157 IARTNA-ELIDVDAVIQRTLAYQEAGADGICLVGVR-----------------DFAHLEAIAEHL-HIPLMLVTYGNPQL  217 (287)
T ss_dssp             EEEEET-TTSCHHHHHHHHHHHHHTTCSEEEEECCC-----------------SHHHHHHHHTTC-CSCEEEECTTCGGG
T ss_pred             EEechh-hhcCHHHHHHHHHHHHHcCCCEEEecCCC-----------------CHHHHHHHHHhC-CCCEEEeCCCCCCC
Confidence            666543 33335678899999999999999998752                 568899999998 6998742 3   34


Q ss_pred             CCHHHHHHHHhhcCEEEEeh
Q psy2386         196 KTKKEIDLHLNYIDGVMLGR  215 (311)
Q Consensus       196 ~s~~da~~~l~~adgVmigR  215 (311)
                      .|.++..++  ++..|..|-
T Consensus       218 ~~~~eL~~l--Gv~~v~~~~  235 (287)
T 3b8i_A          218 RDDARLARL--GVRVVVNGH  235 (287)
T ss_dssp             CCHHHHHHT--TEEEEECCC
T ss_pred             CCHHHHHHc--CCcEEEECh
Confidence            555544433  266666553

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=97.64  E-value=0.00099  Score=61.23  Aligned_cols=151  Identities=13%  Similarity=0.040  Sum_probs=101.0

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVK  120 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvK  120 (311)
                      +.|+++=+   +| +|+...+.++.+.++|+.+|.|-=+.. ++++. +.|+.-+-..+...+-|++++++. +.++.|-
T Consensus       101 ~~PviaD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~-~k~cg-H~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~  177 (318)
T 1zlp_A          101 NLCVVVDGDTGGG-GPLNVQRFIRELISAGAKGVFLEDQVW-PKKCG-HMRGKAVVPAEEHALKIAAAREAIGDSDFFLV  177 (318)
T ss_dssp             SSEEEEECTTCSS-SHHHHHHHHHHHHHTTCCEEEEECBCS-SCCCS-SSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEE
T ss_pred             CCCEEEeCCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCC-Ccccc-CCCCCccCCHHHHHHHHHHHHHhcccCCcEEE
Confidence            57888776   36 899999999988899999999986643 33332 233333344444444555555543 4556666


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---c---C
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---G---G  194 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---G---g  194 (311)
                      -|..-......++.++-++.++++|+|.|.+++..                 +.+.++++.+.+ ++|+.+|   |   .
T Consensus       178 ARtda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~-----------------~~e~~~~i~~~l-~~P~lan~~~~g~~~  239 (318)
T 1zlp_A          178 ARTDARAPHGLEEGIRRANLYKEAGADATFVEAPA-----------------NVDELKEVSAKT-KGLRIANMIEGGKTP  239 (318)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCC-----------------SHHHHHHHHHHS-CSEEEEEECTTSSSC
T ss_pred             EeeHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCCC-----------------CHHHHHHHHHhc-CCCEEEEeccCCCCC
Confidence            67521111123467888999999999999998753                 568899999999 7999766   3   3


Q ss_pred             CCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         195 IKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       195 I~s~~da~~~l~~adgVmigRa~l  218 (311)
                      ..|.++..++  .+..|..|-.++
T Consensus       240 ~~~~~eL~~l--Gv~~v~~~~~~~  261 (318)
T 1zlp_A          240 LHTPEEFKEM--GFHLIAHSLTAV  261 (318)
T ss_dssp             CCCHHHHHHH--TCCEEEECSHHH
T ss_pred             CCCHHHHHHc--CCeEEEEchHHH
Confidence            4554444333  388898886665

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=97.63  E-value=0.00019  Score=63.64  Aligned_cols=82  Identities=12%  Similarity=0.045  Sum_probs=59.7

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +....+.|+|+|.+.+.....   + ++. . ++..++.++++++.. .++||++-||| +++++.++++. +|||.+|+
T Consensus       148 a~~A~~~GaDyI~vgpvf~T~---t-K~~-~-~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gvav~s  220 (243)
T 3o63_A          148 VAAAAAGDADYFCVGPCWPTP---T-KPG-R-AAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRIVVVR  220 (243)
T ss_dssp             HHHHHHSSCSEEEECCSSCCC---C--------CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCEEESH
T ss_pred             HHHHhhCCCCEEEEcCccCCC---C-CCC-c-chhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEEEEeH
Confidence            556677999999986543210   0 111 1 346899999998763 27999999999 89999999987 99999999


Q ss_pred             hhhhCCcchHH
Q psy2386         216 EAYKNPFLMSN  226 (311)
Q Consensus       216 a~l~~P~i~~~  226 (311)
                      +++..+.....
T Consensus       221 ai~~a~dp~~a  231 (243)
T 3o63_A          221 AITSADDPRAA  231 (243)
T ss_dssp             HHHTCSSHHHH
T ss_pred             HHhCCCCHHHH
Confidence            99876664433

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=97.63  E-value=5.3e-05  Score=67.96  Aligned_cols=80  Identities=8%  Similarity=-0.022  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-.-++               .+.+.|+++++.+ .+||...|||++. ++.+++ . ||-|.
T Consensus        40 p~~~A~~~~~~Ga~~l~vvDL~~---------------~n~~~i~~i~~~~-~~pv~vgGGir~~-~~~~~l-~Ga~~Vi  101 (260)
T 2agk_A           40 SSYYAKLYKDRDVQGCHVIKLGP---------------NNDDAAREALQES-PQFLQVGGGINDT-NCLEWL-KWASKVI  101 (260)
T ss_dssp             HHHHHHHHHHTTCTTCEEEEESS---------------SCHHHHHHHHHHS-TTTSEEESSCCTT-THHHHT-TTCSCEE
T ss_pred             HHHHHHHHHHcCCCEEEEEeCCC---------------CCHHHHHHHHhcC-CceEEEeCCCCHH-HHHHHh-cCCCEEE
Confidence            57899999999999998743221               2678899999998 6999999999987 999999 7 99999


Q ss_pred             EehhhhhC-----CcchHHhHhhh
Q psy2386         213 LGREAYKN-----PFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~-----P~i~~~~~~~~  231 (311)
                      +|++++.|     |.++.++.+.+
T Consensus       102 igs~a~~~~g~~~p~~~~~~~~~~  125 (260)
T 2agk_A          102 VTSWLFTKEGHFQLKRLERLTELC  125 (260)
T ss_dssp             ECGGGBCTTCCBCHHHHHHHHHHH
T ss_pred             ECcHHHhhcCCCCHHHHHHHHHHh
Confidence            99999999     99999887654

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=97.60  E-value=0.0022  Score=57.78  Aligned_cols=145  Identities=11%  Similarity=0.071  Sum_probs=101.3

Q ss_pred             CCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEE
Q psy2386          46 HPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITV  119 (311)
Q Consensus        46 ~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsv  119 (311)
                      .|+++=+   +|.+|+...+.++.+.++|+.+|.|-=+...       .|.. +-+.+...+-|++++++.   ++|+.|
T Consensus        77 ~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~-------~~k~-l~~~~e~~~~I~aa~~a~~~~g~~~~i  148 (275)
T 2ze3_A           77 IPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGL-------TPTE-LYDLDSQLRRIEAARAAIDASGVPVFL  148 (275)
T ss_dssp             SCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSS-------SSSC-BCCHHHHHHHHHHHHHHHHHHTSCCEE
T ss_pred             CCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCC-------CCCc-cCCHHHHHHHHHHHHHhHhhcCCCeEE
Confidence            6887766   3568999999999888999999999765431       1223 446666666677776653   688888


Q ss_pred             EEeccCCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         120 KHRIGIDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       120 KiR~g~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      --|..-.-.       +..++.++-++.++++|+|.|.+++..                 +.+.++++.+.+ ++|+-.+
T Consensus       149 ~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~n~~  210 (275)
T 2ze3_A          149 NARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFVPLAL-----------------QSQDIRALADAL-RVPLNVM  210 (275)
T ss_dssp             EEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCC-----------------CHHHHHHHHHHC-SSCEEEE
T ss_pred             EEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEECCCC-----------------CHHHHHHHHHhc-CCCEEEe
Confidence            888632110       135678888999999999999998753                 568899999998 6998766


Q ss_pred             c--CCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         193 G--GIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       193 G--gI~s~~da~~~l~~adgVmigRa~l  218 (311)
                      +  +..|.++..++  ++..|..|-.++
T Consensus       211 ~~~~~~~~~eL~~l--Gv~~v~~~~~~~  236 (275)
T 2ze3_A          211 AFPGSPVPRALLDA--GAARVSFGQSLM  236 (275)
T ss_dssp             CCTTSCCHHHHHHT--TCSEEECTTHHH
T ss_pred             cCCCCCCHHHHHHc--CCcEEEEChHHH
Confidence            4  44554333222  277777775543

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=97.59  E-value=0.0017  Score=56.57  Aligned_cols=134  Identities=13%  Similarity=0.132  Sum_probs=80.6

Q ss_pred             HHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386          65 KIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS  143 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~  143 (311)
                      ..+.++|+|+|-|...- ..              .++.+.+.++..++. ++.+.+=+..  .        .+ .+.+.+
T Consensus        76 ~~~~~~Gad~Vll~~ser~l--------------~~~e~~~~~~~a~~~-Gl~~iv~v~~--~--------~e-~~~~~~  129 (219)
T 2h6r_A           76 EAIKDCGCKGTLINHSEKRM--------------LLADIEAVINKCKNL-GLETIVCTNN--I--------NT-SKAVAA  129 (219)
T ss_dssp             HHHHHHTCCEEEESBTTBCC--------------BHHHHHHHHHHHHHH-TCEEEEEESS--S--------HH-HHHHTT
T ss_pred             HHHHHcCCCEEEECCccccC--------------CHHHHHHHHHHHHHC-CCeEEEEeCC--c--------hH-HHHHHh
Confidence            56678899999994220 01              123356777766654 6555554331  1        11 345566


Q ss_pred             cCCCEEEEecCccccccCCCCc-CCCCCcCcHH-HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         144 AGCRTFIVHARNAFLKKLNPKQ-NRKIPILKYN-FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       144 ~G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~~-~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      .|.+.|.+++|..  -| +|.. ....+ .+.+ ....+++...++||++-|||++++++..+.+. +|||.||++++.-
T Consensus       130 ~~~~~i~~~~~~~--iG-tG~~~~t~~~-~~~~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~  205 (219)
T 2h6r_A          130 LSPDCIAVEPPEL--IG-TGIPVSKANP-EVVEGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA  205 (219)
T ss_dssp             TCCSEEEECCCC------------------CSHHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred             CCCCEEEEEeccc--cc-cCCCCccCCH-HHHHHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence            7899999998863  23 3310 00111 1133 33344443326999999999999999998877 9999999999987


Q ss_pred             CcchHHhH
Q psy2386         221 PFLMSNFD  228 (311)
Q Consensus       221 P~i~~~~~  228 (311)
                      +.....++
T Consensus       206 ~d~~~~~~  213 (219)
T 2h6r_A          206 KNVEEAIR  213 (219)
T ss_dssp             SSHHHHHH
T ss_pred             ccHHHHHH
Confidence            76544443

>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}

Probab=97.59  E-value=0.0011  Score=62.24  Aligned_cols=140  Identities=12%  Similarity=0.079  Sum_probs=103.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc---ceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE---IDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~---~pvsvKi  121 (311)
                      ..|+-..+++.+|+.+.+.++.+.+.||..+-+..|.               .+++.-.+.++++++.++   +.+.+..
T Consensus       151 ~vp~~~~i~~~~~e~~~~~a~~~~~~G~~~~K~Kvg~---------------~~~~~d~~~v~avr~~~g~~~~~l~vDa  215 (377)
T 2pge_A          151 RIPVNGLIWMGEAAFMQEQIEAKLAEGYGCLKLKIGA---------------IDFDKECALLAGIRESFSPQQLEIRVDA  215 (377)
T ss_dssp             CEEBCEEECCCCHHHHHHHHHHHHHTTCSEEEEEC------------------CHHHHHHHHHHHHHHSCTTTCEEEEEC
T ss_pred             eEEEeEEecCCCHHHHHHHHHHHHHHhhhhheeecCC---------------CChHHHHHHHHHHHHHcCCCCceEEEEC
Confidence            3455566777899999888888878899999987653               246666778888888764   5666766


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH-
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d-  200 (311)
                      .-+|+..    +..++++.+++.++.+|-        +        ..++.||+..+++++.. .+||.+.-.+.|..+ 
T Consensus       216 N~~~~~~----~a~~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~  274 (377)
T 2pge_A          216 NGAFSPA----NAPQRLKRLSQFHLHSIE--------Q--------PIRQHQWSEMAALCANS-PLAIALDEELIGLGAE  274 (377)
T ss_dssp             TTBBCTT----THHHHHHHHHTTCCSEEE--------C--------CBCSSCHHHHHHHHHHC-SSCEEESGGGTTCCTH
T ss_pred             CCCCCHH----HHHHHHHHHhcCCCcEEE--------c--------cCCcccHHHHHHHHhhC-CCcEEECCccCCcchH
Confidence            6677654    357899999999888771        1        11235899999999988 799999999998888 


Q ss_pred             -HHHHHhh--cCEEEEehhhhhC
Q psy2386         201 -IDLHLNY--IDGVMLGREAYKN  220 (311)
Q Consensus       201 -a~~~l~~--adgVmigRa~l~~  220 (311)
                       +.++++.  +|.|++==.-.+.
T Consensus       275 ~~~~~i~~~a~d~i~ik~~~~GG  297 (377)
T 2pge_A          275 QRSAMLDAIRPQYIILKPSLLGG  297 (377)
T ss_dssp             HHHHHHHHHCCSEEEECHHHHTS
T ss_pred             HHHHHHHhCCCCEEEECchhcCC
Confidence             6688864  9999885444333

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=97.58  E-value=0.00032  Score=61.54  Aligned_cols=150  Identities=11%  Similarity=0.092  Sum_probs=93.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----c------ccCcccCcccCChHHHHHHHHHHhc--
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----V------QNGFFGAILMTKPLLVSDCIKAMRD--  111 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v------~~~~~G~~Ll~~~~~~~~iv~~v~~--  111 (311)
                      +.|++.=+-+.+++++.+.++.+.+.|++.|++-+--|...     .      ..-++|. ++ +.+.+...+++=.+  
T Consensus        25 ~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagt-vl-~~d~~~~A~~aGAd~v  102 (225)
T 1mxs_A           25 KARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGT-VL-DRSMFAAVEAAGAQFV  102 (225)
T ss_dssp             HHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEEC-CC-SHHHHHHHHHHTCSSE
T ss_pred             HCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCe-Ee-eHHHHHHHHHCCCCEE
Confidence            35778878888999888888888889999999975433211     0      0113343 22 33443333322111  


Q ss_pred             --------------cccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386         112 --------------SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus       112 --------------~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                                    ..++|+..    |..   +   ..| +..+.+.|+|+|.+|+-.. .             .-.+++
T Consensus       103 ~~p~~d~~v~~~~~~~g~~~i~----G~~---t---~~e-~~~A~~~Gad~vk~FPa~~-~-------------~G~~~l  157 (225)
T 1mxs_A          103 VTPGITEDILEAGVDSEIPLLP----GIS---T---PSE-IMMGYALGYRRFKLFPAEI-S-------------GGVAAI  157 (225)
T ss_dssp             ECSSCCHHHHHHHHHCSSCEEC----EEC---S---HHH-HHHHHTTTCCEEEETTHHH-H-------------THHHHH
T ss_pred             EeCCCCHHHHHHHHHhCCCEEE----eeC---C---HHH-HHHHHHCCCCEEEEccCcc-c-------------cCHHHH
Confidence                          11222221    211   1   122 3455678888888865210 0             025788


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHh-h-cCEEEEehhhhhCCcc
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLN-Y-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~-~-adgVmigRa~l~~P~i  223 (311)
                      ++++..+|++|+++.||| +++.+.++++ . +++|. |++++..+++
T Consensus       158 k~i~~~~~~ipvvaiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~~~i  203 (225)
T 1mxs_A          158 KAFGGPFGDIRFCPTGGV-NPANVRNYMALPNVMCVG-TTWMLDSSWI  203 (225)
T ss_dssp             HHHHTTTTTCEEEEBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCHHHH
T ss_pred             HHHHhhCCCCeEEEECCC-CHHHHHHHHhccCCEEEE-EchhcCchhh
Confidence            999988878999999999 5789999998 5 99999 9988765443

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.56  E-value=0.0005  Score=66.92  Aligned_cols=125  Identities=23%  Similarity=0.269  Sum_probs=80.1

Q ss_pred             HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          61 AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        61 ~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .+.+..+.+.|+|.+-+.-           .|+.    ...+.+.++.+++..++||.+|-= +  .       .+-++.
T Consensus       230 ~~~a~~l~~~gvd~lvvdt-----------a~G~----~~~~L~~I~~l~~~~~vpvi~k~v-~--~-------~~~a~~  284 (486)
T 2cu0_A          230 IKRAIELDKAGVDVIVVDT-----------AHAH----NLKAIKSMKEMRQKVDADFIVGNI-A--N-------PKAVDD  284 (486)
T ss_dssp             HHHHHHHHHTTCSEEEEEC-----------SCCC----CHHHHHHHHHHHHTCCSEEEEEEE-C--C-------HHHHTT
T ss_pred             HHHHHHHHHhcCCceEEEe-----------cCCc----EeehhhHHHHHHHHhCCccccCCc-C--C-------HHHHHH
Confidence            3456677788988875541           1111    123345567777777899988732 2  1       233444


Q ss_pred             HHHcCCCEEEEecCcc--c-----cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         141 VSSAGCRTFIVHARNA--F-----LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~--~-----~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      +.  |++.|.+ |.-.  +     ..|...+ +    ......+.++++.+ ++|||+.|||.+..|+.+++.. ||+||
T Consensus       285 l~--G~d~v~v-g~g~g~~~~~r~~~~~g~~-~----~~~l~~~~~~~~~~-~vpVia~GGi~~~~di~kalalGA~~v~  355 (486)
T 2cu0_A          285 LT--FADAVKV-GIGPGSICTTRIVAGVGVP-Q----ITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIAAGADAVM  355 (486)
T ss_dssp             CT--TSSEEEE-CSSCSTTBCHHHHTCCCCC-H----HHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             hh--CCCeEEE-eeeeccceeeeEEeecCcc-h----HHHHHHHHHHHHHc-CCcEEecCCCCCHHHHHHHHHcCCCcee
Confidence            55  9999998 3211  0     1111100 0    01234556666666 7999999999999999999986 99999


Q ss_pred             Eehhhhh
Q psy2386         213 LGREAYK  219 (311)
Q Consensus       213 igRa~l~  219 (311)
                      +|+.++.
T Consensus       356 ~g~~~~~  362 (486)
T 2cu0_A          356 LGNLLAG  362 (486)
T ss_dssp             ESTTTTT
T ss_pred             eChhhhc
Confidence            9999875

>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1

Probab=97.50  E-value=0.00062  Score=64.44  Aligned_cols=136  Identities=11%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .|+-..++ +.+++++.+.++.+.+.||+.+-+..| |             -.+    .+.++++|+++ ++.+.|...-
T Consensus       150 v~~~~~~g~~~~~e~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d----~~~v~avr~a~~~~~l~vDaN~  211 (393)
T 1wuf_A          150 IKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIA-P-------------NKD----IQFVEAVRKSFPKLSLMADANS  211 (393)
T ss_dssp             EEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECB-T-------------TBS----HHHHHHHHTTCTTSEEEEECTT
T ss_pred             ceeeEEeCCCCCHHHHHHHHHHHHHHhhHhheeccC-h-------------HHH----HHHHHHHHHHcCCCEEEEECCC
Confidence            34444554 346999988888777789999999754 1             122    34567777776 4455555555


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..    +. ++++.+++.++.+|-        +        ..++-|++..+++++.. ++||.+.-.+.+.+++.+
T Consensus       212 ~~~~~----~a-~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~  269 (393)
T 1wuf_A          212 AYNRE----DF-LLLKELDQYDLEMIE--------Q--------PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVEQ  269 (393)
T ss_dssp             CCCGG----GH-HHHHTTGGGTCSEEE--------C--------CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHHH
T ss_pred             CCCHH----HH-HHHHHHHhCCCeEEE--------C--------CCCCcCHHHHHHHHHhC-CCCEEECCCcCCHHHHHH
Confidence            66542    45 788999999988883        1        11235788899999887 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCC
Q psy2386         204 HLNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P  221 (311)
                      +++.  +|.|++==.-.+..
T Consensus       270 ~i~~~a~d~v~ik~~~~GGi  289 (393)
T 1wuf_A          270 AHSIGSCRAINLKLARVGGM  289 (393)
T ss_dssp             HHHHTCCSEEEECTGGGTSH
T ss_pred             HHHhCCCCEEEeChhhhCCH
Confidence            9975  89999854443333

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=97.48  E-value=0.0033  Score=57.24  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=96.2

Q ss_pred             CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCccc--CcccCChHHHHHHHHHHhcc-cccee
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFG--AILMTKPLLVSDCIKAMRDS-VEIDI  117 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G--~~Ll~~~~~~~~iv~~v~~~-~~~pv  117 (311)
                      .+.|+++=+=   | ++....+.++.+.++|+.+|.|-=+.. +|++. +.|  +.-+-..+...+-|++++++ .+.++
T Consensus        78 ~~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iED~~~-~k~cg-H~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~  154 (295)
T 1s2w_A           78 SDVPILLDADTGYG-NFNNARRLVRKLEDRGVAGACLEDKLF-PKTNS-LHDGRAQPLADIEEFALKIKACKDSQTDPDF  154 (295)
T ss_dssp             CSSCEEEECCSSCS-SHHHHHHHHHHHHHTTCCEEEEECBCC----------CTTCCBCCHHHHHHHHHHHHHHCSSTTC
T ss_pred             CCCCEEecCCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCC-Ccccc-ccCCCCCcccCHHHHHHHHHHHHHhcccCCc
Confidence            3578887763   5 577888888888899999999986643 33332 223  12233444444444455444 34556


Q ss_pred             EEEEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC--CeEEEecC
Q psy2386         118 TVKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE--LEIIINGG  194 (311)
Q Consensus       118 svKiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~--ipvi~nGg  194 (311)
                      .|--|..-. .....++.++-++.++++|+|.|.+++..                .+.+.++++.+.+ +  +|+++|-+
T Consensus       155 ~i~aRtda~~a~~g~~~ai~Ra~ay~eAGAd~i~~e~~~----------------~~~~~~~~i~~~~-~~~~P~i~~~~  217 (295)
T 1s2w_A          155 CIVARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKK----------------ADPSDIEAFMKAW-NNQGPVVIVPT  217 (295)
T ss_dssp             EEEEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCS----------------SSSHHHHHHHHHH-TTCSCEEECCS
T ss_pred             EEEEeehHHhccccHHHHHHHHHHHHHcCCCEEEEcCCC----------------CCHHHHHHHHHHc-CCCCCEEEeCC
Confidence            666675322 12234578899999999999999998642                1457788888887 5  99999843


Q ss_pred             ---CCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         195 ---IKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       195 ---I~s~~da~~~l~~-adgVmigRa~l  218 (311)
                         -.+   ..++-+. +..|.+|-.++
T Consensus       218 ~~~~~~---~~eL~~lGv~~v~~~~~~~  242 (295)
T 1s2w_A          218 KYYKTP---TDHFRDMGVSMVIWANHNL  242 (295)
T ss_dssp             TTTTSC---HHHHHHHTCCEEEECSHHH
T ss_pred             CCCCCC---HHHHHHcCCcEEEEChHHH
Confidence               344   3344333 88899886654

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=97.48  E-value=0.0013  Score=60.24  Aligned_cols=152  Identities=11%  Similarity=0.065  Sum_probs=96.3

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDIT  118 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvs  118 (311)
                      ..|+++=+   +| +|+...+.++.+.++|+.+|.|-=... +|.+..-.|-.| -..+...+-+++.+++   .+.++.
T Consensus        88 ~~PviaD~d~Gyg-~~~~v~~~v~~l~~aGaagv~iEDq~~-~k~cgh~~gk~l-~~~~e~~~rI~Aa~~A~~~~~~d~~  164 (307)
T 3lye_A           88 GPPLIADMDTGYG-GPIMVARTVEHYIRSGVAGAHLEDQIL-TKRCGHLSGKKV-VSRDEYLVRIRAAVATKRRLRSDFV  164 (307)
T ss_dssp             SCCEEEECTTCSS-SHHHHHHHHHHHHHTTCCEEEECCBCC-CC--------CB-CCHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             CCcEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEcCCCC-CcccCCCCCCee-cCHHHHHHHHHHHHHHHHhcCCCeE
Confidence            57888766   34 588899999999999999999975542 232221123334 3444433334444433   256777


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC-
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG-  194 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg-  194 (311)
                      |--|..-......++.++-++.+.++|+|.|-+++.+                 +.+.++++.+.++.+||.+|   || 
T Consensus       165 I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~-----------------~~~~~~~i~~~~~~~Pv~~n~~~~g~  227 (307)
T 3lye_A          165 LIARTDALQSLGYEECIERLRAARDEGADVGLLEGFR-----------------SKEQAAAAVAALAPWPLLLNSVENGH  227 (307)
T ss_dssp             EEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCS-----------------CHHHHHHHHHHHTTSCBEEEEETTSS
T ss_pred             EEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCCC-----------------CHHHHHHHHHHccCCceeEEeecCCC
Confidence            7778632111234567888999999999999998764                 45778899888744888776   33 


Q ss_pred             --CCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         195 --IKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       195 --I~s~~da~~~l~~adgVmigRa~l  218 (311)
                        ..|.++..++  .+..|+.+-.++
T Consensus       228 ~p~~t~~eL~~l--Gv~~v~~~~~~~  251 (307)
T 3lye_A          228 SPLITVEEAKAM--GFRIMIFSFATL  251 (307)
T ss_dssp             SCCCCHHHHHHH--TCSEEEEETTTH
T ss_pred             CCCCCHHHHHHc--CCeEEEEChHHH
Confidence              3455444443  388887776554

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=97.46  E-value=0.00093  Score=58.99  Aligned_cols=147  Identities=14%  Similarity=0.149  Sum_probs=97.2

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEE--EeccCC--CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEI--NLNCGC--PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~I--diN~gC--P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.++|...|...+.++.+.+.+.|+|.+  |+==|.  |  +.   .+|          ..+++++++.++.  .|++=+
T Consensus        16 i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvp--n~---t~G----------~~~v~~lr~~~~~--DvhLMv   78 (237)
T 3cu2_A           16 LSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSS--LF---TVG----------AIGIKYFPTHCFK--DVHLMV   78 (237)
T ss_dssp             EEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSS--CB---CBC----------THHHHTSCTTSEE--EEEEEC
T ss_pred             EEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCcccc--ch---hhh----------HHHHHHHhhhCCC--CeEEEE
Confidence            7899999999999999999999999974  552232  3  11   122          2567778877643  555443


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------c--cc---------c------CCCC---cC---------
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------F--LK---------K------LNPK---QN---------  166 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------~--~~---------G------~~g~---~~---------  166 (311)
                        ++      ...+++.+.++|+|.+|+|.-..        .  ..         |      ++|.   +.         
T Consensus        79 --~~------p~~~i~~~~~aGAd~itvH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D  150 (237)
T 3cu2_A           79 --RN------QLEVAKAVVANGANLVTLQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQID  150 (237)
T ss_dssp             --SC------HHHHHHHHHHTTCSEEEEETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCS
T ss_pred             --EC------HHHHHHHHHHcCCCEEEEecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCc
Confidence              22      24678888999999999984211        0  01         1      0110   00         


Q ss_pred             -------------CCCCcCcHHHHHHHHHhCC----CCeEEEecCCCCHHHHHHHHh--h-cCEEEEehhhhhC
Q psy2386         167 -------------RKIPILKYNFVYNLKKDFP----ELEIIINGGIKTKKEIDLHLN--Y-IDGVMLGREAYKN  220 (311)
Q Consensus       167 -------------~~~~~~~~~~i~~i~~~~~----~ipvi~nGgI~s~~da~~~l~--~-adgVmigRa~l~~  220 (311)
                                   ....+...+.++++++...    ++||.+-|||+ .+.+.++.+  . ||++.+|++++..
T Consensus       151 ~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~~  223 (237)
T 3cu2_A          151 VIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFSG  223 (237)
T ss_dssp             EEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGSS
T ss_pred             eeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhCC
Confidence                         0001112456677776542    48999999998 789999998  6 9999999999874

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=97.46  E-value=0.0022  Score=56.12  Aligned_cols=132  Identities=11%  Similarity=0.010  Sum_probs=81.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE--EeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK--HRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK--iR~g~~~~~~~~~  133 (311)
                      +.+.-..-++. .+.|+|.||+-+          .+|..+-.+.+.+.+=+.++++.++- ..+|  +-.+.-.   .++
T Consensus        65 ~~~~k~~E~~~-i~~GAdEID~Vi----------nig~~~~g~~~~v~~ei~~v~~a~~~-~~lKvIlEt~~Lt---~ee  129 (226)
T 1vcv_A           65 PTASRIALVSR-LAEVADEIDVVA----------PIGLVKSRRWAEVRRDLISVVGAAGG-RVVKVITEEPYLR---DEE  129 (226)
T ss_dssp             CHHHHHHHHHH-HTTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTT-SEEEEECCGGGCC---HHH
T ss_pred             chHHHHHHHHH-HHCCCCEEEEec----------chhhhcCCCHHHHHHHHHHHHHHHcC-CCceEEEeccCCC---HHH
Confidence            33433334445 678999999852          14444446778888888888887742 2455  3333222   235


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCC----CcCCCCCcCcHHHHHHHHHh---C-CCCeEEEecCCCCHHHHHHHH
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNP----KQNRKIPILKYNFVYNLKKD---F-PELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g----~~~~~~~~~~~~~i~~i~~~---~-~~ipvi~nGgI~s~~da~~~l  205 (311)
                      ....++...++|+|+|--.      .||++    .+....+.+..+.++-+++.   + ++++|-+.|||+|.+|+.+++
T Consensus       130 i~~a~~ia~eaGADfVKTS------TGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i  203 (226)
T 1vcv_A          130 RYTLYDIIAEAGAHFIKSS------TGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIV  203 (226)
T ss_dssp             HHHHHHHHHHHTCSEEECC------CSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEeC------CCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHH
Confidence            6778888899999999543      23220    00000122444444444433   4 359999999999999999999


Q ss_pred             hhc
Q psy2386         206 NYI  208 (311)
Q Consensus       206 ~~a  208 (311)
                      +.+
T Consensus       204 ~a~  206 (226)
T 1vcv_A          204 DAI  206 (226)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=97.43  E-value=0.00072  Score=75.61  Aligned_cols=159  Identities=13%  Similarity=0.099  Sum_probs=99.8

Q ss_pred             CCCCCeEEEecCCCHHHH---HHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          43 AEEHPIAFQVGDNEPKKL---AKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~---~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      +.+.|+.+.+.=.+|..+   .+..+.+.+.|+..  |.+..|-|..               +.+.++++.+    ++++
T Consensus       642 ~~~~~~gvN~~~~~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p~~---------------~~~~~~i~~l----G~~v  702 (2051)
T 2uv8_G          642 EKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPSL---------------EVASEYIETL----GLKY  702 (2051)
T ss_dssp             CTTCCEEEEEETTCTTHHHHHHHHHHHHHHTTCSEEEEEEESSCCCH---------------HHHHHHHHHS----CCSC
T ss_pred             CCCCceEEEEeecChhhhhhhHHHHHHHHHcCCCcceEEecCCCCch---------------hhHHHHHHHc----CCEE
Confidence            446788888776555321   24555666777665  7777666642               3344444443    6665


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE---EEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF---IVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i---tvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      ....- +     .. ..+..+...+++|+|++   .+.|..  -+|..|.+..  ...-+..+.++++.+ +||||+.||
T Consensus       703 i~~~~-~-----~~-~a~~~~~~~~~~g~d~~ii~~~~G~e--aGGH~g~~d~--~~~~l~l~~~v~~~~-~ipviaaGG  770 (2051)
T 2uv8_G          703 LGLKP-G-----SI-DAISQVINIAKAHPNFPIALQWTGGR--GGGHHSFEDA--HTPMLQMYSKIRRHP-NIMLIFGSG  770 (2051)
T ss_dssp             EEECC-C-----SH-HHHHHHHHHHHHSTTSCEEEEECCSS--CSEECCSCCS--SHHHHHHHHHHTTCT-TBCCEEESS
T ss_pred             EEecC-c-----hH-HHHHHHHHHHHhCCCceeEEEEEccC--cCCCCCcccc--cccHHHHHHHHHhcC-CceEEEeCC
Confidence            43221 1     11 34566788889999994   444554  2444332111  112245678899887 899999999


Q ss_pred             CCCHHHHHHHH-----------hh-cCEEEEehhhhhCCc--chHHhHhhhc
Q psy2386         195 IKTKKEIDLHL-----------NY-IDGVMLGREAYKNPF--LMSNFDLNYY  232 (311)
Q Consensus       195 I~s~~da~~~l-----------~~-adgVmigRa~l~~P~--i~~~~~~~~~  232 (311)
                      |.+.+++..+|           .. ||||++|+.++.-..  .-..+++.+.
T Consensus       771 i~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~K~~iv  822 (2051)
T 2uv8_G          771 FGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKKCIA  822 (2051)
T ss_dssp             CCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHHHHHHH
Confidence            99999999999           34 999999999876543  3334454443

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=97.43  E-value=0.0059  Score=52.41  Aligned_cols=134  Identities=13%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             CCeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          46 HPIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      .++=+-++  +++|+.+   ++.+.++|+|.|-+|....                ++    +++.+++..  -|++...+
T Consensus        54 v~~D~kl~DI~~t~~~~---v~~~~~~Gad~vtvh~~~g----------------~~----~i~~~~~~~--gv~vl~~t  108 (208)
T 2czd_A           54 IIADLKLADIPNTNRLI---ARKVFGAGADYVIVHTFVG----------------RD----SVMAVKELG--EIIMVVEM  108 (208)
T ss_dssp             EEEEEEECSCHHHHHHH---HHHHHHTTCSEEEEESTTC----------------HH----HHHHHHTTS--EEEEECCC
T ss_pred             EEEEeeeCchHHHHHHH---HHHHHhcCCCEEEEeccCC----------------HH----HHHHHHHhC--CcEEEEec
Confidence            34456666  6666554   4555689999999995432                11    245555543  34444333


Q ss_pred             cCCCCCc--HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HH
Q psy2386         124 GIDDINS--YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KE  200 (311)
Q Consensus       124 g~~~~~~--~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~d  200 (311)
                      ....-.+  .+....++....+.|++.+.+.+..                  .+.++++++..+.-+++..|||+.. .+
T Consensus       109 ~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~------------------~~~i~~lr~~~~~~~~iv~gGI~~~g~~  170 (208)
T 2czd_A          109 SHPGALEFINPLTDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKILAPGIGAQGGK  170 (208)
T ss_dssp             CSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEEEECCCCSSTTH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhCCCCeEEEECCCCCCCCC
Confidence            2111000  1234566777889999998665332                  2456777777643467799999863 36


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCc
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.++++. +|++.+||+++..+.
T Consensus       171 ~~~~~~aGad~vvvGr~I~~a~d  193 (208)
T 2czd_A          171 AKDAVKAGADYIIVGRAIYNAPN  193 (208)
T ss_dssp             HHHHHHHTCSEEEECHHHHTSSS
T ss_pred             HHHHHHcCCCEEEEChHHhcCCC
Confidence            7777766 999999999987654

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=97.41  E-value=0.00094  Score=57.63  Aligned_cols=77  Identities=10%  Similarity=0.063  Sum_probs=54.7

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +..++ .|+|+|.+.+-... .+   ++. +.++.+|+.++++++.+ +++||++-|||. ++++.++++. ++||.+++
T Consensus       101 ~~~A~-~GaDyv~~g~vf~t-~s---k~~-~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~gVav~s  173 (210)
T 3ceu_A          101 VKNRK-HFYDYVFMSPIYDS-IS---KVN-YYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGGAVVLG  173 (210)
T ss_dssp             HHTTG-GGSSEEEECCCC--------------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSEEEESH
T ss_pred             HHHHh-hCCCEEEECCcCCC-CC---CCC-CCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCEEEEhH
Confidence            34445 89999987543210 00   011 12346899999998873 379999999998 8999999976 99999999


Q ss_pred             hhhhCC
Q psy2386         216 EAYKNP  221 (311)
Q Consensus       216 a~l~~P  221 (311)
                      +++..+
T Consensus       174 ~i~~~~  179 (210)
T 3ceu_A          174 DLWNKF  179 (210)
T ss_dssp             HHHTTC
T ss_pred             HhHcCC
Confidence            997643

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=97.41  E-value=0.00071  Score=58.70  Aligned_cols=133  Identities=18%  Similarity=0.225  Sum_probs=82.1

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN  129 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~  129 (311)
                      +-+. ..|+.+.   +.+.++|+|+|-++...+                .+.+.++++.+++. ++++.+.+ ++..   
T Consensus        66 ~~l~-d~p~~~~---~~~~~aGad~i~vh~~~~----------------~~~~~~~~~~~~~~-g~~~~~d~-l~~~---  120 (218)
T 3jr2_A           66 MKTT-DGGAILS---RMAFEAGADWITVSAAAH----------------IATIAACKKVADEL-NGEIQIEI-YGNW---  120 (218)
T ss_dssp             EEEC-SCHHHHH---HHHHHHTCSEEEEETTSC----------------HHHHHHHHHHHHHH-TCEEEEEC-CSSC---
T ss_pred             Eeec-ccHHHHH---HHHHhcCCCEEEEecCCC----------------HHHHHHHHHHHHHh-CCccceee-eecC---
Confidence            4555 4576654   556688999999984322                23456777777764 55443322 2321   


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      +   . +-+..+.+.|+|++.++ +.+....|..      -.+..++.+++++. . ++|+++.||| +++.+.++++. 
T Consensus       121 T---~-~~~~~~~~~g~d~v~~~~~~~~~~~g~~------~~~~~l~~i~~~~~-~-~~pi~v~GGI-~~~~~~~~~~aG  187 (218)
T 3jr2_A          121 T---M-QDAKAWVDLGITQAIYHRSRDAELAGIG------WTTDDLDKMRQLSA-L-GIELSITGGI-VPEDIYLFEGIK  187 (218)
T ss_dssp             C---H-HHHHHHHHTTCCEEEEECCHHHHHHTCC------SCHHHHHHHHHHHH-T-TCEEEEESSC-CGGGGGGGTTSC
T ss_pred             C---H-HHHHHHHHcCccceeeeeccccccCCCc------CCHHHHHHHHHHhC-C-CCCEEEECCC-CHHHHHHHHHcC
Confidence            1   1 23445566799998764 3222112210      01123455655554 3 7999999999 58999988876 


Q ss_pred             cCEEEEehhhhhC
Q psy2386         208 IDGVMLGREAYKN  220 (311)
Q Consensus       208 adgVmigRa~l~~  220 (311)
                      ||+|.+||+++..
T Consensus       188 Ad~vvvGsaI~~a  200 (218)
T 3jr2_A          188 TKTFIAGRALAGA  200 (218)
T ss_dssp             EEEEEESGGGSHH
T ss_pred             CCEEEEchhhcCC
Confidence            9999999998753

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=97.34  E-value=0.0028  Score=57.82  Aligned_cols=152  Identities=14%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CCCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeE
Q psy2386          45 EHPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDIT  118 (311)
Q Consensus        45 ~~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvs  118 (311)
                      +.|+++=+   +| +|+...+.++.+.++|+.+|.|-=... +|.+....|-.|....+.+.+|- +.+++   .+.++.
T Consensus        80 ~~PviaD~d~Gyg-~~~~v~~tv~~l~~aGaagv~iEDq~~-~Krcgh~~gk~l~~~~e~~~rI~-Aa~~A~~~~~~d~~  156 (302)
T 3fa4_A           80 STPVIADADTGYG-GPIMVARTTEQYSRSGVAAFHIEDQVQ-TKRCGHLAGKILVDTDTYVTRIR-AAVQARQRIGSDIV  156 (302)
T ss_dssp             TSCEEEECTTTTS-SHHHHHHHHHHHHHTTCCEEEECSBCC-C-------CCCBCCHHHHHHHHH-HHHHHHHHHTCCCE
T ss_pred             CCCEEEECCCCCC-CHHHHHHHHHHHHHcCCcEEEECCCCC-CcccCCCCCCeecCHHHHHHHHH-HHHHHHHhcCCCEE
Confidence            67888776   34 588899999999999999999975432 23222112334444334444444 44333   256777


Q ss_pred             EEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cC-
Q psy2386         119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GG-  194 (311)
Q Consensus       119 vKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---Gg-  194 (311)
                      |=-|..--.....++.++-++...++|+|.|-+++-+                 +.+.++++.+.++..|+.+|   || 
T Consensus       157 I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~-----------------~~~ei~~~~~~~~~~Pl~~n~~~~g~  219 (302)
T 3fa4_A          157 VIARTDSLQTHGYEESVARLRAARDAGADVGFLEGIT-----------------SREMARQVIQDLAGWPLLLNMVEHGA  219 (302)
T ss_dssp             EEEEECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCC-----------------CHHHHHHHHHHTTTSCEEEECCTTSS
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHcCCCEEeecCCC-----------------CHHHHHHHHHHhcCCceeEEEecCCC
Confidence            7777632111235577888999999999999998764                 45778999998845888776   22 


Q ss_pred             --CCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         195 --IKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       195 --I~s~~da~~~l~~adgVmigRa~l  218 (311)
                        ..|.++..++  .+..|..+-.++
T Consensus       220 ~p~~~~~eL~~l--Gv~~v~~~~~~~  243 (302)
T 3fa4_A          220 TPSISAAEAKEM--GFRIIIFPFAAL  243 (302)
T ss_dssp             SCCCCHHHHHHH--TCSEEEETTTTH
T ss_pred             CCCCCHHHHHHc--CCCEEEEchHHH
Confidence              3455555443  377777775543

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=97.30  E-value=0.0032  Score=54.37  Aligned_cols=136  Identities=13%  Similarity=0.134  Sum_probs=86.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      +=+-+. ..|+.+.+   .+.++|+|.|-+|....                .+-+.+.++.+++. +.++.+++-.+++ 
T Consensus        61 lD~kl~-dip~t~~~---~~~~~Gad~itvh~~~g----------------~~~l~~~~~~~~~~-g~~~~~~ll~~~t-  118 (216)
T 1q6o_A           61 ADAKIA-DAGKILSR---MCFEANADWVTVICCAD----------------INTAKGALDVAKEF-NGDVQIELTGYWT-  118 (216)
T ss_dssp             EEEEEC-SCHHHHHH---HHHHTTCSEEEEETTSC----------------HHHHHHHHHHHHHT-TCEEEEEECSCCC-
T ss_pred             EEEEec-ccHHHHHH---HHHhCCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCCceeeeeeCCC-
Confidence            345565 46887765   45679999999994321                23355666777663 7776665542333 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHH
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l  205 (311)
                       .      .-++.+++.|.+.+.+|- +.....|+.|         ..+.++++++..+ ++||++-|||+ ++.+.+++
T Consensus       119 -~------~~~~~l~~~~~~~~vl~~a~~~~~~G~~g---------~~~~i~~lr~~~~~~~~i~v~GGI~-~~~~~~~~  181 (216)
T 1q6o_A          119 -W------EQAQQWRDAGIGQVVYHRSRDAQAAGVAW---------GEADITAIKRLSDMGFKVTVTGGLA-LEDLPLFK  181 (216)
T ss_dssp             -H------HHHHHHHHTTCCEEEEECCHHHHHTTCCC---------CHHHHHHHHHHHHTTCEEEEESSCC-GGGGGGGT
T ss_pred             -h------hhHHHHHhcCcHHHHHHHHHHHHhcCCCC---------CHHHHHHHHHhcCCCCcEEEECCcC-hhhHHHHH
Confidence             1      122445566877777763 2221234432         2355666665442 58899999998 78888888


Q ss_pred             hh-cCEEEEehhhhhCCc
Q psy2386         206 NY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       206 ~~-adgVmigRa~l~~P~  222 (311)
                      +. ||++.+||+++..+.
T Consensus       182 ~aGad~ivvG~~I~~a~d  199 (216)
T 1q6o_A          182 GIPIHVFIAGRSIRDAAS  199 (216)
T ss_dssp             TSCCSEEEESHHHHTSSC
T ss_pred             HcCCCEEEEeehhcCCCC
Confidence            76 999999999987544

>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A

Probab=97.27  E-value=0.00064  Score=64.56  Aligned_cols=135  Identities=11%  Similarity=-0.061  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      +.++.+.+.||..+-+..|-|...  ....|..-..+++.-.+.++++|+++  ++++.|...-+|+.    ++..++++
T Consensus       158 ~~a~~~~~~G~~~~Kik~g~~~~~--~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~----~~A~~~~~  231 (400)
T 4dxk_A          158 ELAHSLLEDGITAMKIWPFDAAAE--KTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQL----LPAMQIAK  231 (400)
T ss_dssp             HHHHHHHHTTCCEEEECTTHHHHH--HHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCH----HHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEcCCCcccc--ccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCH----HHHHHHHH
Confidence            344456678999999986532110  00011101124566778899999987  47888877767764    35688999


Q ss_pred             HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhh
Q psy2386         140 TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREA  217 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~  217 (311)
                      .|++.|+++|--                ..++-|++..+++++.. ++||.+.+.+.+++++.++++.  +|.|++--+-
T Consensus       232 ~L~~~~i~~iEe----------------P~~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~  294 (400)
T 4dxk_A          232 ALTPYQTFWHED----------------PIKMDSLSSLTRYAAVS-PAPISASETLGSRWAFRDLLETGAAGVVMLDISW  294 (400)
T ss_dssp             HTGGGCCSEEEC----------------CBCTTSGGGHHHHHHHC-SSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTT
T ss_pred             HHhhcCCCEEEc----------------CCCcccHHHHHHHHHhC-CCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccc
Confidence            999999998841                01224777888999998 7999999999999999999975  9999986444


Q ss_pred             hh
Q psy2386         218 YK  219 (311)
Q Consensus       218 l~  219 (311)
                      .+
T Consensus       295 ~G  296 (400)
T 4dxk_A          295 CG  296 (400)
T ss_dssp             TT
T ss_pred             cC
Confidence            33

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=97.20  E-value=0.0025  Score=57.42  Aligned_cols=98  Identities=13%  Similarity=0.188  Sum_probs=67.2

Q ss_pred             CHHHHHH-HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe------------
Q psy2386          56 EPKKLAK-SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR------------  122 (311)
Q Consensus        56 ~~~~~~~-aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR------------  122 (311)
                      +|++..+ |.++++++|+++|.|--|                   +.+.+.|+++.++ ++||.-=+-            
T Consensus       110 s~~~a~~na~rl~~eaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiGLtPqsv~~~ggf  169 (281)
T 1oy0_A          110 GPTAALAAATRFLKDGGAHAVKLEGG-------------------ERVAEQIACLTAA-GIPVMAHIGFTPQSVNTLGGF  169 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEEBS-------------------GGGHHHHHHHHHH-TCCEEEEEECCC---------
T ss_pred             CHHHHHHHHHHHHHHhCCeEEEECCc-------------------HHHHHHHHHHHHC-CCCEEeeecCCcceecccCCe
Confidence            6877555 666777799999999633                   2344555666554 788762111            


Q ss_pred             --ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         123 --IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       123 --~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                        .|-++  ..+++++-++.++++|++.|.+.+-.                  -+.++++.+.+ ++|+|+-|.
T Consensus       170 ~v~grt~--~a~~~i~rA~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIGa  222 (281)
T 1oy0_A          170 RVQGRGD--AAEQTIADAIAVAEAGAFAVVMEMVP------------------AELATQITGKL-TIPTVGIGA  222 (281)
T ss_dssp             -----CH--HHHHHHHHHHHHHHHTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESS
T ss_pred             EEEeCcH--HHHHHHHHHHHHHHcCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeCC
Confidence              11121  23568888999999999999997642                  26788999998 799998763

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=97.18  E-value=0.0044  Score=55.63  Aligned_cols=107  Identities=10%  Similarity=0.110  Sum_probs=73.9

Q ss_pred             CeEEEec--C--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          47 PIAFQVG--D--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        47 p~~~Ql~--g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      ++++-+-  +  .+|++..+.|.++.++|+++|.|--|                   +.+.+.|+++.++ ++||..=+.
T Consensus        80 ~vvaD~pfgsy~~s~~~a~~na~rl~kaGa~aVklEdg-------------------~e~~~~I~al~~a-gIpV~gHiG  139 (275)
T 1o66_A           80 MIVSDLPFGAYQQSKEQAFAAAAELMAAGAHMVKLEGG-------------------VWMAETTEFLQMR-GIPVCAHIG  139 (275)
T ss_dssp             EEEEECCTTSSSSCHHHHHHHHHHHHHTTCSEEEEECS-------------------GGGHHHHHHHHHT-TCCEEEEEE
T ss_pred             eEEEECCCCCccCCHHHHHHHHHHHHHcCCcEEEECCc-------------------HHHHHHHHHHHHc-CCCeEeeec
Confidence            4556654  2  36888888777777799999999633                   2345556666553 788863332


Q ss_pred             c--------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe
Q psy2386         123 I--------------GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE  188 (311)
Q Consensus       123 ~--------------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip  188 (311)
                      +              |-+  +..+++++-++.++++|++.|.+.+-.                  -+.++++.+.+ ++|
T Consensus       140 LtPQs~~~~ggf~v~grt--~~a~~~i~rA~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP  198 (275)
T 1o66_A          140 LTPQSVFAFGGYKVQGRG--GKAQALLNDAKAHDDAGAAVVLMECVL------------------AELAKKVTETV-SCP  198 (275)
T ss_dssp             SCGGGTTC-------------CHHHHHHHHHHHHHTTCSEEEEESCC------------------HHHHHHHHHHC-SSC
T ss_pred             cCceeecccCCeEEEeCh--HHHHHHHHHHHHHHHcCCcEEEEecCC------------------HHHHHHHHHhC-CCC
Confidence            1              212  223578889999999999999987642                  26788999998 799


Q ss_pred             EEEecC
Q psy2386         189 IIINGG  194 (311)
Q Consensus       189 vi~nGg  194 (311)
                      +|+-|.
T Consensus       199 ~igIGa  204 (275)
T 1o66_A          199 TIGIGA  204 (275)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            998763

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=97.16  E-value=0.0011  Score=76.62  Aligned_cols=144  Identities=18%  Similarity=0.212  Sum_probs=97.3

Q ss_pred             CCCCCeEEEecCCCHHHH------HHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386          43 AEEHPIAFQVGDNEPKKL------AKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~------~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~  114 (311)
                      +.+.|+.+.++-.+|..+      .+..+.+.+.|  +|+|=+.+|.|.               ++...++++.+++. +
T Consensus       480 ~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~---------------~ee~~~~i~~l~~~-G  543 (3089)
T 3zen_D          480 EPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPD---------------LEEAVDIIDELNEV-G  543 (3089)
T ss_dssp             CTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCC---------------HHHHHHHHTSTTHH-H
T ss_pred             CCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCc---------------hhHhHHHHHHHHHc-C
Confidence            346788888887777542      24556677788  788888878773               24455666666654 4


Q ss_pred             ceeEE-EEeccCCCCCcHHHHHHHHHHHHHcCCC------EEEEecCccccccCCCCcCCCCCcCcHHHH----HHHHHh
Q psy2386         115 IDITV-KHRIGIDDINSYDFVRDFVGTVSSAGCR------TFIVHARNAFLKKLNPKQNRKIPILKYNFV----YNLKKD  183 (311)
Q Consensus       115 ~pvsv-KiR~g~~~~~~~~~~~e~~~~l~~~G~~------~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i----~~i~~~  183 (311)
                      +.+.. +...           .+-++++++.|++      .|++.|-++  +|..+..      .-...+    .++++.
T Consensus       544 i~~i~~~~~t-----------~~~a~~~~~i~~d~~~~~y~vv~~G~ea--GGH~g~~------~~~~ll~~~~~~ir~~  604 (3089)
T 3zen_D          544 ISHVVFKPGT-----------VEQIRSVIRIAAEVPTKPVIVHIEGGRA--GGHHSWE------DLDDLLLATYSELRSR  604 (3089)
T ss_dssp             HCSEEECCCS-----------HHHHHHHHHHHTTSTTSCEEEEECCSSS--SEECCSC------CHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeCCC-----------HHHHHHHHHhhhhcCCCcEEEEEeCCCc--CCCCCcc------cHHHHHHHHHHHHhhc
Confidence            44322 3221           3456667777777      788877663  3332221      112445    677776


Q ss_pred             CCCCeEEEecCCCCHHHHHHHH-----------hh-cCEEEEehhhhhCCc
Q psy2386         184 FPELEIIINGGIKTKKEIDLHL-----------NY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l-----------~~-adgVmigRa~l~~P~  222 (311)
                      . ++||++.|||.+++++..++           .. ||||++|+.++.-+.
T Consensus       605 ~-~iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~E  654 (3089)
T 3zen_D          605 S-NITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLE  654 (3089)
T ss_dssp             T-TEEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTT
T ss_pred             C-CCeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcc
Confidence            6 89999999999999999999           54 999999999987654

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=97.14  E-value=0.0029  Score=59.32  Aligned_cols=97  Identities=14%  Similarity=0.201  Sum_probs=69.3

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++...+.++.+++.-..+|.+  -++....     ..+.++.+.++|++.|.++.-.    |.+        +.-.+.|
T Consensus        80 s~e~~~~~i~~vk~~~~l~vga--~vg~~~~-----~~~~~~~lieaGvd~I~idta~----G~~--------~~~~~~I  140 (366)
T 4fo4_A           80 SIEQQAAQVHQVKISGGLRVGA--AVGAAPG-----NEERVKALVEAGVDVLLIDSSH----GHS--------EGVLQRI  140 (366)
T ss_dssp             CHHHHHHHHHHHHTTTSCCCEE--ECCSCTT-----CHHHHHHHHHTTCSEEEEECSC----TTS--------HHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCceeEEE--EeccChh-----HHHHHHHHHhCCCCEEEEeCCC----CCC--------HHHHHHH
Confidence            5777788888888753344443  3343322     2577899999999999986321    110        1124678


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +++++.+|++||++ |.+.|+++++++.+. ||+|.+|
T Consensus       141 ~~ik~~~p~v~Vi~-G~v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          141 RETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             HHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHhcCCCceEe-eeeCCHHHHHHHHHcCCCEEEEe
Confidence            89999887888876 789999999999877 9999995

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=97.11  E-value=0.0064  Score=54.14  Aligned_cols=140  Identities=18%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             CCeEEEe---cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEE
Q psy2386          46 HPIAFQV---GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITV  119 (311)
Q Consensus        46 ~p~~~Ql---~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsv  119 (311)
                      .|+++=+   +|+++   .+.++.+.++|+++|.|-=+...+       |. -+-+.+...+-|++++++.   ++|+.|
T Consensus        81 ~pviaD~~~Gyg~~~---~~~~~~l~~aGa~gv~iEd~~~~~-------~k-~l~~~~e~~~~I~a~~~a~~~~g~~~~v  149 (255)
T 2qiw_A           81 IPVSVDVESGYGLSP---ADLIAQILEAGAVGINVEDVVHSE-------GK-RVREAQEHADYIAAARQAADVAGVDVVI  149 (255)
T ss_dssp             SCEEEECTTCTTCCH---HHHHHHHHHTTCCEEEECSEEGGG-------TT-EECCHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCEEeccCCCcCcHH---HHHHHHHHHcCCcEEEECCCCCCC-------CC-cccCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            6777765   35566   666666667999999997543110       22 2345566666677776652   688777


Q ss_pred             EEecc-----CCC-CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-
Q psy2386         120 KHRIG-----IDD-INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-  192 (311)
Q Consensus       120 KiR~g-----~~~-~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-  192 (311)
                      --|.+     .++ .+..+++++-++.++++|++.|.+++-.                 +.+.++++.+.+ ++|+-.+ 
T Consensus       150 ~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~~-----------------~~~~~~~i~~~~-~~P~n~~~  211 (255)
T 2qiw_A          150 NGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGLS-----------------TAEQVERLVDAV-SVPVNITA  211 (255)
T ss_dssp             EEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCCC-----------------SHHHHHHHHTTC-SSCBEEEC
T ss_pred             EEEechhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCCC-----------------CHHHHHHHHHhC-CCCEEEEe
Confidence            66754     221 2235678888999999999999998753                 457899999998 6887665 


Q ss_pred             -cCC----CCHHHHHHHHhhcCEEEEehh
Q psy2386         193 -GGI----KTKKEIDLHLNYIDGVMLGRE  216 (311)
Q Consensus       193 -GgI----~s~~da~~~l~~adgVmigRa  216 (311)
                       ++-    .|.++..++  .+..|..|-.
T Consensus       212 ~~~~~~p~~~~~eL~~l--Gv~~v~~~~~  238 (255)
T 2qiw_A          212 HPVDGHGAGDLATLAGL--GVRRVTFGPL  238 (255)
T ss_dssp             BTTTBBTTBCHHHHHHT--TCCEEECTTH
T ss_pred             cCCCCCCCCCHHHHHHc--CCCEEEEHHH
Confidence             333    344333322  2777766644

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=97.10  E-value=0.0052  Score=55.23  Aligned_cols=75  Identities=13%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +++...+-|+...+.|+|.||||++.+            ..+.++.+..+++++++.+++|++|-..-           .
T Consensus        32 ~~~~a~~~a~~~v~~GAdiIDIg~~s~------------~~eE~~rv~~vi~~l~~~~~~pisIDT~~-----------~   88 (271)
T 2yci_X           32 DPRPIQEWARRQAEKGAHYLDVNTGPT------------ADDPVRVMEWLVKTIQEVVDLPCCLDSTN-----------P   88 (271)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEECCSC------------SSCHHHHHHHHHHHHHHHCCCCEEEECSC-----------H
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEcCCcC------------chhHHHHHHHHHHHHHHhCCCeEEEeCCC-----------H
Confidence            345555556666678999999997663            33568899999999999889999996441           3


Q ss_pred             HHHHHHHHc--CCCEEE-Eec
Q psy2386         136 DFVGTVSSA--GCRTFI-VHA  153 (311)
Q Consensus       136 e~~~~l~~~--G~~~it-vh~  153 (311)
                      +.++...++  |++.|- +.+
T Consensus        89 ~v~~aal~a~~Ga~iINdvs~  109 (271)
T 2yci_X           89 DAIEAGLKVHRGHAMINSTSA  109 (271)
T ss_dssp             HHHHHHHHHCCSCCEEEEECS
T ss_pred             HHHHHHHHhCCCCCEEEECCC
Confidence            556666666  887774 443

>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}

Probab=97.09  E-value=0.0033  Score=59.40  Aligned_cols=135  Identities=8%  Similarity=0.126  Sum_probs=94.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|+-..+...+|+.+++.++...+.||..|-+..|..               +++.-.+.++++|+.+ +..+.|-..-
T Consensus       133 ~v~~~~t~~~~~~e~~~~~a~~~~~~G~~~iKlKvg~~---------------~~~~d~~~v~avR~~~~~~~L~vDaN~  197 (389)
T 3s5s_A          133 ALTTDITITTGSPERAEEAARRAAAMGFRALKVKVGGR---------------LAASDPARIEAIHAAAPGASLILDGNG  197 (389)
T ss_dssp             EEECCEEECSSCSHHHHHHHHHHHHHTCCEEEEECCGG---------------GTTTHHHHHHHHHHHCTTCEEEEECTT
T ss_pred             ceEEEeeecCCCHHHHHHHHHHHHHcCCCeEEEEecCC---------------ChHHHHHHHHHHHHhCCCCeEEEECCC
Confidence            34455677778999999988888778999999976532               1233344566777765 3344444444


Q ss_pred             cCCCCCcHHHHHHHHHHH--HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTV--SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l--~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +|+    .++..++++.+  ++.++.+|               ++ ..++-|++..+++++.. .+||.+.=.+.+..|+
T Consensus       198 ~w~----~~~A~~~~~~L~~~~~~i~~i---------------Ee-P~~~~d~~~~~~l~~~~-~iPIa~dEs~~~~~~~  256 (389)
T 3s5s_A          198 GLT----AGEALALVAHARRLGADVALL---------------EQ-PVPRDDWDGMKEVTRRA-GVDVAADESAASAEDV  256 (389)
T ss_dssp             CSC----HHHHHHHHHHHHHTTCEEEEE---------------EC-CSCTTCHHHHHHHHHHS-SSCEEESTTCSSHHHH
T ss_pred             CCC----HHHHHHHHHHHhhCCCCeEEE---------------EC-CCCcccHHHHHHHHhhC-CCCEEECCCCCCHHHH
Confidence            554    33567889999  44444444               11 12235899999999988 7999998899999999


Q ss_pred             HHHHhh--cCEEEEeh
Q psy2386         202 DLHLNY--IDGVMLGR  215 (311)
Q Consensus       202 ~~~l~~--adgVmigR  215 (311)
                      .++++.  +|.|++==
T Consensus       257 ~~~i~~~a~d~v~~k~  272 (389)
T 3s5s_A          257 LRVAAERAATVVNIKL  272 (389)
T ss_dssp             HHHHHTTCCSEEEECH
T ss_pred             HHHHHcCCCCEEEecC
Confidence            999875  99998853

>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}

Probab=97.06  E-value=0.0028  Score=60.02  Aligned_cols=144  Identities=10%  Similarity=0.053  Sum_probs=97.4

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      .|+-..+...+|+++++.++...+.||..|-+..|.+.+..       .-...++.-.+.++++|+++ +..+.|-..-+
T Consensus       155 v~~~~t~~~~~~e~~~~~a~~~~~~Gf~~iKlKvg~~~~~~-------~~~~~~~~di~~v~avR~a~~d~~L~vDaN~~  227 (393)
T 3u9i_A          155 LETDVTITTGSVTAAARAAQAIVARGVTTIKIKIGAGDPDA-------TTIRTMEHDLARIVAIRDVAPTARLILDGNCG  227 (393)
T ss_dssp             EECCEEEC---CHHHHHHHHHHHTTTCCEEEEECC--------------CHHHHHHHHHHHHHHHHHSTTSEEEEECCSC
T ss_pred             eEEEEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCcccc-------cccccHHHHHHHHHHHHHHCCCCeEEEEccCC
Confidence            44555677789999999998888889999999887653210       00122455566778888876 34455544445


Q ss_pred             CCCCCcHHHHHHHHHHH--HHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTV--SSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l--~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      |+.    ++..++++.+  ++.++.+|-               + ..++-|++..+++++.. .+||.+.=.+.|..++.
T Consensus       228 w~~----~~A~~~~~~L~~~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~  286 (393)
T 3u9i_A          228 YTA----PDALRLLDMLGVHGIVPALFE---------------Q-PVAKDDEEGLRRLTATR-RVPVAADESVASATDAA  286 (393)
T ss_dssp             CCH----HHHHHHHHTTTTTTCCCSEEE---------------C-CSCTTCTTHHHHHHHTC-SSCEEESTTCCSHHHHH
T ss_pred             CCH----HHHHHHHHHHhhCCCCeEEEE---------------C-CCCCCcHHHHHHHHhhC-CCcEEeCCcCCCHHHHH
Confidence            553    3567888888  667777761               1 12234788899999987 69999988999999999


Q ss_pred             HHHhh--cCEEEEehhh
Q psy2386         203 LHLNY--IDGVMLGREA  217 (311)
Q Consensus       203 ~~l~~--adgVmigRa~  217 (311)
                      ++++.  +|.|++==+-
T Consensus       287 ~~i~~~a~d~i~~k~~~  303 (393)
T 3u9i_A          287 RLARNAAVDVLNIKLMK  303 (393)
T ss_dssp             HHHHTTCCSEEEECHHH
T ss_pred             HHHHcCCCCEEEecccc
Confidence            99975  9999885443

>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1

Probab=97.04  E-value=0.012  Score=55.01  Aligned_cols=138  Identities=12%  Similarity=0.134  Sum_probs=100.7

Q ss_pred             eEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc
Q psy2386          48 IAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g  124 (311)
                      +...+. +.+++.+.++++.+.+.||..+-+..|-.               +++.-.+.++++++.+  ++.+.|-..-+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~K~Kvg~~---------------~~~~d~~~v~avr~~~g~~~~l~vDaN~~  198 (370)
T 2chr_A          134 IAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVNQA  198 (370)
T ss_dssp             BEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS---------------CHHHHHHHHHHHHHHTTTTSEEEEECTTC
T ss_pred             eeeeeccCchhhhHHHHHHHHhhcccceeecccccC---------------ChHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence            333444 45677788888889999999988865532               3444456677888776  45666666667


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      |+..    +..++++.+++.++.+|-               + ..++-|++..+++++.. ++||.+.=.+.|..|+.++
T Consensus       199 ~~~~----~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~  257 (370)
T 2chr_A          199 WDEQ----VASVYIPELEALGVELIE---------------Q-PVGRENTQALRRLSDNN-RVAIMADESLSTLASAFDL  257 (370)
T ss_dssp             CCTH----HHHHHHHHHHTTTCCEEE---------------C-CSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHHHHH
T ss_pred             CCHH----HHHHHHHHHHhcCCceec---------------C-CCChhhhhhhhHHhhhc-cCCccCCccCCCHHHHHHH
Confidence            7643    568899999999988871               1 12335889999999998 7999998899999999999


Q ss_pred             Hhh--cCEEEEehhhhhCC
Q psy2386         205 LNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       205 l~~--adgVmigRa~l~~P  221 (311)
                      ++.  +|.|++==.-.+..
T Consensus       258 ~~~~a~d~i~~d~~~~GGi  276 (370)
T 2chr_A          258 ARDRSVDVFSLKLCNMGGV  276 (370)
T ss_dssp             HTTTCCSEECCCHHHHTSH
T ss_pred             HHcCCCcEEEeCCcccCCH
Confidence            975  99888754444433

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=97.03  E-value=0.011  Score=51.41  Aligned_cols=135  Identities=19%  Similarity=0.158  Sum_probs=81.6

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDD  127 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~  127 (311)
                      +-+. ..|+.++++   +.++|+|.|.+|..+.                .+-+.+.++++++.-.  ..+.|-+-..++ 
T Consensus        65 lKl~-Dip~t~~~~---~~~~Gad~vtVH~~~g----------------~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~-  123 (221)
T 3exr_A           65 TKCA-DAGGTVAKN---NAVRGADWMTCICSAT----------------IPTMKAARKAIEDINPDKGEIQVELYGDWT-  123 (221)
T ss_dssp             EEEC-SCHHHHHHH---HHTTTCSEEEEETTSC----------------HHHHHHHHHHHHHHCTTTCEEEEECCSSCC-
T ss_pred             EEee-ccHHHHHHH---HHHcCCCEEEEeccCC----------------HHHHHHHHHHHHhcCCCcceEEEEEcCCCC-
Confidence            4555 668888766   5678999999995433                2335556666655321  223333332221 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEec-CccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHH
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHA-RNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~-Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l  205 (311)
                             .+-++.+.+.|++.+.+|- +.....|..         ...+.++.+++.. +++++...||| +++++.++.
T Consensus       124 -------~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv---------~s~~e~~~ir~~~~~~~~i~v~gGI-~~~~~~~~~  186 (221)
T 3exr_A          124 -------YDQAQQWLDAGISQAIYHQSRDALLAGET---------WGEKDLNKVKKLIEMGFRVSVTGGL-SVDTLKLFE  186 (221)
T ss_dssp             -------HHHHHHHHHTTCCEEEEECCHHHHHHTCC---------CCHHHHHHHHHHHHHTCEEEEESSC-CGGGGGGGT
T ss_pred             -------HHHHHHHHcCCHHHHHHHHHHhcCCCccc---------cCHHHHHHHHHhhcCCceEEEECCC-CHHHHHHHH
Confidence                   2334456778999988873 222222311         1233455555433 25889999999 567777666


Q ss_pred             hh-cCEEEEehhhhhCCc
Q psy2386         206 NY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       206 ~~-adgVmigRa~l~~P~  222 (311)
                      +. ||.+.+||+++..+.
T Consensus       187 ~aGad~~VvG~~I~~a~d  204 (221)
T 3exr_A          187 GVDVFTFIAGRGITEAKN  204 (221)
T ss_dssp             TCCCSEEEECHHHHTSSS
T ss_pred             HCCCCEEEECchhhCCCC
Confidence            55 999999999876543

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=97.02  E-value=0.013  Score=53.98  Aligned_cols=149  Identities=15%  Similarity=0.165  Sum_probs=86.1

Q ss_pred             HHHHHHHcCCCEEEeccC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE--ec-cCCCCCcH------
Q psy2386          63 SAKIIQKWGYDEINLNCG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH--RI-GIDDINSY------  131 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi--R~-g~~~~~~~------  131 (311)
                      .++.+.+.|+|+|-+.+-  ...+.-.+       .+..+.+.++.+++++ .++|+.+=+  +. +..+..+.      
T Consensus       115 sve~a~~~GADAVk~lv~~g~d~~~e~~-------~~q~~~l~rv~~ec~~-~GiPlllEil~y~~~~~~~~~~~~a~~~  186 (332)
T 3iv3_A          115 SIKRLKEAGADAVKFLLYYDVDGDPQVN-------VQKQAYIERIGSECQA-EDIPFFLEILTYDETISNNSSVEFAKVK  186 (332)
T ss_dssp             CHHHHHHTTCSEEEEEEEECTTSCHHHH-------HHHHHHHHHHHHHHHH-HTCCEEEEEEECBTTBSCTTSHHHHTTH
T ss_pred             CHHHHHHcCCCEEEEEEEcCCCchHHHH-------HHHHHHHHHHHHHHHH-cCCceEEEEeccCCCCCCCcchhhhccC
Confidence            467788899999877632  11110000       0123466666666655 399988754  32 11122111      


Q ss_pred             -HHHHHHHHHH--HHcCCCEEEEec-Ccc-ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-EecCCCCHHHHHHHH
Q psy2386         132 -DFVRDFVGTV--SSAGCRTFIVHA-RNA-FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-INGGIKTKKEIDLHL  205 (311)
Q Consensus       132 -~~~~e~~~~l--~~~G~~~itvh~-Rt~-~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~nGgI~s~~da~~~l  205 (311)
                       +.+...++.+  .+.|+|.+-+.- .+. ...|+...+.-|+.....+..+++.+.. .+|+| .+||+ |.++..+++
T Consensus       187 p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~-~~P~v~lsgG~-~~~~fl~~v  264 (332)
T 3iv3_A          187 VHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEAST-DLPYIYLSAGV-SAELFQETL  264 (332)
T ss_dssp             HHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTC-SSCEEEECTTC-CHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcC-CCCEEEECCCC-CHHHHHHHH
Confidence             1255667777  577999998751 111 1123332222222211224466777776 69965 79998 677888777


Q ss_pred             hh-----c--CEEEEehhhhhCC
Q psy2386         206 NY-----I--DGVMLGREAYKNP  221 (311)
Q Consensus       206 ~~-----a--dgVmigRa~l~~P  221 (311)
                      +.     |  .||.+||....+.
T Consensus       265 ~~A~~aGa~f~Gv~~GRnvwq~~  287 (332)
T 3iv3_A          265 VFAHKAGAKFNGVLCGRATWAGS  287 (332)
T ss_dssp             HHHHHHTCCCCEEEECHHHHTTH
T ss_pred             HHHHHcCCCcceEEeeHHHHHhh
Confidence            42     8  9999999997774

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.94  E-value=0.0051  Score=56.94  Aligned_cols=96  Identities=16%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcC--CCEEEEecCccccccCCCCcCCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAG--CRTFIVHARNAFLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G--~~~itvh~Rt~~~~G~~g~~~~~~~~~~~  174 (311)
                      .+++...+.++.+++. +.|+++.+  |+..     +..+.++.+.+.|  ++.+.++..    +|.        +...|
T Consensus        78 ~~~~~~~~~i~~~~~~-g~~v~v~~--g~~~-----~~~~~a~~~~~~g~~~~~i~i~~~----~G~--------~~~~~  137 (336)
T 1ypf_A           78 FQPEKRISFIRDMQSR-GLIASISV--GVKE-----DEYEFVQQLAAEHLTPEYITIDIA----HGH--------SNAVI  137 (336)
T ss_dssp             SSGGGHHHHHHHHHHT-TCCCEEEE--CCSH-----HHHHHHHHHHHTTCCCSEEEEECS----SCC--------SHHHH
T ss_pred             CCCHHHHHHHHHHHhc-CCeEEEeC--CCCH-----HHHHHHHHHHhcCCCCCEEEEECC----CCC--------cHHHH
Confidence            3455566777776653 67888873  5432     2356788899999  999988642    121        12468


Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +.|+++++.++ .|++..|.|.|+++++++.+. ||+|.+
T Consensus       138 ~~i~~lr~~~~-~~~vi~G~v~s~e~A~~a~~aGad~Ivv  176 (336)
T 1ypf_A          138 NMIQHIKKHLP-ESFVIAGNVGTPEAVRELENAGADATKV  176 (336)
T ss_dssp             HHHHHHHHHCT-TSEEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhCC-CCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence            99999999984 444556779999999999987 999999

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.87  E-value=0.0019  Score=60.43  Aligned_cols=69  Identities=16%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ...+.++.+.++|+|.|++|.-.    |++        ..-|+.|+++++..|++||++ |+|.|+++++.+.+. ||+|
T Consensus       100 ~~~e~~~~a~~aGvdvI~id~a~----G~~--------~~~~e~I~~ir~~~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I  166 (361)
T 3r2g_A          100 NELQRAEALRDAGADFFCVDVAH----AHA--------KYVGKTLKSLRQLLGSRCIMA-GNVATYAGADYLASCGADII  166 (361)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECSC----CSS--------HHHHHHHHHHHHHHTTCEEEE-EEECSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCC----CCc--------HhHHHHHHHHHHhcCCCeEEE-cCcCCHHHHHHHHHcCCCEE
Confidence            35788999999999999997432    111        124788999999876789887 679999999999987 9999


Q ss_pred             EEe
Q psy2386         212 MLG  214 (311)
Q Consensus       212 mig  214 (311)
                      .+|
T Consensus       167 ~Vg  169 (361)
T 3r2g_A          167 KAG  169 (361)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            995

>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A

Probab=96.87  E-value=0.0045  Score=58.40  Aligned_cols=126  Identities=11%  Similarity=0.059  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      +.+++.+++.++.+.+.||..+-+..|-+               +++.=.+.++++|+++  ++.+.|-..-+|+.    
T Consensus       162 ~~~~~~~~~~~~~~~~~G~~~~Kikvg~~---------------~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~----  222 (388)
T 4h83_A          162 GEPLGSIADEMHNYQELGLAGVKFKVGGL---------------SAAEDAARITAAREAAGDDFIICIDANQGYKP----  222 (388)
T ss_dssp             TCTTCSHHHHHHHHHHHTBSEEEEECSSS---------------CHHHHHHHHHHHHHHHCSSSEEEEECTTCBCH----
T ss_pred             CCCHHHHHHHHHHHHHcCCceEeecCCCC---------------CHHHHHHHHHHHHHhcCCCeEEEEecCcCCCH----
Confidence            44567888888888888999999875422               2333345677777776  46666766666754    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ++..++++.+++.++.+|-               +.-.+.-|++..+++++.. ++||.+.=.+.|..|+.++++.  +|
T Consensus       223 ~~A~~~~~~l~~~~~~~iE---------------eP~~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d  286 (388)
T 4h83_A          223 AVAVDLSRRIADLNIRWFE---------------EPVEWHNDKRSMRDVRYQG-SVPVCAGQTEFSASGCRDLMETGAID  286 (388)
T ss_dssp             HHHHHHHHHTTTSCCCCEE---------------SCBCSTTHHHHHHHHHHHS-SSCEEECTTCSSHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHHhhhcCcceee---------------cCcccccchHHHHHHHhhc-CCCccCCccccChHhHHHHHHcCCCC
Confidence            3568899999999888772               1111113577888999988 7999998899999999999975  99


Q ss_pred             EEEEe
Q psy2386         210 GVMLG  214 (311)
Q Consensus       210 gVmig  214 (311)
                      .|++=
T Consensus       287 ~i~~d  291 (388)
T 4h83_A          287 VCNFD  291 (388)
T ss_dssp             EECCC
T ss_pred             eEeec
Confidence            88774

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.86  E-value=0.0072  Score=56.54  Aligned_cols=94  Identities=11%  Similarity=0.229  Sum_probs=72.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++...+.++.+++..+.||.+-+-..  .       .+.++.+.++|++.|+++.-.    |.        +..-.+.+
T Consensus        79 s~e~~~~~I~~vk~~~~~pvga~ig~~--~-------~e~a~~l~eaGad~I~ld~a~----G~--------~~~~~~~i  137 (361)
T 3khj_A           79 DMESQVNEVLKVKNSGGLRVGAAIGVN--E-------IERAKLLVEAGVDVIVLDSAH----GH--------SLNIIRTL  137 (361)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEEECTT--C-------HHHHHHHHHTTCSEEEECCSC----CS--------BHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccCceEEEEeCCC--H-------HHHHHHHHHcCcCeEEEeCCC----CC--------cHHHHHHH
Confidence            567778888999887788988876432  1       467888999999999986332    11        01124778


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +++++.+ ++||++ |++.|+++++++.+. +|+|.+|
T Consensus       138 ~~i~~~~-~~~Viv-g~v~t~e~A~~l~~aGaD~I~VG  173 (361)
T 3khj_A          138 KEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKVG  173 (361)
T ss_dssp             HHHHHHC-CCEEEE-EEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHhc-CCcEEE-ccCCCHHHHHHHHHcCcCEEEEe
Confidence            8999988 799987 678999999999877 9999996

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.84  E-value=0.0082  Score=53.39  Aligned_cols=82  Identities=7%  Similarity=-0.013  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+++.|+++|.|-.-....+|            ..+.+..+++.+ ++||..-+.|.+..++.+.++. ||+|
T Consensus        66 ~p~~~A~~~~~~GA~~isvlt~~~~f~G------------~~~~l~~i~~~v-~lPvl~kdfI~d~~qi~~a~~~GAD~V  132 (254)
T 1vc4_A           66 DPVEAALAYARGGARAVSVLTEPHRFGG------------SLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAA  132 (254)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECCCSSSCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHcCCCEEEEecchhhhcc------------CHHHHHHHHHhc-CCCEEECCcCCCHHHHHHHHHcCCCEE
Confidence            3579999999999999988432222222            467788888888 8999999999999999888876 9999


Q ss_pred             EEehhhhhCCcchHHhHh
Q psy2386         212 MLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~  229 (311)
                      .++-..+.  ..++++.+
T Consensus       133 lL~~~~l~--~~l~~l~~  148 (254)
T 1vc4_A          133 LLIVALLG--ELTGAYLE  148 (254)
T ss_dssp             EEEHHHHG--GGHHHHHH
T ss_pred             EECccchH--HHHHHHHH
Confidence            99999987  44555443

>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A

Probab=96.82  E-value=0.017  Score=53.22  Aligned_cols=124  Identities=8%  Similarity=0.111  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+.+.+.++.+.+.||..+-|..|.               .+++.-.+.++++|+.++  +.+.|-..-+|+.    +
T Consensus       115 ~~~e~~~~~a~~~~~~G~~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~~L~vDaN~~~~~----~  175 (332)
T 2ozt_A          115 GSGQAALEQWQQSWQRGQTTFKWKVGV---------------MSPEEEQAILKALLAALPPGAKLRLDANGSWDR----A  175 (332)
T ss_dssp             CTGGGHHHHHHHHHHTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHSCTTCEEEEECTTCCCH----H
T ss_pred             CChHHHHHHHHHHHHcCCcEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCCEEEEcccCCCCH----H
Confidence            467888888877778899999987652               234555677888888763  5555555555543    3


Q ss_pred             HHHHHHHHHHHc---CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         133 FVRDFVGTVSSA---GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       133 ~~~e~~~~l~~~---G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      +..++++.+++.   ++.+|               ++ ..++-|++..+++++.. .+||.+.=.+.+..++.++++.  
T Consensus       176 ~A~~~~~~l~~~~~~~i~~i---------------Eq-P~~~~d~~~~~~l~~~~-~ipIa~dEs~~~~~~~~~~~~~~a  238 (332)
T 2ozt_A          176 TANRWFAWLDRHGNGKIEYV---------------EQ-PLPPDQWQALLSLAQTV-TTAIALDESVVSAAEVQRWVDRGW  238 (332)
T ss_dssp             HHHHHHHHHHHHCCTTEEEE---------------EC-CSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhccCCccee---------------EC-CCCCCCHHHHHHHHHhC-CCCEEeCCCCCCHHHHHHHHHhCC
Confidence            567899999988   65555               11 11235899999999987 7999998899999999999976  


Q ss_pred             cCEEEEe
Q psy2386         208 IDGVMLG  214 (311)
Q Consensus       208 adgVmig  214 (311)
                      +|.+.+=
T Consensus       239 ~~~i~ik  245 (332)
T 2ozt_A          239 PGFFVIK  245 (332)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            7877764

>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1

Probab=96.81  E-value=0.0082  Score=56.50  Aligned_cols=135  Identities=12%  Similarity=0.179  Sum_probs=95.1

Q ss_pred             CeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          47 PIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      |+-..++ +.+++++.+.++.+.+.||..+-+..| |             ..|.+    .++++++++ ++.+.+...-+
T Consensus       151 ~~~~~~g~~~~~~~~~~~a~~~~~~G~~~~KiKvg-~-------------~~d~~----~v~avr~a~~~~~l~vDaN~~  212 (386)
T 1wue_A          151 PVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVE----PVALIRQHFPNLPLMVDANSA  212 (386)
T ss_dssp             ECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHH----HHHHHHHHCTTSCEEEECTTC
T ss_pred             EeeEEecCCCCHHHHHHHHHHHHHhhhheEEEeeC-c-------------HHHHH----HHHHHHHhCCCCeEEEeCCCC
Confidence            4444454 357999988888777889999998754 2             12333    356666655 45566666666


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      |+..    +. ++++.+++.++.+|-        +        ..++-||+..+++++.. .+||.+.=.+.|..++.++
T Consensus       213 ~~~~----~a-~~~~~l~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~  270 (386)
T 1wue_A          213 YTLA----DL-PQLQRLDHYQLAMIE--------Q--------PFAADDFLDHAQLQREL-KTRICLDENIRSLKDCQVA  270 (386)
T ss_dssp             CCGG----GH-HHHHGGGGSCCSCEE--------C--------CSCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHHHH
T ss_pred             CCHH----HH-HHHHHHHhCCCeEEe--------C--------CCCcccHHHHHHHHHhc-CCCEEeCCccCCHHHHHHH
Confidence            7642    35 788888888888772        1        12235788899999887 7999998899999999999


Q ss_pred             Hhh--cCEEEEehhhhhCC
Q psy2386         205 LNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       205 l~~--adgVmigRa~l~~P  221 (311)
                      ++.  +|.|++==.-.+..
T Consensus       271 i~~~a~d~i~ik~~~~GGi  289 (386)
T 1wue_A          271 LALGSCRSINLKIPRVGGI  289 (386)
T ss_dssp             HHHTCCSEEEECHHHHTSH
T ss_pred             HHcCCCCEEEEchhhhCCH
Confidence            975  99999854444443

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=96.81  E-value=0.0045  Score=52.69  Aligned_cols=69  Identities=10%  Similarity=0.091  Sum_probs=54.8

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      ..-++.+.+...|++-+-+      |.           --+.|+++++.+ ++|||+.|.|+|.+|+.++++. |++|..
T Consensus       117 ~~~~~~i~~~~PD~iEiLP------Gi-----------~p~iI~~i~~~~-~~PiIaGGlI~~~edv~~al~aGA~aVsT  178 (192)
T 3kts_A          117 NKGVALIQKVQPDCIELLP------GI-----------IPEQVQKMTQKL-HIPVIAGGLIETSEQVNQVIASGAIAVTT  178 (192)
T ss_dssp             HHHHHHHHHHCCSEEEEEC------TT-----------CHHHHHHHHHHH-CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred             HHHHHHHhhcCCCEEEECC------ch-----------hHHHHHHHHHhc-CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence            4455666777777775532      21           236899999998 8999999999999999999987 999999


Q ss_pred             ehhhhhCC
Q psy2386         214 GREAYKNP  221 (311)
Q Consensus       214 gRa~l~~P  221 (311)
                      +...+++.
T Consensus       179 s~~~LW~~  186 (192)
T 3kts_A          179 SNKHLWEG  186 (192)
T ss_dssp             CCGGGGTT
T ss_pred             CCHHHhCc
Confidence            98887764

>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae}

Probab=96.79  E-value=0.0081  Score=57.77  Aligned_cols=121  Identities=12%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+...+ .||..+-|..|-+               +++.-.+.++++|+++ ++++.|-..-+|+.    +
T Consensus       190 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~~~~L~vDaN~~w~~----~  250 (445)
T 3va8_A          190 LDPEGVVKQAKKIIDEYGFKAIKLKGGVF---------------PPADEVAAIKALHKAFPGVPLRLDPNAAWTV----E  250 (445)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCH----H
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeeeCCCCCCH----H
Confidence            689999988887654 5999999975532               3444456677788776 45666666666654    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +.+++++.+++. +.+|               |+.   ..+++..+++++.. .+||.+.-.+.+..++.++++.  +|.
T Consensus       251 ~Ai~~~~~L~~~-l~~i---------------EeP---~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~di  310 (445)
T 3va8_A          251 TSKWVAKELEGI-VEYL---------------EDP---AGEIEGMAAVAKEA-SMPLATNMAVVAFDHLPPSILQDAVQV  310 (445)
T ss_dssp             HHHHHHHHTTTT-CSEE---------------ESC---BSHHHHHHHHHTTC-SSCEEESSSCCSGGGHHHHHHTTCCSE
T ss_pred             HHHHHHHHHhhh-cCeE---------------eec---CcCHHHHHHHHHcC-CCCEEeCCccCCHHHHHHHHHcCCCCE
Confidence            567888988887 7666               111   13788889999988 6999998899999999999875  887


Q ss_pred             EEEe
Q psy2386         211 VMLG  214 (311)
Q Consensus       211 Vmig  214 (311)
                      |++=
T Consensus       311 v~~d  314 (445)
T 3va8_A          311 ILSD  314 (445)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            7773

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=96.78  E-value=0.0057  Score=54.63  Aligned_cols=149  Identities=8%  Similarity=0.129  Sum_probs=90.6

Q ss_pred             CCHHHHHHHHHhCCCcEEEecc-eecccccC--Cc-----hhcccc-----CCCCC-CeEEEecCC---CHHHHHHHHHH
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEM-FTTQAILG--NK-----KHCLDF-----NAEEH-PIAFQVGDN---EPKKLAKSAKI   66 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~tem-v~a~~l~~--~~-----~~~l~~-----~~~~~-p~~~Ql~g~---~~~~~~~aa~~   66 (311)
                      =|.++=+++.+-| .+..++.- +.. ..+|  ++     +.++..     ...+. ++++-+---   +|++..+.|.+
T Consensus        25 yD~~sA~l~e~aG-~d~ilvGdsl~~-~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~a~r  102 (264)
T 1m3u_A           25 YDYSFAKLFADEG-LNVMLVGDSLGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAAT  102 (264)
T ss_dssp             CSHHHHHHHHHHT-CCEEEECTTHHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcC-CCEEEECHHHHH-HHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHHHHH
Confidence            3667777777777 45555531 111 1112  11     222211     11233 456555421   78888877777


Q ss_pred             HHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cC----CCCCcHHH
Q psy2386          67 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GI----DDINSYDF  133 (311)
Q Consensus        67 ~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~----~~~~~~~~  133 (311)
                      +.++|+++|.|--|                   +.+.+.|+++.++ ++||.-=+-+         |+    ..+...++
T Consensus       103 l~kaGa~aVklEgg-------------------~e~~~~I~al~~a-gipV~gHiGLtPq~v~~~ggf~v~grt~~~a~~  162 (264)
T 1m3u_A          103 VMRAGANMVKIEGG-------------------EWLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQ  162 (264)
T ss_dssp             HHHTTCSEEECCCS-------------------GGGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHH
T ss_pred             HHHcCCCEEEECCc-------------------HHHHHHHHHHHHC-CCCeEeeecCCceeecccCCeEEEeCCHHHHHH
Confidence            77799999999632                   2345556666554 7888632211         11    11112356


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      +++-++.++++|++.|.+.+-.                  -+.++++.+.+ ++|+|+-|
T Consensus       163 ~i~rA~a~~eAGA~~ivlE~vp------------------~~~a~~it~~l-~iP~igIG  203 (264)
T 1m3u_A          163 LLSDALALEAAGAQLLVLECVP------------------VELAKRITEAL-AIPVIGIG  203 (264)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCC------------------HHHHHHHHHHC-SSCEEEES
T ss_pred             HHHHHHHHHHCCCcEEEEecCC------------------HHHHHHHHHhC-CCCEEEeC
Confidence            7888999999999999997643                  26788999998 79999876

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=96.77  E-value=0.022  Score=50.91  Aligned_cols=96  Identities=11%  Similarity=0.130  Sum_probs=63.2

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +++...+-|+...+.|+|.||||+|            +.....++.+.+++..+++.+++|++|-..-           .
T Consensus        23 ~~~~a~~~a~~~v~~GAdiIDIg~g------------~~~v~~~ee~~rvv~~i~~~~~~pisIDT~~-----------~   79 (262)
T 1f6y_A           23 DPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN-----------I   79 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECSC-----------H
T ss_pred             CHHHHHHHHHHHHHCCCcEEEECCC------------CCCCChHHHHHHHHHHHHHhCCCeEEEeCCC-----------H
Confidence            5666666667677789999999964            3334567888999999988779999986441           3


Q ss_pred             HHHHHHHHc--CCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         136 DFVGTVSSA--GCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       136 e~~~~l~~~--G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      +.++...++  |++.|- |.+-.                -+++.+..+.+.. +.|+++
T Consensus        80 ~v~~aAl~a~~Ga~iINdvs~~~----------------d~~~~~~~~~a~~-~~~vvl  121 (262)
T 1f6y_A           80 KAIEAGLKKCKNRAMINSTNAER----------------EKVEKLFPLAVEH-GAALIG  121 (262)
T ss_dssp             HHHHHHHHHCSSCEEEEEECSCH----------------HHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHhhCCCCCEEEECCCCc----------------ccHHHHHHHHHHh-CCcEEE
Confidence            556666666  887774 44321                1343455555555 677776

>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*

Probab=96.77  E-value=0.011  Score=56.72  Aligned_cols=121  Identities=9%  Similarity=0.152  Sum_probs=89.8

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+...+ .||..|-|..|-.               +++.-.+.++++|+++ ++++.|-..-+|+.    +
T Consensus       192 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~~d~~L~vDaN~~w~~----~  252 (445)
T 3vdg_A          192 LDPDGIVAQARRMIDEYGFSAIKLKGGVF---------------APEEEMAAVEALRAAFPDHPLRLDPNAAWTP----Q  252 (445)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHCTTSCEEEECTTCSCH----H
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCcEEEECCCCCCH----H
Confidence            689999998887654 5999999975532               3444456677787776 55677766667764    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +.+++++.+++. +.+|               |+.   ..+++..+++++.. .+||.+.-.+.+..++.++++.  +|.
T Consensus       253 ~Ai~~~~~L~~~-l~~i---------------EeP---~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~di  312 (445)
T 3vdg_A          253 TSVKVAAGLEGV-LEYL---------------EDP---TPGLDGMAEVAAQA-PMPLATNMCVVAFDQLPAAVAKNSVQV  312 (445)
T ss_dssp             HHHHHHHHTTTT-CSEE---------------ECC---SSSHHHHHHHHHHC-SSCEEESSSCCSGGGHHHHHHHTCCSE
T ss_pred             HHHHHHHHHhhH-HHee---------------eCC---CCCHHHHHHHHhcC-CCCEEcCCcCCCHHHHHHHHHcCCCCE
Confidence            567889999887 7666               111   13788899999998 6999998899999999998865  887


Q ss_pred             EEEe
Q psy2386         211 VMLG  214 (311)
Q Consensus       211 Vmig  214 (311)
                      |++=
T Consensus       313 v~~d  316 (445)
T 3vdg_A          313 VLSD  316 (445)
T ss_dssp             EEEC
T ss_pred             EeeC
Confidence            7763

>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A

Probab=96.76  E-value=0.012  Score=56.05  Aligned_cols=124  Identities=10%  Similarity=0.072  Sum_probs=91.4

Q ss_pred             cCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCc
Q psy2386          53 GDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINS  130 (311)
Q Consensus        53 ~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~  130 (311)
                      ...+++.+++.++...+.||..+-+..|-.                ++...+.++++|+++  ++.+.|-..-+|+.   
T Consensus       185 ~~~~~~~~~~~a~~~~~~G~~~~K~k~g~~----------------~~~~~~~v~~vR~~~g~~~~l~vDaN~~~~~---  245 (412)
T 4h1z_A          185 PEDTRAKRAELAAAWQAKGFSSFKFASPVA----------------DDGVAKEMEILRERLGPAVRIACDMHWAHTA---  245 (412)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCEEEEEGGGC----------------TTCHHHHHHHHHHHHCSSSEEEEECCSCCCH---
T ss_pred             CCCcHHHHHHHHHHHHhcCcceeccccccc----------------hhhHHHHHHHHHhccCCeEEEEeccccCCCH---
Confidence            345789999999888889999998864321                122334466777766  45666666666653   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--c
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--I  208 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--a  208 (311)
                       ++..++++.+++.|+.++-               + ..++-|++..+++++.. ++||.+.=.+.|..|+.++++.  +
T Consensus       246 -~~A~~~~~~l~~~~l~~iE---------------q-P~~~~d~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~a~  307 (412)
T 4h1z_A          246 -SEAVALIKAMEPHGLWFAE---------------A-PVRTEDIDGLARVAASV-STAIAVGEEWRTVHDMVPRVARRAL  307 (412)
T ss_dssp             -HHHHHHHHHHGGGCEEEEE---------------C-CSCTTCHHHHHHHHHHC-SSEEEECTTCCSHHHHHHHHHTTCC
T ss_pred             -HHHHHHHHhhcccccceec---------------C-CCCccchHHHHHHHhhc-CCccccCCcccchHhHHHHHHcCCC
Confidence             3568899999999877661               1 12335889999999998 7999998899999999999975  8


Q ss_pred             CEEEE
Q psy2386         209 DGVML  213 (311)
Q Consensus       209 dgVmi  213 (311)
                      |.|++
T Consensus       308 div~~  312 (412)
T 4h1z_A          308 AIVQP  312 (412)
T ss_dssp             SEECC
T ss_pred             CEEEe
Confidence            88775

>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}

Probab=96.76  E-value=0.02  Score=53.93  Aligned_cols=139  Identities=12%  Similarity=0.144  Sum_probs=99.2

Q ss_pred             CCCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEE
Q psy2386          44 EEHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKi  121 (311)
                      +..|+-..++..+ |+.+++.++...+.||..+-+..| |             -.|.+    .++++|+.+ ++.+.|-.
T Consensus       136 ~~v~~~~~~~~~~~~e~~~~~~~~~~~~G~~~~K~Kv~-~-------------~~d~~----~v~avR~~~~~~~l~vDa  197 (388)
T 3qld_A          136 DRVEVSATLGMSESLDVLIQSVDAAVEQGFRRVKLKIA-P-------------GRDRA----AIKAVRLRYPDLAIAADA  197 (388)
T ss_dssp             SEEEBEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECB-T-------------TBSHH----HHHHHHHHCTTSEEEEEC
T ss_pred             CeEEEeEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC-c-------------HHHHH----HHHHHHHHCCCCeEEEEC
Confidence            3445666776555 999999998888889999999764 1             13444    455666655 45666666


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..+    ... ++.+++.++.+|-               + ..++.|++..+++++.. .+||.+.=.+.+..|+
T Consensus       198 N~~~~~~~----A~~-~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~  255 (388)
T 3qld_A          198 NGSYRPED----APV-LRQLDAYDLQFIE---------------Q-PLPEDDWFDLAKLQASL-RTPVCLDESVRSVREL  255 (388)
T ss_dssp             TTCCCGGG----HHH-HHHGGGGCCSCEE---------------C-CSCTTCHHHHHHHHHHC-SSCEEESTTCCSHHHH
T ss_pred             CCCCChHH----HHH-HHHHhhCCCcEEE---------------C-CCCcccHHHHHHHHHhC-CCCEEeCCCCCCHHHH
Confidence            66776543    344 7888888877761               1 12335788899999998 7999998899999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCc
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~  222 (311)
                      .++++.  +|.|++==+-.+...
T Consensus       256 ~~~~~~~a~d~v~~k~~~~GGit  278 (388)
T 3qld_A          256 KLTARLGAARVLNVKPGRLGGFG  278 (388)
T ss_dssp             HHHHHHTCCSEEEECHHHHTSHH
T ss_pred             HHHHHcCCCCEEEECchhhCCHH
Confidence            999975  999998655544443

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=96.72  E-value=0.059  Score=47.01  Aligned_cols=120  Identities=13%  Similarity=0.079  Sum_probs=80.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc-HHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS-YDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~  134 (311)
                      +++.+.+.|+-+++.|+.+|..+                   .    .+-++++|+.+++||.-..|..+.+.+- ....
T Consensus        34 ~~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~   90 (229)
T 3q58_A           34 KPEIVAAMAQAAASAGAVAVRIE-------------------G----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPY   90 (229)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCS
T ss_pred             CcchHHHHHHHHHHCCCcEEEEC-------------------C----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCcc
Confidence            38899999999999999999873                   1    2457889999999986444432211000 0001


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+-+..+.++|+|.|.+.....    .+       +....++++++++.  ++++++  ++.|.+++.++.+. +|.|.+
T Consensus        91 ~~~i~~~~~aGad~I~l~~~~~----~~-------p~~l~~~i~~~~~~--g~~v~~--~v~t~eea~~a~~~Gad~Ig~  155 (229)
T 3q58_A           91 LQDVDALAQAGADIIAFDASFR----SR-------PVDIDSLLTRIRLH--GLLAMA--DCSTVNEGISCHQKGIEFIGT  155 (229)
T ss_dssp             HHHHHHHHHHTCSEEEEECCSS----CC-------SSCHHHHHHHHHHT--TCEEEE--ECSSHHHHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHHcCCCEEEECcccc----CC-------hHHHHHHHHHHHHC--CCEEEE--ecCCHHHHHHHHhCCCCEEEe
Confidence            3446778899999998754321    00       11234667777663  577665  79999999998876 998864

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=96.65  E-value=0.12  Score=46.96  Aligned_cols=143  Identities=14%  Similarity=0.232  Sum_probs=84.8

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce----eEE
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID----ITV  119 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p----vsv  119 (311)
                      +.+++.=+-=.| |+..+.+++.+.++|+|.|.+|..           |+     ++-+...+++.++.-..|    |++
T Consensus        76 g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTVHa~-----------~G-----~~~m~aa~e~a~~~~~~~~llaVtv  139 (303)
T 3ru6_A           76 DFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHAS-----------AG-----KIAIQEVMTRLSKFSKRPLVLAVSA  139 (303)
T ss_dssp             CCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG-----------GC-----HHHHHHHHHHHTTSSSCCEEEEECS
T ss_pred             CCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEEecc-----------CC-----HHHHHHHHHHHHhcCCCceEEEEEE
Confidence            456666555443 677777788888899999999932           11     344455555554432222    222


Q ss_pred             EEeccCC------CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         120 KHRIGID------DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       120 KiR~g~~------~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      ....+..      +.+..+....+++...++|++.+++.+.                  .   +.++++.+++-.++..+
T Consensus       140 LTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~s~~------------------E---~~~IR~~~~~~fl~VTP  198 (303)
T 3ru6_A          140 LTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVF------------------E---SKKIKEHTSSNFLTLTP  198 (303)
T ss_dssp             CTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEECCTT------------------T---HHHHHHHSCTTSEEEEC
T ss_pred             ecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEECHH------------------H---HHHHHHhCCCccEEECC
Confidence            2221100      0111123456777888899999876322                  1   45677776555688888


Q ss_pred             CCCCHH----------HHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         194 GIKTKK----------EIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       194 gI~s~~----------da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      ||+-..          .+.++++. +|.+.+||+++..+...
T Consensus       199 GIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~  240 (303)
T 3ru6_A          199 GIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPR  240 (303)
T ss_dssp             CCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHH
T ss_pred             CcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHH
Confidence            887211          23344444 99999999999866543

>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}

Probab=96.59  E-value=0.042  Score=51.32  Aligned_cols=132  Identities=12%  Similarity=0.096  Sum_probs=94.0

Q ss_pred             CCeEEEecC--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          46 HPIAFQVGD--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        46 ~p~~~Ql~g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      .|+-..++.  .+++++.+.++.+.+.||..+-+..|-                +++.-.+.++++++++  ++.+.|..
T Consensus       132 vp~~~~~g~~~~~~~~~~~~a~~~~~~G~~~~KiKvG~----------------~~~~d~~~v~avr~a~g~~~~l~vDa  195 (372)
T 3cyj_A          132 VPVYGSGGFTSYPLRRLQEQLGGWAAAGIPRVKMKVGR----------------EPEKDPERVRAAREAIGESVELMVDA  195 (372)
T ss_dssp             EEEEEECCCTTSCHHHHHHHHHHHHHTTCCEEEEECCS----------------SGGGHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             ceEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCC----------------CHHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            344444322  256778777777777899999986441                4454566777777776  45666666


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~~  199 (311)
                      .-+|+.    ++..++++.+++. ++.+|-        +        ..++-||+..+++++..+. +||.+.=-+.|..
T Consensus       196 N~~~~~----~~a~~~~~~l~~~~~i~~iE--------q--------P~~~~d~~~~~~l~~~~~~~ipIa~dE~~~~~~  255 (372)
T 3cyj_A          196 NGAYTR----KQALYWAGAFAREAGISYLE--------E--------PVSSEDREGLRLLRDRGPGGVAIAAGEYEWTLP  255 (372)
T ss_dssp             TTCSCH----HHHHHHHHHHHHHHCCCEEE--------C--------SSCTTCHHHHHHHHHHSCTTCEEEECTTCCSHH
T ss_pred             CCCCCH----HHHHHHHHHHHhhcCCcEEE--------C--------CCCcccHHHHHHHHHhCCCCCCEECCCCccCHH
Confidence            656653    3578899999998 888771        1        1123489999999998732 7999988999999


Q ss_pred             HHHHHHhh-cCEEEEe
Q psy2386         200 EIDLHLNY-IDGVMLG  214 (311)
Q Consensus       200 da~~~l~~-adgVmig  214 (311)
                      ++.++ .. +|.|++=
T Consensus       256 ~~~~~-~~a~d~i~ik  270 (372)
T 3cyj_A          256 QLHDL-AGCVDILQAD  270 (372)
T ss_dssp             HHHHH-HTTCSEEEEC
T ss_pred             HHHHH-hCCCCEEecC
Confidence            99998 65 9999983

>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A

Probab=96.57  E-value=0.017  Score=55.49  Aligned_cols=120  Identities=12%  Similarity=0.222  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+...+ .||..+-|..|-.               +++.-.+.++++|+++ ++++.|-..-+|+.    +
T Consensus       187 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~----~  247 (441)
T 3vc5_A          187 LDPDGIVAQARLLIGEYGFRSIKLKGGVF---------------PPEQEAEAIQALRDAFPGLPLRLDPNAAWTV----E  247 (441)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSSEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCSCH----H
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEccCCC---------------CHHHHHHHHHHHHHhCCCCcEeccCCCCCCH----H
Confidence            689999998887654 6999999975532               3344456677788776 45666766666764    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +.+++++.+++. +.+|               |+.   ..+++..+++++.. .+||.+.=.+.+..++.++++.  +|.
T Consensus       248 ~Ai~~~~~L~~~-l~~i---------------EeP---~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~~a~di  307 (441)
T 3vc5_A          248 TSIRVGRALDGV-LEYL---------------EDP---TPGIDGMARVAAEV-PMPLATNMCVVTPEHLPAAVERRPIGV  307 (441)
T ss_dssp             HHHHHHHHTTTT-CSEE---------------ECC---SSSHHHHHHHHTTS-SSCEEESSSCCSGGGHHHHHHHCCCSE
T ss_pred             HHHHHHHHHHHH-HHHh---------------hcc---CCCHHHHHHHHhcC-CCCEEeCCCCCCHHHHHHHHHhCCCCE
Confidence            567888888887 7666               111   13788889999887 6999888788999999988864  777


Q ss_pred             EEE
Q psy2386         211 VML  213 (311)
Q Consensus       211 Vmi  213 (311)
                      |++
T Consensus       308 i~~  310 (441)
T 3vc5_A          308 LLI  310 (441)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            776

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=96.57  E-value=0.13  Score=44.80  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             CeEEEecCCC------HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          47 PIAFQVGDNE------PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        47 p~~~Ql~g~~------~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      .+||+.-+..      ++.+.+.|+-+++.|+.+|..|                   .    .+.++++++.+++||.-.
T Consensus        19 ~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~-------------------~----~~~i~~ir~~v~~Pvig~   75 (232)
T 3igs_A           19 GLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIE-------------------G----IDNLRMTRSLVSVPIIGI   75 (232)
T ss_dssp             CEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEE-------------------S----HHHHHHHHTTCCSCEEEE
T ss_pred             CEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEEC-------------------C----HHHHHHHHHhcCCCEEEE
Confidence            3555444443      8899999999999999999873                   1    245788899999998433


Q ss_pred             EeccCCCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         121 HRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       121 iR~g~~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      .|..+.+.+- .....+-+..+.++|+|.|.+-....    .+       +....++++++++.  ++++++  ++.|.+
T Consensus        76 ~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~----~~-------p~~l~~~i~~~~~~--g~~v~~--~v~t~e  140 (232)
T 3igs_A           76 IKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTAR----QR-------PVAVEALLARIHHH--HLLTMA--DCSSVD  140 (232)
T ss_dssp             CBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSS----CC-------SSCHHHHHHHHHHT--TCEEEE--ECCSHH
T ss_pred             EeecCCCcceEeCccHHHHHHHHHcCCCEEEECcccc----CC-------HHHHHHHHHHHHHC--CCEEEE--eCCCHH
Confidence            3432111000 00013446778899999998754321    00       11234667777653  577665  799999


Q ss_pred             HHHHHHhh-cCEEEE
Q psy2386         200 EIDLHLNY-IDGVML  213 (311)
Q Consensus       200 da~~~l~~-adgVmi  213 (311)
                      ++.++.+. +|.|.+
T Consensus       141 ea~~a~~~Gad~Ig~  155 (232)
T 3igs_A          141 DGLACQRLGADIIGT  155 (232)
T ss_dssp             HHHHHHHTTCSEEEC
T ss_pred             HHHHHHhCCCCEEEE
Confidence            99998876 998864

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.55  E-value=0.0083  Score=53.92  Aligned_cols=76  Identities=9%  Similarity=0.080  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+++.|+++|.|..-..+++|            ..+.+.++++.+ ++||+..+.|.++.++.+..+. ||+|.
T Consensus        74 p~~~A~~y~~~GA~~isvltd~~~f~G------------s~~~l~~ir~~v-~lPvl~kdfiid~~qv~~A~~~GAD~Vl  140 (272)
T 3qja_A           74 PAKLAQAYQDGGARIVSVVTEQRRFQG------------SLDDLDAVRASV-SIPVLRKDFVVQPYQIHEARAHGADMLL  140 (272)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCGGGHHH------------HHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHcCCCEEEEecChhhcCC------------CHHHHHHHHHhC-CCCEEECccccCHHHHHHHHHcCCCEEE
Confidence            578999999999999998755443444            467889999988 8999999999999999988876 99999


Q ss_pred             EehhhhhCCc
Q psy2386         213 LGREAYKNPF  222 (311)
Q Consensus       213 igRa~l~~P~  222 (311)
                      ++-+.+.+..
T Consensus       141 Li~a~l~~~~  150 (272)
T 3qja_A          141 LIVAALEQSV  150 (272)
T ss_dssp             EEGGGSCHHH
T ss_pred             EecccCCHHH
Confidence            9988776443

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=96.52  E-value=0.14  Score=45.92  Aligned_cols=98  Identities=11%  Similarity=0.098  Sum_probs=73.2

Q ss_pred             CCC-eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEe
Q psy2386          45 EHP-IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR  122 (311)
Q Consensus        45 ~~p-~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR  122 (311)
                      ++| +.+.|.+.+.+++...++.+...|+|.||+=.-+=         ..  ..+.+.+.+.++.+|+.+ ++|+.+=+|
T Consensus        38 g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l---------~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~R  106 (276)
T 3o1n_A           38 GAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHF---------AN--VTTAESVLEAAGAIREIITDKPLLFTFR  106 (276)
T ss_dssp             SSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGC---------TT--TTCHHHHHHHHHHHHHHCCSSCEEEECC
T ss_pred             CCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccc---------cc--cCcHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            344 78999999999999999888878999999953221         00  123477889999999887 799999999


Q ss_pred             ccCCCC---CcHHHHHHHHHHHHHcC-CCEEEEec
Q psy2386         123 IGIDDI---NSYDFVRDFVGTVSSAG-CRTFIVHA  153 (311)
Q Consensus       123 ~g~~~~---~~~~~~~e~~~~l~~~G-~~~itvh~  153 (311)
                      .-++.+   .+.+...++.+.+.+.| +++|.|--
T Consensus       107 t~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl  141 (276)
T 3o1n_A          107 SAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLEL  141 (276)
T ss_dssp             BGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEG
T ss_pred             EhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            744322   12335678888888999 99999863

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.52  E-value=0.0097  Score=53.48  Aligned_cols=74  Identities=7%  Similarity=0.078  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+++.|+++|.|-.-..+++|            ..+.+.++++.+ ++||+..+.|.++.++.+.... ||+|.
T Consensus        81 p~~~A~~y~~~GA~~IsVltd~~~f~G------------s~~~L~~ir~~v-~lPVl~Kdfi~d~~qi~ea~~~GAD~Vl  147 (272)
T 3tsm_A           81 PPALAKAYEEGGAACLSVLTDTPSFQG------------APEFLTAARQAC-SLPALRKDFLFDPYQVYEARSWGADCIL  147 (272)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCSTTTCC------------CHHHHHHHHHTS-SSCEEEESCCCSTHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEeccccccCC------------CHHHHHHHHHhc-CCCEEECCccCCHHHHHHHHHcCCCEEE
Confidence            578999999999999988643332333            567889999988 8999999999999999998876 99999


Q ss_pred             EehhhhhC
Q psy2386         213 LGREAYKN  220 (311)
Q Consensus       213 igRa~l~~  220 (311)
                      ++-+++.+
T Consensus       148 Li~a~L~~  155 (272)
T 3tsm_A          148 IIMASVDD  155 (272)
T ss_dssp             EETTTSCH
T ss_pred             EcccccCH
Confidence            99887753

>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A

Probab=96.51  E-value=0.026  Score=52.76  Aligned_cols=121  Identities=9%  Similarity=0.043  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      +++.++.++...+.||..+-+..|-                +++.-.+.++++|+++  ++.+.|-..-+|+.    ++.
T Consensus       145 ~~~~~~~~~~~~~~Gf~~~K~k~g~----------------~~~~di~~v~avr~~~g~~~~l~vDaN~~~~~----~~A  204 (378)
T 4hpn_A          145 VSDNASEMAERRAEGFHACKIKIGF----------------GVEEDLRVIAAVREAIGPDMRLMIDANHGYTV----TEA  204 (378)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCS----------------CHHHHHHHHHHHHHHHTTTSEEEEECTTCCCH----HHH
T ss_pred             HHHHHHHHHHHHHhccceecccccC----------------ChHHHHHHHHHHHHhcCCcEEEEEecCcccCH----HHH
Confidence            3444444444456799999887542                3455556788888876  46666666666753    356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVm  212 (311)
                      .++++.+++.|+.+|-               + ..++-|++..+++++.. ++||.+.-.+.|..|+.++++.  +|.|+
T Consensus       205 ~~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~i~~~a~d~i~  267 (378)
T 4hpn_A          205 ITLGDRAAGFGIDWFE---------------E-PVVPEQLDAYARVRAGQ-PIPVAGGETWHGRYGMWQALSAGAVDILQ  267 (378)
T ss_dssp             HHHHHHHGGGCCSCEE---------------C-CSCTTCHHHHHHHHHHS-SSCEEECTTCCHHHHHHHHHHTTCCSEEC
T ss_pred             HHHHhhhhhcccchhh---------------c-CCCccchhhhHHHHhhC-CceeeCCcCccchHhHHHHHHcCCCCEEe
Confidence            8899999999988771               1 12335899999999998 7999998899999999999975  99887


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +=
T Consensus       268 ~d  269 (378)
T 4hpn_A          268 PD  269 (378)
T ss_dssp             CB
T ss_pred             eC
Confidence            64

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=96.51  E-value=0.03  Score=48.50  Aligned_cols=138  Identities=12%  Similarity=0.183  Sum_probs=87.0

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.+++.=+-=.| |+..+.+++.+.++ +|.+.+|.....         ...++   -+    +   .  +.-|++=++.
T Consensus        50 g~~VflDlK~~DIpnTv~~a~~~~~~~-ad~vTvh~~~G~---------~~~~~---~~----~---~--~~~v~vLts~  107 (215)
T 3ve9_A           50 DGIKILDLKLADIDNTMILIVDELKDI-TNSFIAHAFVGV---------EGSLA---SL----S---Q--RVDLFLVLSM  107 (215)
T ss_dssp             CSEEEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEGGGCT---------TTTHH---HH----H---H--HSEEEEECCC
T ss_pred             CCcEEEEecccCchhHHHHHHHHHHHh-hheEEEeCCCCc---------HHHHH---hH----h---c--CCCEEEEEec
Confidence            567777766444 77778788888889 999999943320         11111   01    1   1  1224444443


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~  202 (311)
                      ...+.. .+....+++...++|++.+++.+.                  ..+.++++++.+++ .++..+||+.. .+..
T Consensus       108 s~~~~~-~~~v~~~a~~a~~~G~~GvV~sat------------------~~~e~~~ir~~~~~-f~~v~pGI~~~g~~~~  167 (215)
T 3ve9_A          108 SHPGWN-DAFYPYLREVARRVNPKGFVAPAT------------------RPSMISRVKGDFPD-KLVISPGVGTQGAKPG  167 (215)
T ss_dssp             SSTTCC-GGGHHHHHHHHHHHCCSEEECCTT------------------SHHHHHHHHHHCTT-SEEEECCTTSTTCCTT
T ss_pred             CCcchH-HHHHHHHHHHHHHcCCCceeeCCC------------------CHHHHHHHHHhCCC-cEEEcCCCCcCcCCHH
Confidence            222110 123567888889999999877543                  23567788888877 78888999742 1444


Q ss_pred             HHHhh-cCEEEEehhhhhCCcch
Q psy2386         203 LHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       203 ~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      +.++. +|.+.+||+++..+...
T Consensus       168 ~a~~~Gad~iVvGr~I~~a~dp~  190 (215)
T 3ve9_A          168 IALCHGADYEIVGRSVYQSADPV  190 (215)
T ss_dssp             HHHHTTCSEEEECHHHHTSSSHH
T ss_pred             HHHHcCCCEEEeCHHHcCCCCHH
Confidence            55554 99999999998755443

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=96.48  E-value=0.075  Score=46.30  Aligned_cols=142  Identities=12%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      .+++.=+- ...|+....+++.+.++|+|.|.+|.-+.                ++-+...++.+++. +.-|++=....
T Consensus        65 ~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~~~G----------------~~~l~~~~~~~~~~-g~~v~vLt~~s  127 (228)
T 3m47_A           65 CRIIADFKVADIPETNEKICRATFKAGADAIIVHGFPG----------------ADSVRACLNVAEEM-GREVFLLTEMS  127 (228)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC----------------HHHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred             CeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEeccCC----------------HHHHHHHHHHHHhc-CCCeEEEEeCC
Confidence            45554443 35577777788888889999999994321                23344555555432 33355422221


Q ss_pred             CCC-CCcH-HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEEEecCCCCH-HH
Q psy2386         125 IDD-INSY-DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEIIINGGIKTK-KE  200 (311)
Q Consensus       125 ~~~-~~~~-~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi~nGgI~s~-~d  200 (311)
                      ... .+.. +....+++...+.|++.+.+.+..                  -+.++++++.+++ .++ ..+||... .+
T Consensus       128 ~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~------------------~~e~~~ir~~~~~~~~i-v~PGI~~~g~~  188 (228)
T 3m47_A          128 HPGAEMFIQGAADEIARMGVDLGVKNYVGPSTR------------------PERLSRLREIIGQDSFL-ISPGVGAQGGD  188 (228)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSC------------------HHHHHHHHHHHCSSSEE-EECC-------
T ss_pred             CccHHHHHHHHHHHHHHHHHHhCCcEEEECCCC------------------hHHHHHHHHhcCCCCEE-EecCcCcCCCC
Confidence            111 0111 123467778889999998764421                  2456777776643 555 66777532 14


Q ss_pred             HHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         201 IDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       201 a~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      . +.++. +|.+.+||+++..+...
T Consensus       189 p-~~~~aGad~iVvGr~I~~a~dp~  212 (228)
T 3m47_A          189 P-GETLRFADAIIVGRSIYLADNPA  212 (228)
T ss_dssp             ---CGGGTCSEEEECHHHHTSSCHH
T ss_pred             H-hHHHcCCCEEEECHHHhCCCCHH
Confidence            5 55554 99999999998755443

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=96.46  E-value=0.12  Score=46.09  Aligned_cols=97  Identities=11%  Similarity=-0.006  Sum_probs=65.8

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~  127 (311)
                      ++-+...|.-    .|++++++|+|.|=+  |-...++ .-|+-+.+.-..+.+...+++|++.++.| |.+-+-.|-. 
T Consensus        19 i~~~tayD~~----sA~l~e~aG~d~ilv--Gdsl~~~-~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy-   90 (264)
T 1m3u_A           19 FATITAYDYS----FAKLFADEGLNVMLV--GDSLGMT-VQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAY-   90 (264)
T ss_dssp             EEEEECCSHH----HHHHHHHHTCCEEEE--CTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSS-
T ss_pred             EEEEeCcCHH----HHHHHHHcCCCEEEE--CHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCc-
Confidence            3446666654    578888999999966  5544443 23455556666777788888888888754 5555444322 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      . +.+...+.+.++.++|+++|.+-+.
T Consensus        91 ~-~~~~a~~~a~rl~kaGa~aVklEgg  116 (264)
T 1m3u_A           91 A-TPEQAFENAATVMRAGANMVKIEGG  116 (264)
T ss_dssp             S-SHHHHHHHHHHHHHTTCSEEECCCS
T ss_pred             C-CHHHHHHHHHHHHHcCCCEEEECCc
Confidence            2 4456677788899999999998765

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=96.42  E-value=0.16  Score=45.46  Aligned_cols=119  Identities=10%  Similarity=-0.059  Sum_probs=78.0

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      +.| ++-+...|.-    .|++++++|+|.| +- |--...+ .-|+-..+.-..+.+...+++|++.+ ..||.+-+-.
T Consensus        28 g~~-i~m~tayDa~----sA~l~e~aG~d~i-lv-GdSl~~~-~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pf   99 (275)
T 3vav_A           28 GEK-IAMLTCYDAS----FAALLDRANVDVQ-LI-GDSLGNV-LQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPF   99 (275)
T ss_dssp             TCC-EEEEECCSHH----HHHHHHHTTCSEE-EE-CTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCT
T ss_pred             CCc-EEEEeCcCHH----HHHHHHHcCCCEE-EE-CcHHHHH-HcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCC
Confidence            344 3455666654    5788899999999 42 3222222 22344444555677777778888877 4899999998


Q ss_pred             c-CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         124 G-IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       124 g-~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      | + . + .++..+.+.++.++|+++|.+-+...                -.+.|+.+.+.  .|||.+.
T Consensus       100 gsY-~-s-~~~a~~~a~rl~kaGa~aVklEdg~~----------------~~~~i~~l~~~--GIpv~gH  148 (275)
T 3vav_A          100 GTY-G-T-PADAFASAVKLMRAGAQMVKFEGGEW----------------LAETVRFLVER--AVPVCAH  148 (275)
T ss_dssp             TSC-S-S-HHHHHHHHHHHHHTTCSEEEEECCGG----------------GHHHHHHHHHT--TCCEEEE
T ss_pred             CCC-C-C-HHHHHHHHHHHHHcCCCEEEECCchh----------------HHHHHHHHHHC--CCCEEEe
Confidence            5 5 2 2 33567778888888999999876531                23567777764  5777764

>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*

Probab=96.41  E-value=0.034  Score=52.08  Aligned_cols=131  Identities=13%  Similarity=0.180  Sum_probs=93.1

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKi  121 (311)
                      ..|+-..++..+++++++.++...+.||..+-+..|..               +++.-.+.++++++++   ++.+.|-.
T Consensus       139 ~v~~y~s~~~~~~~~~~~~a~~~~~~G~~~~KiKvg~~---------------~~~~di~~v~~vr~a~~g~~~~l~vDa  203 (376)
T 4h2h_A          139 SVSSYYSLGVMEPDEAARQALEKQREGYSRLQVKLGAR---------------PIEIDIEAIRKVWEAVRGTGIALAADG  203 (376)
T ss_dssp             EEECEEEECSCCHHHHHHHHHHHHHHTCSEEEEECCSS---------------CHHHHHHHHHHHHHHHTTSCCEEEEEC
T ss_pred             ceeEeeecccCCHHHHHHHHHHHHhcCceEEEEecCCC---------------CHHHHHHHHHHHHhhccCCeeEEEEee
Confidence            45677888889999999888888888999999976532               1222234555666544   45666666


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++...+++.+++.+. ++               ++   |..+++..+++++.. ++||.+-=.+.+..|+
T Consensus       204 N~~~~~----~~A~~~~~~l~~~~~-~i---------------Ee---P~~~~~~~~~l~~~~-~~pia~dE~~~~~~~~  259 (376)
T 4h2h_A          204 NRGWTT----RDALRFSRECPDIPF-VM---------------EQ---PCNSFEDLEAIRPLC-HHALYMDEDGTSLNTV  259 (376)
T ss_dssp             TTCCCH----HHHHHHHHHCTTSCE-EE---------------ES---CSSSHHHHHHHGGGC-CSCEEESTTCCSHHHH
T ss_pred             ccCCCH----HHHHHHHHHHhhccc-cc---------------cC---CcchhhhHhhhhhcc-cCccccCcccCCHHHH
Confidence            666653    356778887776653 22               11   113678888999987 7999888899999999


Q ss_pred             HHHHhh--cCEEEEe
Q psy2386         202 DLHLNY--IDGVMLG  214 (311)
Q Consensus       202 ~~~l~~--adgVmig  214 (311)
                      .++++.  +|.|++=
T Consensus       260 ~~~~~~~~~d~v~~d  274 (376)
T 4h2h_A          260 ITAAATSLVDGFGMK  274 (376)
T ss_dssp             HHHHHTTCCSEECCB
T ss_pred             HHHHHhhccCccccc
Confidence            999975  8988774

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=96.40  E-value=0.072  Score=46.49  Aligned_cols=134  Identities=10%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+.++.++- ++++.   ++.+++.+.|.|.||             |   -.+|+.+    +.+++..++||.=-+|+..
T Consensus        71 ~~~~v~v~v-~~~ei---~~~i~~~~ld~vQLH-------------G---~E~~~~~----~~l~~~~~~~viKa~~v~~  126 (228)
T 4aaj_A           71 PVFLVSTMV-GFSEW---AMAIERTGAQYIQVH-------------S---NALPQTI----DTLKKEFGVFVMKAFRVPT  126 (228)
T ss_dssp             CEEEEECCC-CHHHH---HHHHHHHTCSEEEEC-------------S---CCCHHHH----HHHHHHHCCEEEEEEECCS
T ss_pred             CCEEEeccC-chHHH---HHHHHhccchheecc-------------c---ccCHHHH----HHHhhccCceEEEEEEecc
Confidence            345666654 46554   445667889999998             1   1345554    4455556778754466643


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l  205 (311)
                      ......++...+...+....+|++.+...     |-+|+      ..||+++..+...   .|++..||++ ++.+.+++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~d~~LlDs~-----GGtG~------~fDW~~~~~~~~~---~p~iLAGGL~-peNV~~Ai  191 (228)
T 4aaj_A          127 ISKNPEEDANRLLSEISRYNADMVLLDTG-----AGSGK------LHDLRVSSLVARK---IPVIVAGGLN-AENVEEVI  191 (228)
T ss_dssp             SCSCHHHHHHHHHHHHHHSCCSEEEEEC------------------CCCHHHHHHHHH---SCEEEESSCC-TTTHHHHH
T ss_pred             cccchhhhHHHHHHHHhccCCCEEccCCC-----CCCcC------cCChHHHHHhhhc---CCeEEECCCC-HHHHHHHH
Confidence            33322223344555666778999988632     22232      3699998887664   6899999995 67777777


Q ss_pred             hh--cCEEEEehhhh
Q psy2386         206 NY--IDGVMLGREAY  218 (311)
Q Consensus       206 ~~--adgVmigRa~l  218 (311)
                      +.  ..||=+.+|.=
T Consensus       192 ~~~~P~gVDVsSGVE  206 (228)
T 4aaj_A          192 KVVKPYGVDVSSGVE  206 (228)
T ss_dssp             HHHCCSEEEESGGGE
T ss_pred             HHhCCCEEEeCCCCC
Confidence            64  88999988874

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=96.36  E-value=0.11  Score=46.50  Aligned_cols=97  Identities=11%  Similarity=0.016  Sum_probs=64.9

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~~  128 (311)
                      +-+...|.-    .|++++++|+|.| + .|--..++ .-|+-..+.-..+.+...+++|++.++.| |.+-+-.|-. .
T Consensus        20 ~~~tayDa~----sA~l~e~aG~d~i-l-vGdSl~~~-~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy-~   91 (275)
T 1o66_A           20 AMLTAYESS----FAALMDDAGVEML-L-VGDSLGMA-VQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAY-Q   91 (275)
T ss_dssp             EEEECCSHH----HHHHHHHTTCCEE-E-ECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSS-S
T ss_pred             EEEeCcCHH----HHHHHHHcCCCEE-E-ECHHHHHH-HcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCc-c
Confidence            446666654    5788889999999 4 35444433 23455556667788888888888888754 5555443221 1


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      .+.+...+-+.++.++|+++|.+-+.
T Consensus        92 ~s~~~a~~na~rl~kaGa~aVklEdg  117 (275)
T 1o66_A           92 QSKEQAFAAAAELMAAGAHMVKLEGG  117 (275)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECCc
Confidence            23445677778888999999998765

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=96.36  E-value=0.022  Score=51.06  Aligned_cols=111  Identities=12%  Similarity=0.179  Sum_probs=76.2

Q ss_pred             CCCCeEEEec-C--CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          44 EEHPIAFQVG-D--NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~-g--~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ...|+++-+= |  .+|++..+.|.++.+.|+++|.|--|                   ....+.++++++. ++||.--
T Consensus        89 ~~~~vvaD~pfgsY~s~~~a~~~a~rl~kaGa~aVklEdg-------------------~~~~~~i~~l~~~-GIpv~gH  148 (275)
T 3vav_A           89 PRALIVADLPFGTYGTPADAFASAVKLMRAGAQMVKFEGG-------------------EWLAETVRFLVER-AVPVCAH  148 (275)
T ss_dssp             CSSEEEEECCTTSCSSHHHHHHHHHHHHHTTCSEEEEECC-------------------GGGHHHHHHHHHT-TCCEEEE
T ss_pred             CCCCEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEECCc-------------------hhHHHHHHHHHHC-CCCEEEe
Confidence            3467888774 3  48888887777776679999999622                   1235566666653 7888643


Q ss_pred             Eec---------cC----CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         121 HRI---------GI----DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       121 iR~---------g~----~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      +.+         |+    ..+...+++++-++.++++|++.|.+.+-.                 + +.+++|.+.+ ++
T Consensus       149 lgltPq~~~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~vp-----------------~-~~a~~It~~l-~i  209 (275)
T 3vav_A          149 VGLTPQSVHAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEAVP-----------------T-LVAAEVTREL-SI  209 (275)
T ss_dssp             EESCGGGHHHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEEESCC-----------------H-HHHHHHHHHC-SS
T ss_pred             cCCCceEEeccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEecCCC-----------------H-HHHHHHHHhC-CC
Confidence            321         11    111123567888999999999999887553                 2 4788999998 79


Q ss_pred             eEEEec
Q psy2386         188 EIIING  193 (311)
Q Consensus       188 pvi~nG  193 (311)
                      |+|+-|
T Consensus       210 P~igIG  215 (275)
T 3vav_A          210 PTIGIG  215 (275)
T ss_dssp             CEEEES
T ss_pred             CEEEEc
Confidence            999876

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=96.34  E-value=0.043  Score=49.59  Aligned_cols=127  Identities=11%  Similarity=0.032  Sum_probs=82.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-+.+.-.++++.+.+.+  .+||.+-+-.  .   +.+
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~----------GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~--~---~t~   82 (292)
T 2vc6_A           18 IDEVALHDLVEWQIEEGSFGLVPC----------GTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGS--N---STA   82 (292)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEETT----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCC--S---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC--c---cHH
Confidence            377889999998888999999876          2234444445555567777776655  4788775432  2   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE-e-----cCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII-N-----GGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~-n-----GgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++++++ ++||+. |     |---+++.+.++.+
T Consensus        83 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La~  152 (292)
T 2vc6_A           83 EAIAFVRHAQNAGADGVLIVSPY--YNKPT-------QEGIYQHFKAIDAAS-TIPIIVYNIPGRSAIEIHVETLARIFE  152 (292)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCCHHHHHHHHh
Confidence            67899999999999999876442  11110       001245566777777 688764 3     43356777776654

>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A*

Probab=96.32  E-value=0.024  Score=52.41  Aligned_cols=131  Identities=12%  Similarity=0.226  Sum_probs=94.3

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN  129 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~  129 (311)
                      ..+...+|+++++.++...+ ||..+-+..|-.              .    -.+.++++|+..+..+.|-..-+|++  
T Consensus       128 ~~~~~~~~e~~~~~a~~~~~-g~~~~K~Kvg~~--------------~----d~~~v~avR~~~~~~l~vDaN~~~t~--  186 (338)
T 3ijl_A          128 FTIGIDTPDVVRAKTKECAG-LFNILKVKLGRD--------------N----DKEMIETIRSVTDLPIAVDANQGWKD--  186 (338)
T ss_dssp             CBCCCCCHHHHHHHHHHHHT-TCSSEEEECSSS--------------C----HHHHHHHHHTTCCCCEEEECTTCCCC--
T ss_pred             EEEeCCCHHHHHHHHHHHHh-cccEEEEecCcH--------------H----HHHHHHHHHhhcCCcEEEECcCCCCC--
Confidence            34566789999988887665 899999876531              1    23567888888776666666666631  


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcC
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYID  209 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~ad  209 (311)
                       .++..++++.+++.++.+|-               + ..++-|++..+++++.. .+||.+.=.+.+..|+.+++..+|
T Consensus       187 -~~~A~~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipIa~dE~~~~~~~~~~~~~a~d  248 (338)
T 3ijl_A          187 -RQYALDMIHWLKEKGIVMIE---------------Q-PMPKEQLDDIAWVTQQS-PLPVFADESLQRLGDVAALKGAFT  248 (338)
T ss_dssp             -HHHHHHHHHHHHHTTEEEEE---------------C-CSCTTCHHHHHHHHHTC-SSCEEESTTCCSGGGTGGGBTTBS
T ss_pred             -HHHHHHHHHHHhhCCCCEEE---------------C-CCCCCcHHHHHHHHhcC-CCCEEECCCCCCHHHHHHHHhhCC
Confidence             23568999999998877661               1 12335789999999988 699999889999999888764499


Q ss_pred             EEEEehhhhh
Q psy2386         210 GVMLGREAYK  219 (311)
Q Consensus       210 gVmigRa~l~  219 (311)
                      .|++==+-.+
T Consensus       249 ~i~~k~~~~G  258 (338)
T 3ijl_A          249 GINIKLMKCT  258 (338)
T ss_dssp             EEEECHHHHT
T ss_pred             EEEecccccC
Confidence            8886433333

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.29  E-value=0.0019  Score=60.98  Aligned_cols=44  Identities=16%  Similarity=0.342  Sum_probs=38.2

Q ss_pred             CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      .+..+|+.|+++++.+ ++||+.-| |.++++++.+.+. +|+|.++
T Consensus       209 ~p~~~~~~i~~i~~~~-~~Pv~vkg-v~t~e~a~~a~~aGad~I~vs  253 (380)
T 1p4c_A          209 DASFNWEALRWLRDLW-PHKLLVKG-LLSAEDADRCIAEGADGVILS  253 (380)
T ss_dssp             CTTCCHHHHHHHHHHC-CSEEEEEE-ECCHHHHHHHHHTTCSEEEEC
T ss_pred             CccccHHHHHHHHHhc-CCCEEEEe-cCcHHHHHHHHHcCCCEEEEc
Confidence            3457899999999998 79998764 8999999999987 9999993

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.23  E-value=0.044  Score=47.53  Aligned_cols=132  Identities=16%  Similarity=0.186  Sum_probs=84.8

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEecc--CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNC--GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~--gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ..++.+|...|...+.+.++.+.+.|+|.|.+-.  |.-.++         +    ..-.++++++++.++.|+.|-+=+
T Consensus         7 ~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~---------~----~~~~~~~~~lr~~~~~~~~v~lmv   73 (228)
T 1h1y_A            7 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPN---------L----TIGAPVIQSLRKHTKAYLDCHLMV   73 (228)
T ss_dssp             CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSC---------B----CBCHHHHHHHHTTCCSEEEEEEES
T ss_pred             CeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcc---------h----hhCHHHHHHHHhhcCCcEEEEEEe
Confidence            4478899999999999999999999999876653  211111         1    111266677777766677655544


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEEecCCCC-HHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIIINGGIKT-KKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~nGgI~s-~~da  201 (311)
                        ++.      .++++.+.++|+|.|++|+-..              +.. .+.++++++.  ++.++..=.-.| .+.+
T Consensus        74 --~d~------~~~i~~~~~agad~v~vH~~~~--------------~~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~  129 (228)
T 1h1y_A           74 --TNP------SDYVEPLAKAGASGFTFHIEVS--------------RDNWQELIQSIKAK--GMRPGVSLRPGTPVEEV  129 (228)
T ss_dssp             --SCG------GGGHHHHHHHTCSEEEEEGGGC--------------TTTHHHHHHHHHHT--TCEEEEEECTTSCGGGG
T ss_pred             --cCH------HHHHHHHHHcCCCEEEECCCCc--------------ccHHHHHHHHHHHc--CCCEEEEEeCCCCHHHH
Confidence              221      2356666779999999997642              123 3567777664  455543333334 3455


Q ss_pred             HHHHh---hcCEEEEe
Q psy2386         202 DLHLN---YIDGVMLG  214 (311)
Q Consensus       202 ~~~l~---~adgVmig  214 (311)
                      ..++.   .+|.|.++
T Consensus       130 ~~~~~~~~~~d~vl~~  145 (228)
T 1h1y_A          130 FPLVEAENPVELVLVM  145 (228)
T ss_dssp             HHHHHSSSCCSEEEEE
T ss_pred             HHHHhcCCCCCEEEEE
Confidence            66667   69999885

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=96.19  E-value=0.067  Score=49.33  Aligned_cols=127  Identities=9%  Similarity=0.035  Sum_probs=84.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +.-|-+..-+.+.-.++++.+++.+  .+||.+-+-.  .   +.+
T Consensus        52 iD~~~l~~lv~~li~~Gv~Gl~v~----------GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~--~---st~  116 (332)
T 2r8w_A           52 VDIEAFSALIARLDAAEVDSVGIL----------GSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGA--L---RTD  116 (332)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEES----------STTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECC--S---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC--C---CHH
Confidence            478889999998888999999887          2233344345555567777776655  4788875432  2   233


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|++++ ++||+ +|    .|+ -+++.+.++.+
T Consensus       117 eai~la~~A~~~Gadavlv~~P~--Y~~~s-------~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~~e~~~~La~  186 (332)
T 2r8w_A          117 EAVALAKDAEAAGADALLLAPVS--YTPLT-------QEEAYHHFAAVAGAT-ALPLAIYNNPTTTRFTFSDELLVRLAY  186 (332)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEECCHHHHCCCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHHc
Confidence            67899999999999999876432  11111       001245677888887 68875 45    243 57777777754

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=96.14  E-value=0.065  Score=48.56  Aligned_cols=127  Identities=11%  Similarity=0.033  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-..+.-.++++.+++.+  .+||.+-+-  -.   +.+
T Consensus        18 iD~~~l~~lv~~li~~Gv~gi~v~----------GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg--~~---~t~   82 (297)
T 2rfg_A           18 VDEKALAGLVDWQIKHGAHGLVPV----------GTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAG--SN---NPV   82 (297)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEECS----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECC--CS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccC--CC---CHH
Confidence            478889999998888999999886          2233343345555566777766655  478877443  22   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.+++++++ ++||+ +|     |---+++.+.++.+
T Consensus        83 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La~  152 (297)
T 2rfg_A           83 EAVRYAQHAQQAGADAVLCVAGY--YNRPS-------QEGLYQHFKMVHDAI-DIPIIVYNIPPRAVVDIKPETMARLAA  152 (297)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCT--TTCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHHc
Confidence            67899999999999999886432  11111       001245677788887 68875 55     43457777777653

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=96.14  E-value=0.024  Score=50.91  Aligned_cols=94  Identities=13%  Similarity=0.244  Sum_probs=61.7

Q ss_pred             HHHHHHHhcccc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH-HHHH
Q psy2386         103 SDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN-FVYN  179 (311)
Q Consensus       103 ~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~-~i~~  179 (311)
                      .+-++++++..+  .++.+-+..          + +-++.+.++|+|+|-++.-+               +.+.. .++.
T Consensus       169 ~~ai~~~r~~~~~~~~i~vev~t----------l-ee~~~A~~aGaD~I~ld~~~---------------~~~l~~~v~~  222 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEIECES----------F-EEAKNAMNAGADIVMCDNLS---------------VLETKEIAAY  222 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEEEESS----------H-HHHHHHHHHTCSEEEEETCC---------------HHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCceEEEEcCC----------H-HHHHHHHHcCCCEEEECCCC---------------HHHHHHHHHH
Confidence            455666777654  244442221          1 22444457899999887421               11222 2333


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      +...+|++||.++||| +++.+.++.+. +|++.+|+....-|++
T Consensus       223 l~~~~~~~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~~~  266 (273)
T 2b7n_A          223 RDAHYPFVLLEASGNI-SLESINAYAKSGVDAISVGALIHQATFI  266 (273)
T ss_dssp             HHHHCTTCEEEEESSC-CTTTHHHHHTTTCSEEECTHHHHTCCCC
T ss_pred             hhccCCCcEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCCCC
Confidence            4444567999999999 89999999987 9999999998776653

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=96.14  E-value=0.047  Score=49.93  Aligned_cols=124  Identities=11%  Similarity=0.079  Sum_probs=83.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-+.+.-.++++.+++.+  .+||.+-+-  - .   .+
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~----------GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg--~-s---t~   93 (314)
T 3d0c_A           30 IDWKGLDDNVEFLLQNGIEVIVPN----------GNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIG--Y-S---VD   93 (314)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEECTT----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC--S-S---HH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEC----------cccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCC--c-C---HH
Confidence            478889999999889999998776          2233343345555566777776655  478877543  2 2   23


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee--cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN--GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n--GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|++++ ++||+ +|  |- -+++.+.++.
T Consensus        94 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~tg~-l~~~~~~~La  158 (314)
T 3d0c_A           94 TAIELGKSAIDSGADCVMIHQPV--HPYIT-------DAGAVEYYRNIIEAL-DAPSIIYFKDAH-LSDDVIKELA  158 (314)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCC--CSCCC-------HHHHHHHHHHHHHHS-SSCEEEEECCTT-SCTHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCCCC-cCHHHHHHHH
Confidence            67899999999999999886442  11111       001246677888887 69975 45  43 6778777765

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.13  E-value=0.015  Score=56.63  Aligned_cols=67  Identities=18%  Similarity=0.311  Sum_probs=55.1

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|+|.|.++....    .+        ..-++.++++++.+|++||++ |++.++++++++.+. ||+|.+
T Consensus       233 ~~~a~~l~~aG~d~I~id~a~g----~~--------~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V  299 (496)
T 4fxs_A          233 EERVKALVEAGVDVLLIDSSHG----HS--------EGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV  299 (496)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCT----TS--------HHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhccCceEEeccccc----cc--------hHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence            5788999999999999985532    10        124688999999988899988 889999999999987 999998


Q ss_pred             e
Q psy2386         214 G  214 (311)
Q Consensus       214 g  214 (311)
                      |
T Consensus       300 g  300 (496)
T 4fxs_A          300 G  300 (496)
T ss_dssp             C
T ss_pred             C
Confidence            6

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=96.13  E-value=0.047  Score=49.64  Aligned_cols=126  Identities=10%  Similarity=0.014  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-+.+.-.++++.+++.+  .+||.+-+-  -.   +.+
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg--~~---~t~   94 (301)
T 1xky_A           30 IDFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG--SN---NTH   94 (301)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC--CS---CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCC--CC---CHH
Confidence            4788899999998899999998872          233343345555567777776655  478876443  22   233


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|++++ ++||+ +|     |---+++.+.++.
T Consensus        95 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  163 (301)
T 1xky_A           95 ASIDLTKKATEVGVDAVMLVAPY--YNKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS  163 (301)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHH
Confidence            67899999999999999876432  11111       001245666777777 68864 45     3335677776664

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.10  E-value=0.015  Score=56.55  Aligned_cols=68  Identities=22%  Similarity=0.300  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|+|.|.++....    .+        +..++.++++++.+|++||++ |++.|+++++++.+. ||+|.
T Consensus       230 ~~~~a~~l~~aG~d~I~id~a~g----~~--------~~~~~~v~~i~~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~  296 (490)
T 4avf_A          230 TGERVAALVAAGVDVVVVDTAHG----HS--------KGVIERVRWVKQTFPDVQVIG-GNIATAEAAKALAEAGADAVK  296 (490)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCC----SB--------HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEEE
T ss_pred             hHHHHHHHhhcccceEEecccCC----cc--------hhHHHHHHHHHHHCCCceEEE-eeeCcHHHHHHHHHcCCCEEE
Confidence            46788999999999999985532    11        124688999999987889887 889999999999987 99999


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +|
T Consensus       297 vg  298 (490)
T 4avf_A          297 VG  298 (490)
T ss_dssp             EC
T ss_pred             EC
Confidence            95

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=96.03  E-value=0.042  Score=50.30  Aligned_cols=85  Identities=12%  Similarity=-0.032  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +.+
T Consensus        42 iD~~~l~~lv~~li~~Gv~Gi~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv--g~~---~t~  106 (315)
T 3na8_A           42 LDLPALGRSIERLIDGGVHAIAPLG----------STGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSV--SDL---TTA  106 (315)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEECSS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCC---CHH
Confidence            4788899999999899999998872          233333344555566777776655  57888743  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      +.+++++.+++.|+|++.+..-
T Consensus       107 ~ai~la~~A~~~Gadavlv~~P  128 (315)
T 3na8_A          107 KTVRRAQFAESLGAEAVMVLPI  128 (315)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHHHhcCCCEEEECCC
Confidence            6889999999999999988643

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=96.03  E-value=0.056  Score=48.97  Aligned_cols=126  Identities=13%  Similarity=0.010  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+  |-.   +.+
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~   89 (297)
T 3flu_A           25 IHYEQLRDLIDWHIENGTDGIVAVG----------TTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGT--GAN---NTV   89 (297)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCc----------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCc---CHH
Confidence            4788899999988899999998872          223333334555566777766655  47887743  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++++++ ++||+ +|     |---+++.+.++.
T Consensus        90 ~ai~la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  158 (297)
T 3flu_A           90 EAIALSQAAEKAGADYTLSVVPY--YNKPS-------QEGIYQHFKTIAEAT-SIPMIIYNVPGRTVVSMTNDTILRLA  158 (297)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEECCchhccCCCHHHHHHHH
Confidence            68899999999999999876432  11110       001245666777776 67764 44     3334566665553

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=96.02  E-value=0.1  Score=45.23  Aligned_cols=140  Identities=8%  Similarity=0.102  Sum_probs=83.8

Q ss_pred             CC-CeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          45 EH-PIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        45 ~~-p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +. +++.=+-=.| |+..+.+++.+.++  |.+.+|.....               ++-+...++...+. +.-|+|=.+
T Consensus        52 ~~~~VflDlK~~DI~nTv~~~~~~~~~~--d~vTVh~~~G~---------------~~~~~~a~~~~~~~-~~~v~vLts  113 (222)
T 4dbe_A           52 DVEEIIVDFKLADIGYIMKSIVERLSFA--NSFIAHSFIGV---------------KGSLDELKRYLDAN-SKNLYLVAV  113 (222)
T ss_dssp             CCSEEEEEEEECSCHHHHHHHHTTCTTC--SEEEEESTTCT---------------TTTHHHHHHHHHHT-TCEEEEEEE
T ss_pred             CCCeEEEEeeecchHHHHHHHHHHHHhC--CEEEEEcCcCc---------------HHHHHHHHHHHHhc-CCcEEEEEe
Confidence            45 7777765444 56666666666555  99999843220               11233334443332 334555444


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EI  201 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da  201 (311)
                      ....+.... ....+++...++|++.+++.+..                  -+.++.+++.+++ .++..+||+... +.
T Consensus       114 ~s~~~~~~~-~~~~~a~~a~~~g~~GvV~sat~------------------p~e~~~ir~~~~~-~~~vtPGI~~~g~tp  173 (222)
T 4dbe_A          114 MSHEGWSTL-FADYIKNVIREISPKGIVVGGTK------------------LDHITQYRRDFEK-MTIVSPGMGSQGGSY  173 (222)
T ss_dssp             CSSTTCCCT-THHHHHHHHHHHCCSEEEECTTC------------------HHHHHHHHHHCTT-CEEEECCBSTTSBCT
T ss_pred             CCCcchHHH-HHHHHHHHHHHhCCCEEEECCCC------------------HHHHHHHHHhCCC-CEEEcCCcccCccCH
Confidence            432221111 23578888899999999875532                  1457778887766 677888887321 23


Q ss_pred             HHHHhh-cCEEEEehhhhhCCc
Q psy2386         202 DLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .+.++. +|.+.|||+++.-+.
T Consensus       174 ~~a~~~Gad~iVVGR~I~~A~d  195 (222)
T 4dbe_A          174 GDAVCAGADYEIIGRSIYNAGN  195 (222)
T ss_dssp             THHHHHTCSEEEECHHHHTSSS
T ss_pred             HHHHHcCCCEEEECHHhcCCCC
Confidence            333444 999999999977544

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=95.99  E-value=0.052  Score=49.66  Aligned_cols=127  Identities=14%  Similarity=0.070  Sum_probs=78.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      .=|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+  |..   +.
T Consensus        40 ~iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv--g~~---st  104 (314)
T 3qze_A           40 RLDWDSLAKLVDFHLQEGTNAIVAVG----------TTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGT--GAN---ST  104 (314)
T ss_dssp             CBCHHHHHHHHHHHHHHTCCEEEESS----------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SH
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCc---CH
Confidence            34788899999988889999998872          233333344555566676666655  47887743  322   23


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      .+.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++.+++ ++||+ +|     |---+++.+.++.
T Consensus       105 ~eai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  174 (314)
T 3qze_A          105 REAVALTEAAKSGGADACLLVTPY--YNKPT-------QEGMYQHFRHIAEAV-AIPQILYNVPGRTSCDMLPETVERLS  174 (314)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHS-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHh
Confidence            468899999999999999876432  11100       001245566666666 57764 33     3334555555543

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=95.98  E-value=0.061  Score=48.69  Aligned_cols=127  Identities=13%  Similarity=0.071  Sum_probs=83.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=++          +..|-+..-..+.-.++++.+.+.+  .+||.+-+-.  .   +.+
T Consensus        21 iD~~~l~~lv~~li~~Gv~gl~~~----------GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~--~---~t~   85 (294)
T 3b4u_A           21 VDIDAMIAHARRCLSNGCDSVTLF----------GTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLV--D---SIE   85 (294)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEES----------STTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECC--S---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCC--c---cHH
Confidence            478889999998889999999887          2234444445555577778777766  4788775432  2   233


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCC--CCeEE-Ee----cCC-CCHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFP--ELEII-IN----GGI-KTKKEIDL  203 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~--~ipvi-~n----GgI-~s~~da~~  203 (311)
                      +.+++++.+++.|+|++.+..-.  +.. .+       ...-+++.+++++++|  ++||+ +|    .|+ -+++.+.+
T Consensus        86 ~ai~la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~  156 (294)
T 3b4u_A           86 DAADQSAEALNAGARNILLAPPS--YFKNVS-------DDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGR  156 (294)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCCC--SSCSCC-------HHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHH
Confidence            67899999999999999886432  111 11       0012456667777764  68864 45    233 56777776


Q ss_pred             HH
Q psy2386         204 HL  205 (311)
Q Consensus       204 ~l  205 (311)
                      +.
T Consensus       157 La  158 (294)
T 3b4u_A          157 LK  158 (294)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=95.97  E-value=0.046  Score=49.64  Aligned_cols=91  Identities=11%  Similarity=0.088  Sum_probs=62.7

Q ss_pred             HHHHHHHHhccccc-eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         102 VSDCIKAMRDSVEI-DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       102 ~~~iv~~v~~~~~~-pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      +.+-++++++..+. ++.|-+..          + +-++.+.++|+|+|-++.-                  +.+.++++
T Consensus       195 i~~ai~~~r~~~~~~kI~vev~t----------l-ee~~eA~~aGaD~I~ld~~------------------~~e~l~~~  245 (296)
T 1qap_A          195 VRQAVEKAFWLHPDVPVEVEVEN----------L-DELDDALKAGADIIMLDNF------------------NTDQMREA  245 (296)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEESS----------H-HHHHHHHHTTCSEEEESSC------------------CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCC----------H-HHHHHHHHcCCCEEEECCC------------------CHHHHHHH
Confidence            34556666665532 34442221          2 2344556889999988642                  34666666


Q ss_pred             HHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         181 KKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       181 ~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ++.+ ++++|.++||| +++.+.++.+. +|++.+|+....-|+
T Consensus       246 v~~~~~~~~I~ASGGI-t~~~i~~~a~~GvD~isvGsli~~a~~  288 (296)
T 1qap_A          246 VKRVNGQARLEVSGNV-TAETLREFAETGVDFISVGALTKHVRA  288 (296)
T ss_dssp             HHTTCTTCCEEECCCS-CHHHHHHHHHTTCSEEECSHHHHEEEC
T ss_pred             HHHhCCCCeEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCC
Confidence            6655 25999999999 99999999987 999999997665554

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=95.96  E-value=0.24  Score=43.20  Aligned_cols=137  Identities=12%  Similarity=0.213  Sum_probs=79.0

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cc--e--eEEEE
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EI--D--ITVKH  121 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~--p--vsvKi  121 (311)
                      +=+-++ ..|+....+++.+.++|+|.|-+|.-..                .+.+...++.+++..  +.  |  +.|-.
T Consensus        59 lD~kl~-Dip~t~~~~~~~~~~~Gad~vtvH~~~g----------------~~~l~~~~~~~~~~~~~g~~~~~~~~V~~  121 (239)
T 1dbt_A           59 LDLKLH-DIPTTVNKAMKRLASLGVDLVNVHAAGG----------------KKMMQAALEGLEEGTPAGKKRPSLIAVTQ  121 (239)
T ss_dssp             EEEEEC-SCHHHHHHHHHHHHTTTCSEEEEEGGGC----------------HHHHHHHHHHHHHHSCTTSCCCEEEEECS
T ss_pred             EEeccc-cchHHHHHHHHHHHhcCCCEEEEeCcCC----------------HHHHHHHHHHHHhhhccCCCCccEEEEEE
Confidence            335565 7788888788888899999999994221                123445566665531  33  4  44433


Q ss_pred             eccCCC----------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         122 RIGIDD----------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       122 R~g~~~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      ....+.          .+..+....++....+.|.+.+....                     +.++++++..++.+++.
T Consensus       122 ~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~v~~~---------------------~~i~~lr~~~~~~~i~v  180 (239)
T 1dbt_A          122 LTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDGVVCSV---------------------HEAKAIYQAVSPSFLTV  180 (239)
T ss_dssp             CTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSEEECCG---------------------GGHHHHTTTSCTTCEEE
T ss_pred             cCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCEEEECH---------------------HHHHHHHHhcCCCcEEE
Confidence            332210          01011112222223456776654432                     22556666654468999


Q ss_pred             ecCCCCHHH----------HHHHHhh-cCEEEEehhhhhCCc
Q psy2386         192 NGGIKTKKE----------IDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       192 nGgI~s~~d----------a~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .|||+.-..          ..++++. +|.+.+||+++..|.
T Consensus       181 ~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~d  222 (239)
T 1dbt_A          181 TPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAED  222 (239)
T ss_dssp             ECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSC
T ss_pred             eCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCC
Confidence            999975322          1445554 999999999987655

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=95.95  E-value=0.023  Score=55.97  Aligned_cols=83  Identities=16%  Similarity=0.080  Sum_probs=57.9

Q ss_pred             HHHHHHHcC---CCEEEEecCccccccCCCCcCCCC-CcCcHHHHHHHHHhC-----CCCeEEEecCCCCHHHHHHHHh-
Q psy2386         137 FVGTVSSAG---CRTFIVHARNAFLKKLNPKQNRKI-PILKYNFVYNLKKDF-----PELEIIINGGIKTKKEIDLHLN-  206 (311)
Q Consensus       137 ~~~~l~~~G---~~~itvh~Rt~~~~G~~g~~~~~~-~~~~~~~i~~i~~~~-----~~ipvi~nGgI~s~~da~~~l~-  206 (311)
                      -+..+.+.|   +|+|.+.+-...   .+ ++. .. ++..++.++++++.+     .++||++-||| +++++.++++ 
T Consensus       120 ea~~A~~~G~~~aDYv~~Gpvf~T---~t-K~~-~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI-~~~ni~~v~~~  193 (540)
T 3nl6_A          120 EVDELSKMGPDMVDYIGVGTLFPT---LT-KKN-PKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGL-HPDNIERVLYQ  193 (540)
T ss_dssp             HHHHHHHTCC--CCEEEESCCSCC---CC-CC-----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSC-CTTTHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEcCCCCC---CC-CCC-cCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCC-CHHHHHHHHHh
Confidence            356677889   999988433211   01 111 11 345688888777652     27999999999 7899999986 


Q ss_pred             -------h-cCEEEEehhhhhCCcchH
Q psy2386         207 -------Y-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       207 -------~-adgVmigRa~l~~P~i~~  225 (311)
                             . +|||.++++++..+....
T Consensus       194 ~~~~g~~~GadgvAVvsaI~~a~dp~~  220 (540)
T 3nl6_A          194 CVSSNGKRSLDGICVVSDIIASLDAAK  220 (540)
T ss_dssp             CBCTTSSCBCSCEEESHHHHTCTTHHH
T ss_pred             hcccccccCceEEEEeHHHhcCCCHHH
Confidence                   4 999999999998666443

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=95.93  E-value=0.049  Score=49.83  Aligned_cols=126  Identities=9%  Similarity=0.038  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-..+.-.++++.+.+.+  .+||.+-+  |-    +.+
T Consensus        30 iD~~~l~~lv~~li~~Gv~Gl~v~----------GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGv--g~----~t~   93 (316)
T 3e96_A           30 IDWHHYKETVDRIVDNGIDVIVPC----------GNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGI--GY----ATS   93 (316)
T ss_dssp             BCHHHHHHHHHHHHTTTCCEECTT----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEE--CS----SHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeC----------ccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEe--Cc----CHH
Confidence            478889999999889999999876          2233333344555566777766655  47888865  41    234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-cCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-GGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-GgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.++|.+++ ++||+ +| |--.+++.+.++.+
T Consensus        94 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~g~~l~~~~~~~La~  159 (316)
T 3e96_A           94 TAIELGNAAKAAGADAVMIHMPI--HPYVT-------AGGVYAYFRDIIEAL-DFPSLVYFKDPEISDRVLVDLAP  159 (316)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCC--CSCCC-------HHHHHHHHHHHHHHH-TSCEEEEECCTTSCTHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCCCCCCHHHHHHHHc
Confidence            67899999999999999876332  11111       011246677888887 68875 67 65667777777653

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=95.93  E-value=0.052  Score=49.44  Aligned_cols=126  Identities=13%  Similarity=0.092  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=++          +..|-+..-+.+.-.++++.+++.+  .+||.+-+-  -.   +.+
T Consensus        30 iD~~~l~~lv~~li~~Gv~gl~v~----------GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg--~~---st~   94 (306)
T 1o5k_A           30 LDLESYERLVRYQLENGVNALIVL----------GTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAG--TN---STE   94 (306)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEES----------SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECC--CS---CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeC----------ccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCC--Cc---cHH
Confidence            378889999998888999999887          2233344345555566777776655  478877543  22   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|++++ ++||+ +|    .|+ -+++.+.++.
T Consensus        95 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  163 (306)
T 1o5k_A           95 KTLKLVKQAEKLGANGVLVVTPY--YNKPT-------QEGLYQHYKYISERT-DLGIVVYNVPGRTGVNVLPETAARIA  163 (306)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTTC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence            67899999999999999876432  11100       001234555666665 57754 34    233 4566665554

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.93  E-value=0.03  Score=54.19  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|+|.|.+++-    .|..        ...|+.+.++++.+|++||+ .|+|.+.+++.++++. +|+|.
T Consensus       234 ~~~~a~~l~~~G~d~ivi~~a----~g~~--------~~~~~~i~~l~~~~p~~pvi-~G~v~t~~~a~~~~~~Gad~I~  300 (491)
T 1zfj_A          234 TFERAEALFEAGADAIVIDTA----HGHS--------AGVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVK  300 (491)
T ss_dssp             HHHHHHHHHHHTCSEEEECCS----CTTC--------HHHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHcCCCeEEEeee----cCcc--------hhHHHHHHHHHHHCCCCcEe-CCCccCHHHHHHHHHcCCCEEE
Confidence            357788999999999999862    1211        12578899999988789999 9999999999999987 99999


Q ss_pred             Eehh
Q psy2386         213 LGRE  216 (311)
Q Consensus       213 igRa  216 (311)
                      +|.|
T Consensus       301 vg~g  304 (491)
T 1zfj_A          301 VGIG  304 (491)
T ss_dssp             ECSS
T ss_pred             ECcc
Confidence            9853

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=95.91  E-value=0.059  Score=48.66  Aligned_cols=126  Identities=16%  Similarity=0.065  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+  |-.   +..
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~~---~t~   83 (291)
T 3tak_A           19 VDWKSLEKLVEWHIEQGTNSIVAVG----------TTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGT--GAN---STR   83 (291)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCeEEEeC--CCC---CHH
Confidence            4778899999988889999997762          123333334444466677666655  47887743  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++.+++ ++||+ +|     |---+++.+.++.
T Consensus        84 ~ai~la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  152 (291)
T 3tak_A           84 EAIELTKAAKDLGADAALLVTPY--YNKPT-------QEGLYQHYKAIAEAV-ELPLILYNVPGRTGVDLSNDTAVRLA  152 (291)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCHHHHHHHH
Confidence            67899999999999999876432  11110       001245566677766 67764 43     3334555555543

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=95.90  E-value=0.11  Score=47.13  Aligned_cols=122  Identities=11%  Similarity=0.093  Sum_probs=79.0

Q ss_pred             HHHHHcCCCEEE----eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE--E--eccC--CCCCcHHHH
Q psy2386          65 KIIQKWGYDEIN----LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK--H--RIGI--DDINSYDFV  134 (311)
Q Consensus        65 ~~~~~~g~d~Id----iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK--i--R~g~--~~~~~~~~~  134 (311)
                      +.+.+.|+|+|-    ||.|.|...           +..+.+.++++++.+ .++|+.+=  +  |.|-  .++.+.+.+
T Consensus       135 e~AvrlGADaV~~l~~i~~Gs~~e~-----------~~l~~la~vv~ea~~-~GlP~~~ep~~y~r~gg~v~~~~dp~~V  202 (307)
T 3fok_A          135 SSMVDRGVDFAKTLVRINLSDAGTA-----------PTLEATAHAVNEAAA-AQLPIMLEPFMSNWVNGKVVNDLSTDAV  202 (307)
T ss_dssp             HHHHHHTCCEEEEEEEECTTCTTHH-----------HHHHHHHHHHHHHHH-TTCCEEEEEEEEEEETTEEEECCSHHHH
T ss_pred             HHHHHCCCCEEEEEEEECCCChhHH-----------HHHHHHHHHHHHHHH-cCCcEEEEeeccccCCCCcCCCCCHHHH
Confidence            344567999966    677777542           334666777777665 48897774  2  3221  122334455


Q ss_pred             HHHHHHHHHcCCC----EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC--CHHHHHHHHh--
Q psy2386         135 RDFVGTVSSAGCR----TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK--TKKEIDLHLN--  206 (311)
Q Consensus       135 ~e~~~~l~~~G~~----~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~--s~~da~~~l~--  206 (311)
                      ...++...+.|+|    .|.+-               |.     +..+++.+.. .+||+..||=.  +.+++.++.+  
T Consensus       203 a~aaRiAaELGADs~~tivK~~---------------y~-----e~f~~Vv~a~-~vPVViaGG~k~~~~~e~L~~v~~A  261 (307)
T 3fok_A          203 IQSVAIAAGLGNDSSYTWMKLP---------------VV-----EEMERVMEST-TMPTLLLGGEGGNDPDATFASWEHA  261 (307)
T ss_dssp             HHHHHHHHTCSSCCSSEEEEEE---------------CC-----TTHHHHGGGC-SSCEEEECCSCC--CHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcCCCEEEeC---------------Cc-----HHHHHHHHhC-CCCEEEeCCCCCCCHHHHHHHHHHH
Confidence            6667778899999    77551               11     2257888887 59988777665  5677766653  


Q ss_pred             ---h-cCEEEEehhhhh
Q psy2386         207 ---Y-IDGVMLGREAYK  219 (311)
Q Consensus       207 ---~-adgVmigRa~l~  219 (311)
                         . +.||.+||-++.
T Consensus       262 ~~~aGa~Gv~vGRNIfQ  278 (307)
T 3fok_A          262 LTLPGVRGLTVGRTLLY  278 (307)
T ss_dssp             TTSTTEEEEEECTTTSS
T ss_pred             HHhCCCeEEeechhhcc
Confidence               2 789999999987

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=95.90  E-value=0.051  Score=50.39  Aligned_cols=126  Identities=12%  Similarity=0.018  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-+.+.-.++++.+++.+  .+||.+-+-.  .   +.+
T Consensus        49 ID~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~--~---st~  113 (343)
T 2v9d_A           49 LDKPGTAALIDDLIKAGVDGLFFLG----------SGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGG--T---NAR  113 (343)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCS--S---CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCC--C---CHH
Confidence            4788899999988899999998872          233334345555567777776655  4788764432  2   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|++++ ++||+ +|     |---+++.+.++.
T Consensus       114 eai~la~~A~~~Gadavlv~~P~--Y~~~s-------~~~l~~~f~~VA~a~-~lPiilYn~P~~tg~~l~~e~~~~La  182 (343)
T 2v9d_A          114 ETIELSQHAQQAGADGIVVINPY--YWKVS-------EANLIRYFEQVADSV-TLPVMLYNFPALTGQDLTPALVKTLA  182 (343)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCS--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCchhcCcCCCHHHHHHHH
Confidence            67899999999999999876432  11111       001245566777776 68864 45     3234667666665

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=95.89  E-value=0.056  Score=49.48  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=59.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      .=|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +.
T Consensus        39 ~iD~~~l~~li~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGv--g~~---st  103 (315)
T 3si9_A           39 AIDEKAFCNFVEWQITQGINGVSPVG----------TTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGA--GSN---ST  103 (315)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEEC--CCS---SH
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCc----------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeC--CCC---CH
Confidence            34788999999999899999998762          223333334454466667666655  57888743  322   23


Q ss_pred             HHHHHHHHHHHHcCCCEEEEec
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~  153 (311)
                      .+.+++++.+++.|+|++.+..
T Consensus       104 ~~ai~la~~A~~~Gadavlv~~  125 (315)
T 3si9_A          104 SEAVELAKHAEKAGADAVLVVT  125 (315)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHHhcCCCEEEECC
Confidence            4688999999999999998764

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=95.89  E-value=0.021  Score=55.77  Aligned_cols=71  Identities=17%  Similarity=0.364  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..+.+..|.++|+|.|+|..-.    |++-        .-.+.++.+++.+|+++|| .|+|.|++.++.+++. ||+|
T Consensus       281 d~~eR~~aLv~AGvD~iviD~ah----Ghs~--------~v~~~i~~ik~~~p~~~vi-aGNVaT~e~a~~Li~aGAD~v  347 (556)
T 4af0_A          281 GDKDRLKLLAEAGLDVVVLDSSQ----GNSV--------YQIEFIKWIKQTYPKIDVI-AGNVVTREQAAQLIAAGADGL  347 (556)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCSC----CCSH--------HHHHHHHHHHHHCTTSEEE-EEEECSHHHHHHHHHHTCSEE
T ss_pred             cHHHHHHHHHhcCCcEEEEeccc----cccH--------HHHHHHHHHHhhCCcceEE-eccccCHHHHHHHHHcCCCEE
Confidence            45688999999999999985332    2221        1368899999999887764 5899999999999987 9999


Q ss_pred             EEehh
Q psy2386         212 MLGRE  216 (311)
Q Consensus       212 migRa  216 (311)
                      -||-|
T Consensus       348 kVGiG  352 (556)
T 4af0_A          348 RIGMG  352 (556)
T ss_dssp             EECSS
T ss_pred             eecCC
Confidence            98865

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=95.85  E-value=0.34  Score=42.43  Aligned_cols=144  Identities=16%  Similarity=0.236  Sum_probs=82.6

Q ss_pred             CCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      +.+++.=+-= .-|+..+.+++.+.++|+|.+.+|...           +     ++-+...++...+.-  +.|..+-+
T Consensus        59 g~~iflDlK~~DI~nTv~~~~~~~~~~gad~vTvh~~~-----------G-----~~~~~~a~~~~~~~~~~~~~~l~~V  122 (239)
T 3tr2_A           59 GYRIFLDLKFYDIPQTVAGACRAVAELGVWMMNIHISG-----------G-----RTMMETVVNALQSITLKEKPLLIGV  122 (239)
T ss_dssp             TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGG-----------C-----HHHHHHHHHHHHTCCCSSCCEEEEE
T ss_pred             CCCEEEEecccccchHHHHHHHHHHhCCCCEEEEeccC-----------C-----HHHHHHHHHHHHhcCcCCCceEEEE
Confidence            4667766653 347777778888899999999999422           1     233444444443321  12322221


Q ss_pred             ec--cCCC---------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         122 RI--GIDD---------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       122 R~--g~~~---------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      -.  ..+.         ..-.+...++++...++|++.+++.+..                     +..+++.++.-.++
T Consensus       123 t~LTS~~~~~l~~~g~~~~~~~~v~~~A~~a~~~g~~GvV~s~~e---------------------~~~ir~~~~~~fl~  181 (239)
T 3tr2_A          123 TILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDGVVCSAQE---------------------AALLRKQFDRNFLL  181 (239)
T ss_dssp             CSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHHTCCEEECCHHH---------------------HHHHHTTCCTTSEE
T ss_pred             EEEeeCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECchh---------------------HHHHHHhcCCCcEE
Confidence            11  1110         1112345667777888899999775432                     34566665433466


Q ss_pred             EecCCCCHHH----------HHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         191 INGGIKTKKE----------IDLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       191 ~nGgI~s~~d----------a~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      ...||+-..+          ..++++. +|.+.+||+++..+....
T Consensus       182 vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~  227 (239)
T 3tr2_A          182 VTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLK  227 (239)
T ss_dssp             EECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHH
T ss_pred             ECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence            7777763211          3344444 999999999988655433

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=95.76  E-value=0.084  Score=46.18  Aligned_cols=117  Identities=10%  Similarity=-0.012  Sum_probs=79.9

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      ++++.+++.   +|..=+|.. + .   ++..++++.+.+.|+..|-+.-|+.               ...+.|+++++.
T Consensus        26 ~~~~~l~~~---~vv~Vir~~-~-~---~~a~~~a~al~~gGi~~iEvt~~t~---------------~a~e~I~~l~~~   82 (232)
T 4e38_A           26 TINNQLKAL---KVIPVIAID-N-A---EDIIPLGKVLAENGLPAAEITFRSD---------------AAVEAIRLLRQA   82 (232)
T ss_dssp             HHHHHHHHH---CEEEEECCS-S-G---GGHHHHHHHHHHTTCCEEEEETTST---------------THHHHHHHHHHH
T ss_pred             HHHHHHHhC---CEEEEEEcC-C-H---HHHHHHHHHHHHCCCCEEEEeCCCC---------------CHHHHHHHHHHh
Confidence            455555553   555556652 1 1   2478999999999999999977763               246889999999


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      +|+ .+++.|.|.+.++++..++. ||+|+..-   .+|.+.+...+.  +-.-.+...|+.|....
T Consensus        83 ~~~-~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~---~~~~vi~~~~~~--gi~~ipGv~TptEi~~A  143 (232)
T 4e38_A           83 QPE-MLIGAGTILNGEQALAAKEAGATFVVSPG---FNPNTVRACQEI--GIDIVPGVNNPSTVEAA  143 (232)
T ss_dssp             CTT-CEEEEECCCSHHHHHHHHHHTCSEEECSS---CCHHHHHHHHHH--TCEEECEECSHHHHHHH
T ss_pred             CCC-CEEeECCcCCHHHHHHHHHcCCCEEEeCC---CCHHHHHHHHHc--CCCEEcCCCCHHHHHHH
Confidence            864 78899999999999999987 99998752   355555554432  11100113466666544

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=95.74  E-value=0.3  Score=42.47  Aligned_cols=135  Identities=15%  Similarity=0.073  Sum_probs=77.3

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHc
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSA  144 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~  144 (311)
                      ..+.++|+|.|-|+.++-     +..        ...+.+.++...+. +.-+.|  -+|    ++    .+. +.+...
T Consensus        82 ~~l~~~Ga~~VllghseR-----R~~--------~~e~~~k~~~A~~~-GL~~iv--cVg----e~----~e~-~~~~~~  136 (225)
T 1hg3_A           82 EAVKEAGAVGTLLNHSEN-----RMI--------LADLEAAIRRAEEV-GLMTMV--CSN----NP----AVS-AAVAAL  136 (225)
T ss_dssp             HHHHHTTCCEEEESCGGG-----CCB--------HHHHHHHHHHHHHH-TCEEEE--EES----SH----HHH-HHHHTT
T ss_pred             HHHHHcCCCEEEECcchh-----cCC--------HHHHHHHHHHHHHC-CCEEEE--EeC----CH----HHH-HHHhcC
Confidence            456788999999974431     111        11234444444332 443333  333    11    121 445667


Q ss_pred             CCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHH-HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         145 GCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNL-KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       145 G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i-~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      +.+.|-+-+|..  -| +|..- .+...+ .+.+.++ ++..++++|++-|+|.+.+++..+... +||+.||++++.-+
T Consensus       137 ~~~iIayep~wa--iG-tG~~v-~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~  212 (225)
T 1hg3_A          137 NPDYVAVEPPEL--IG-TGIPV-SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAK  212 (225)
T ss_dssp             CCSEEEECCTTT--TT-TSCCT-TTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCS
T ss_pred             CCCEEEEeChhh--hc-cCCCC-CCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCc
Confidence            888888888853  23 11000 011122 2322232 332336899999999999999988876 99999999999877


Q ss_pred             cchHHhH
Q psy2386         222 FLMSNFD  228 (311)
Q Consensus       222 ~i~~~~~  228 (311)
                      .+..-+.
T Consensus       213 ~~~~~i~  219 (225)
T 1hg3_A          213 DPEKAIW  219 (225)
T ss_dssp             SHHHHHH
T ss_pred             CHHHHHH
Confidence            6544443

>3p0w_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, protein structure initiative; HET: GKR; 1.71A {Ralstonia pickettii} PDB: 4hn8_A 3nxl_A

Probab=95.73  E-value=0.057  Score=52.18  Aligned_cols=123  Identities=10%  Similarity=0.074  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      +.+|+++++.|+...+ .||..|-|..|.+               +++.-.+.++++|++. ++.+.|-..-+|+.    
T Consensus       198 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~rv~avRea~pd~~L~vDaN~~w~~----  258 (470)
T 3p0w_A          198 AMTPAAIARLAEAATERYGFADFKLKGGVM---------------PGAEEMEAIAAIKARFPHARVTLDPNGAWSL----  258 (470)
T ss_dssp             BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTBBCH----
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEEeCCCC---------------CHHHHHHHHHHHHHhCCCCeEEeeCCCCCCH----
Confidence            3689999998887665 6999999987643               2233345677777765 44555555555653    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      ++...+++.+++. +.+|-               + ..++-|    ++..+++++.. .+||.+.=-+.++.++.++++.
T Consensus       259 ~~Ai~~~~~Le~~-l~~iE---------------e-P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~l~~  320 (470)
T 3p0w_A          259 NEAIALCKGQGHL-VAYAE---------------D-PCGPEAGYSGREVMAEFKRAT-GIPTATNMIATDWRQMGHAVQL  320 (470)
T ss_dssp             HHHHHHHTTCTTT-CSEEE---------------S-CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSSCSHHHHHHHHHT
T ss_pred             HHHHHHHHhcccc-ceeec---------------C-CCChhhccchHHHHHHHHhcC-CCCEEeCCccCCHHHHHHHHHc
Confidence            3567788878776 55551               1 112234    67788999887 6999886678889999999875


Q ss_pred             --cCEEEE
Q psy2386         208 --IDGVML  213 (311)
Q Consensus       208 --adgVmi  213 (311)
                        +|.+++
T Consensus       321 ~a~div~~  328 (470)
T 3p0w_A          321 HAVDIPLA  328 (470)
T ss_dssp             TCCSEEBC
T ss_pred             CCCCEEEe
Confidence              887764

>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A*

Probab=95.71  E-value=0.043  Score=50.47  Aligned_cols=136  Identities=13%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g  124 (311)
                      |+-..+...+|+++.+.++   +.||..+-+..|.|         |..+    +.-.+.++++|+.+  ++.+.|-..-+
T Consensus        71 ~~~~ti~~~~~e~~~~~~~---~~G~~~~KiKvg~~---------g~~~----~~d~~~v~avR~~~G~~~~L~vDaN~~  134 (327)
T 2opj_A           71 PVNATVPAVGPEEAARIVA---SSGCTTAKVKVAER---------GQSE----ANDVARVEAVRDALGPRGRVRIDVNGA  134 (327)
T ss_dssp             EBCEEECSCCHHHHHHHHH---HHCCSEEEEECCC-------------------CHHHHHHHHHHHHCTTSEEEEECTTC
T ss_pred             EEeEEeCCCCHHHHHHHHH---HCCCCEEEEEeCCC---------CCCH----HHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            4445566678887655544   46999999987643         1112    22245677777766  45666666666


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                      |+.    ++..++++.+++.++.+|               ++   |..+++..+++++.. .+||.+.=.+.+..|+.++
T Consensus       135 w~~----~~A~~~~~~L~~~~l~~i---------------Eq---P~~~~~~~~~l~~~~-~iPIa~dEs~~~~~~~~~~  191 (327)
T 2opj_A          135 WDV----DTAVRMIRLLDRFELEYV---------------EQ---PCATVDELAEVRRRV-SVPIAADESIRRAEDPLRV  191 (327)
T ss_dssp             SCH----HHHHHHHHHHGGGCEEEE---------------EC---CSSSHHHHHHHHHHC-SSCEEC-----------CT
T ss_pred             CCH----HHHHHHHHHHHhcCCcEE---------------eC---CCCCHHHHHHHHhhC-CCCEEcCCCCCCHHHHHHH
Confidence            653    356789999999887766               11   112578888999888 7999999899999999998


Q ss_pred             Hhh--cCEEEEehhhhhCC
Q psy2386         205 LNY--IDGVMLGREAYKNP  221 (311)
Q Consensus       205 l~~--adgVmigRa~l~~P  221 (311)
                      ++.  +|.|++==.-.+..
T Consensus       192 i~~~a~d~i~ik~~~~GGi  210 (327)
T 2opj_A          192 RDAEAADVVVLKVQPLGGV  210 (327)
T ss_dssp             TTTTCCSBEEECHHHHTSH
T ss_pred             HHhCCCCEEEeCccccCCH
Confidence            765  99998854444433

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=95.70  E-value=0.076  Score=45.78  Aligned_cols=136  Identities=13%  Similarity=0.219  Sum_probs=79.2

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEe
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR  122 (311)
                      +.+++.=+- +.-|+....+++.+.++|+|.|.+|..           ++     .+    +++...+... .-+.|-+-
T Consensus        58 ~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~vTvh~~-----------~G-----~~----~l~~~~~~~~~~~~~V~~l  117 (213)
T 1vqt_A           58 NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSC-----------AG-----YE----SVERALSATDKHVFVVVKL  117 (213)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGG-----------GC-----HH----HHHHHHHHCSSEEEEECCC
T ss_pred             CCCEEEEeecccCchHHHHHHHHHHHCCCCEEEEecc-----------CC-----HH----HHHHHHHhcCCCeEEEEEe
Confidence            456776664 334566677777777899999999932           11     12    2223322222 11233222


Q ss_pred             ccCCCCCcH-HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH--
Q psy2386         123 IGIDDINSY-DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK--  199 (311)
Q Consensus       123 ~g~~~~~~~-~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~--  199 (311)
                      ...+..  . +.....++. .+.|++ +.+.+                     +.++++++.++ -| +..+||.-..  
T Consensus       118 ts~~~~--l~~~v~~~a~~-~e~G~d-vV~~~---------------------~~~~~ir~~~~-~~-~v~pGI~~~~~~  170 (213)
T 1vqt_A          118 TSMEGS--LEDYMDRIEKL-NKLGCD-FVLPG---------------------PWAKALREKIK-GK-ILVPGIRMEVKA  170 (213)
T ss_dssp             TTSCCC--HHHHHHHHHHH-HHHTCE-EECCH---------------------HHHHHHTTTCC-SC-EEECCBC-----
T ss_pred             CCCCHH--HHHHHHHHHHH-hcCCCE-EEEcH---------------------HHHHHHHHHCC-CC-EEECCCCCCCCc
Confidence            222221  2 345677888 899999 43321                     34667777774 46 7788886432  


Q ss_pred             -H------HHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         200 -E------IDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       200 -d------a~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                       |      ..+ ++. +|++.+||+.+..+.-...++
T Consensus       171 ~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~  206 (213)
T 1vqt_A          171 DDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIK  206 (213)
T ss_dssp             ----CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHH
T ss_pred             cchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHH
Confidence             2      456 655 999999999987776444333

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=95.70  E-value=0.068  Score=48.31  Aligned_cols=125  Identities=10%  Similarity=0.041  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      |.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+  |..   +.++
T Consensus        21 D~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~   85 (292)
T 3daq_A           21 NLEALKAHVNFLLENNAQAIIVNG----------TTAESPTLTTDEKELILKTVIDLVDKRVPVIAGT--GTN---DTEK   85 (292)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEESS----------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---CHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECc----------cccccccCCHHHHHHHHHHHHHHhCCCCcEEEeC--Ccc---cHHH
Confidence            678888888888899999998872          223333334444456666666654  57888743  322   2346


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      .+++++.+++.|+|++.+..-.  +...+       ...-+++.+++.+++ ++||+ +|     |---+++.+.++.
T Consensus        86 ai~la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  153 (292)
T 3daq_A           86 SIQASIQAKALGADAIMLITPY--YNKTN-------QRGLVKHFEAIADAV-KLPVVLYNVPSRTNMTIEPETVEILS  153 (292)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCHHHHHHHh
Confidence            8899999999999999876432  11100       001244566666665 57764 44     4344566655554

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=95.68  E-value=0.11  Score=46.93  Aligned_cols=126  Identities=12%  Similarity=0.057  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-+.+.-.++++.+.+.+  .+||.+-+  |-.   +.+
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~~---~t~   82 (289)
T 2yxg_A           18 VDFDGLEENINFLIENGVSGIVAVG----------TTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGA--GSN---CTE   82 (289)
T ss_dssp             ECHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCC---CHH
Confidence            3788899999988899999998872          233334345555567777776655  47877644  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.++++++. ++||+ +|     |---+++.+.++.
T Consensus        83 ~ai~la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  151 (289)
T 2yxg_A           83 EAIELSVFAEDVGADAVLSITPY--YNKPT-------QEGLRKHFGKVAESI-NLPIVLYNVPSRTAVNLEPKTVKLLA  151 (289)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence            67899999999999999876432  11100       001234556666666 57764 44     3334666666654

>3mzn_A Glucarate dehydratase; lyase, structural genomics, protein structure initiative, PS nysgrc; 1.85A {Chromohalobacter salexigens} PDB: 3nfu_A

Probab=95.67  E-value=0.084  Score=50.71  Aligned_cols=123  Identities=15%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      +.+|+++++.|+...+ .||..|-|..|.+               +++.-.+.++++|++. ++.+.|-..-+|+.    
T Consensus       180 ~~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~----  240 (450)
T 3mzn_A          180 AMTPEAVANLARAAYDRYGFKDFKLKGGVL---------------RGEEEADCIRALHEAFPEARLALDPNGAWKL----  240 (450)
T ss_dssp             BCSHHHHHHHHHHHHHHHCCSEEEEECSSS---------------CHHHHHHHHHHHHHHCTTSEEEEECTTCBCH----
T ss_pred             CCCHHHHHHHHHHHHHhCCCCEEEECCCCC---------------CHHHHHHHHHHHHHhCCCCeEEEECCCCCCH----
Confidence            3579999998887655 6999999987643               2233345677777765 44555555555653    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      ++...+++.+++. +.+|-               + ..++-|    ++..+++++.. .+||.+.=-+.++.++.++++.
T Consensus       241 ~~A~~~~~~L~~~-i~~iE---------------e-P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~  302 (450)
T 3mzn_A          241 DEAVRVLEPIKHL-LSYAE---------------D-PCGQEGGFSGRETMAEFKKRT-GLPTATNMIATDYKQLQYAVQL  302 (450)
T ss_dssp             HHHHHHHGGGGGG-CSEEE---------------S-SBCCBTTBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhc-cceee---------------C-CCCcccccchHHHHHHHHHhc-CCCEEeCCccCCHHHHHHHHHc
Confidence            3567888888876 66551               1 011224    67788999887 6998886677889999988865


Q ss_pred             --cCEEEE
Q psy2386         208 --IDGVML  213 (311)
Q Consensus       208 --adgVmi  213 (311)
                        +|.+++
T Consensus       303 ~a~di~~~  310 (450)
T 3mzn_A          303 NSVDIPLA  310 (450)
T ss_dssp             TCCSEEBC
T ss_pred             CCCCEEEe
Confidence              887764

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=95.67  E-value=0.089  Score=47.85  Aligned_cols=127  Identities=13%  Similarity=0.071  Sum_probs=79.9

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      .=|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+++.+  .+||.+-+  |-..   .
T Consensus        32 ~iD~~~l~~lv~~li~~Gv~gi~v~G----------ttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGv--g~~~---t   96 (304)
T 3l21_A           32 SLDTATAARLANHLVDQGCDGLVVSG----------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGA--GTYD---T   96 (304)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC--CCSC---H
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCc----------cccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeC--CCCC---H
Confidence            34788999999999899999998872          223333334555566777776655  47887753  3222   3


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      ++.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|.+++ ++||+ +|     |--.+++.+.++.
T Consensus        97 ~~ai~la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  166 (304)
T 3l21_A           97 AHSIRLAKACAAEGAHGLLVVTPY--YSKPP-------QRGLQAHFTAVADAT-ELPMLLYDIPGRSAVPIEPDTIRALA  166 (304)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTSC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCCCCCHHHHHHHh
Confidence            468899999999999999886432  11100       001234566666666 67764 44     4444566655554

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=95.66  E-value=0.11  Score=47.57  Aligned_cols=95  Identities=12%  Similarity=0.136  Sum_probs=70.5

Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN  175 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~  175 (311)
                      ..++.+.+.++.+++.++.|+.|-+-.... ...   ...+.++.+.+.|++.|++|...                 .++
T Consensus        50 ~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~---~~~~~~~~~~~~g~d~V~~~~g~-----------------p~~  109 (328)
T 2gjl_A           50 PSPEALAAEIARCRELTDRPFGVNLTLLPTQKPV---PYAEYRAAIIEAGIRVVETAGND-----------------PGE  109 (328)
T ss_dssp             SSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCC---CHHHHHHHHHHTTCCEEEEEESC-----------------CHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEeccccccCc---cHHHHHHHHHhcCCCEEEEcCCC-----------------cHH
Confidence            458888899999988778888776654210 011   13577888899999999998542                 156


Q ss_pred             HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE-eh
Q psy2386         176 FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML-GR  215 (311)
Q Consensus       176 ~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi-gR  215 (311)
                      +++++++.  ++||+.  ++.|++++....+. +|+|.+ |+
T Consensus       110 ~~~~l~~~--gi~vi~--~v~t~~~a~~~~~~GaD~i~v~g~  147 (328)
T 2gjl_A          110 HIAEFRRH--GVKVIH--KCTAVRHALKAERLGVDAVSIDGF  147 (328)
T ss_dssp             HHHHHHHT--TCEEEE--EESSHHHHHHHHHTTCSEEEEECT
T ss_pred             HHHHHHHc--CCCEEe--eCCCHHHHHHHHHcCCCEEEEECC
Confidence            78888775  689884  48999999988776 999998 54

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.65  E-value=0.055  Score=52.84  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|++.|.+..-..    .+        ..-++.++++++.+|++||++ |+|.|.++++.+.+. +|+|.
T Consensus       257 ~~era~aLveaGvd~I~Id~a~g----~~--------~~v~~~i~~i~~~~~~~~vi~-g~v~t~e~a~~~~~aGad~i~  323 (511)
T 3usb_A          257 AMTRIDALVKASVDAIVLDTAHG----HS--------QGVIDKVKEVRAKYPSLNIIA-GNVATAEATKALIEAGANVVK  323 (511)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCT----TS--------HHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHhhccceEEeccccc----ch--------hhhhhHHHHHHHhCCCceEEe-eeeccHHHHHHHHHhCCCEEE
Confidence            36778899999999999974321    00        013578999999987788874 789999999999987 99999


Q ss_pred             Eeh
Q psy2386         213 LGR  215 (311)
Q Consensus       213 igR  215 (311)
                      +|-
T Consensus       324 vg~  326 (511)
T 3usb_A          324 VGI  326 (511)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            854

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=95.64  E-value=0.049  Score=49.50  Aligned_cols=84  Identities=7%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-..+.-.++++.+++.+  .+||.+-+-.  .   +.+
T Consensus        22 iD~~~l~~lv~~li~~Gv~gl~v~----------GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~--~---~t~   86 (300)
T 3eb2_A           22 VRADVMGRLCDDLIQAGVHGLTPL----------GSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVAS--T---SVA   86 (300)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCBBTT----------SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEE--S---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCC--C---CHH
Confidence            478889999998889999998766          1223333334444466677766655  5788886543  1   233


Q ss_pred             HHHHHHHHHHHcCCCEEEEec
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~  153 (311)
                      +.+++++.+++.|+|++.+..
T Consensus        87 ~ai~la~~a~~~Gadavlv~~  107 (300)
T 3eb2_A           87 DAVAQAKLYEKLGADGILAIL  107 (300)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEcC
Confidence            678999999999999998753

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=95.62  E-value=0.12  Score=46.93  Aligned_cols=126  Identities=12%  Similarity=0.101  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+   .+||.+-+  |-.   +.
T Consensus        25 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGv--g~~---~t   89 (301)
T 3m5v_A           25 VDEQSYARLIKRQIENGIDAVVPVG----------TTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGA--GSN---AT   89 (301)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEECSS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEEC--CCS---SH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeC--CCC---CH
Confidence            4788899999998899999998872          223333334555566777766655   36877743  322   23


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      .+.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++.+++ ++||+ +|     |---+++.+.++.
T Consensus        90 ~~ai~la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  159 (301)
T 3m5v_A           90 HEAVGLAKFAKEHGADGILSVAPY--YNKPT-------QQGLYEHYKAIAQSV-DIPVLLYNVPGRTGCEISTDTIIKLF  159 (301)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEeCchhhCcCCCHHHHHHHH
Confidence            468899999999999999876432  11100       001234556666666 56654 33     3334555555544

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=95.60  E-value=0.4  Score=43.00  Aligned_cols=98  Identities=8%  Similarity=0.037  Sum_probs=61.3

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      ++-+...|.-    .|++++++|+|.| + .|--..++. -|+-..+.-..+.+...+++|++.++.|+.| .-+++-..
T Consensus        36 i~~~tayDa~----sA~l~e~aG~d~i-l-vGdSl~~~~-lG~~dt~~vTldemi~h~~aV~r~~~~~~vv-aD~pfgsy  107 (281)
T 1oy0_A           36 WAMLTAYDYS----TARIFDEAGIPVL-L-VGDSAANVV-YGYDTTVPISIDELIPLVRGVVRGAPHALVV-ADLPFGSY  107 (281)
T ss_dssp             EEEEECCSHH----HHHHHHTTTCCEE-E-ECTTHHHHT-TCCSSSSSCCGGGTHHHHHHHHHHCTTSEEE-EECCTTSS
T ss_pred             EEEEeCcCHH----HHHHHHHcCCCEE-E-ECHHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhcCCCCeEE-EECCCCcc
Confidence            4556666754    5788889999999 4 354433332 2444555556677777788888888766554 45544222


Q ss_pred             -CcHHHHHH-HHHHHHHcCCCEEEEecC
Q psy2386         129 -NSYDFVRD-FVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       129 -~~~~~~~e-~~~~l~~~G~~~itvh~R  154 (311)
                       .+.+...+ ..+.++++|+++|.+-+.
T Consensus       108 ~~s~~~a~~na~rl~~eaGa~aVklEdg  135 (281)
T 1oy0_A          108 EAGPTAALAAATRFLKDGGAHAVKLEGG  135 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSEEEEEBS
T ss_pred             cCCHHHHHHHHHHHHHHhCCeEEEECCc
Confidence             12333444 445556699999999765

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=95.59  E-value=0.67  Score=41.08  Aligned_cols=141  Identities=11%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             CCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--c--ceeEE
Q psy2386          45 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--E--IDITV  119 (311)
Q Consensus        45 ~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~--~pvsv  119 (311)
                      +.+++.=+--. -|+..+.+++.+.++|+|.+.+|...           +     ++-+...+++..+..  +  .|-.+
T Consensus        56 g~~VflDlK~~DIpnTv~~a~~~~~~~gad~vTVh~~~-----------G-----~~~~~aa~~~~~~~~~~g~~~~~li  119 (259)
T 3tfx_A           56 GYKIFLDLKMHDIPNTVYNGAKALAKLGITFTTVHALG-----------G-----SQMIKSAKDGLIAGTPAGHSVPKLL  119 (259)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGG-----------C-----HHHHHHHHHHHHHHSCTTSCCCEEE
T ss_pred             CCcEEEEecccccchHHHHHHHHHHhcCCCEEEEcCCC-----------C-----HHHHHHHHHHHHHhcccCCCCceEE
Confidence            56677666544 47777888888889999999999322           1     233444444443211  1  23122


Q ss_pred             EEe--ccCC----------CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         120 KHR--IGID----------DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       120 KiR--~g~~----------~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      -+.  ...+          ..+-.+...++++...++|++.+++.+.                  .   +..+++.+++-
T Consensus       120 ~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G~dGvV~s~~------------------e---~~~ir~~~~~~  178 (259)
T 3tfx_A          120 AVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSGADGVICSPL------------------E---VKKLHENIGDD  178 (259)
T ss_dssp             EECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTTCCEEECCGG------------------G---HHHHHHHHCSS
T ss_pred             EEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCEEEECHH------------------H---HHHHHhhcCCc
Confidence            111  1111          1111234457788888999999977532                  1   34455544334


Q ss_pred             eEEEecCCCCHH----H------HHHHHhh-cCEEEEehhhhhCCc
Q psy2386         188 EIIINGGIKTKK----E------IDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       188 pvi~nGgI~s~~----d------a~~~l~~-adgVmigRa~l~~P~  222 (311)
                      .++...||+-.-    |      ..++++. +|.+.+||+++..+.
T Consensus       179 f~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~d  224 (259)
T 3tfx_A          179 FLYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASD  224 (259)
T ss_dssp             SEEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSS
T ss_pred             cEEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCC
Confidence            467778886421    1      4445554 999999999977554

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=95.57  E-value=0.059  Score=48.71  Aligned_cols=126  Identities=12%  Similarity=0.021  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-+.+.-.++++.+++.+  .+||.+-+  |-.   +..
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~~---~t~   83 (292)
T 2ojp_A           19 VCRASLKKLIDYHVASGTSAIVSVG----------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGT--GAN---ATA   83 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccchhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCc---cHH
Confidence            4788899999988888999998872          233333344555566777776655  47887644  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.+++++++ ++||+ +|    .|+ -+++.+.++.
T Consensus        84 ~ai~la~~a~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  152 (292)
T 2ojp_A           84 EAISLTQRFNDSGIVGCLTVTPY--YNRPS-------QEGLYQHFKAIAEHT-DLPQILYNVPSRTGCDLLPETVGRLA  152 (292)
T ss_dssp             HHHHHHHHTTTSSCSEEEEECCC--SSCCC-------HHHHHHHHHHHHTTC-SSCEEEECCHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCcchhccCCCHHHHHHHH
Confidence            67899999999999999876432  11100       001234556666666 57764 44    233 4566665553

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=95.55  E-value=0.13  Score=46.53  Aligned_cols=126  Identities=12%  Similarity=0.024  Sum_probs=78.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +.+
T Consensus        18 iD~~~l~~lv~~li~~Gv~gl~~~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~   82 (294)
T 2ehh_A           18 VDYEALGNLIEFHVDNGTDAILVCG----------TTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGT--GGN---ATH   82 (294)
T ss_dssp             ECHHHHHHHHHHHHTTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CCS---CHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCC---CHH
Confidence            3778898889988889999998872          223333334555566777766655  47877644  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.+++++++ ++||+ +|     |---+++.+.++.
T Consensus        83 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  151 (294)
T 2ehh_A           83 EAVHLTAHAKEVGADGALVVVPY--YNKPT-------QRGLYEHFKTVAQEV-DIPIIIYNIPSRTCVEISVDTMFKLA  151 (294)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCCcccCcCCCHHHHHHHH
Confidence            67899999999999999876432  11110       001234566677776 67764 45     3234666666654

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=95.53  E-value=0.041  Score=50.02  Aligned_cols=70  Identities=21%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH-HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN-FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~-~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      ++...++|+|+|-++.-+               +.+.. .++.+....|++||.++||| +++.+.++.+. +|++.+|+
T Consensus       210 ~~~A~~aGaD~I~ld~~~---------------~~~l~~~v~~l~~~~~~~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs  273 (299)
T 2jbm_A          210 AVQAAEAGADLVLLDNFK---------------PEELHPTATVLKAQFPSVAVEASGGI-TLDNLPQFCGPHIDVISMGM  273 (299)
T ss_dssp             HHHHHHTTCSEEEEESCC---------------HHHHHHHHHHHHHHCTTSEEEEESSC-CTTTHHHHCCTTCCEEECTH
T ss_pred             HHHHHHcCCCEEEECCCC---------------HHHHHHHHHHhhccCCCeeEEEECCC-CHHHHHHHHHCCCCEEEECh
Confidence            444457899999886421               11222 23334444567999999999 99999999987 99999999


Q ss_pred             hhhhCCcc
Q psy2386         216 EAYKNPFL  223 (311)
Q Consensus       216 a~l~~P~i  223 (311)
                      ....-|++
T Consensus       274 ~i~~a~~~  281 (299)
T 2jbm_A          274 LTQAAPAL  281 (299)
T ss_dssp             HHHSCCCC
T ss_pred             hhcCCCCc
Confidence            77665654

>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*

Probab=95.50  E-value=0.045  Score=51.64  Aligned_cols=128  Identities=9%  Similarity=0.047  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      ++++++.|+...+.||..|-+..|.+....       .-..+++.-.+.++++|+++  ++++.|-..-+|+.    ++.
T Consensus       149 ~e~~~~~a~~~~~~Gf~~~KlKvg~~~~~~-------~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~w~~----~~A  217 (392)
T 3v5c_A          149 VALMQEEAMQGYAKGQRHFKIKVGRGGRHM-------PLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNL----NLT  217 (392)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEECCTTTTTS-------CHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCH----HHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCCCCCccc-------cccccHHHHHHHHHHHHHHcCCCCcEEeeCCCCcCH----HHH
Confidence            567777777777889999999887542100       00012455667788888875  56777777777764    356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-----CCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-----FPELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-----~~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      .++++.+++.++.+|               ++. .+ .|++..+++++.     . .+||...=.+. ..++.++++.  
T Consensus       218 ~~~~~~L~~~~l~~i---------------EeP-~~-~d~~~~~~l~~~~~~~~~-~ipIa~gE~~~-~~~~~~li~~~a  278 (392)
T 3v5c_A          218 KEVLAALSDVNLYWL---------------EAA-FH-EDEALYEDLKEWLGQRGQ-NVLIADGEGLA-SPHLIEWATRGR  278 (392)
T ss_dssp             HHHHHHTTTSCCCEE---------------ECS-SS-CCHHHHHHHHHHHHHHTC-CCEEEECCSSC-CTTHHHHHHTTS
T ss_pred             HHHHHhcccCCCeEE---------------eCC-CC-cCHHHHHHHHHhhccCCC-CCcEECCCccc-HHHHHHHHHcCC
Confidence            789999999888877               121 12 367777888764     4 58876666667 7888888865  


Q ss_pred             cCEEEEe
Q psy2386         208 IDGVMLG  214 (311)
Q Consensus       208 adgVmig  214 (311)
                      +|.|++=
T Consensus       279 ~dii~~d  285 (392)
T 3v5c_A          279 VDVLQYD  285 (392)
T ss_dssp             CCEECCB
T ss_pred             CcEEEeC
Confidence            8888774

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=95.48  E-value=0.1  Score=47.52  Aligned_cols=129  Identities=8%  Similarity=0.047  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +.-|-+..-..+.-.++++.+.+.+  .+||.+-+-.  .   +..
T Consensus        26 iD~~~l~~lv~~li~~Gv~gl~v~----------GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~--~---~t~   90 (309)
T 3fkr_A           26 LDLASQKRAVDFMIDAGSDGLCIL----------ANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSH--Y---STQ   90 (309)
T ss_dssp             BCHHHHHHHHHHHHHTTCSCEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCC--S---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC--c---hHH
Confidence            478889999999989999999886          2234434344555566777776655  5788875432  2   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCCCCHHHHHHHHh
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGIKTKKEIDLHLN  206 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI~s~~da~~~l~  206 (311)
                      +.+++++.+++.|+|++.+..-.  |.. +.+.     ...-+++.+++++++ ++||+ +|    |---+++.+.++.+
T Consensus        91 ~ai~la~~A~~~Gadavlv~~Py--y~~~~~~s-----~~~l~~~f~~va~a~-~lPiilYn~P~tg~~l~~~~~~~La~  162 (309)
T 3fkr_A           91 VCAARSLRAQQLGAAMVMAMPPY--HGATFRVP-----EAQIFEFYARVSDAI-AIPIMVQDAPASGTALSAPFLARMAR  162 (309)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCSC--BTTTBCCC-----HHHHHHHHHHHHHHC-SSCEEEEECGGGCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCC--CccCCCCC-----HHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCCHHHHHHHHh
Confidence            67899999999999999876431  110 0000     001245666777776 67764 44    43355666666653

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=95.47  E-value=0.054  Score=48.93  Aligned_cols=84  Identities=18%  Similarity=0.090  Sum_probs=59.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-+.+.-.++++.+++.+  .+||.+-+-  -.   +.+
T Consensus        19 iD~~~l~~lv~~li~~Gv~gl~~~----------GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg--~~---~t~   83 (291)
T 3a5f_A           19 VDFDKLSELIEWHIKSKTDAIIVC----------GTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTG--SN---NTA   83 (291)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC--CS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCC--cc---cHH
Confidence            477888888998888999999887          2233343344555566777766655  478876443  22   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEec
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~  153 (311)
                      +.+++++.+++.|+|++.+..
T Consensus        84 ~ai~la~~a~~~Gadavlv~~  104 (291)
T 3a5f_A           84 ASIAMSKWAESIGVDGLLVIT  104 (291)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHhcCCCEEEEcC
Confidence            678999999999999998753

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=95.45  E-value=1.1  Score=41.21  Aligned_cols=91  Identities=11%  Similarity=0.045  Sum_probs=61.1

Q ss_pred             cccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC--cHHHHHHHHHhCCCCeE
Q psy2386         112 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL--KYNFVYNLKKDFPELEI  189 (311)
Q Consensus       112 ~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~--~~~~i~~i~~~~~~ipv  189 (311)
                      ..+.|+.+.+..+++.       .++.+.++..|+++|.+|..... ...++..   .+..  -++.++++++.+ ++||
T Consensus       114 ~~~~pv~~~i~~~~~~-------~~~~~~~~~~gad~i~i~~~~~~-~~~~~~~---~~~~~~~~~~i~~vr~~~-~~Pv  181 (349)
T 1p0k_A          114 NPNGLIFANLGSEATA-------AQAKEAVEMIGANALQIHLNVIQ-EIVMPEG---DRSFSGALKRIEQICSRV-SVPV  181 (349)
T ss_dssp             CSSSCEEEEEETTCCH-------HHHHHHHHHTTCSEEEEEECTTT-TC-----------CTTHHHHHHHHHHHC-SSCE
T ss_pred             CCCceeEEeecCCCCH-------HHHHHHHHhcCCCeEEecccchh-hhcCCCC---CcchHHHHHHHHHHHHHc-CCCE
Confidence            3578998887765442       23456678899999999865321 1111100   1111  257899999988 7999


Q ss_pred             EEe--cCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         190 IIN--GGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       190 i~n--GgI~s~~da~~~l~~-adgVmig  214 (311)
                      +.-  |...+++++..+.+. +|+|.+.
T Consensus       182 ~vK~~~~~~~~~~a~~a~~~Gad~I~v~  209 (349)
T 1p0k_A          182 IVKEVGFGMSKASAGKLYEAGAAAVDIG  209 (349)
T ss_dssp             EEEEESSCCCHHHHHHHHHHTCSEEEEE
T ss_pred             EEEecCCCCCHHHHHHHHHcCCCEEEEc
Confidence            875  555789999988876 9999994

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.43  E-value=0.034  Score=54.30  Aligned_cols=69  Identities=17%  Similarity=0.370  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.++.+.++|++.|.+|.-.    |+.        ...++.++++++.+|++||++ |+|.|.++++.+.+. +|+|.
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~----G~~--------~~~~~~i~~i~~~~~~~pvi~-~~v~t~~~a~~l~~aGad~I~  322 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQ----GNS--------VYQIAMVHYIKQKYPHLQVIG-GNVVTAAQAKNLIDAGVDGLR  322 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC----CCS--------HHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred             hHHHHHHHHHcCCCEEEeeccC----Ccc--------hhHHHHHHHHHHhCCCCceEe-cccchHHHHHHHHHcCCCEEE
Confidence            4677888999999999998642    210        124789999999987899986 789999999999876 99999


Q ss_pred             Eeh
Q psy2386         213 LGR  215 (311)
Q Consensus       213 igR  215 (311)
                      +|.
T Consensus       323 vg~  325 (514)
T 1jcn_A          323 VGM  325 (514)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            954

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=95.43  E-value=0.14  Score=46.37  Aligned_cols=170  Identities=12%  Similarity=0.101  Sum_probs=98.7

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      +=+...|+-    .|++++++|||.|=+-- +.-  .+  -|+-....-..+.+...+++|.+.++.||.+-+-.|+-  
T Consensus        18 ~~~~a~D~~----sA~~~~~aG~~ai~vs~~~~a--~~--~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg--   87 (290)
T 2hjp_A           18 TAMAAHNPL----VAKLAEQAGFGGIWGSGFELS--AS--YAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFG--   87 (290)
T ss_dssp             EEEECSSHH----HHHHHHHHTCSEEEECHHHHH--HH--TTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTS--
T ss_pred             EEecCCCHH----HHHHHHHcCCCEEEEChHHHH--Hh--CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC--
Confidence            335555654    46778889999997751 111  11  23333345567788888899999999999999999964  


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCc--HHHHHHHHHhC--CCCeEEEecCCC-C---HH
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILK--YNFVYNLKKDF--PELEIIINGGIK-T---KK  199 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~--~~~i~~i~~~~--~~ipvi~nGgI~-s---~~  199 (311)
                      + .++..+.++.+.++|+++|.+-+... .--|+.|......-|.+  .+.|+.+++..  +++-|++--|-. .   .+
T Consensus        88 ~-~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~  166 (290)
T 2hjp_A           88 N-AVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQ  166 (290)
T ss_dssp             S-HHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHH
T ss_pred             C-HHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHH
Confidence            2 33578889999999999999986642 01122110000011111  22344444442  245566655554 1   34


Q ss_pred             HHH----HHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         200 EID----LHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       200 da~----~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++.    .+.+. ||+|++=-+ ..++..++++.+.+
T Consensus       167 ~ai~Ra~ay~eAGAd~i~~e~~-~~~~~~~~~i~~~~  202 (290)
T 2hjp_A          167 EAVRRGQAYEEAGADAILIHSR-QKTPDEILAFVKSW  202 (290)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCC-CSSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCcEEEeCCC-CCCHHHHHHHHHHc
Confidence            443    33332 999998321 24455666666654

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=95.37  E-value=0.23  Score=43.53  Aligned_cols=138  Identities=12%  Similarity=0.174  Sum_probs=77.0

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc--cc--ce--eEEEE
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS--VE--ID--ITVKH  121 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~--~~--~p--vsvKi  121 (311)
                      +=+-++ ..|+....+++.+.++|+|.|-+|.-..                .+.+.+.++.+++.  .+  .|  +.|..
T Consensus        60 lD~kl~-Dip~t~~~~~~~~~~~Gad~vTvH~~~g----------------~~~l~~~~~~~~~~~~~G~~~~~~lav~~  122 (246)
T 2yyu_A           60 LDLKLH-DIPNTVKQAMKGLARVGADLVNVHAAGG----------------RRMMEAAIEGLDAGTPSGRMRPRCIAVTQ  122 (246)
T ss_dssp             EEEEEC-SCHHHHHHHHHHHHHTTCSEEEEEGGGC----------------HHHHHHHHHHHHHHSCSSSCCCEEEEESS
T ss_pred             EEeecc-cchHHHHHHHHHHHhcCCCEEEEECCCC----------------HHHHHHHHHHHHhhcccCCcCCCEEEEEe
Confidence            335554 6788888888888899999999994221                23345666666652  23  24  32322


Q ss_pred             eccCCC----------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         122 RIGIDD----------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       122 R~g~~~----------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      ....+.          .+..+....++....+.|.+.+...                    -++ ++++++..+..+++.
T Consensus       123 ~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~--------------------~~e-i~~lr~~~~~~~i~V  181 (246)
T 2yyu_A          123 LTSTDERMLHEELWISRPLVETVAHYAALAKESGLDGVVCS--------------------ANE-AAFIKERCGASFLAV  181 (246)
T ss_dssp             CTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCCEEECC--------------------HHH-HHHHHHHHCTTSEEE
T ss_pred             CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCEEEeC--------------------HHH-HHHHHHhcCCCCEEE
Confidence            222100          0000111111221244566654321                    134 667776654345899


Q ss_pred             ecCCCCH-H---------HHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         192 NGGIKTK-K---------EIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       192 nGgI~s~-~---------da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      .|||+.- .         .+.++++. +|.+.+||+++..+..
T Consensus       182 ~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp  224 (246)
T 2yyu_A          182 TPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADP  224 (246)
T ss_dssp             ECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSH
T ss_pred             eCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCH
Confidence            9999742 1         24445544 9999999999886553

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=95.37  E-value=0.2  Score=45.37  Aligned_cols=127  Identities=10%  Similarity=0.113  Sum_probs=83.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +..
T Consensus        29 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGv--g~~---~t~   93 (303)
T 2wkj_A           29 LDKASLRRLVQFNIQQGIDGLYVGG----------STGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHV--GCV---STA   93 (303)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECe----------eccChhhCCHHHHHHHHHHHHHHhCCCCcEEEec--CCC---CHH
Confidence            4788899999988889999998872          233333345555567777776655  47887743  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC-CeEE-Ee----cCC-CCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE-LEII-IN----GGI-KTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~-ipvi-~n----GgI-~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  |...+       ...-+++.++|.+++ + +||+ +|    .|+ -+++.+.++.
T Consensus        94 ~ai~la~~A~~~Gadavlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~~lPiilYn~P~~tg~~l~~~~~~~La  163 (303)
T 2wkj_A           94 ESQQLAASAKRYGFDAVSAVTPF--YYPFS-------FEEHCDHYRAIIDSA-DGLPMVVYNIPALSGVKLTLDQINTLV  163 (303)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-TTCCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEecCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCCEEEEeCccccCCCCCHHHHHHHh
Confidence            67899999999999999876432  11111       001245667788877 5 8875 56    344 5778777775


Q ss_pred             h
Q psy2386         206 N  206 (311)
Q Consensus       206 ~  206 (311)
                      +
T Consensus       164 ~  164 (303)
T 2wkj_A          164 T  164 (303)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=95.36  E-value=0.42  Score=42.95  Aligned_cols=139  Identities=13%  Similarity=0.112  Sum_probs=89.1

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC-
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI-  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~-  125 (311)
                      .+.+-++..+.+....    +++.|+|-|||+-+=...         .|  .|.  ..+++.+++.+++||-|=||+-. 
T Consensus        39 ~~~lEvc~~s~~~a~~----A~~gGAdRIELc~~l~~G---------Gl--TPS--~g~i~~a~~~~~ipV~vMIRPRgG  101 (287)
T 3iwp_A           39 GFLMEVCVDSVESAVN----AERGGADRIELCSGLSEG---------GT--TPS--MGVLQVVKQSVQIPVFVMIRPRGG  101 (287)
T ss_dssp             CSEEEEEESSHHHHHH----HHHHTCSEEEECBCGGGT---------CB--CCC--HHHHHHHHTTCCSCEEEECCSSSS
T ss_pred             CceEEEEeCCHHHHHH----HHHhCCCEEEECCCCCCC---------CC--CCC--HHHHHHHHHhcCCCeEEEEecCCC
Confidence            3678888888886543    457899999998332211         11  122  14456667777899988888621 


Q ss_pred             --C-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC---CCHH
Q psy2386         126 --D-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI---KTKK  199 (311)
Q Consensus       126 --~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI---~s~~  199 (311)
                        . ++.+.+...+-++.+.++|+|.|+++.-+.  .          +..|.+..+++.+....++|..+=-+   .++.
T Consensus       102 dF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~--d----------g~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~  169 (287)
T 3iwp_A          102 DFLYSDREIEVMKADIRLAKLYGADGLVFGALTE--D----------GHIDKELCMSLMAICRPLPVTFHRAFDMVHDPM  169 (287)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCT--T----------SCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHH
T ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCC--C----------CCcCHHHHHHHHHHcCCCcEEEECchhccCCHH
Confidence              1 122344555667888899999999986542  1          12688888877665435788777543   3566


Q ss_pred             HHHHHHhh--cCEEEEe
Q psy2386         200 EIDLHLNY--IDGVMLG  214 (311)
Q Consensus       200 da~~~l~~--adgVmig  214 (311)
                      .+.+.+..  +|.|..+
T Consensus       170 ~Ale~Li~lGvdrILTS  186 (287)
T 3iwp_A          170 AALETLLTLGFERVLTS  186 (287)
T ss_dssp             HHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHcCCCEEECC
Confidence            66655543  7777763

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=95.36  E-value=0.18  Score=45.79  Aligned_cols=126  Identities=16%  Similarity=0.117  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          .-|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +.+
T Consensus        34 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---st~   98 (304)
T 3cpr_A           34 IDIAAGREVAAYLVDKGLDSLVLAG----------TTGESPTTTAAEKLELLKAVREEVGDRAKLIAGV--GTN---NTR   98 (304)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC--CCS---CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEecC--CCC---CHH
Confidence            4788899999998899999998872          223333334555566777776655  47877644  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.  +...+       ...-+++.++|+++. ++||+ +|    -|+ -+++.+.++.
T Consensus        99 ~ai~la~~A~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  167 (304)
T 3cpr_A           99 TSVELAEAAASAGADGLLVVTPY--YSKPS-------QEGLLAHFGAIAAAT-EVPICLYDIPGRSGIPIESDTMRRLS  167 (304)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSSCCCHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeCccccCcCCCHHHHHHHH
Confidence            67899999999999999876332  11100       001245566777776 67764 45    233 4666666553

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=95.31  E-value=0.19  Score=46.08  Aligned_cols=91  Identities=16%  Similarity=0.232  Sum_probs=70.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++.+.+.++.+++.++.|+.|.+-. ++.     ...+.++.+.+.|++.|.+|+..                 ..+++
T Consensus        61 ~~~~l~~~i~~i~~~~~~p~gVnl~~-~~~-----~~~~~~~~~~~~g~d~V~l~~g~-----------------p~~~~  117 (326)
T 3bo9_A           61 KPDDLRKAISELRQKTDKPFGVNIIL-VSP-----WADDLVKVCIEEKVPVVTFGAGN-----------------PTKYI  117 (326)
T ss_dssp             CHHHHHHHHHHHHTTCSSCEEEEEET-TST-----THHHHHHHHHHTTCSEEEEESSC-----------------CHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEEec-cCC-----CHHHHHHHHHHCCCCEEEECCCC-----------------cHHHH
Confidence            68889999999999888899887654 222     13577888899999999998653                 13567


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE-eh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML-GR  215 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi-gR  215 (311)
                      +++++.  .++|+.  .|.+.+++..+.+. +|+|.+ |+
T Consensus       118 ~~l~~~--g~~v~~--~v~s~~~a~~a~~~GaD~i~v~g~  153 (326)
T 3bo9_A          118 RELKEN--GTKVIP--VVASDSLARMVERAGADAVIAEGM  153 (326)
T ss_dssp             HHHHHT--TCEEEE--EESSHHHHHHHHHTTCSCEEEECT
T ss_pred             HHHHHc--CCcEEE--EcCCHHHHHHHHHcCCCEEEEECC
Confidence            777764  688875  68999999988876 999999 53

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=95.30  E-value=0.13  Score=46.33  Aligned_cols=126  Identities=10%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-++.+.+ .|+|+|=++          +..|-+..-..+.-.++++.+++.+  .+||.+-+  |-..   .
T Consensus        21 iD~~~l~~lv~~li~~~Gv~gl~~~----------GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~~---t   85 (293)
T 1f6k_A           21 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV--GSVN---L   85 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEC--CCSC---H
T ss_pred             cCHHHHHHHHHHHHhhCCCcEEEeC----------ccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEec--CCCC---H
Confidence            477889999998888 999999887          2234434445555567777776655  47877644  3222   3


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~l  205 (311)
                      ++.+++++.+++.|+|++.+..-.  |...+       ...-+++.+++++++ ++||+ +|    .|+ -+++.+.++.
T Consensus        86 ~~ai~la~~a~~~Gadavlv~~P~--y~~~~-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  155 (293)
T 1f6k_A           86 KEAVELGKYATELGYDCLSAVTPF--YYKFS-------FPEIKHYYDTIIAET-GSNMIVYSIPFLTGVNMGIEQFGELY  155 (293)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHHH-CCCEEEEECHHHHCCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEECccccCcCCCHHHHHHHh
Confidence            467899999999999999876432  11111       001245566667666 57764 45    233 4666666654

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=95.29  E-value=0.57  Score=44.49  Aligned_cols=155  Identities=9%  Similarity=0.036  Sum_probs=94.4

Q ss_pred             CCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeE
Q psy2386          45 EHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDIT  118 (311)
Q Consensus        45 ~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvs  118 (311)
                      ..|+++=+=   |+.+ ...+.++.+.++|+.+|.|-=..+.+|.+..-.|-.|....+.+.+| ++++.+   .+.++.
T Consensus       148 ~~PIiaD~DtGfG~~~-nv~~tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI-~AAr~A~~~~g~d~v  225 (429)
T 1f8m_A          148 LAPIVADGEAGFGGAL-NVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTL-TSARLAADVADVPTV  225 (429)
T ss_dssp             SCCEEEECTTTTSSHH-HHHHHHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHH-HHHHHHHHHTTCCCE
T ss_pred             CCCEEEECCCCCCCcH-HHHHHHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHH-HHHHHHHHhcCCCEE
Confidence            379998874   4444 68888999999999999998666555544332333444434444444 444443   367777


Q ss_pred             EEEeccCCC----------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386         119 VKHRIGIDD----------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus       119 vKiR~g~~~----------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      |=-|..-..                            ....++.++-++.+.+ |+|.|-+++..               
T Consensus       226 IiARTDa~~a~li~s~~d~~d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e~~~---------------  289 (429)
T 1f8m_A          226 VIARTDAEAATLITSDVDERDQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWMETGT---------------  289 (429)
T ss_dssp             EEEEECTTTCCEESCCCSTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEECCSS---------------
T ss_pred             EEEEechhhhccccccccccccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeCCCC---------------
Confidence            777764311                            1235667778888877 99999998643               


Q ss_pred             cCcHHHHHHHHHhC----CCCeEEEecC-CCC------HHHHHHHHhh-----cCEEEEehhhh
Q psy2386         171 ILKYNFVYNLKKDF----PELEIIINGG-IKT------KKEIDLHLNY-----IDGVMLGREAY  218 (311)
Q Consensus       171 ~~~~~~i~~i~~~~----~~ipvi~nGg-I~s------~~da~~~l~~-----adgVmigRa~l  218 (311)
                       .+.+.++++.+.+    |..++.+|+- ..+      .+++..+.+.     ...+.++-+.+
T Consensus       290 -~~~eei~~f~~~v~~~~P~~~La~n~sPsf~w~~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~  352 (429)
T 1f8m_A          290 -PDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWKKHLDDATIAKFQKELAAMGFKFQFITLAGF  352 (429)
T ss_dssp             -CCHHHHHHHHHHHHTTCTTCEEEEECCTTSCHHHHCCHHHHHHHHHHHHHHTEEEEEETTHHH
T ss_pred             -CCHHHHHHHHHHhcccCCCceeecCCCCCCCcccccchhhHhHHHHHHHHcCCeEEEECcHHH
Confidence             2667777777655    3223444542 233      3444443322     66677765543

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=95.28  E-value=0.13  Score=46.37  Aligned_cols=66  Identities=9%  Similarity=0.089  Sum_probs=48.8

Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      ++.+.++|+|+|.++.-+.                  +.++++.+.+ +++|+.+.|||+ ++.+.++.+. +|+|.+|.
T Consensus       209 a~eA~~aGaD~I~ld~~~~------------------~~~k~av~~v~~~ipi~AsGGIt-~eni~~~a~tGvD~IsVgs  269 (286)
T 1x1o_A          209 LEEALEAGADLILLDNFPL------------------EALREAVRRVGGRVPLEASGNMT-LERAKAAAEAGVDYVSVGA  269 (286)
T ss_dssp             HHHHHHHTCSEEEEESCCH------------------HHHHHHHHHHTTSSCEEEESSCC-HHHHHHHHHHTCSEEECTH
T ss_pred             HHHHHHcCCCEEEECCCCH------------------HHHHHHHHHhCCCCeEEEEcCCC-HHHHHHHHHcCCCEEEEcH
Confidence            4556688999998876532                  2333433332 268999999995 8999999987 99999998


Q ss_pred             hhhhCCc
Q psy2386         216 EAYKNPF  222 (311)
Q Consensus       216 a~l~~P~  222 (311)
                      ....-|+
T Consensus       270 ~~~~a~~  276 (286)
T 1x1o_A          270 LTHSAKA  276 (286)
T ss_dssp             HHHSCCC
T ss_pred             HHcCCCc
Confidence            7766565

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=95.27  E-value=0.17  Score=44.97  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=71.7

Q ss_pred             CCC-eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEe
Q psy2386          45 EHP-IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR  122 (311)
Q Consensus        45 ~~p-~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR  122 (311)
                      ++| ++|-|.|.+.+++.+.|+.+.+.|+|.||+=+=+=..           ..+++.+.+.+..+++.. ++|+.+-+|
T Consensus        18 g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~~-----------~~~~~~v~~~l~~lr~~~~~lPiI~T~R   86 (258)
T 4h3d_A           18 GRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFEN-----------VENIKEVKEVLYELRSYIHDIPLLFTFR   86 (258)
T ss_dssp             SSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCTT-----------TTCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            456 8899999999999998888888999999995322100           135678889999998876 699999999


Q ss_pred             ccCCCCC---cHHHHHHHHHHHHHcC-CCEEEEe
Q psy2386         123 IGIDDIN---SYDFVRDFVGTVSSAG-CRTFIVH  152 (311)
Q Consensus       123 ~g~~~~~---~~~~~~e~~~~l~~~G-~~~itvh  152 (311)
                      .-|+.+.   +.++..++.+.+.+.| +++|-|.
T Consensus        87 t~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvE  120 (258)
T 4h3d_A           87 SVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVE  120 (258)
T ss_dssp             CGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             chhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHh
Confidence            8554321   2234566777777776 8999875

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.25  E-value=0.12  Score=46.88  Aligned_cols=55  Identities=9%  Similarity=0.079  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh---ccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR---DSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~---~~~~~pvsvKiR  122 (311)
                      +++...+-|+...+.|+|.||||+|.+            .....+.+.+++..++   +.+++|++|-..
T Consensus        35 ~~~~a~~~A~~~v~~GAdiIDIg~g~~------------~v~~~eem~rvv~~i~~~~~~~~vpisIDT~   92 (300)
T 3k13_A           35 KYDEALSIARQQVEDGALVIDVNMDDG------------LLDARTEMTTFLNLIMSEPEIARVPVMIDSS   92 (300)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCCT------------TSCHHHHHHHHHHHHHTCHHHHTSCEEEECS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCC------------CCCHHHHHHHHHHHHHHhhhcCCCeEEEeCC
Confidence            456666667767788999999997532            2333455566666554   456899999643

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=95.25  E-value=0.11  Score=44.54  Aligned_cols=99  Identities=16%  Similarity=0.191  Sum_probs=61.8

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC-cCcHHHHHHHH
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP-ILKYNFVYNLK  181 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~-~~~~~~i~~i~  181 (311)
                      +.++++++.+++|+...++..+.+..- .....+.++.+.++|++.+++|....           ..+ ....+.+++++
T Consensus        46 ~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~-----------~~p~~~~~~~i~~~~  114 (223)
T 1y0e_A           46 EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQ-----------QRPKETLDELVSYIR  114 (223)
T ss_dssp             HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCS-----------CCSSSCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCCEEEEeeecc-----------cCcccCHHHHHHHHH
Confidence            345566666788983322322211000 00013456777899999999996532           001 01257888999


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +.+|+++++.  ++.|++++.++.+. +|.|+++-
T Consensus       115 ~~~~~~~v~~--~~~t~~e~~~~~~~G~d~i~~~~  147 (223)
T 1y0e_A          115 THAPNVEIMA--DIATVEEAKNAARLGFDYIGTTL  147 (223)
T ss_dssp             HHCTTSEEEE--ECSSHHHHHHHHHTTCSEEECTT
T ss_pred             HhCCCceEEe--cCCCHHHHHHHHHcCCCEEEeCC
Confidence            8876777765  67899999887765 99998753

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=95.25  E-value=0.79  Score=40.04  Aligned_cols=137  Identities=13%  Similarity=0.201  Sum_probs=77.2

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc--e--eEEEEec
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI--D--ITVKHRI  123 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~--p--vsvKiR~  123 (311)
                      +=+-++ ..|+....+++.+.++|+|.|-+|.-..                ++-+...++.+++. +.  |  +.|....
T Consensus        70 lD~kl~-Dip~t~~~~i~~~~~~Gad~vTvH~~~g----------------~~~l~~~~~~~~~~-G~~~~~~l~v~~~t  131 (245)
T 1eix_A           70 LDLKFH-DIPNTAAHAVAAAADLGVWMVNVHASGG----------------ARMMTAAREALVPF-GKDAPLLIAVTVLT  131 (245)
T ss_dssp             EEEEEC-SCHHHHHHHHHHHHHHTCSEEEEBGGGC----------------HHHHHHHHHTTGGG-GGGCCEEEEECSCT
T ss_pred             EEeecc-ccHHHHHHHHHHHHhCCCCEEEEeccCC----------------HHHHHHHHHHHHHc-CCCCCcEEEEEecC
Confidence            345665 6788877788888899999999994221                22345666666553 32  3  1232222


Q ss_pred             cCCC---------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         124 GIDD---------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       124 g~~~---------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      ..+.         .+..+....++....+.|.+.+...+                    ++ ++++++..++.+++..||
T Consensus       132 s~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~g~V~~~--------------------~e-i~~lr~~~~~~~i~v~gG  190 (245)
T 1eix_A          132 SMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSA--------------------QE-AVRFKQVFGQEFKLVTPG  190 (245)
T ss_dssp             TCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCG--------------------GG-HHHHHHHHCSSSEEEECC
T ss_pred             CCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCCeEEeCH--------------------HH-HHHHHHhcCCCCEEEECC
Confidence            1100         00011111122213345666543321                    23 666666554468999999


Q ss_pred             CCCHH----------HHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         195 IKTKK----------EIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       195 I~s~~----------da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      |+.--          .+.++++. +|.+.+||+++..+..
T Consensus       191 I~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp  230 (245)
T 1eix_A          191 IRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDP  230 (245)
T ss_dssp             BCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSH
T ss_pred             cCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCH
Confidence            98420          34555555 9999999999886653

>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1

Probab=95.23  E-value=0.095  Score=47.92  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=84.0

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~  128 (311)
                      ..+.+.+|+.+.+.++...+.||..+-+..|-              -.+    .+.++++++.+ ++.+.+-..-+|+..
T Consensus       126 ~~~~~~~~e~~~~~a~~~~~~G~~~~KiKvg~--------------~~d----~~~v~avr~~~~~~~l~vDaN~~~~~~  187 (324)
T 1jpd_X          126 QTVVIGTPDQMANSASTLWQAGAKLLKVKLDN--------------HLI----SERMVAIRTAVPDATLIVDANESWRAE  187 (324)
T ss_dssp             EEECSCCHHHHHHHHHHHHHTTCSEEEEECCS--------------SCH----HHHHHHHHHHCTTSEEEEECTTCCCST
T ss_pred             EEeeCCCHHHHHHHHHHHHHcCCCEEEEEeCC--------------chH----HHHHHHHHHhCCCCEEEEECcCCCCHH
Confidence            34566789999888887778899999987551              012    34566777765 445555555567653


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhc
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYI  208 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~a  208 (311)
                          +..++++.+++.++.+|-        +       . .++-|++..++++  . .+||.+.=.+.+..++.++++.+
T Consensus       188 ----~a~~~~~~l~~~~i~~iE--------q-------P-~~~~d~~~~~~l~--~-~ipIa~dE~~~~~~~~~~~~~~~  244 (324)
T 1jpd_X          188 ----GLAARCQLLADLGVAMLE--------Q-------P-LPAQDDAALENFI--H-PLPICADESCHTRSNLKALKGRY  244 (324)
T ss_dssp             ----THHHHHHHHHHTTCCEEE--------C-------C-SCTTSCGGGGSSC--C-SSCEEESTTCSSGGGHHHHBTTB
T ss_pred             ----HHHHHHHHHHhCCCCEEE--------C-------C-CCCCCHHHHHhcc--C-CCCEEEcCCCCCHHHHHHHHhhC
Confidence                357899999999888872        1       0 1112444333332  3 58988888889999999988668


Q ss_pred             CEEEEe
Q psy2386         209 DGVMLG  214 (311)
Q Consensus       209 dgVmig  214 (311)
                      |.|++=
T Consensus       245 ~~i~ik  250 (324)
T 1jpd_X          245 EMVNIK  250 (324)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            877774

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=95.23  E-value=0.42  Score=41.43  Aligned_cols=130  Identities=8%  Similarity=-0.009  Sum_probs=81.5

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      -++++|...-....+.++.+.+.++||++||+.... .+          .-.+++.+.++.+.+.+ .++.++.=.-. .
T Consensus        18 ~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~-~~----------~~~~~~~~~~~~~~l~~-~gl~i~~~~~~-~   84 (257)
T 3lmz_A           18 FHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKDFH-LP----------LNSTDEQIRAFHDKCAA-HKVTGYAVGPI-Y   84 (257)
T ss_dssp             SEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTT-SC----------TTCCHHHHHHHHHHHHH-TTCEEEEEEEE-E
T ss_pred             eEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEeccc-CC----------CCCCHHHHHHHHHHHHH-cCCeEEEEecc-c
Confidence            456777665544467778888899999999998541 00          11246666777666655 36655432111 1


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE-ec-----CCCCHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII-NG-----GIKTKK  199 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~-nG-----gI~s~~  199 (311)
                      .  ...+.+.+.++.+.+.|+..|++|+..                ..|+.+.++.+.. .+.+.. |-     -+.|++
T Consensus        85 ~--~~~~~~~~~i~~A~~lGa~~v~~~p~~----------------~~l~~l~~~a~~~-gv~l~lEn~~~~~~~~~~~~  145 (257)
T 3lmz_A           85 M--KSEEEIDRAFDYAKRVGVKLIVGVPNY----------------ELLPYVDKKVKEY-DFHYAIHLHGPDIKTYPDAT  145 (257)
T ss_dssp             E--CSHHHHHHHHHHHHHHTCSEEEEEECG----------------GGHHHHHHHHHHH-TCEEEEECCCTTCSSSCSHH
T ss_pred             c--CCHHHHHHHHHHHHHhCCCEEEecCCH----------------HHHHHHHHHHHHc-CCEEEEecCCCcccccCCHH
Confidence            1  234456778888899999999998532                2566666666654 455432 21     246788


Q ss_pred             HHHHHHhh
Q psy2386         200 EIDLHLNY  207 (311)
Q Consensus       200 da~~~l~~  207 (311)
                      ++.++++.
T Consensus       146 ~~~~ll~~  153 (257)
T 3lmz_A          146 DVWVHTKD  153 (257)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            88888753

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=95.21  E-value=0.52  Score=40.83  Aligned_cols=135  Identities=10%  Similarity=0.052  Sum_probs=81.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccC---cccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGA---ILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~---~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ++.+|...-....+.++.+.+.++||++|||...-|...    ++..   ....+++.+.++.+.+++ .++.++.=.- 
T Consensus        11 klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~-   84 (262)
T 3p6l_A           11 RLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGG----KWGDKVFDFNLDAQTQKEIKELAAS-KGIKIVGTGV-   84 (262)
T ss_dssp             EEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCG----GGTTCEESTTCCHHHHHHHHHHHHH-TTCEEEEEEE-
T ss_pred             EEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCccccc----ccccccccccCCHHHHHHHHHHHHH-cCCeEEEEec-
Confidence            466776655444678888889999999999986543211    1111   112346667777666655 3665543222 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---c-C-CCCH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---G-G-IKTK  198 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---G-g-I~s~  198 (311)
                      ..+..  .+.+...++.+.+.|+..|++|+..                ..|+.+.++++.. .+.+..-   + - ..|+
T Consensus        85 ~~~~~--~~~~~~~i~~A~~lGa~~v~~~~~~----------------~~~~~l~~~a~~~-gv~l~~En~~~~~~~~~~  145 (262)
T 3p6l_A           85 YVAEK--SSDWEKMFKFAKAMDLEFITCEPAL----------------SDWDLVEKLSKQY-NIKISVHNHPQPSDYWKP  145 (262)
T ss_dssp             ECCSS--TTHHHHHHHHHHHTTCSEEEECCCG----------------GGHHHHHHHHHHH-TCEEEEECCSSSSSSSSH
T ss_pred             cCCcc--HHHHHHHHHHHHHcCCCEEEecCCH----------------HHHHHHHHHHHHh-CCEEEEEeCCCccccCCH
Confidence            12211  2246777888899999999998532                2466666666654 4444321   1 1 2477


Q ss_pred             HHHHHHHh
Q psy2386         199 KEIDLHLN  206 (311)
Q Consensus       199 ~da~~~l~  206 (311)
                      +++.++++
T Consensus       146 ~~~~~ll~  153 (262)
T 3p6l_A          146 ENLLKAIS  153 (262)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            78877775

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=95.20  E-value=0.48  Score=41.93  Aligned_cols=146  Identities=15%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             CCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccce----eE
Q psy2386          45 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEID----IT  118 (311)
Q Consensus        45 ~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~p----vs  118 (311)
                      +.+++.=+-=. -|+..+.+++.+.++|+|.|.+|..           |+     ++-+...++...+. .+.|    |+
T Consensus        78 g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~~-----------~G-----~~~~~~a~~~~~~~g~~~~~li~Vt  141 (255)
T 3ldv_A           78 GFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHAS-----------GG-----ERMMAASREILEPYGKERPLLIGVT  141 (255)
T ss_dssp             TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGG-----------GC-----HHHHHHHHHHHGGGGGGSCEEEEEC
T ss_pred             CCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEecc-----------CC-----HHHHHHHHHHHhhcCCCCceEEEEE
Confidence            56677666544 4677777888888999999999932           22     23344444444332 1222    33


Q ss_pred             EEEecc---CC----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         119 VKHRIG---ID----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       119 vKiR~g---~~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      +-+...   |.    .....+....+++...++|++.+.+.+.                     .+..+++.++.-.++.
T Consensus       142 vLTS~s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~~GvV~sa~---------------------e~~~iR~~~g~~fl~V  200 (255)
T 3ldv_A          142 VLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQ---------------------EASLLKQHLGREFKLV  200 (255)
T ss_dssp             SCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEECCHH---------------------HHHHHHHHHCTTSEEE
T ss_pred             EEecCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECHH---------------------HHHHHHHhcCCCcEEE
Confidence            322221   00    0111233556777777889999876432                     2455555543333556


Q ss_pred             ecCCCCHH-H---------HHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         192 NGGIKTKK-E---------IDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       192 nGgI~s~~-d---------a~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      ..||+-.. +         ..++++. +|.+.+||+++..+.....+
T Consensus       201 tPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~  247 (255)
T 3ldv_A          201 TPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVL  247 (255)
T ss_dssp             EECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHH
T ss_pred             eCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHH
Confidence            66664211 1         2334444 99999999998876644433

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=95.19  E-value=0.045  Score=50.06  Aligned_cols=61  Identities=11%  Similarity=0.031  Sum_probs=42.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc----c---cCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI----L---MTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~----L---l~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+++...+-|+...+.|+|.||||+-.--|       |+.    .   ....+.+..+++++++..++|+||-..
T Consensus        46 ~~~~~al~~A~~~v~~GAdIIDIGgeSTrP-------ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~  113 (314)
T 3tr9_A           46 LDLNSALRTAEKMVDEGADILDIGGEATNP-------FVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTS  113 (314)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECCCSCT-------TC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCC-------CcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCC
Confidence            467777777777778899999999532222       222    1   233456777888888878999999754

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=95.18  E-value=0.13  Score=46.68  Aligned_cols=166  Identities=13%  Similarity=0.065  Sum_probs=96.5

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      +=+...|+-    .|++++++|||.|=+-- ++-.  + .-|+-...+-..+.+...++.|.+.+++||.+-+-.|+-+ 
T Consensus        25 ~~~~a~D~~----sA~l~e~aGf~ai~vs~~s~a~--~-~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~-   96 (298)
T 3eoo_A           25 QVVGAITAY----AAKMAEAVGFKAVYLSGGGVAA--N-SLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGG-   96 (298)
T ss_dssp             EEEECSSHH----HHHHHHHHTCSCEEECHHHHHH--H-TTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSS-
T ss_pred             EEecCCCHH----HHHHHHHcCCCEEEECcHHHHH--H-hcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCC-
Confidence            334555654    45677888999988752 1110  0 1122223334566777777888888899999999999742 


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCccc-cccCCCCcCCCCCcCcH-HHHHHHH---HhC--CCCeEEEecCCCCHHHH
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNAF-LKKLNPKQNRKIPILKY-NFVYNLK---KDF--PELEIIINGGIKTKKEI  201 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-~~G~~g~~~~~~~~~~~-~~i~~i~---~~~--~~ipvi~nGgI~s~~da  201 (311)
                        .+...+.++.++++|+++|.+-+.... .-|..+.    ....+. +.+.+|+   ++.  +++-|++=-|-...+.+
T Consensus        97 --~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~g----k~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gl  170 (298)
T 3eoo_A           97 --AFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPG----KECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGI  170 (298)
T ss_dssp             --HHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCC----CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHH
T ss_pred             --HHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCC----CeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCH
Confidence              335678899999999999999876521 1121111    111232 3455553   332  24555555555533333


Q ss_pred             HHHH-------hh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         202 DLHL-------NY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       202 ~~~l-------~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      .+.+       +. ||+|++=-  +.++..++++.+.+
T Consensus       171 deai~Ra~ay~~AGAD~if~~~--~~~~ee~~~~~~~~  206 (298)
T 3eoo_A          171 DAAIERAIAYVEAGADMIFPEA--MKTLDDYRRFKEAV  206 (298)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECC--CCSHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHhcCCCEEEeCC--CCCHHHHHHHHHHc
Confidence            3333       22 99999831  24666666666554

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.18  E-value=0.041  Score=53.33  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.+..+.++|++.|.+|.-.    |+.        ...|+.++++++.+|++||+. |++.+++++..+.+. +|+|.
T Consensus       238 ~~~~a~~l~~aGvd~v~i~~~~----G~~--------~~~~e~i~~i~~~~p~~pvi~-g~~~t~e~a~~l~~~G~d~I~  304 (494)
T 1vrd_A          238 TMERVEKLVKAGVDVIVIDTAH----GHS--------RRVIETLEMIKADYPDLPVVA-GNVATPEGTEALIKAGADAVK  304 (494)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC----CSS--------HHHHHHHHHHHHHCTTSCEEE-EEECSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEecC----Cch--------HHHHHHHHHHHHHCCCceEEe-CCcCCHHHHHHHHHcCCCEEE
Confidence            4678889999999999997542    210        126789999999987799877 789999999888876 99999


Q ss_pred             Eeh
Q psy2386         213 LGR  215 (311)
Q Consensus       213 igR  215 (311)
                      +|-
T Consensus       305 v~~  307 (494)
T 1vrd_A          305 VGV  307 (494)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            953

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=95.18  E-value=0.34  Score=40.94  Aligned_cols=122  Identities=13%  Similarity=0.087  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEeccCCCCCcHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      .+.++..+.++.+. .|+|.|++..  |..  ..  .|          .++++++|+. .+.||.+-.-.. +.      
T Consensus        10 ~~~~~~~~~~~~~~-~~~diie~G~--p~~--~~--~g----------~~~i~~ir~~~~~~~i~~~~~~~-~~------   65 (211)
T 3f4w_A           10 LTLPEAMVFMDKVV-DDVDIIEVGT--PFL--IR--EG----------VNAIKAIKEKYPHKEVLADAKIM-DG------   65 (211)
T ss_dssp             CCHHHHHHHHHHHG-GGCSEEEECH--HHH--HH--HT----------THHHHHHHHHCTTSEEEEEEEEC-SC------
T ss_pred             CCHHHHHHHHHHhh-cCccEEEeCc--HHH--Hh--cc----------HHHHHHHHHhCCCCEEEEEEEec-cc------
Confidence            45666666666554 4789999876  542  11  12          2567777776 478875532221 11      


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhCCCCeEEEe-cCCCCH-HHHHHHHhh-cC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIIN-GGIKTK-KEIDLHLNY-ID  209 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~~~ipvi~n-GgI~s~-~da~~~l~~-ad  209 (311)
                      ...+++.+.++|+|.+++|.-..              ..+. +.+..+++.  .++++.. =...++ +.+..+.+. +|
T Consensus        66 ~~~~~~~~~~~Gad~v~v~~~~~--------------~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d  129 (211)
T 3f4w_A           66 GHFESQLLFDAGADYVTVLGVTD--------------VLTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGAD  129 (211)
T ss_dssp             HHHHHHHHHHTTCSEEEEETTSC--------------HHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHhcCCCEEEEeCCCC--------------hhHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCC
Confidence            12458889999999999996631              0122 344444443  4666541 235565 446666665 99


Q ss_pred             EEEEehh
Q psy2386         210 GVMLGRE  216 (311)
Q Consensus       210 gVmigRa  216 (311)
                      .|.+..|
T Consensus       130 ~i~v~~g  136 (211)
T 3f4w_A          130 MLAVHTG  136 (211)
T ss_dssp             EEEEECC
T ss_pred             EEEEcCC
Confidence            9887544

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.17  E-value=0.079  Score=50.12  Aligned_cols=66  Identities=14%  Similarity=0.316  Sum_probs=51.2

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|++.|.+....    |.+        ....+.++++++.+ ++||++ |+|.|+++++.+.+. ||+|.+
T Consensus       146 ~e~~~~lveaGvdvIvldta~----G~~--------~~~~e~I~~ik~~~-~i~Vi~-g~V~t~e~A~~a~~aGAD~I~v  211 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAH----GHS--------LNIIRTLKEIKSKM-NIDVIV-GNVVTEEATKELIENGADGIKV  211 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSC----CSB--------HHHHHHHHHHHTTC-CCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEEeCCC----CCc--------ccHHHHHHHHHhcC-CCeEEE-eecCCHHHHHHHHHcCCCEEEE
Confidence            477899999999999874221    110        01357889999887 799886 789999999999887 999999


Q ss_pred             e
Q psy2386         214 G  214 (311)
Q Consensus       214 g  214 (311)
                      |
T Consensus       212 G  212 (400)
T 3ffs_A          212 G  212 (400)
T ss_dssp             C
T ss_pred             e
Confidence            6

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=95.17  E-value=0.056  Score=48.81  Aligned_cols=94  Identities=16%  Similarity=0.242  Sum_probs=61.5

Q ss_pred             HHHHHHHhcccc--ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHH
Q psy2386         103 SDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYN  179 (311)
Q Consensus       103 ~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~  179 (311)
                      .+.++++|+..+  .++.|-++       +    .+-++.+.++|+|.|-++.-+.               .++ +.++.
T Consensus       180 ~~av~~ar~~~~~~~~I~VEV~-------t----leea~eA~~aGaD~I~LDn~~~---------------e~l~~av~~  233 (285)
T 1o4u_A          180 ERAVQEVRKIIPFTTKIEVEVE-------N----LEDALRAVEAGADIVMLDNLSP---------------EEVKDISRR  233 (285)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEES-------S----HHHHHHHHHTTCSEEEEESCCH---------------HHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCceEEEEeC-------C----HHHHHHHHHcCCCEEEECCCCH---------------HHHHHHHHH
Confidence            345566666542  34555322       1    2445566779999999886431               122 33444


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFL  223 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i  223 (311)
                      ++...+++|+.++||| +++.+.++.+. +|++.+|+....-|++
T Consensus       234 l~~~~~~v~ieASGGI-t~eni~~~a~tGVD~IsvGslt~sa~~~  277 (285)
T 1o4u_A          234 IKDINPNVIVEVSGGI-TEENVSLYDFETVDVISSSRLTLQEVFV  277 (285)
T ss_dssp             HHHHCTTSEEEEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCCCC
T ss_pred             hhccCCCceEEEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCCCc
Confidence            4443457999999999 46888888776 9999999987766653

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=95.15  E-value=0.42  Score=42.78  Aligned_cols=139  Identities=14%  Similarity=0.102  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ..+.+....+.+++.|...+-==+-          ++.-+     -||..+++.+++.++-+     +++||.+|.-..-
T Consensus        87 g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~k-----Igs~~~~n~~ll~~~a~-----~~kPV~lk~G~~~  156 (276)
T 1vs1_A           87 GLEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQ-----IGARNMQNFPLLREVGR-----SGKPVLLKRGFGN  156 (276)
T ss_dssp             THHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHHCSEEE-----ECGGGTTCHHHHHHHHH-----HTCCEEEECCTTC
T ss_pred             CHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHhCCeEE-----ECcccccCHHHHHHHHc-----cCCeEEEcCCCCC
Confidence            4688888888888888765432111          44433     68889999999877652     5899999865421


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCE-EEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-c---CCCC--
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRT-FIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-G---GIKT--  197 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~-itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-G---gI~s--  197 (311)
                          +.++....+..+.+.|... +.+| |-+. +.+|      ....+|+..+..+++.+ ++||++. .   |.+.  
T Consensus       157 ----t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~-yp~y------~~~~vdl~~i~~lk~~~-~lpVi~dssH~~g~~~~~  224 (276)
T 1vs1_A          157 ----TVEELLAAAEYILLEGNWQVVLVERGIRT-FEPS------TRFTLDVAAVAVLKEAT-HLPVIVDPSHPAGRRSLV  224 (276)
T ss_dssp             ----CHHHHHHHHHHHHHTTCCCEEEEECCBCC-SCCS------SSSBCBHHHHHHHHHHB-SSCEEECCHHHHCSGGGH
T ss_pred             ----CHHHHHHHHHHHHHcCCCeEEEEeCCcCC-CCCc------CcchhCHHHHHHHHHHh-CCCEEEeCCCCCCccchH
Confidence                2335667777788999854 4556 4321 3232      12347899899999987 7998752 2   3332  


Q ss_pred             HHHHHHHHhh-cCEEEEehh
Q psy2386         198 KKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa  216 (311)
                      .+-+...... +||+||=+=
T Consensus       225 ~~~~~aAva~Ga~Gl~IE~H  244 (276)
T 1vs1_A          225 PALAKAGLAAGADGLIVEVH  244 (276)
T ss_dssp             HHHHHHHHHTTCSEEEEEBC
T ss_pred             HHHHHHHHHcCCCEEEEEec
Confidence            2323333444 999999754

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=95.13  E-value=1  Score=39.72  Aligned_cols=96  Identities=17%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~  125 (311)
                      .+++.|.+.+.+++...++.+.+.|+|.||+=.=+         +..  ..+.+.+.+.+..+++.+ ++|+.+=+|.-|
T Consensus        21 ~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~---------l~~--~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~   89 (257)
T 2yr1_A           21 CICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADF---------FRA--IDDQERVLATANGLRNIAGEIPILFTIRSER   89 (257)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGG---------CTT--TTCHHHHHHHHHHHHHHSSSCCEEEECCCTT
T ss_pred             EEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeec---------ccc--cCcHHHHHHHHHHHHHhccCCCEEEEEeecc
Confidence            48899999999998888888888899999995322         100  124578888999999887 889999999755


Q ss_pred             CCC----CcHHHHHHHHHHHHHcC-CCEEEEec
Q psy2386         126 DDI----NSYDFVRDFVGTVSSAG-CRTFIVHA  153 (311)
Q Consensus       126 ~~~----~~~~~~~e~~~~l~~~G-~~~itvh~  153 (311)
                      ..+    .+.+...++.+.+.+.| +++|.|.-
T Consensus        90 eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl  122 (257)
T 2yr1_A           90 EGGQPIPLNEAEVRRLIEAICRSGAIDLVDYEL  122 (257)
T ss_dssp             TTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEG
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            422    22345678888888888 99999864

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=95.10  E-value=0.18  Score=45.65  Aligned_cols=169  Identities=14%  Similarity=0.128  Sum_probs=92.9

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                      +...|+-    .|++++++|||.|=+- .++-..    -|+-....-..+.+...+++|.+.+++||.+-+-.|+-+   
T Consensus        24 ~~a~D~~----sA~~~~~aG~~ai~vsg~~~a~~----lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~---   92 (295)
T 1s2w_A           24 MEAHNGL----SARIVQEAGFKGIWGSGLSVSAQ----LGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGN---   92 (295)
T ss_dssp             EEECSHH----HHHHHHHHTCSCEEECCHHHHHT----C---------CHHHHHHHHHHHHTCSSCEEEECCSSCSS---
T ss_pred             ecCCCHH----HHHHHHHcCCCEEEeChHHHHHh----CCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCC---
Confidence            5555654    4677788899999776 222211    122222334556677778888888899999999999643   


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCc--HHHHHHHHHhC--CCCeEEEecCCC-C---HHHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILK--YNFVYNLKKDF--PELEIIINGGIK-T---KKEI  201 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~--~~~i~~i~~~~--~~ipvi~nGgI~-s---~~da  201 (311)
                      .+...+.++.+.++|+++|.+-+... .--|+-|......-|.+  .+.|+.++++.  +++-|++--|-. .   .+++
T Consensus        93 ~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~a  172 (295)
T 1s2w_A           93 FNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEA  172 (295)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHH
Confidence            23577889999999999999986642 01121110000111111  23444444443  245566655554 1   2444


Q ss_pred             H----HHHhh-cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         202 D----LHLNY-IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       202 ~----~~l~~-adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      .    .+.+. ||+|.+=- ...++..++++.+.+.
T Consensus       173 i~Ra~ay~eAGAd~i~~e~-~~~~~~~~~~i~~~~~  207 (295)
T 1s2w_A          173 LKRAEAYRNAGADAILMHS-KKADPSDIEAFMKAWN  207 (295)
T ss_dssp             HHHHHHHHHTTCSEEEECC-CSSSSHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEEEcC-CCCCHHHHHHHHHHcC
Confidence            3    33333 99999931 1234556666666543

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=95.08  E-value=0.25  Score=44.78  Aligned_cols=98  Identities=19%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN  129 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~  129 (311)
                      +=+...|+-    .|++++++|||.|=+--+ ....+ .-|+-....-..+.+...+++|.+.++.||++-+-.|+-.. 
T Consensus        20 ~~~~a~D~~----sA~~~~~aG~~ai~vs~~-~~a~~-~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~-   92 (295)
T 1xg4_A           20 QIVGTINAN----HALLAQRAGYQAIYLSGG-GVAAG-SLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSS-   92 (295)
T ss_dssp             EEEECSSHH----HHHHHHHTTCSCEEECHH-HHHHT-TTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSS-
T ss_pred             EEecCcCHH----HHHHHHHcCCCEEEECch-Hhhhh-hcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCC-
Confidence            335556654    467888899999877521 11111 11333334456677788888888888999999999985422 


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                       .+...+.++.+.++|+++|.+-+..
T Consensus        93 -~~~~~~~v~~l~~aGa~gv~iEd~~  117 (295)
T 1xg4_A           93 -AFNVARTVKSMIKAGAAGLHIEDQV  117 (295)
T ss_dssp             -HHHHHHHHHHHHHHTCSEEEEECBC
T ss_pred             -HHHHHHHHHHHHHcCCeEEEECCCC
Confidence             3357788999999999999998664

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=95.06  E-value=0.94  Score=40.00  Aligned_cols=139  Identities=13%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             CCCCeEEEec-CCCHHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          44 EEHPIAFQVG-DNEPKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .+.+++.=+- +.-|+....+++.+. ++|+|.|.+|.           +|+         .++++...+..+.-|+|=+
T Consensus        75 ~g~~VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh~-----------~~G---------~~~l~~~~~~~~~gv~vL~  134 (255)
T 3qw3_A           75 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP-----------YMG---------SDSLQPFMRYPDKAVFVLC  134 (255)
T ss_dssp             TTCCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECC-----------TTC---------HHHHHHHHTCTTSEEEEEE
T ss_pred             CCCeEEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEcc-----------cCC---------HHHHHHHHHhhCCceEEEE
Confidence            4667777765 444677777777664 69999999982           222         1333443333333444444


Q ss_pred             eccCCC----CC------c-HHHHHHHHHH-HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         122 RIGIDD----IN------S-YDFVRDFVGT-VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       122 R~g~~~----~~------~-~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      ++....    .+      + ++...+.++. ..+.|.+.+.+.+..                  -+.+..+++.+++.++
T Consensus       135 ~tS~~~~~~~q~~~~~~~~~~~~V~~~a~~~~~~~g~~GvV~~at~------------------~~e~~~ir~~~~~~~~  196 (255)
T 3qw3_A          135 KTSNKGSNDLQCLRVGDRYLYEAVAERAEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTLWF  196 (255)
T ss_dssp             ECCSGGGGTTTTSEETTEEHHHHHHHHHHTGGGGGSCEEEEECSSC------------------HHHHHHHHHHCSSCCE
T ss_pred             eCCCccHHHHHhcccCCCCHHHHHHHHHHHHhhhhCCeEEEECCCC------------------HHHHHHHHHHCCCCeE
Confidence            432211    11      1 2334444444 445888888774332                  1346777877766665


Q ss_pred             EEec-CC--CCHHHHHHHHhhcC----E--EEEehhhhhCCc
Q psy2386         190 IING-GI--KTKKEIDLHLNYID----G--VMLGREAYKNPF  222 (311)
Q Consensus       190 i~nG-gI--~s~~da~~~l~~ad----g--VmigRa~l~~P~  222 (311)
                      +.-| +.  .|++++.+.  .+|    +  +.+||+++.-+.
T Consensus       197 l~PGIg~qg~tp~~a~~~--G~d~~~~~~livvGR~I~~A~d  236 (255)
T 3qw3_A          197 LVPGIGAQGGSLKASLDA--GLRADGSGMLINVSRGLARAAD  236 (255)
T ss_dssp             EECCC-----CHHHHHHH--HCCTTSCCEEEEESHHHHTSSC
T ss_pred             EECCcCCCCCCHHHHHHc--CCCcccCeeEEEeChhhcCCCC
Confidence            5433 22  166665542  366    5  999999987544

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=95.05  E-value=0.29  Score=45.53  Aligned_cols=99  Identities=12%  Similarity=0.040  Sum_probs=71.4

Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCC---CcH--------------------------HHHHHHHHHHHHcCCC
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI---NSY--------------------------DFVRDFVGTVSSAGCR  147 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~---~~~--------------------------~~~~e~~~~l~~~G~~  147 (311)
                      .+++.+.+.++.+++.++.|+.|.+-......   ...                          ..+.+.++.+.+.|++
T Consensus        45 ~s~~~l~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  124 (369)
T 3bw2_A           45 KTADGMYQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVP  124 (369)
T ss_dssp             SCHHHHHHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCS
T ss_pred             CCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCC
Confidence            46888889999999888788888764322210   000                          0135667788899999


Q ss_pred             EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE-eh
Q psy2386         148 TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML-GR  215 (311)
Q Consensus       148 ~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi-gR  215 (311)
                      .|.+|...                ..++.++++++.  +++|+.  .+.|++++....+. +|+|.+ |+
T Consensus       125 ~V~~~~g~----------------~~~~~i~~~~~~--g~~v~~--~v~t~~~a~~a~~~GaD~i~v~g~  174 (369)
T 3bw2_A          125 VVSFHFGV----------------PDREVIARLRRA--GTLTLV--TATTPEEARAVEAAGADAVIAQGV  174 (369)
T ss_dssp             EEEEESSC----------------CCHHHHHHHHHT--TCEEEE--EESSHHHHHHHHHTTCSEEEEECT
T ss_pred             EEEEeCCC----------------CcHHHHHHHHHC--CCeEEE--ECCCHHHHHHHHHcCCCEEEEeCC
Confidence            99998653                246788888874  688776  57899999888766 999999 65

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=94.98  E-value=0.16  Score=45.49  Aligned_cols=164  Identities=12%  Similarity=0.123  Sum_probs=97.9

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      ++=+...|.-    .|++++++|||.|=+- .+.-.    .-|+-....-..+.+...++.|.+.++.||++-+-.|+-.
T Consensus        18 i~~~~a~D~~----sA~~~~~aG~~ai~vsg~s~a~----~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~   89 (275)
T 2ze3_A           18 FLLPNAWDVA----SARLLEAAGFTAIGTTSAGIAH----ARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGH   89 (275)
T ss_dssp             EEECEESSHH----HHHHHHHHTCSCEEECHHHHHH----HSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSS
T ss_pred             eeEecccCHH----HHHHHHHcCCCEEEECcHHHHH----hCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCC
Confidence            3334445544    4677888999999876 22211    1234444455677788888888888899999999999542


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc--HHHHHHHHHhCC--CCeEEEecCCCC------
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK--YNFVYNLKKDFP--ELEIIINGGIKT------  197 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~--~~~i~~i~~~~~--~ipvi~nGgI~s------  197 (311)
                      .  .++..+.++.+.++|+++|.+-+... .   .|+.   .-+.+  .+.|+.+++...  .+|+..+|-..+      
T Consensus        90 ~--~~~~~~~v~~l~~aGaagv~iED~~~-~---~~k~---l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g  160 (275)
T 2ze3_A           90 A--PEDVRRTVEHFAALGVAGVNLEDATG-L---TPTE---LYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHG  160 (275)
T ss_dssp             S--HHHHHHHHHHHHHTTCSEEEEECBCS-S---SSSC---BCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCS
T ss_pred             C--HHHHHHHHHHHHHcCCcEEEECCCcC-C---CCCc---cCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhcccc
Confidence            2  33567889999999999999987642 1   1111   11111  233444444411  366666664333      


Q ss_pred             --H-HHHHHHH-------hh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         198 --K-KEIDLHL-------NY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       198 --~-~da~~~l-------~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                        + +.+.+.+       +. ||+|.+=-  +.++...+++.+.+
T Consensus       161 ~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~--~~~~~~~~~i~~~~  203 (275)
T 2ze3_A          161 ATDEERLAETVRRGQAYADAGADGIFVPL--ALQSQDIRALADAL  203 (275)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCSEEECTT--CCCHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHHHHHHHHCCCCEEEECC--CCCHHHHHHHHHhc
Confidence              1 2233333       22 99998832  34445677776654

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=94.97  E-value=0.4  Score=41.68  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSS  143 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~  143 (311)
                      +..+.++|+|.|-|+.+.--     .        ....+.+.++...+. +.-+.|  -+|    ++    .+. +.+..
T Consensus        78 ~~~l~~~Ga~~VllghseRR-----~--------~~~e~~~k~~~A~~~-GL~~iv--cVg----e~----~e~-~~~~~  132 (226)
T 1w0m_A           78 LENIKEAGGSGVILNHSEAP-----L--------KLNDLARLVAKAKSL-GLDVVV--CAP----DP----RTS-LAAAA  132 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSC-----C--------BHHHHHHHHHHHHHT-TCEEEE--EES----SH----HHH-HHHHH
T ss_pred             HHHHHHcCCCEEEEeeeecc-----C--------CHHHHHHHHHHHHHC-CCEEEE--EeC----CH----HHH-HHHhc
Confidence            34567889999999855411     0        111244444444442 443333  333    11    121 44567


Q ss_pred             cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH---H-HHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         144 AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY---N-LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       144 ~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~---~-i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      .+.+.|-+-+|..  -| +|.   ....+.-+.+.   + +++..++++|++-|+|.+.+++..+... +||+.||++++
T Consensus       133 ~~~~iIayep~wa--iG-tG~---~v~t~~~d~~~~~~~~ir~~~~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l  206 (226)
T 1w0m_A          133 LGPHAVAVEPPEL--IG-TGR---AVSRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAV  206 (226)
T ss_dssp             TCCSEEEECCGGG--TT-TSC---CHHHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CCCCEEEEcChhh--hc-cCC---CCCCCChhHHHHHHHHHHhccCCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHH
Confidence            7888888888753  33 110   00012233222   2 2232336899999999999999988876 99999999998


Q ss_pred             hCCcchHH
Q psy2386         219 KNPFLMSN  226 (311)
Q Consensus       219 ~~P~i~~~  226 (311)
                      .-+.+..-
T Consensus       207 ~a~~~~~~  214 (226)
T 1w0m_A          207 KAKDPYAK  214 (226)
T ss_dssp             TCSSHHHH
T ss_pred             CCcCHHHH
Confidence            87664433

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=94.91  E-value=0.34  Score=43.07  Aligned_cols=141  Identities=16%  Similarity=0.098  Sum_probs=87.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEE-ec----------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEIN-LN----------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~Id-iN----------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      |...+.+....+.+.+.|...+- +.          . ++.-     .-||..+++.+++.++.+     +++||.+|.-
T Consensus        70 g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~-----kIga~~~~n~~ll~~~a~-----~~kPV~lk~G  138 (262)
T 1zco_A           70 GYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDIL-----QIGARNSQNFELLKEVGK-----VENPVLLKRG  138 (262)
T ss_dssp             CCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEE-----EECGGGTTCHHHHHHHTT-----SSSCEEEECC
T ss_pred             CccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEE-----EECcccccCHHHHHHHHh-----cCCcEEEecC
Confidence            44477888888888888765432 21          1 3333     357888899888776543     6899999865


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEE-ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CH--
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIV-HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TK--  198 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itv-h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~--  198 (311)
                      ..-    +.++..+.+..+...|...+++ |-......+|      .....|+..+..+++.+ ++||++.-+=. +.  
T Consensus       139 ~~~----t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y------~~~~v~L~ai~~lk~~~-~~pVi~d~sH~~g~~~  207 (262)
T 1zco_A          139 MGN----TIQELLYSAEYIMAQGNENVILCERGIRTFETA------TRFTLDISAVPVVKELS-HLPIIVDPSHPAGRRS  207 (262)
T ss_dssp             TTC----CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS------SSSBCCTTHHHHHHHHB-SSCEEECSSTTTCSGG
T ss_pred             CCC----CHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc------ChhhcCHHHHHHHHhhh-CCCEEEEcCCCCCccc
Confidence            421    2345677788888999865554 5211112233      22346778888999886 79986643322 11  


Q ss_pred             ---HHHHHHHhh-cCEEEEehh
Q psy2386         199 ---KEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       199 ---~da~~~l~~-adgVmigRa  216 (311)
                         .-+...... ++|+||=+=
T Consensus       208 ~v~~~~~aAva~Ga~Gl~iE~H  229 (262)
T 1zco_A          208 LVIPLAKAAYAIGADGIMVEVH  229 (262)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEBC
T ss_pred             hHHHHHHHHHHcCCCEEEEEec
Confidence               223333333 999999754

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=94.90  E-value=0.24  Score=44.98  Aligned_cols=127  Identities=8%  Similarity=0.087  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +.-|-+..-..+.-.++++.+++.+  .+||.+-+  |..   +.+
T Consensus        32 iD~~~l~~lv~~li~~Gv~Gl~v~----------GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGv--g~~---~t~   96 (307)
T 3s5o_A           32 VDYGKLEENLHKLGTFPFRGFVVQ----------GSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGS--GCE---STQ   96 (307)
T ss_dssp             BCHHHHHHHHHHHTTSCCSEEEES----------SGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEec--CCC---CHH
Confidence            377888888888888999999887          2234444445555577788877766  57877743  322   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccc-cCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLK-KLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~-G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+..-.. +. ..+.       ..-+++.++|.++. ++||+ +|     |=--+++.+.++.
T Consensus        97 ~ai~la~~A~~~Gadavlv~~P~y-~~~~~s~-------~~l~~~f~~ia~a~-~lPiilYn~P~~tg~~l~~~~~~~La  167 (307)
T 3s5o_A           97 ATVEMTVSMAQVGADAAMVVTPCY-YRGRMSS-------AALIHHYTKVADLS-PIPVVLYSVPANTGLDLPVDAVVTLS  167 (307)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCT-TGGGCCH-------HHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCCc-CCCCCCH-------HHHHHHHHHHHhhc-CCCEEEEeCCcccCCCCCHHHHHHHh
Confidence            678999999999999998753321 00 0000       01245566666666 57764 44     2224555555554

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=94.88  E-value=0.32  Score=43.72  Aligned_cols=124  Identities=14%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+++.++- |.+  -.|-..   .++.
T Consensus        17 iD~~~l~~lv~~li~~Gv~gl~v~G----------tTGE~~~Ls~eEr~~v~~~~~~~~~g-Via--Gvg~~~---t~~a   80 (288)
T 2nuw_A           17 VNVDALKTHAKNLLEKGIDAIFVNG----------TTGLGPALSKDEKRQNLNALYDVTHK-LIF--QVGSLN---LNDV   80 (288)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHTTTCSC-EEE--ECCCSC---HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-eEE--eeCCCC---HHHH
Confidence            4788899999988889999998872          23444444566667888888887754 444  333222   3467


Q ss_pred             HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHHH
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDLH  204 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~~  204 (311)
                      +++++.+++.|+|++.+..-.  +.. .+       ...-+++.++++++. ++||+ +|    -|+ -+++.+.++
T Consensus        81 i~la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~L  147 (288)
T 2nuw_A           81 MELVKFSNEMDILGVSSHSPY--YFPRLP-------EKFLAKYYEEIARIS-SHSLYIYNYPAATGYDIPPSILKSL  147 (288)
T ss_dssp             HHHHHHHHTSCCSEEEECCCC--SSCSCC-------HHHHHHHHHHHHHHC-CSCEEEEECHHHHSCCCCHHHHTTT
T ss_pred             HHHHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEECchHhCcCCCHHHHhcc
Confidence            899999999999999886432  111 11       011246677888887 68975 45    243 455555443

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=94.84  E-value=0.53  Score=40.18  Aligned_cols=175  Identities=11%  Similarity=0.127  Sum_probs=97.3

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecce--eccccc-CCchhccccCCCCCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMF--TTQAIL-GNKKHCLDFNAEEHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv--~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      |+|+..==..+.+.|+..+-|- +.  |.+.+- .....+...-+ ..+..|-+|- .+++.+.   +++...+.|.|.|
T Consensus         8 Git~~eda~~a~~~GaD~iGfi-f~~~SpR~V~~~~a~~i~~~~~-~~~~~VgVfvn~~~~~i~---~~~~~~~ld~vQL   82 (205)
T 1nsj_A            8 GITNLEDALFSVESGADAVGFV-FYPKSKRYISPEDARRISVELP-PFVFRVGVFVNEEPEKIL---DVASYVQLNAVQL   82 (205)
T ss_dssp             CCCSHHHHHHHHHHTCSEEEEE-CCTTCTTBCCHHHHHHHHHHSC-SSSEEEEEESSCCHHHHH---HHHHHHTCSEEEE
T ss_pred             CCCcHHHHHHHHHcCCCEEEEE-ecCCCCCcCCHHHHHHHHHhCC-CCCCEEEEEeCCCHHHHH---HHHHhhCCCEEEE
Confidence            5666666677778885322222 21  222221 11111222112 2233344444 4565554   4455778999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |             |.   .+|+.+.+    +++  ++|+.--+++.  +.      .++ ..+.+..+|++.+.+... 
T Consensus        83 H-------------G~---e~~~~~~~----l~~--~~~vika~~v~--~~------~~l-~~~~~~~~d~~LlD~~~~-  130 (205)
T 1nsj_A           83 H-------------GE---EPIELCRK----IAE--RILVIKAVGVS--NE------RDM-ERALNYREFPILLDTKTP-  130 (205)
T ss_dssp             C-------------SC---CCHHHHHH----HHT--TSEEEEEEEES--SH------HHH-HHHGGGTTSCEEEEESCS-
T ss_pred             C-------------CC---CCHHHHHH----Hhc--CCCEEEEEEcC--CH------HHH-HHHHHcCCCEEEECCCCC-
Confidence            9             11   34555433    332  36776556653  11      122 223444489998875532 


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      ..|-+|+      ..||+.+..++ .. +.|++..||+ +++.+.+.+..  ++||=+.+|.-..|-
T Consensus       131 ~~GGtG~------~fdw~~l~~~~-~~-~~p~~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG  188 (205)
T 1nsj_A          131 EYGGSGK------TFDWSLILPYR-DR-FRYLVLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPG  188 (205)
T ss_dssp             SSSSCCS------CCCGGGTGGGG-GG-SSCEEEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred             CCCCCCC------ccCHHHHHhhh-cC-CCcEEEECCC-CHHHHHHHHHhcCCCEEEECCceecCCC
Confidence            1232333      47998876543 22 5799999999 56788777764  999999999864443

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=94.84  E-value=0.082  Score=47.98  Aligned_cols=86  Identities=8%  Similarity=0.013  Sum_probs=61.6

Q ss_pred             HHHHHHHHHcCCCEEEEecCc----cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386         135 RDFVGTVSSAGCRTFIVHARN----AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-ID  209 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt----~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-ad  209 (311)
                      .+.++.++++|++.|.+--+.    ...+|..       ...+.++|+++++.+ ++||++-+++...++++.+.+. ||
T Consensus        31 ~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~-------R~~~~~~i~~i~~~v-~iPvl~k~~i~~ide~qil~aaGAD  102 (297)
T 4adt_A           31 VEQAKIAEKAGAIGVMILENIPSELRNTDGVA-------RSVDPLKIEEIRKCI-SINVLAKVRIGHFVEAQILEELKVD  102 (297)
T ss_dssp             HHHHHHHHHHTCSEEEECCCCC-----CCCCC-------CCCCHHHHHHHHTTC-CSEEEEEEETTCHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCcchhcCCcc-------cCCCHHHHHHHHHhc-CCCEEEeccCCcHHHHHHHHHcCCC
Confidence            478999999999999886221    1122211       124789999999998 8999998888888888888766 99


Q ss_pred             EEEEehhhhhCCcchHHhHh
Q psy2386         210 GVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~  229 (311)
                      .| -....+..+.+...+.+
T Consensus       103 ~I-d~s~~~~~~~li~~i~~  121 (297)
T 4adt_A          103 ML-DESEVLTMADEYNHINK  121 (297)
T ss_dssp             EE-EEETTSCCSCSSCCCCG
T ss_pred             EE-EcCCCCCHHHHHHHHHh
Confidence            99 32233455567666665

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=94.83  E-value=0.33  Score=43.53  Aligned_cols=123  Identities=13%  Similarity=0.053  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      =|.+.+.+-++.+.+.|+|+|=++-          ..|-+..-..+.-.++++.+++.++- |.+  -.|-.   +.++.
T Consensus        16 iD~~~l~~lv~~li~~Gv~gl~v~G----------ttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~--Gvg~~---~t~~a   79 (286)
T 2r91_A           16 LDPELFANHVKNITSKGVDVVFVAG----------TTGLGPALSLQEKMELTDAATSAARR-VIV--QVASL---NADEA   79 (286)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEETS----------TTTTGGGSCHHHHHHHHHHHHHHCSS-EEE--ECCCS---SHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCC-EEE--eeCCC---CHHHH
Confidence            3778898889988889999998872          23333444555557788888777644 444  33322   23467


Q ss_pred             HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHH
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDL  203 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~  203 (311)
                      +++++.+++.|+|++.+..-.  |.. .+       ...-+++.++++++. ++||+ +|    -|+ -+++.+.+
T Consensus        80 i~la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~  145 (286)
T 2r91_A           80 IALAKYAESRGAEAVASLPPY--YFPRLS-------ERQIAKYFRDLCSAV-SIPVFLYNYPAAVGRDVDARAAKE  145 (286)
T ss_dssp             HHHHHHHHHTTCSEEEECCSC--SSTTCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEcCCc--CCCCCC-------HHHHHHHHHHHHHhc-CCCEEEEeChhhcCCCCCHHHHHh
Confidence            899999999999999886432  111 11       011246677888887 68975 45    233 46676666

>3pfr_A Mandelate racemase/muconate lactonizing protein; emolase superfamily fold, D-glucarate dehydratase, D-glucara isomerase; HET: GKR; 1.90A {Actinobacillus succinogenes} PDB: 3n6j_A 3n6h_A* 4gyp_C*

Probab=94.82  E-value=0.15  Score=49.01  Aligned_cols=122  Identities=9%  Similarity=0.054  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+...+ .||..|-|..|.+               +++.-.+.++++|++. ++.+.|-..-+|+.    +
T Consensus       184 ~~~e~~~~~a~~~~~~~Gf~~~KlKvG~~---------------~~~~Di~~v~avRea~pd~~L~vDaN~~w~~----~  244 (455)
T 3pfr_A          184 MDTQAVIELAAASKDRYGFKDFKLKGGVF---------------EGSKEIDTVIELKKHFPDARITLDPNGCWSL----D  244 (455)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHCTTCCEEEECTTBSCH----H
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEcCCCC---------------CHHHHHHHHHHHHHhCCCCeEeecCCCCCCH----H
Confidence            579999998887654 6999999986642               1222345667777765 45566665556653    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      +...+++.+++. +.+|-               + ..++-|    ++..+++++.. .+||.+.=-+.+..++.++++. 
T Consensus       245 ~A~~~~~~L~~~-l~~iE---------------e-P~~~~d~~~~~~~~~~l~~~~-~iPIa~dE~~~~~~~~~~~i~~~  306 (455)
T 3pfr_A          245 EAIQLCKGLNDV-LTYAE---------------D-PCIGENGYSGREIMAEFRRRT-GIPTATNMIATNWREMCHAIMLQ  306 (455)
T ss_dssp             HHHHHHTTCTTT-CSEEE---------------S-CBCCBTTBCHHHHHHHHHHHH-CCCEEESSSCCSHHHHHHHHHHT
T ss_pred             HHHHHHHhhccc-ceeee---------------c-CCChhhccchHHHHHHHHhcC-CCCEEeCCCcCCHHHHHHHHHcC
Confidence            567788878776 55551               1 111224    67888999887 6998886667889999998875 


Q ss_pred             -cCEEEE
Q psy2386         208 -IDGVML  213 (311)
Q Consensus       208 -adgVmi  213 (311)
                       +|.+++
T Consensus       307 a~di~~~  313 (455)
T 3pfr_A          307 SVDIPLA  313 (455)
T ss_dssp             CCSEEBC
T ss_pred             CCCEEEe
Confidence             887764

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=94.82  E-value=0.6  Score=43.20  Aligned_cols=133  Identities=13%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +-..+.+....+.+++.|...+--           ..++|.-+     -||.-++|..++.++-+     .++||.+|.-
T Consensus        87 ~l~~e~~~~L~~~~~~~Gi~~~st~~d~~svd~l~~~~v~~~K-----I~S~~~~n~~LL~~va~-----~gkPviLstG  156 (349)
T 2wqp_A           87 ALNEEDEIKLKEYVESKGMIFISTLFSRAAALRLQRMDIPAYK-----IGSGECNNYPLIKLVAS-----FGKPIILSTG  156 (349)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHTCSCEE-----ECGGGTTCHHHHHHHHT-----TCSCEEEECT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEeeCCHHHHHHHHhcCCCEEE-----ECcccccCHHHHHHHHh-----cCCeEEEECC
Confidence            345677888888888887655422           24577665     47777899998766543     5899999865


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      ..     +.+++...++.+.+.|.+.+.+|+-+. |.-       ....+|+..|..+++.+|++||..++--....-+.
T Consensus       157 ma-----t~~Ei~~Ave~i~~~G~~iiLlhc~s~-Yp~-------~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~  223 (349)
T 2wqp_A          157 MN-----SIESIKKSVEIIREAGVPYALLHCTNI-YPT-------PYEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACL  223 (349)
T ss_dssp             TC-----CHHHHHHHHHHHHHHTCCEEEEECCCC-SSC-------CGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHH
T ss_pred             CC-----CHHHHHHHHHHHHHcCCCEEEEeccCC-CCC-------ChhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHH
Confidence            42     244567777888889998888886432 211       12236889999999987579997765333344444


Q ss_pred             HHHhh-cC
Q psy2386         203 LHLNY-ID  209 (311)
Q Consensus       203 ~~l~~-ad  209 (311)
                      ..... ||
T Consensus       224 AAvAlGA~  231 (349)
T 2wqp_A          224 GAVALGGS  231 (349)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHhCCC
Confidence            44443 77

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=94.80  E-value=0.4  Score=42.18  Aligned_cols=106  Identities=19%  Similarity=0.162  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-----CcHHH
Q psy2386          59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI-----NSYDF  133 (311)
Q Consensus        59 ~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-----~~~~~  133 (311)
                      .+.+-.+.|.+.|||.|||+-|+=            =+ ..+.-.++++.+++.   -+.|+.-.|..+.     .+.+.
T Consensus        86 ~~~~yl~~~k~lGf~~iEiS~G~i------------~l-~~~~~~~~I~~~~~~---G~~v~~EvG~k~~~~~~~~~~~~  149 (251)
T 1qwg_A           86 KFDEFLNECEKLGFEAVEISDGSS------------DI-SLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTIDD  149 (251)
T ss_dssp             CHHHHHHHHHHHTCCEEEECCSSS------------CC-CHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHHH
T ss_pred             cHHHHHHHHHHcCCCEEEECCCcc------------cC-CHHHHHHHHHHHHHC---CCEEeeeccccCCcccCCCCHHH
Confidence            344555777899999999995542            12 234445566665554   3566777776554     23456


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccc-cCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLK-KLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~-G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      .++.++...++||+.|.+-+|..... |+..    ..+....+.+.++.+.+
T Consensus       150 ~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~----~~g~~r~d~v~~i~~~l  197 (251)
T 1qwg_A          150 RIKLINFDLDAGADYVIIEGRESGKGKGLFD----KEGKVKENELDVLAKNV  197 (251)
T ss_dssp             HHHHHHHHHHHTCSEEEECCTTTCCSSTTBC----TTSCBCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCcEEEEeeecccCCcccCC----CCCCCcHHHHHHHHHhC
Confidence            78889999999999999999953111 3211    22346778888887766

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=94.79  E-value=0.19  Score=45.46  Aligned_cols=140  Identities=16%  Similarity=0.142  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEe-------c---cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINL-------N---CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~Idi-------N---~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      .+.+....+.+++.|...+-=       .   =.+|.-+     -||..+++.+++.++    . .+++||.+|.-..-+
T Consensus        75 ~~gl~~l~~~~~~~Glp~~te~~d~~~~~~l~~~vd~~k-----IgA~~~~n~~Ll~~~----a-~~~kPV~lk~G~~~t  144 (292)
T 1o60_A           75 EEGLKIFQELKDTFGVKIITDVHEIYQCQPVADVVDIIQ-----LPAFLARQTDLVEAM----A-KTGAVINVKKPQFLS  144 (292)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECCSGGGHHHHHTTCSEEE-----ECGGGTTCHHHHHHH----H-HTTCEEEEECCTTSC
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHhcCCEEE-----ECcccccCHHHHHHH----H-cCCCcEEEeCCCCCC
Confidence            456666666667777544331       0   1344443     688899999966654    3 368999999765322


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe--------------
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN--------------  192 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n--------------  192 (311)
                      .    +++...+..+...|...+++.-|...+ +|.      ....|+..+..+++.++++||+..              
T Consensus       145 ~----~ei~~Av~~i~~~Gn~~i~L~~rg~~~-~y~------~~~~dl~~i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~  213 (292)
T 1o60_A          145 P----SQMGNIVEKIEECGNDKIILCDRGTNF-GYD------NLIVDMLGFSVMKKASKGSPVIFDVTHSLQCRDPFGAA  213 (292)
T ss_dssp             G----GGHHHHHHHHHHTTCCCEEEEECCEEC-STT------CEECCTTHHHHHHHHTTSCCEEEEHHHHCC--------
T ss_pred             H----HHHHHHHHHHHHcCCCeEEEEECCCCC-CCC------ccccCHHHHHHHHhhCCCCCEEEECCCcccccCccccC
Confidence            2    245677888899998766665554322 321      012588888899988656899882              


Q ss_pred             -cCCCCH--HHHHHHHhh-cCEEEEehhh
Q psy2386         193 -GGIKTK--KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       193 -GgI~s~--~da~~~l~~-adgVmigRa~  217 (311)
                       +|.+..  .-+....+. +||+||=+=+
T Consensus       214 ~~g~~~~~~~ia~aAva~Ga~Gl~IE~H~  242 (292)
T 1o60_A          214 SSGRRAQVTELARSGLAVGIAGLFLEAHP  242 (292)
T ss_dssp             ----CTTHHHHHHHHHHHCCSEEEEEEES
T ss_pred             CCCChhHHHHHHHHHHHcCCCEEEEEecC
Confidence             232221  222333344 9999997543

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=94.73  E-value=0.29  Score=45.32  Aligned_cols=139  Identities=15%  Similarity=0.129  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccC----------CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCG----------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~g----------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ..+.+....+.+++.|...+-==+-          ++.-     .-||..+++.+++.++-     .+++||.+|.-..-
T Consensus       155 g~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~vd~l-----kIgAr~~~n~~LL~~va-----~~~kPVilk~G~~~  224 (350)
T 1vr6_A          155 GEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADII-----QIGARNAQNFRLLSKAG-----SYNKPVLLKRGFMN  224 (350)
T ss_dssp             THHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHHCSEE-----EECGGGTTCHHHHHHHH-----TTCSCEEEECCTTC
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCEE-----EECcccccCHHHHHHHH-----ccCCcEEEcCCCCC
Confidence            3678888888888888654422111          3433     36888999999977765     36899999865521


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEE--ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-c---CCCC--
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIV--HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-G---GIKT--  197 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itv--h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-G---gI~s--  197 (311)
                          +.+++...+..+.+.|...+++  ||-+. +.+|      .....|+..+..+++.+ ++||++. .   |-+.  
T Consensus       225 ----tl~ei~~Ave~i~~~GN~~viLceRG~~t-yp~~------~~~~vdl~ai~~lk~~~-~lpVi~dssHs~G~~~~v  292 (350)
T 1vr6_A          225 ----TIEEFLLSAEYIANSGNTKIILCERGIRT-FEKA------TRNTLDISAVPIIRKES-HLPILVDPSHSGGRRDLV  292 (350)
T ss_dssp             ----CHHHHHHHHHHHHHTTCCCEEEEECCBCC-SCCS------SSSBCCTTHHHHHHHHB-SSCEEECHHHHHCSGGGH
T ss_pred             ----CHHHHHHHHHHHHHCCCCeEEEEeCCCCC-CCCc------ChhhhhHHHHHHHHHhh-CCCEEEeCCCCCcccchH
Confidence                2335667777788999866655  33211 2222      12346888899999987 7999762 2   3332  


Q ss_pred             HHHHHHHHhh-cCEEEEehh
Q psy2386         198 KKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa  216 (311)
                      .+-+...+.. |||+||=+=
T Consensus       293 ~~~a~AAvA~GA~Gl~IE~H  312 (350)
T 1vr6_A          293 IPLSRAAIAVGAHGIIVEVH  312 (350)
T ss_dssp             HHHHHHHHHHTCSEEEEEBC
T ss_pred             HHHHHHHHHhCCCEEEEEec
Confidence            2333333444 999999754

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=94.65  E-value=0.069  Score=48.11  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=42.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc---ccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI---LMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~---Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +++...+.|+...+.|+|.||||.-..-|       |+.   .....+.+..+++++++.+++||+|-..
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrP-------ga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~   98 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS   98 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCST-------TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCC
Confidence            46777777777777899999999633211       222   2345677888888888877999999753

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=94.64  E-value=0.27  Score=44.12  Aligned_cols=114  Identities=16%  Similarity=0.160  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEec-----------cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLN-----------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN-----------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .+.+....+.+.+.|...+-==           . +|.-     ..||..+++.+++.++    . .++.||.+|.-..-
T Consensus        72 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-~d~~-----kIga~~~~n~~ll~~~----a-~~~kPV~lk~G~~~  140 (280)
T 2qkf_A           72 EEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEV-CDVI-----QLPAFLARQTDLVVAM----A-KTGNVVNIKKPQFL  140 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHHH-CSEE-----EECGGGTTBHHHHHHH----H-HTCCEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHhh-CCEE-----EECcccccCHHHHHHH----H-cCCCcEEEECCCCC
Confidence            4556666666677776554311           1 4443     3688889999966654    2 36899999976532


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                      +.    +++...+..+...|...+++.-|+..+ +|.      ....|+..+..+++.++++||+..
T Consensus       141 t~----~e~~~A~~~i~~~Gn~~i~L~~rg~~~-~~~------~~~~dl~~i~~lk~~~~~~pV~~D  196 (280)
T 2qkf_A          141 SP----SQMKNIVEKFHEAGNGKLILCERGSSF-GYD------NLVVDMLGFGVMKQTCGNLPVIFD  196 (280)
T ss_dssp             CG----GGHHHHHHHHHHTTCCCEEEEECCEEC-STT------CEECCTTHHHHHHHHTTTCCEEEE
T ss_pred             CH----HHHHHHHHHHHHcCCCeEEEEECCCCC-CCC------ccccCHHHHHHHHHhCCCCCEEEE
Confidence            22    245677888889998766665554322 221      112577888899988656899983

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=94.63  E-value=0.073  Score=48.72  Aligned_cols=60  Identities=15%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcc---cCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAIL---MTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~L---l~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +++...+-|+...+.|+|.||||.-.--|       |+..   ....+.+..+|+++++..++|+||-..
T Consensus        31 ~~~~a~~~a~~~v~~GAdIIDIGgeSTrP-------Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~   93 (314)
T 2vef_A           31 ALEQALQQARKLIAEGASMLDIGGESTRP-------GSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTW   93 (314)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC------------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCC
Confidence            45666666666777899999999533211       2222   245677888888898878999999753

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=94.61  E-value=2.3  Score=38.08  Aligned_cols=149  Identities=13%  Similarity=0.076  Sum_probs=97.8

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-  121 (311)
                      ....|+++.+++++..+..+.++.+++.|+|+|=+.  .|..+.          -+.+-+.+-.++|.+++++||.+=- 
T Consensus        67 ~gr~pviaGvg~~~t~~ai~la~~A~~~Gadavlv~--~P~y~~----------~s~~~l~~~f~~ia~a~~lPiilYn~  134 (292)
T 2vc6_A           67 NGRVPVIAGAGSNSTAEAIAFVRHAQNAGADGVLIV--SPYYNK----------PTQEGIYQHFKAIDAASTIPIIVYNI  134 (292)
T ss_dssp             TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEE--CCCSSC----------CCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCCcEEEecCCccHHHHHHHHHHHHHcCCCEEEEc--CCCCCC----------CCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            446899999999999999999999999999999886  454321          1456677777788888899988743 


Q ss_pred             --eccCCCCCcHHHHHHHHHHHHH-c-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCC
Q psy2386         122 --RIGIDDINSYDFVRDFVGTVSS-A-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIK  196 (311)
Q Consensus       122 --R~g~~~~~~~~~~~e~~~~l~~-~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~  196 (311)
                        |.|.+-.      .+.+.+|.+ . .+.+|.-..                  .|+..+.++.+..+ ++.| .+|+= 
T Consensus       135 P~~tg~~l~------~~~~~~La~~~pnIvgiK~s~------------------gd~~~~~~~~~~~~~~f~v-~~G~d-  188 (292)
T 2vc6_A          135 PGRSAIEIH------VETLARIFEDCPNVKGVXDAT------------------GNLLRPSLERMACGEDFNL-LTGED-  188 (292)
T ss_dssp             HHHHSCCCC------HHHHHHHHHHCTTEEEEEECS------------------CCTHHHHHHHHHSCTTSEE-EESCG-
T ss_pred             ccccCcCCC------HHHHHHHHhhCCCEEEEecCC------------------CCHHHHHHHHHHcCCCEEE-EECch-
Confidence              3454332      244444444 3 233332211                  25667777777654 4655 46641 


Q ss_pred             CHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         197 TKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       197 s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                        +.+...+.. ++|++.+.+.+ -|..+.++.+.+.
T Consensus       189 --~~~~~~l~~G~~G~is~~~n~-~P~~~~~l~~a~~  222 (292)
T 2vc6_A          189 --GTALGYMAHGGHGCISVTANV-APALCADFQQACL  222 (292)
T ss_dssp             --GGHHHHHHTTCCEEEESGGGT-CHHHHHHHHHHHH
T ss_pred             --HHHHHHHHcCCCEEEecHHHh-CHHHHHHHHHHHH
Confidence              223344444 99999998876 4777777766544

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=94.60  E-value=0.13  Score=46.30  Aligned_cols=71  Identities=10%  Similarity=0.088  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-++.+.++|+|.|.+|.-+.               .+. +.++.++...+++++.++||| +++.+.++.+. +|++.+
T Consensus       205 eea~eal~aGaD~I~LDn~~~---------------~~~~~~v~~l~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~isv  268 (284)
T 1qpo_A          205 EQLDAVLPEKPELILLDNFAV---------------WQTQTAVQRRDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAV  268 (284)
T ss_dssp             HHHHHHGGGCCSEEEEETCCH---------------HHHHHHHHHHHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHcCCCEEEECCCCH---------------HHHHHHHHHhhccCCCeEEEEECCC-CHHHHHHHHhcCCCEEEE
Confidence            445666779999999986542               122 345556654457899999999 57889888877 999999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      |+....-|+
T Consensus       269 G~l~~~a~~  277 (284)
T 1qpo_A          269 GALTHSVRV  277 (284)
T ss_dssp             GGGTSSBCC
T ss_pred             CHHHcCCCC
Confidence            987766665

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=94.59  E-value=0.77  Score=41.33  Aligned_cols=116  Identities=9%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             cccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-----CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC
Q psy2386          94 ILMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-----NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN  166 (311)
Q Consensus        94 ~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-----~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~  166 (311)
                      .+..|-+...++++..++. ++.|-.-+- +| ..++     ..+-+..+..+.+++.|+|.|.+.=.|. -+-|.|   
T Consensus       115 p~eeNi~~Tk~vv~~ah~~-gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~-HG~Y~~---  189 (288)
T 3q94_A          115 PFEENVETTKKVVEYAHAR-NVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSV-HGPYKG---  189 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-TCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCB-SSCCSS---
T ss_pred             CHHHHHHHHHHHHHHHHHc-CCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcc-cCCcCC---
Confidence            3445667777888777653 555544432 22 1111     0111234555556789999998754442 111221   


Q ss_pred             CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh-cCEEEEehhh
Q psy2386         167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       167 ~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~-adgVmigRa~  217 (311)
                        .+..|++.+++|++.+ ++|++.-||=.+++ ++++++.. +.-|=|++.+
T Consensus       190 --~p~Ld~~~L~~I~~~v-~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl  239 (288)
T 3q94_A          190 --EPNLGFAEMEQVRDFT-GVPLVLHGGTGIPTADIEKAISLGTSKINVNTEN  239 (288)
T ss_dssp             --SCCCCHHHHHHHHHHH-CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHH
T ss_pred             --CCccCHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHH
Confidence              2458999999999998 69999998776654 46777765 7777777766

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=94.58  E-value=0.041  Score=49.90  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=37.3

Q ss_pred             HHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH-HHHHHHHh---CCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN-FVYNLKKD---FPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       139 ~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~-~i~~i~~~---~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +...++|+|+|-++.-+               +.+.. .++.+...   +|++||.++||| +++.+.++.+. +|++.+
T Consensus       213 ~~A~~aGaD~I~ld~~~---------------~~~l~~~v~~l~~~~~g~~~v~I~ASGGI-t~~ni~~~~~~GvD~i~v  276 (294)
T 3c2e_A          213 TEAIEAGADVIMLDNFK---------------GDGLKMCAQSLKNKWNGKKHFLLECSGGL-NLDNLEEYLCDDIDIYST  276 (294)
T ss_dssp             HHHHHHTCSEEECCC------------------------------------CCEEEEECCC-CC------CCCSCSEEEC
T ss_pred             HHHHHcCCCEEEECCCC---------------HHHHHHHHHHhcccccCCCCeEEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence            34446899999876422               11221 12223222   245999999999 99999999987 999999


Q ss_pred             ehhhhhCCcc
Q psy2386         214 GREAYKNPFL  223 (311)
Q Consensus       214 gRa~l~~P~i  223 (311)
                      |+....-|++
T Consensus       277 Gs~i~~a~~~  286 (294)
T 3c2e_A          277 SSIHQGTPVI  286 (294)
T ss_dssp             GGGTSSCCCC
T ss_pred             echhcCCCCC
Confidence            9987665653

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=94.57  E-value=0.21  Score=49.42  Aligned_cols=70  Identities=16%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHH
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRD  136 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e  136 (311)
                      ++...+-|+...+.|+|.||||.|            +.....++.+.+++..+++.+++|++|-..-           .+
T Consensus       339 ~~~a~~~A~~~v~~GAdiIDIgpg------------~~~v~~~ee~~rvv~~i~~~~~vpisIDT~~-----------~~  395 (566)
T 1q7z_A          339 EEIVIKEAKTQVEKGAEVLDVNFG------------IESQIDVRYVEKIVQTLPYVSNVPLSLDIQN-----------VD  395 (566)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEEECS------------SGGGSCHHHHHHHHHHHHHHTCSCEEEECCC-----------HH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECCC------------CCCCCHHHHHHHHHHHHHhhCCceEEEeCCC-----------HH
Confidence            344445556666789999999933            3334667888999999988789999996431           24


Q ss_pred             HHHHHHHc--CCCEE
Q psy2386         137 FVGTVSSA--GCRTF  149 (311)
Q Consensus       137 ~~~~l~~~--G~~~i  149 (311)
                      .++...++  |++.|
T Consensus       396 v~eaal~~~~G~~iI  410 (566)
T 1q7z_A          396 LTERALRAYPGRSLF  410 (566)
T ss_dssp             HHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhcCCCCEE
Confidence            55555565  77765

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=94.50  E-value=1.6  Score=41.40  Aligned_cols=155  Identities=9%  Similarity=0.021  Sum_probs=94.8

Q ss_pred             CCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeEE
Q psy2386          46 HPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDITV  119 (311)
Q Consensus        46 ~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvsv  119 (311)
                      .|+++=+=   |+ +....+.++.+.++|+.+|.|-=..+.+|.+..-.|-.| -..+...+=|++++.+   .+.|+.|
T Consensus       153 ~PviaD~dtGfG~-~~~v~~~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~l-v~~~e~v~rI~Aar~A~~~~g~d~~I  230 (439)
T 3i4e_A          153 APIVADAEAGFGG-VLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVL-VPTREAVAKLTAARLAADVMGTPTVL  230 (439)
T ss_dssp             CCEEEECTTTTSS-HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCB-CCHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCeEEECCCCCCc-cHHHHHHHHHHHHcCCEEEEEeCCCCCccccCCCCCCee-cCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            89998884   44 446888889999999999999876655554443333344 4444444444455543   3677777


Q ss_pred             EEeccCCC----------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386         120 KHRIGIDD----------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI  171 (311)
Q Consensus       120 KiR~g~~~----------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~  171 (311)
                      =-|..-..                            ....++.++-++.+.+ |+|.|-+++..                
T Consensus       231 iARTDa~~a~l~~s~~d~~d~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E~~~----------------  293 (439)
T 3i4e_A          231 VARTDAEAADLITSDIDDNDKPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCETGK----------------  293 (439)
T ss_dssp             EEEECTTTCCEESCCCCTTTGGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEECCSS----------------
T ss_pred             EEEcCcccccccccccccccchhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEecCCC----------------
Confidence            77764311                            1235667788888888 99999998654                


Q ss_pred             CcHHHHHHHHHh----CCCCeEEEecC-CCC------HHHHHHHH----hh-cCEEEEehhhhh
Q psy2386         172 LKYNFVYNLKKD----FPELEIIINGG-IKT------KKEIDLHL----NY-IDGVMLGREAYK  219 (311)
Q Consensus       172 ~~~~~i~~i~~~----~~~ipvi~nGg-I~s------~~da~~~l----~~-adgVmigRa~l~  219 (311)
                      .+.+.++++.+.    +|.-++.+|.- ..+      .+++..+.    +. ...|.++-+.+.
T Consensus       294 ~~~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~~~~~~~~~~f~~eL~~lGv~~v~~~la~~r  357 (439)
T 3i4e_A          294 PDLEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKKNLDDATIAKFQKELGAMGYKFQFITLAGFH  357 (439)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHTHHHHHHHHTCCEEEETTHHHH
T ss_pred             CCHHHHHHHHHHhcccCCceEEeeCCCCCCcCcccCCHHHHHHHHHHHHHcCCeEEEeChHHHH
Confidence            256666666654    44222334432 233      34443332    22 888888866543

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=94.48  E-value=0.38  Score=43.36  Aligned_cols=123  Identities=16%  Similarity=0.065  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +.-|-+..-+.+.-.++++.+++.++- |.+  -+|-..   .++.
T Consensus        17 iD~~~l~~lv~~li~~Gv~gl~~~----------GttGE~~~Ls~eEr~~v~~~~~~~~~g-via--Gvg~~~---t~~a   80 (293)
T 1w3i_A           17 IDKEKLKIHAENLIRKGIDKLFVN----------GTTGLGPSLSPEEKLENLKAVYDVTNK-IIF--QVGGLN---LDDA   80 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEES----------STTTTGGGSCHHHHHHHHHHHHTTCSC-EEE--ECCCSC---HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------ccccChhhCCHHHHHHHHHHHHHHcCC-EEE--ecCCCC---HHHH
Confidence            478889999998889999999887          223444444556667888888887654 444  333222   3467


Q ss_pred             HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee----cCC-CCHHHHHH
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEII-IN----GGI-KTKKEIDL  203 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n----GgI-~s~~da~~  203 (311)
                      +++++.+++.|+|++.+..-.  |.. .+       ...-+++.+++++++ ++||+ +|    -|+ -+++.+.+
T Consensus        81 i~la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~  146 (293)
T 1w3i_A           81 IRLAKLSKDFDIVGIASYAPY--YYPRMS-------EKHLVKYFKTLCEVS-PHPVYLYNYPTATGKDIDAKVAKE  146 (293)
T ss_dssp             HHHHHHGGGSCCSEEEEECCC--SCSSCC-------HHHHHHHHHHHHHHC-SSCEEEEECHHHHSCCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEcCCC--CCCCCC-------HHHHHHHHHHHHhhC-CCCEEEEECchhhCcCCCHHHHHh
Confidence            899999999999999876432  111 11       001246677888887 68875 45    243 46676665

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=94.46  E-value=0.25  Score=45.14  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      |.+.+.+-++.+.+.|+|+|=++          +..|-+..-..+.-.++++.+++.+  .+||.+-+  |-.   +..+
T Consensus        30 D~~~l~~lv~~li~~Gv~gl~v~----------GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGv--g~~---~t~~   94 (318)
T 3qfe_A           30 DLASQERYYAYLARSGLTGLVIL----------GTNAEAFLLTREERAQLIATARKAVGPDFPIMAGV--GAH---STRQ   94 (318)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEEC--CCS---SHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeC----------ccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCC---CHHH
Confidence            77889999998989999999887          2233333334555566777776665  47888743  322   2346


Q ss_pred             HHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCC-CCHHHHHHHH
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGI-KTKKEIDLHL  205 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI-~s~~da~~~l  205 (311)
                      .+++++.+++.|+|++.+..-.. +.. .+       ...-+++.++|++++ ++||+ +|     .|+ -+++.+.++.
T Consensus        95 ai~la~~a~~~Gadavlv~~P~y-~~kp~~-------~~~l~~~f~~ia~a~-~lPiilYn~P~~t~g~~l~~~~~~~La  165 (318)
T 3qfe_A           95 VLEHINDASVAGANYVLVLPPAY-FGKATT-------PPVIKSFFDDVSCQS-PLPVVIYNFPGVCNGIDLDSDMITTIA  165 (318)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCC----CCC-------HHHHHHHHHHHHHHC-SSCEEEEECCC----CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCcc-cCCCCC-------HHHHHHHHHHHHhhC-CCCEEEEeCCcccCCCCCCHHHHHHHH
Confidence            88999999999999998753321 100 00       001245566677766 57764 33     133 4566666655


Q ss_pred             h
Q psy2386         206 N  206 (311)
Q Consensus       206 ~  206 (311)
                      +
T Consensus       166 ~  166 (318)
T 3qfe_A          166 R  166 (318)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=94.45  E-value=1.2  Score=40.39  Aligned_cols=107  Identities=7%  Similarity=0.065  Sum_probs=65.8

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-ccC-CCC------C-cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IGI-DDI------N-SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~-~~~------~-~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +..|-+...++++...+. ++.|-.-+- +|- .++      + .+-+..+..+.+++.|+|.|.+.=.|. -+.|.++ 
T Consensus       108 ~eENi~~Tk~vv~~ah~~-gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~-HG~Yk~~-  184 (305)
T 1rvg_A          108 FETNVRETRRVVEAAHAV-GVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTS-HGAYKGK-  184 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCC-SSSBCSS-
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCcc-ccccCCC-
Confidence            445667777888777653 555544432 121 111      0 111234555556778999998754442 1112210 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                        ..+..|++.++++++.+ ++|++.-|+=.=|++..++++.
T Consensus       185 --g~p~L~~~~L~~I~~~~-~vpLVlHGgSsv~~~~~~~~~~  223 (305)
T 1rvg_A          185 --GRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRA  223 (305)
T ss_dssp             --SSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHH
T ss_pred             --CCCccCHHHHHHHHHhc-CCCEEEeCCCCCcHHHHHHHHh
Confidence              12458999999999999 5999999998777777777654

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=94.44  E-value=0.33  Score=43.64  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=69.8

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      .||..+++.+++.++-     .+++||.+|.-...+.    +++...++.+.+.|.+.|++.-|...+ +|.      ..
T Consensus       116 IgA~~~~n~~LLr~va-----~~gkPVilK~G~~~t~----~ei~~ave~i~~~Gn~~i~L~erg~~y-~~~------~~  179 (285)
T 3sz8_A          116 VPAFLARQTDLVVAIA-----KAGKPVNVKKPQFMSP----TQLKHVVSKCGEVGNDRVMLCERGSSF-GYD------NL  179 (285)
T ss_dssp             ECGGGTTCHHHHHHHH-----HTSSCEEEECCTTSCG----GGTHHHHHHHHHTTCCCEEEEECCEEC-SSS------CE
T ss_pred             ECccccCCHHHHHHHH-----ccCCcEEEeCCCCCCH----HHHHHHHHHHHHcCCCcEEEEeCCCCC-CCC------cC
Confidence            6888899999766543     2689999996653222    134677888899998877765444323 221      11


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEecCCC---------------C--HHHHHHHHhh-cCEEEEe
Q psy2386         171 ILKYNFVYNLKKDFPELEIIINGGIK---------------T--KKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~nGgI~---------------s--~~da~~~l~~-adgVmig  214 (311)
                      .+|+..+..+++.++++||+...+=.               .  +.-+...... |||++|=
T Consensus       180 ~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE  241 (285)
T 3sz8_A          180 VVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLE  241 (285)
T ss_dssp             ECCTTHHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEE
T ss_pred             ccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEE
Confidence            26888899999987459999843322               1  2233444444 9999986

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=94.38  E-value=0.65  Score=41.81  Aligned_cols=167  Identities=11%  Similarity=0.020  Sum_probs=96.8

Q ss_pred             EecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          51 QVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        51 Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                      =+...|+-    .|++++++|||.|=+--+ ....+. -|+-....-..+.+...+++|.+.++.||.+-+-.|+-   +
T Consensus        25 ~~~a~D~~----sA~i~e~aGf~ai~vs~s-~~a~~~-lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg---~   95 (287)
T 3b8i_A           25 TASVFDPM----SARIAADLGFECGILGGS-VASLQV-LAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYG---N   95 (287)
T ss_dssp             CEECCSHH----HHHHHHHTTCSCEEECHH-HHHHHH-HSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSS---S
T ss_pred             EecCCCHH----HHHHHHHcCCCEEEeCcH-HHHHHh-cCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC---C
Confidence            35555654    467888899999877511 111111 12223344566778888889999899999999999864   2


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCCCcCc--HHHHHHHHHhC--CCCeEEEecCC--CCHHHH--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKIPILK--YNFVYNLKKDF--PELEIIINGGI--KTKKEI--  201 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~~~~~--~~~i~~i~~~~--~~ipvi~nGgI--~s~~da--  201 (311)
                      .++..+.++.+.++|+++|.+-+... ..-|..+.   ..-+.+  .+.|+.++++.  +++-|++--|-  ...+++  
T Consensus        96 ~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~g---kl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~  172 (287)
T 3b8i_A           96 ALNVMRTVVELERAGIAALTIEDTLLPAQFGRKST---DLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQ  172 (287)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTT---CBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCC---CccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHH
Confidence            34577889999999999999986642 01122111   111111  23444444442  23555555444  112333  


Q ss_pred             --HHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         202 --DLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       202 --~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                        +.+.+. ||+|++= + +.++..++++.+.+
T Consensus       173 Ra~ay~eAGAd~i~~e-~-~~~~~~~~~i~~~~  203 (287)
T 3b8i_A          173 RTLAYQEAGADGICLV-G-VRDFAHLEAIAEHL  203 (287)
T ss_dssp             HHHHHHHTTCSEEEEE-C-CCSHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCEEEec-C-CCCHHHHHHHHHhC
Confidence              333333 9999984 2 34445666665543

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=94.35  E-value=0.29  Score=44.73  Aligned_cols=168  Identities=11%  Similarity=0.089  Sum_probs=96.2

Q ss_pred             EEecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCC
Q psy2386          50 FQVGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDD  127 (311)
Q Consensus        50 ~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~  127 (311)
                      +=+...|+-    .|++++++|||.|=+-- +.-  .+. -|+-...+-..+.+...+++|.+.+ +.||.+-+-.|+- 
T Consensus        42 ~~~~ayD~~----sA~i~e~aGfdai~vs~~~~a--~~~-lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg-  113 (318)
T 1zlp_A           42 LMPGVQDAL----SAAVVEKTGFHAAFVSGYSVS--AAM-LGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGG-  113 (318)
T ss_dssp             EEEEECSHH----HHHHHHHTTCSEEEECHHHHH--HHH-HCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSS-
T ss_pred             EEecCCCHH----HHHHHHHcCCCEEEECcHHHh--hHh-cCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCC-
Confidence            335556654    46788889999997752 111  111 1233334456677778888888888 9999999999964 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCC-CcCCCCCc-CcHHHHHHHHHhC--CCCeEEEecCCCCH----
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNP-KQNRKIPI-LKYNFVYNLKKDF--PELEIIINGGIKTK----  198 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g-~~~~~~~~-~~~~~i~~i~~~~--~~ipvi~nGgI~s~----  198 (311)
                       + .+...+.++.+.++|+++|.+-+... .--|..| ++  -.+. ...+.|+.++++.  +++-|++=.|-...    
T Consensus       114 -~-~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~--L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~  189 (318)
T 1zlp_A          114 -G-PLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKA--VVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLE  189 (318)
T ss_dssp             -S-HHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCC--BCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHH
T ss_pred             -C-HHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCc--cCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHH
Confidence             2 33678889999999999999986642 0112111 11  0110 0122344444432  23455555554422    


Q ss_pred             ---HHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         199 ---KEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       199 ---~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                         ++++.+.+. ||+|++= + +.++..++++.+.+
T Consensus       190 ~ai~Ra~Ay~eAGAd~i~~e-~-~~~~e~~~~i~~~l  224 (318)
T 1zlp_A          190 EGIRRANLYKEAGADATFVE-A-PANVDELKEVSAKT  224 (318)
T ss_dssp             HHHHHHHHHHHTTCSEEEEC-C-CCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCEEEEc-C-CCCHHHHHHHHHhc
Confidence               122223333 9999983 1 24445566665543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=94.35  E-value=0.09  Score=49.64  Aligned_cols=67  Identities=18%  Similarity=0.296  Sum_probs=52.7

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|++.|.++.-.    |.        +..-|+.++++++.+|++||++ |++.++++++.+.+. +|+|.+
T Consensus       155 ~~~a~~~~~~G~d~i~i~~~~----g~--------~~~~~e~i~~ir~~~~~~pviv-~~v~~~~~a~~a~~~Gad~I~v  221 (404)
T 1eep_A          155 IERVEELVKAHVDILVIDSAH----GH--------STRIIELIKKIKTKYPNLDLIA-GNIVTKEAALDLISVGADCLKV  221 (404)
T ss_dssp             HHHHHHHHHTTCSEEEECCSC----CS--------SHHHHHHHHHHHHHCTTCEEEE-EEECSHHHHHHHHTTTCSEEEE
T ss_pred             HHHHHHHHHCCCCEEEEeCCC----CC--------hHHHHHHHHHHHHHCCCCeEEE-cCCCcHHHHHHHHhcCCCEEEE
Confidence            567788889999999985321    11        1235788999999886799987 788999999998876 999999


Q ss_pred             e
Q psy2386         214 G  214 (311)
Q Consensus       214 g  214 (311)
                      |
T Consensus       222 g  222 (404)
T 1eep_A          222 G  222 (404)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=94.31  E-value=0.11  Score=46.42  Aligned_cols=80  Identities=19%  Similarity=0.226  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC--C---cHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI--N---SYDFV  134 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~--~---~~~~~  134 (311)
                      +.+-.+.|.+.||+.|||+-|+=            =+. .+.-.++|+.+   .+. +.|+.-.|..+.  +   +.+..
T Consensus       112 ~~~yl~~~k~lGF~~IEISdGti------------~l~-~~~~~~lI~~a---~~~-f~Vl~EvG~K~~~~~~~~~~~~~  174 (276)
T 1u83_A          112 VNEFHRYCTYFGCEYIEISNGTL------------PMT-NKEKAAYIADF---SDE-FLVLSEVGSKDAELASRQSSEEW  174 (276)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSSS------------CCC-HHHHHHHHHHH---TTT-SEEEEECSCCC------CCSTHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCcc------------cCC-HHHHHHHHHHH---Hhh-cEEeeeccccCccccCCCCHHHH
Confidence            44445677899999999995542            222 33334444443   334 788888887654  1   23467


Q ss_pred             HHHHHHHHHcCCCEEEEecCcc
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNA  156 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~  156 (311)
                      ++.++...++||+.|++-+|..
T Consensus       175 I~~~~~dLeAGA~~ViiEaRES  196 (276)
T 1u83_A          175 LEYIVEDMEAGAEKVITEARES  196 (276)
T ss_dssp             HHHHHHHHHHTEEEEEEC----
T ss_pred             HHHHHHHHHCCCcEEEEeeecc
Confidence            8899999999999999999963

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=94.29  E-value=1.5  Score=38.54  Aligned_cols=137  Identities=14%  Similarity=0.178  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---cCCCCCc
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---GIDDINS  130 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---g~~~~~~  130 (311)
                      |-.+..+...-+.+-++ .|++-+            ++|++.+-..+.+.+.++-.+++ +++|+--=..   -+.. . 
T Consensus        22 glg~~~~~d~Le~~g~y-ID~lKf------------g~Gt~~l~~~~~l~eki~l~~~~-gV~v~~GGTl~E~~~~q-g-   85 (251)
T 1qwg_A           22 GLPPKFVEDYLKVCGDY-IDFVKF------------GWGTSAVIDRDVVKEKINYYKDW-GIKVYPGGTLFEYAYSK-G-   85 (251)
T ss_dssp             SCCHHHHHHHHHHHGGG-CSEEEE------------CTTGGGGSCHHHHHHHHHHHHTT-TCEEEECHHHHHHHHHT-T-
T ss_pred             CCCHHHHHHHHHHhhhh-cceEEe------------cCceeeecCHHHHHHHHHHHHHc-CCeEECCcHHHHHHHHc-C-
Confidence            44566665555555455 677776            58888888999999999998886 7776542100   0001 1 


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHHHHHhCCCCeEEEec--------CCCCHHHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYNLKKDFPELEIIING--------GIKTKKEI  201 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~i~~~~~~ipvi~nG--------gI~s~~da  201 (311)
                        .+.++.+.+.+.|.+.|-|...+-.           .+..+| ++|+++++.  .+.|+..=        +..++++.
T Consensus        86 --~~~~yl~~~k~lGf~~iEiS~G~i~-----------l~~~~~~~~I~~~~~~--G~~v~~EvG~k~~~~~~~~~~~~~  150 (251)
T 1qwg_A           86 --KFDEFLNECEKLGFEAVEISDGSSD-----------ISLEERNNAIKRAKDN--GFMVLTEVGKKMPDKDKQLTIDDR  150 (251)
T ss_dssp             --CHHHHHHHHHHHTCCEEEECCSSSC-----------CCHHHHHHHHHHHHHT--TCEEEEEECCSSHHHHTTCCHHHH
T ss_pred             --cHHHHHHHHHHcCCCEEEECCCccc-----------CCHHHHHHHHHHHHHC--CCEEeeeccccCCcccCCCCHHHH
Confidence              2467888999999999999876531           122344 477777775  35555543        34455665


Q ss_pred             HHHH----hh-cCEEEE-eh------hhhhCC
Q psy2386         202 DLHL----NY-IDGVML-GR------EAYKNP  221 (311)
Q Consensus       202 ~~~l----~~-adgVmi-gR------a~l~~P  221 (311)
                      .+..    +. |+.||+ ||      |++.+-
T Consensus       151 I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~  182 (251)
T 1qwg_A          151 IKLINFDLDAGADYVIIEGRESGKGKGLFDKE  182 (251)
T ss_dssp             HHHHHHHHHHTCSEEEECCTTTCCSSTTBCTT
T ss_pred             HHHHHHHHHCCCcEEEEeeecccCCcccCCCC
Confidence            5544    33 999999 78      887766

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=94.18  E-value=0.12  Score=43.63  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=80.9

Q ss_pred             ccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          38 CLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        38 ~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      ...+-..+..+++=++|+ ...+.+..+.+.+.| .-+=+|.+--..          |-+|.+-+.=+ +..+-  +--+
T Consensus        24 ~~~~~~s~~~~ifll~g~-I~~L~~iv~~ik~~g-K~vivh~DlI~G----------Ls~d~~ai~fL-~~~~p--dGII   88 (188)
T 1vkf_A           24 MDSIGEIEPDVVFLLKSD-ILNLKFHLKILKDRG-KTVFVDMDFVNG----------LGEGEEAILFV-KKAGA--DGII   88 (188)
T ss_dssp             SSSCCCCCSSEEEECCEE-TTTHHHHHHHHHHTT-CEEEEEGGGEET----------CCSSHHHHHHH-HHHTC--SEEE
T ss_pred             hcccccCCCCEEEEEeCc-HHHHHHHHHHHHHCC-CeEEEecCcccc----------cCCCHHHHHHH-HhcCC--CEEE
Confidence            334444455666666665 355888888888876 666666443221          22333332222 22111  1111


Q ss_pred             EEE---------------EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         118 TVK---------------HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       118 svK---------------iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      |-|               -|.-.-+..   .+..-++.+.....|++-+-+..                +--+.++++  
T Consensus        89 sTk~~~i~~Akk~GL~tIqR~FliDs~---al~~~~~~I~~~kPD~iEiLPg~----------------v~p~~I~~v--  147 (188)
T 1vkf_A           89 TIKPKNYVVAKKNGIPAVLRFFALDSK---AVERGIEQIETLGVDVVEVLPGA----------------VAPKVARKI--  147 (188)
T ss_dssp             ESCHHHHHHHHHTTCCEEEEEECCSHH---HHHHHHHHHHHHTCSEEEEESGG----------------GHHHHHTTS--
T ss_pred             cCcHHHHHHHHHcCCEEeeEEEEEEeH---HHhhhhhhccccCCCeEeecCCC----------------chHHHHHHh--
Confidence            111               122111111   23344555556666665543221                123566666  


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                       . ++|||+.|+|+|.||+.+ ++. ||+|..+.--+++.
T Consensus       148 -~-~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~~  184 (188)
T 1vkf_A          148 -P-GRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWKM  184 (188)
T ss_dssp             -T-TSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHTC
T ss_pred             -c-CCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhCC
Confidence             4 799999999999999999 876 99999998776653

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=94.18  E-value=0.74  Score=39.24  Aligned_cols=171  Identities=9%  Similarity=0.104  Sum_probs=95.9

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecce--eccccc-CCchhccccCCCCCCeEEEecC-CCHHHHHHHHHHHHHcCCCEEEe
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMF--TTQAIL-GNKKHCLDFNAEEHPIAFQVGD-NEPKKLAKSAKIIQKWGYDEINL   77 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv--~a~~l~-~~~~~~l~~~~~~~p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~Idi   77 (311)
                      |+|+..==..+.+.|+..+-|- +.  |.+.+- .....+...-+ ..+..|-+|- .+++.+.   +++...+.|.|.|
T Consensus         7 Git~~eda~~a~~~GaD~iGfi-f~~~SpR~V~~~~a~~i~~~~~-~~~~~VgVfvn~~~~~i~---~~~~~~~ld~vQL   81 (203)
T 1v5x_A            7 GITRLEDALLAEALGAFALGFV-LAPGSRRRIAPEAARAIGEALG-PFVVRVGVFRDQPPEEVL---RLMEEARLQVAQL   81 (203)
T ss_dssp             CCCCHHHHHHHHHHTCSEEEEE-CCTTCTTBCCHHHHHHHHHHSC-SSSEEEEEESSCCHHHHH---HHHHHTTCSEEEE
T ss_pred             CCCcHHHHHHHHHcCCCEEEEE-ecCCCCCcCCHHHHHHHHHhCC-CCCCEEEEEeCCCHHHHH---HHHHhhCCCEEEE
Confidence            5666666677778885322222 21  222221 11111222112 2233344454 4555554   4556788999999


Q ss_pred             ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc
Q psy2386          78 NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF  157 (311)
Q Consensus        78 N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~  157 (311)
                      |             |.   .+|+.+.++    +.  ++|+.--+++....        ++  .+.+..+|++.+.+..  
T Consensus        82 H-------------G~---e~~~~~~~l----~~--~~~vika~~v~~~~--------~l--~~~~~~~d~~LlD~~~--  127 (203)
T 1v5x_A           82 H-------------GE---EPPEWAEAV----GR--FYPVIKAFPLEGPA--------RP--EWADYPAQALLLDGKR--  127 (203)
T ss_dssp             C-------------SC---CCHHHHHHH----TT--TSCEEEEEECSSSC--------CG--GGGGSSCSEEEEECSS--
T ss_pred             C-------------CC---CCHHHHHHh----cc--CCCEEEEEEcCChH--------hh--hhhhcCCCEEEEcCCC--
Confidence            9             11   356655543    22  57877666764221        11  1233348999887532  


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                        |-+|+      ..||+.+..+.. . +.|++..||+ +++.+.+.+.. ++||=+.+|.-..|-
T Consensus       128 --gGtG~------~fdW~~l~~~~~-~-~~p~~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~pG  182 (203)
T 1v5x_A          128 --PGSGE------AYPRAWAKPLLA-T-GRRVILAGGI-APENLEEVLALRPYALDLASGVEEAPG  182 (203)
T ss_dssp             --TTSCC------CCCGGGGHHHHH-T-TSCEEECSSC-CSTTHHHHHHHCCSEEEESGGGEEETT
T ss_pred             --CCCCC------ccCHHHHHhhhc-c-CCcEEEECCC-CHHHHHHHHhcCCCEEEeCCceecCCC
Confidence              22332      379998877322 3 5799999999 46777666642 999999999864443

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=94.17  E-value=0.28  Score=44.69  Aligned_cols=126  Identities=13%  Similarity=0.002  Sum_probs=77.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+  .+||.+-+  |..   +..
T Consensus        25 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGv--g~~---~t~   89 (311)
T 3h5d_A           25 INFDAIPALIEHLLAHHTDGILLAG----------TTAESPTLTHDEELELFAAVQKVVNGRVPLIAGV--GTN---DTR   89 (311)
T ss_dssp             BCTTHHHHHHHHHHHTTCCCEEESS----------TTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEEC--CCS---SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECc----------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeC--CCc---CHH
Confidence            3667888888988899999999872          233333345555567777777765  47888743  322   234


Q ss_pred             HHHHHHHHHHHcCC-CEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGC-RTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~-~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+ |++.+..-.  +...+       ...-+++.+++.++. ++||+ .|     |--.+++.+.++.
T Consensus        90 ~ai~la~~A~~~Ga~davlv~~P~--y~~~s-------~~~l~~~f~~va~a~-~lPiilYn~P~~tg~~l~~~~~~~La  159 (311)
T 3h5d_A           90 DSIEFVKEVAEFGGFAAGLAIVPY--YNKPS-------QEGMYQHFKAIADAS-DLPIIIYNIPGRVVVELTPETMLRLA  159 (311)
T ss_dssp             HHHHHHHHHHHSCCCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHSC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcEEEEcCCC--CCCCC-------HHHHHHHHHHHHHhC-CCCEEEEecccccCCCCCHHHHHHHh
Confidence            67899999999997 999876432  11100       001234566666665 57754 44     3334555555443

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=94.16  E-value=1.4  Score=41.75  Aligned_cols=154  Identities=9%  Similarity=0.008  Sum_probs=93.2

Q ss_pred             CCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc---ccceeEE
Q psy2386          46 HPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS---VEIDITV  119 (311)
Q Consensus        46 ~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~---~~~pvsv  119 (311)
                      .|+++=+=   |+ +....+.++.+.++|+.+|.|-=....+|.+....|..| -..+...+=|++++.+   .+.++.|
T Consensus       153 lPviaD~DtGyG~-~~~v~~tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~l-v~~~e~~~rI~Aa~~A~~~~~~d~~I  230 (435)
T 3lg3_A          153 LPIVADAEAGFGG-VLNAFELMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVL-VPTQEAIQKLVAARLAADVLGVPTLL  230 (435)
T ss_dssp             CCEEEECTTCSSS-HHHHHHHHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEE-CCHHHHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCeEEECCCCCCC-cHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCCee-cCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            88998883   54 446788889999999999999866644444433233344 4444444444444443   3667777


Q ss_pred             EEeccCCC----------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCc
Q psy2386         120 KHRIGIDD----------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI  171 (311)
Q Consensus       120 KiR~g~~~----------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~  171 (311)
                      =-|..-..                            ....++.++-++.+.+ |+|.|-+|+..                
T Consensus       231 iARTDa~aa~l~~s~~d~rD~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E~~~----------------  293 (435)
T 3lg3_A          231 IARTDADAADLLTSDCDPYDREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCETST----------------  293 (435)
T ss_dssp             EEEECTTTCCEESCCCCGGGGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEECCSS----------------
T ss_pred             EEEcCCccccccccccccccchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEecCCC----------------
Confidence            67764210                            0335667788888888 99999998664                


Q ss_pred             CcHHHHHHHHHh----CCCCeEEEecC-CCC------HHHHHHHHh---h--cCEEEEehhhh
Q psy2386         172 LKYNFVYNLKKD----FPELEIIINGG-IKT------KKEIDLHLN---Y--IDGVMLGREAY  218 (311)
Q Consensus       172 ~~~~~i~~i~~~----~~~ipvi~nGg-I~s------~~da~~~l~---~--adgVmigRa~l  218 (311)
                      .+.+.++++++.    +|.-++.+|.- .++      .+++..+.+   .  ...|.++-+.+
T Consensus       294 ~~~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~~~~~d~~~~~f~~eLa~lG~~~v~~~la~~  356 (435)
T 3lg3_A          294 PDLALAKRFADAVHAQFPGKLLAYNCSPSFNWKKNLTDQQIASFQDELSAMGYKYQFITLAGI  356 (435)
T ss_dssp             CCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHHSCHHHHHHHHHHHHHTTEEEEEETTHHH
T ss_pred             CCHHHHHHHHHHhccccCCeEEEeCCCCCccccccCCHHHHHHHHHHHHHcCCcEEEeCcHHH
Confidence            256666666554    44333444442 233      445544432   2  66777775553

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=94.10  E-value=0.42  Score=44.54  Aligned_cols=100  Identities=15%  Similarity=0.154  Sum_probs=65.1

Q ss_pred             HhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc--------ccCC------------------
Q psy2386         109 MRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL--------KKLN------------------  162 (311)
Q Consensus       109 v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~--------~G~~------------------  162 (311)
                      +.+....|..+.+-.+.+.    +...++++++++.|++.|.|+--+...        +++.                  
T Consensus       117 v~~~~~~~~~~QLy~~~d~----~~~~~~~~~a~~~G~~ai~it~d~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~  192 (370)
T 1gox_A          117 VASTGPGIRFFQLYVYKDR----NVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKM  192 (370)
T ss_dssp             HHTTCCCCEEEEECCBSSH----HHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC--
T ss_pred             HHhhcCCCceEEEecCCCc----hHHHHHHHHHHHCCCCEEEEeCCCCcccccHHHHHhccCCCcccchhhhhhhhhhcc
Confidence            3333335666655443332    245788999999999998876332100        1110                  


Q ss_pred             ----CCcC------CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         163 ----PKQN------RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       163 ----g~~~------~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                          |..-      ...+..+|+.++++++.. ++||+. +++.+++++..+.+. +|+|.++
T Consensus       193 ~~~~g~~~~~~v~~~~~~~~~~~~i~~l~~~~-~~pv~v-K~~~~~e~a~~a~~~Gad~I~vs  253 (370)
T 1gox_A          193 DKANDSGLSSYVAGQIDRSLSWKDVAWLQTIT-SLPILV-KGVITAEDARLAVQHGAAGIIVS  253 (370)
T ss_dssp             -------HHHHHHHTBCTTCCHHHHHHHHHHC-CSCEEE-ECCCSHHHHHHHHHTTCSEEEEC
T ss_pred             ccccCccHHHHHHhhcCccchHHHHHHHHHHh-CCCEEE-EecCCHHHHHHHHHcCCCEEEEC
Confidence                0000      012345789999999998 799985 778999999999887 9999994

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=94.06  E-value=0.65  Score=38.99  Aligned_cols=84  Identities=13%  Similarity=0.031  Sum_probs=54.8

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +++-+-..+.++..+.++.+.+ |+|.|+++++.  .  ..  .|      +    ++++++++.. +.|+.+-+-.. +
T Consensus         3 li~a~d~~~~~~~~~~~~~~~~-~v~~iev~~~~--~--~~--~g------~----~~i~~l~~~~~~~~i~~~l~~~-d   64 (207)
T 3ajx_A            3 LQVAIDLLSTEAALELAGKVAE-YVDIIELGTPL--I--KA--EG------L----SVITAVKKAHPDKIVFADMKTM-D   64 (207)
T ss_dssp             EEEEECCSCHHHHHHHHHHHGG-GCSEEEECHHH--H--HH--HC------T----HHHHHHHHHSTTSEEEEEEEEC-S
T ss_pred             EEEEeCCCCHHHHHHHHHHhhc-cCCEEEECcHH--H--Hh--hC------H----HHHHHHHHhCCCCeEEEEEEec-C
Confidence            4555556678887777777766 78999996532  1  11  12      2    3566777766 77887633332 2


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      -      ...+++.+.++|+|.+++|+-.
T Consensus        65 i------~~~~~~~a~~~Gad~v~vh~~~   87 (207)
T 3ajx_A           65 A------GELEADIAFKAGADLVTVLGSA   87 (207)
T ss_dssp             C------HHHHHHHHHHTTCSEEEEETTS
T ss_pred             c------cHHHHHHHHhCCCCEEEEeccC
Confidence            1      1245788899999999999753

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=94.05  E-value=0.16  Score=46.11  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=43.5

Q ss_pred             CCCeEEEecCCCH------------HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccC---ChHHHHHHHHHH
Q psy2386          45 EHPIAFQVGDNEP------------KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT---KPLLVSDCIKAM  109 (311)
Q Consensus        45 ~~p~~~Ql~g~~~------------~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~---~~~~~~~iv~~v  109 (311)
                      .+|.|+=+.--+|            +...+.|+...+.|+|.||||.-.--       -|+....   ..+.+..+++++
T Consensus        38 ~~~~iMgilNvTPDSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgeStr-------Pga~~v~~~eE~~RvvpvI~~l  110 (297)
T 1tx2_A           38 EKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTR-------PGFAKVSVEEEIKRVVPMIQAV  110 (297)
T ss_dssp             SSCEEEEECCCCCCTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC-----------CCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEeCCCCccccCCccCCHHHHHHHHHHHHHcCCCEEEECCCcCC-------CCCCCCCHHHHHHHHHHHHHHH
Confidence            4566666554433            55555666667789999999964421       1222222   334455566888


Q ss_pred             hccccceeEEEEe
Q psy2386         110 RDSVEIDITVKHR  122 (311)
Q Consensus       110 ~~~~~~pvsvKiR  122 (311)
                      ++.+++|++|-..
T Consensus       111 ~~~~~vpiSIDT~  123 (297)
T 1tx2_A          111 SKEVKLPISIDTY  123 (297)
T ss_dssp             HHHSCSCEEEECS
T ss_pred             HhcCCceEEEeCC
Confidence            8877999999643

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=93.96  E-value=0.91  Score=41.21  Aligned_cols=127  Identities=7%  Similarity=0.082  Sum_probs=80.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~  133 (311)
                      =|.+.+.+-++.+.+.|+|+|=++.          ..|-+..-..+.-.++++.+.+.+ .+||.+-+  |-.   +..+
T Consensus        26 iD~~~l~~lv~~li~~Gv~Gl~v~G----------tTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGv--g~~---~t~~   90 (313)
T 3dz1_A           26 IDDVSIDRLTDFYAEVGCEGVTVLG----------ILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGV--SAP---GFAA   90 (313)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEEST----------GGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEEC--CCS---SHHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEeCc----------cCcChhhCCHHHHHHHHHHHHHHcCCCcEEEec--CCC---CHHH
Confidence            4788899999999899999998871          223333334454466667666655 57877743  322   2346


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEE-Ee-----cCCCCHHHHHHHHh
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEII-IN-----GGIKTKKEIDLHLN  206 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi-~n-----GgI~s~~da~~~l~  206 (311)
                      .+++++.+++.|+|++.+.+-..     .+.     ...-+++.++|+++++ ++||+ +|     |---+++.+.++.+
T Consensus        91 ai~la~~A~~~Gadavlv~~P~~-----~~s-----~~~l~~~f~~va~a~~~~lPiilYn~P~~tg~~l~~~~~~~La~  160 (313)
T 3dz1_A           91 MRRLARLSMDAGAAGVMIAPPPS-----LRT-----DEQITTYFRQATEAIGDDVPWVLQDYPLTLSVVMTPKVIRQIVM  160 (313)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCTT-----CCS-----HHHHHHHHHHHHHHHCTTSCEEEEECHHHHCCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCCC-----CCC-----HHHHHHHHHHHHHhCCCCCcEEEEeCccccCcCCCHHHHHHHHH
Confidence            78999999999999998753210     000     0012456677777762 28875 33     44456777766654

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=93.95  E-value=0.19  Score=46.94  Aligned_cols=108  Identities=11%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      .++..+++|+. . -..-++..-+.|+..-+...  .  .   ..+..+.++..|+|++.+|-.... .-..+...   +
T Consensus       123 s~~~~le~~~~-~-~~~v~r~~P~~~~ianig~~--~--~---~e~~~~~ve~~~adal~ihln~~q-e~~~p~Gd---~  189 (365)
T 3sr7_A          123 SYSTALKNPDD-T-SYQVKKSRPHLLLATNIGLD--K--P---YQAGLQAVRDLQPLFLQVHINLMQ-ELLMPEGE---R  189 (365)
T ss_dssp             ------------------------CCEEEEEETT--S--C---HHHHHHHHHHHCCSCEEEEECHHH-HHTSSSSC---C
T ss_pred             cccccccCccc-c-ceEehhhCCCCcEEEEeCCC--C--C---HHHHHHHHHhcCCCEEEEeccccc-cccCCCCC---C
Confidence            34455677774 1 11112222356665544432  1  1   235677788999999999966421 11111100   0


Q ss_pred             cC-cH-HHHHHHHHhCCCCeEEEecCC---CCHHHHHHHHhh-cCEEEE
Q psy2386         171 IL-KY-NFVYNLKKDFPELEIIINGGI---KTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       171 ~~-~~-~~i~~i~~~~~~ipvi~nGgI---~s~~da~~~l~~-adgVmi  213 (311)
                      .. +| +.|+++++.+ ++||+.=| |   .++++++.+.+. +|+|.+
T Consensus       190 ~~~~~~~~I~~l~~~~-~~PVivK~-vg~g~s~e~A~~l~~aGad~I~V  236 (365)
T 3sr7_A          190 EFRSWKKHLSDYAKKL-QLPFILKE-VGFGMDVKTIQTAIDLGVKTVDI  236 (365)
T ss_dssp             CCHHHHHHHHHHHHHC-CSCEEEEE-CSSCCCHHHHHHHHHHTCCEEEC
T ss_pred             cHHHHHHHHHHHHHhh-CCCEEEEE-CCCCCCHHHHHHHHHcCCCEEEE
Confidence            11 34 7899999998 79998875 6   799999999876 999988

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=93.94  E-value=0.42  Score=43.74  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=68.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +++.+.+.++.+++.++.|+.|.+-.. +.     .+.+.++.+.++|++.|.+|+...                 .+++
T Consensus        47 ~~~~~~~~i~~i~~~~~~p~gvnl~~~-~~-----~~~~~~~~a~~~g~d~V~~~~g~p-----------------~~~i  103 (332)
T 2z6i_A           47 PKEVVKANIDKIKSLTDKPFGVNIMLL-SP-----FVEDIVDLVIEEGVKVVTTGAGNP-----------------SKYM  103 (332)
T ss_dssp             CHHHHHHHHHHHHHHCCSCEEEEECTT-ST-----THHHHHHHHHHTTCSEEEECSSCG-----------------GGTH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEecCC-CC-----CHHHHHHHHHHCCCCEEEECCCCh-----------------HHHH
Confidence            678888889999887788988776542 21     135778888999999999997531                 2346


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE-eh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML-GR  215 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi-gR  215 (311)
                      +++++.  ++||+.  .|.+.+++..+.+. +|+|.+ |+
T Consensus       104 ~~l~~~--g~~v~~--~v~~~~~a~~~~~~GaD~i~v~g~  139 (332)
T 2z6i_A          104 ERFHEA--GIIVIP--VVPSVALAKRMEKIGADAVIAEGM  139 (332)
T ss_dssp             HHHHHT--TCEEEE--EESSHHHHHHHHHTTCSCEEEECT
T ss_pred             HHHHHc--CCeEEE--EeCCHHHHHHHHHcCCCEEEEECC
Confidence            677663  688885  47899999888776 999999 54

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=93.86  E-value=0.43  Score=41.06  Aligned_cols=97  Identities=13%  Similarity=0.088  Sum_probs=62.1

Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCc-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINS-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      +.++.+++.+++|+..-++.++++... .....+.++.+.++|++.|++|.....  .       ..+....+.++++++
T Consensus        59 ~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~V~l~~~~~~--~-------~~~~~~~~~i~~i~~  129 (234)
T 1yxy_A           59 RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRD--R-------HDGLDIASFIRQVKE  129 (234)
T ss_dssp             HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSC--C-------TTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCEEEEcccccC--C-------CCCccHHHHHHHHHH
Confidence            346777777889983223333321110 001246678889999999999975420  0       000023578999998


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      .+++++|+.  ++.+++++..+.+. +|.|
T Consensus       130 ~~~~~~v~~--~~~t~~ea~~a~~~Gad~i  157 (234)
T 1yxy_A          130 KYPNQLLMA--DISTFDEGLVAHQAGIDFV  157 (234)
T ss_dssp             HCTTCEEEE--ECSSHHHHHHHHHTTCSEE
T ss_pred             hCCCCeEEE--eCCCHHHHHHHHHcCCCEE
Confidence            876677665  78899999888876 9988

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=93.85  E-value=1.9  Score=40.89  Aligned_cols=154  Identities=10%  Similarity=0.064  Sum_probs=90.2

Q ss_pred             CCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeE
Q psy2386          45 EHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDIT  118 (311)
Q Consensus        45 ~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvs  118 (311)
                      ..|+++=+=   |+ +....+.++.+.++|+.+|.|-=..+.+|.+....|-.|..-.+.+.+|. +++.+.   +.++.
T Consensus       145 ~lPIiaD~DtGfG~-~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~-AAr~A~~~~g~d~v  222 (433)
T 3eol_A          145 FAPIVADAEAGFGD-PLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLN-AARLAADVMGTPTL  222 (433)
T ss_dssp             CCCEEEECC---CC-HHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHH-HHHHHHHHHTCCCE
T ss_pred             CCCeEEECCCCCCC-cHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHH-HHHHHHHhcCCCEE
Confidence            589998774   44 45688888999999999999976665555444333444444445555544 444332   56777


Q ss_pred             EEEeccCCC------------------------------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386         119 VKHRIGIDD------------------------------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK  168 (311)
Q Consensus       119 vKiR~g~~~------------------------------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~  168 (311)
                      |=-|..-..                              ....++.++-++.+.+ |+|.|-+|+..             
T Consensus       223 IiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~~~-------------  288 (433)
T 3eol_A          223 IVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMETSK-------------  288 (433)
T ss_dssp             EEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECCSS-------------
T ss_pred             EEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeCCC-------------
Confidence            766764210                              0335677788888888 99999998764             


Q ss_pred             CCcCcHHHHHHHHHh----CCCCeEEEecCC--C------CHHHHHHH---Hhh--cCEEEEehhhh
Q psy2386         169 IPILKYNFVYNLKKD----FPELEIIINGGI--K------TKKEIDLH---LNY--IDGVMLGREAY  218 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~----~~~ipvi~nGgI--~------s~~da~~~---l~~--adgVmigRa~l  218 (311)
                         .+.+.++++.+.    +| .++++.|.-  .      +.+++..+   |..  +..|.++-+++
T Consensus       289 ---~~~eei~~f~~~v~~~~P-~~~L~~~~sPsfnw~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~  351 (433)
T 3eol_A          289 ---PDLAQARRFAEAVHKAHP-GKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGF  351 (433)
T ss_dssp             ---CCHHHHHHHHHHHHHHST-TCCEEEECCSSSCHHHHSCHHHHHHHHHHHHHHTEEEEEETTHHH
T ss_pred             ---CCHHHHHHHHHHhcccCC-CcccccCCCCCCcccccCChhHHhHHHHHHHHcCCeEEEeCcHHH
Confidence               256666666655    34 333433332  2      33344333   222  77888876554

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=93.79  E-value=0.52  Score=43.53  Aligned_cols=111  Identities=18%  Similarity=0.176  Sum_probs=69.9

Q ss_pred             CCCCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          43 AEEHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        43 ~~~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.+.|+.+-|.       |.++++..+.++.++++|+|.|++..|.-.+.....       ..+..-.+.++.+++.+++
T Consensus       217 G~d~pV~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~-------~~~~~~~~~~~~ir~~~~i  289 (349)
T 3hgj_A          217 PRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIP-------LAPGFQVPFADAVRKRVGL  289 (349)
T ss_dssp             CTTSCEEEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCC-------CCTTTTHHHHHHHHHHHCC
T ss_pred             cCCceEEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccC-------CCccccHHHHHHHHHHcCc
Confidence            56789999887       567899999999999999999999865322111000       0111123456677777788


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      ||.+-=  +..+       .+-+..+.+.| +|.|.+ ||...              .|-+++.++++.+
T Consensus       290 PVi~~G--gi~t-------~e~a~~~l~~G~aD~V~i-GR~~l--------------anPdl~~k~~~~l  335 (349)
T 3hgj_A          290 RTGAVG--LITT-------PEQAETLLQAGSADLVLL-GRVLL--------------RDPYFPLRAAKAL  335 (349)
T ss_dssp             EEEECS--SCCC-------HHHHHHHHHTTSCSEEEE-STHHH--------------HCTTHHHHHHHHT
T ss_pred             eEEEEC--CCCC-------HHHHHHHHHCCCceEEEe-cHHHH--------------hCchHHHHHHHHC
Confidence            986521  1111       24455666666 998877 66431              1335577777765

>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A

Probab=93.70  E-value=0.39  Score=44.12  Aligned_cols=134  Identities=9%  Similarity=0.010  Sum_probs=85.5

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccC
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGI  125 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~  125 (311)
                      |+-..+.|.+++.+    +.+.+.||..+-+-.|                  ++ -.+.++++|+.+ ++.+.|-..-+|
T Consensus       121 ~~~~~~~g~~~e~~----~~~~~~G~~~~KiKvg------------------~~-d~~~v~avr~~~~~~~l~vDaN~~~  177 (342)
T 2okt_A          121 AYGATASGLSNKQL----ESLKATKPTRIKLKWT------------------PQ-IMHQIRVLRELDFHFQLVIDANESL  177 (342)
T ss_dssp             ECEEEESSCCHHHH----HHHHHHCCSEEEEECC------------------TT-HHHHHHHHTTSSSCCEEEEECTTCC
T ss_pred             eeeEEEecCCHHHH----HHHHHcCCcEEEEEeC------------------HH-HHHHHHHHHHhCCCCeEEEECCCCC
Confidence            44444524444555    3334569999998654                  23 347788888876 344555555566


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l  205 (311)
                      +..    +. ++++.+++.++.+|-               +. .++.|++..++  +.. .+||.+.=.+.+..|+.+++
T Consensus       178 ~~~----~A-~~~~~l~~~~i~~iE---------------qP-~~~~d~~~~~~--~~~-~ipIa~dEs~~~~~~~~~~i  233 (342)
T 2okt_A          178 DRQ----DF-TQLQLLAREQVLYIE---------------EP-FKDISMLDEVA--DGT-IPPIALDEKATSLLDIINLI  233 (342)
T ss_dssp             CGG----GH-HHHHHHGGGCEEEEE---------------CC-CSSGGGGGGSC--TTS-SCCEEESTTCCCHHHHHHHH
T ss_pred             CHH----HH-HHHHHHhhCCCcEEE---------------CC-CCCccHHHHHH--hcC-CCCEEecCCCCCHHHHHHHH
Confidence            542    46 899999998877762               10 11224444444  444 69999988999999999998


Q ss_pred             hh--cCEEEEehhhhhCCcchHHh
Q psy2386         206 NY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       206 ~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      +.  +|.|++==+-.+...=..++
T Consensus       234 ~~~a~d~i~~k~~~~GGit~~~~i  257 (342)
T 2okt_A          234 ELYNVKVVVLKPFRLGGIDKVQTA  257 (342)
T ss_dssp             HHSCCCEEEECHHHHTSGGGHHHH
T ss_pred             HhCCCCEEEEChhhcCCHHHHHHH
Confidence            75  99999865555555433333

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=93.70  E-value=1  Score=42.25  Aligned_cols=132  Identities=9%  Similarity=0.025  Sum_probs=85.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEE---------Ee--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEI---------NL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~I---------di--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      -..+.+....+.+++.|...+         |+  ..++|.-+     -||.-++|..++.++-+     .++||.+|.-.
T Consensus        98 l~~e~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~K-----IgS~~~~N~pLL~~va~-----~gKPViLStGm  167 (385)
T 1vli_A           98 MPAEWILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFK-----IASYEINHLPLLKYVAR-----LNRPMIFSTAG  167 (385)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEE-----ECGGGTTCHHHHHHHHT-----TCSCEEEECTT
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEE-----ECcccccCHHHHHHHHh-----cCCeEEEECCC
Confidence            355777777788888775543         21  24677765     47777899998766543     58999998654


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCC-CEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC-HHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGC-RTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT-KKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~-~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s-~~da  201 (311)
                      .     +.+++...++.+.+.|. +.+.+|+-+. |.-       ....+|+..|..+++.+|++||..++--.. ..-+
T Consensus       168 a-----Tl~Ei~~Ave~i~~~Gn~~iiLlhc~s~-YPt-------p~~~~nL~aI~~Lk~~f~~lpVG~SdHt~G~~~~~  234 (385)
T 1vli_A          168 A-----EISDVHEAWRTIRAEGNNQIAIMHCVAK-YPA-------PPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAP  234 (385)
T ss_dssp             C-----CHHHHHHHHHHHHTTTCCCEEEEEECSS-SSC-------CGGGCCTTHHHHHHHHSTTSEEEEEECCSSSSHHH
T ss_pred             C-----CHHHHHHHHHHHHHCCCCcEEEEeccCC-CCC-------ChhhcCHHHHHHHHHHcCCCCEEeCCCCCCchHHH
Confidence            2     24466777888889998 6666785432 211       122368889999999876799976653333 3444


Q ss_pred             HHHHhh-cC
Q psy2386         202 DLHLNY-ID  209 (311)
Q Consensus       202 ~~~l~~-ad  209 (311)
                      ...... |+
T Consensus       235 ~AAvAlGA~  243 (385)
T 1vli_A          235 CAAVRLGAK  243 (385)
T ss_dssp             HHHHHTTCS
T ss_pred             HHHHHcCCC
Confidence            444433 66

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=93.69  E-value=0.17  Score=47.00  Aligned_cols=67  Identities=18%  Similarity=0.267  Sum_probs=50.9

Q ss_pred             HHHHHHHHHc--CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         135 RDFVGTVSSA--GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       135 ~e~~~~l~~~--G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      .+.++.+.+.  |++.+.+|...    |.        +..-|+.++++++..|++||+. |+|.|+++++.+.+. +|+|
T Consensus       120 ~~~~~~l~~~~~g~~~i~i~~~~----g~--------~~~~~~~i~~lr~~~~~~~vi~-g~v~t~e~A~~a~~aGaD~I  186 (351)
T 2c6q_A          120 FEQLEQILEAIPQVKYICLDVAN----GY--------SEHFVEFVKDVRKRFPQHTIMA-GNVVTGEMVEELILSGADII  186 (351)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECSC----TT--------BHHHHHHHHHHHHHCTTSEEEE-EEECSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHhccCCCCEEEEEecC----CC--------cHHHHHHHHHHHHhcCCCeEEE-EeCCCHHHHHHHHHhCCCEE
Confidence            3556666666  99999988432    11        1124789999999986789884 789999999999987 9999


Q ss_pred             EEe
Q psy2386         212 MLG  214 (311)
Q Consensus       212 mig  214 (311)
                      .++
T Consensus       187 ~v~  189 (351)
T 2c6q_A          187 KVG  189 (351)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            886

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=93.67  E-value=4  Score=37.00  Aligned_cols=149  Identities=13%  Similarity=0.048  Sum_probs=98.9

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE-
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH-  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi-  121 (311)
                      ....|+++++++++.++..+.++.+++.|+|+|=+  -.|..+.          -+.+-+.+-.++|.+++++||.+=- 
T Consensus        91 ~grvpViaGvg~~~t~~ai~la~~A~~~Gadavlv--~~P~y~~----------~s~~~l~~~f~~va~a~~lPiilYn~  158 (315)
T 3na8_A           91 AHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVMV--LPISYWK----------LNEAEVFQHYRAVGEAIGVPVMLYNN  158 (315)
T ss_dssp             TTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE--CCCCSSC----------CCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEE--CCCCCCC----------CCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            45689999999999999999999999999999988  4665431          2457778888888888899998764 


Q ss_pred             --eccCCCCCcHHHHHHHHHHH-HHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCC
Q psy2386         122 --RIGIDDINSYDFVRDFVGTV-SSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIK  196 (311)
Q Consensus       122 --R~g~~~~~~~~~~~e~~~~l-~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~  196 (311)
                        |.|.+-.      .+++.+| .+.+ +-+|.-.                  ..|+..+.++.+..+ ++.|+ +|+=.
T Consensus       159 P~~tg~~l~------~~~~~~L~a~~pnIvgiKds------------------sgd~~~~~~~~~~~~~~f~v~-~G~D~  213 (315)
T 3na8_A          159 PGTSGIDMS------VELILRIVREVDNVTMVKES------------------TGDIQRMHKLRLLGEGRVPFY-NGCNP  213 (315)
T ss_dssp             HHHHSCCCC------HHHHHHHHHHSTTEEEEEEC------------------SSCHHHHHHHHHHTTTCSCEE-ECCGG
T ss_pred             cchhCcCCC------HHHHHHHHhcCCCEEEEECC------------------CCCHHHHHHHHHHcCCCEEEE-eCchH
Confidence              3444332      3555666 5542 2222211                  026777778877653 35544 44422


Q ss_pred             CHHHHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         197 TKKEIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       197 s~~da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                         .+...+. +++|++.+.+.+ -|..+.++.+.+.
T Consensus       214 ---~~l~~l~~G~~G~is~~an~-~P~~~~~l~~a~~  246 (315)
T 3na8_A          214 ---LALEAFVAGAKGWCSAAPNL-IPTLNGQLYQAVL  246 (315)
T ss_dssp             ---GHHHHHHHTCSEEEESGGGT-CHHHHHHHHHHHH
T ss_pred             ---HHHHHHHCCCCEEEechhhh-CHHHHHHHHHHHh
Confidence               1334443 499999998765 4777777666543

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=93.62  E-value=1.6  Score=38.47  Aligned_cols=87  Identities=24%  Similarity=0.259  Sum_probs=52.1

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec-cCCC---
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-GIDD---  127 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~-g~~~---  127 (311)
                      ++..+++.    |..+++.|+|-|||+.+=..     +  |  |  .|..  ..++.+++.+++||-|=||+ +-+.   
T Consensus         6 vc~~s~~~----a~~A~~~GAdRIELc~~L~~-----G--G--l--TPS~--g~i~~~~~~~~ipv~vMIRPR~GdF~Ys   68 (256)
T 1twd_A            6 ICCYSMEC----ALTAQQNGADRVELCAAPKE-----G--G--L--TPSL--GVLKSVRQRVTIPVHPIIRPRGGDFCYS   68 (256)
T ss_dssp             EEESSHHH----HHHHHHTTCSEEEECBCGGG-----T--C--B--CCCH--HHHHHHHHHCCSCEEEBCCSSSSCSCCC
T ss_pred             EEeCCHHH----HHHHHHcCCCEEEEcCCccc-----C--C--C--CCCH--HHHHHHHHHcCCceEEEECCCCCCCcCC
Confidence            44445444    34566789999999843211     1  1  1  2322  23455566779999999987 2221   


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      +.+.+...+=++.+.+.|++.|.+-.-|
T Consensus        69 ~~E~~~M~~Di~~~~~~GadGvV~G~Lt   96 (256)
T 1twd_A           69 DGEFAAILEDVRTVRELGFPGLVTGVLD   96 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEECCBC
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEeeEC
Confidence            1223344455667889999999875443

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=93.60  E-value=1  Score=41.11  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-ccC-CC----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IGI-DD----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK  168 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~-~~----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~  168 (311)
                      +..|-+...++++...+. ++.|-.-+- +|- .+    +..+-+..+..+.+++.|+|.|.+.=.|. -+.|..+   .
T Consensus       111 ~eENi~~Tk~vv~~ah~~-gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~-HG~Yk~~---~  185 (323)
T 2isw_A          111 FDENVRITKEVVAYAHAR-SVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTS-HGAYKFK---S  185 (323)
T ss_dssp             HHHHHHHHHHHHHHHHTT-TCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCC-SSSBCCC---C
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCcc-ccccCCC---C
Confidence            345677777888777653 544443332 111 11    11111234555556789999998754442 1112200   1


Q ss_pred             CCc--CcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         169 IPI--LKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       169 ~~~--~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      .+.  .|++.+++|++.+ ++|++.-||=.-|++..+.++.
T Consensus       186 ~p~~~L~~~~L~~I~~~~-~vpLVlHGgSsvp~~~~~~~~~  225 (323)
T 2isw_A          186 ESDIRLAIDRVKTISDLT-GIPLVMHGSSSVPKDVKDMINK  225 (323)
T ss_dssp             ----CCCCHHHHHHHHHH-CSCEEECSCCCCCHHHHHHHHH
T ss_pred             CcccccCHHHHHHHHHHh-CCCeEEECCCCCCHHHHHHHHH
Confidence            234  7899999999998 7999999988666666666654

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=93.48  E-value=0.5  Score=43.67  Aligned_cols=124  Identities=11%  Similarity=0.033  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      =|.+.+.+-++.+.+.|+|+|=++          +..|-+..-..+.-.++++. ...-.+||.+-+-  -.   +.++.
T Consensus        44 ID~~~l~~lv~~li~~Gv~Gl~v~----------GtTGE~~~Ls~eEr~~vi~~-~~~grvpViaGvg--~~---st~ea  107 (344)
T 2hmc_A           44 PDFDALVRKGKELIADGMSAVVYC----------GSMGDWPLLTDEQRMEGVER-LVKAGIPVIVGTG--AV---NTASA  107 (344)
T ss_dssp             BCHHHHHHHHHHHHHTTCCCEEES----------SGGGTGGGSCHHHHHHHHHH-HHHTTCCEEEECC--CS---SHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeC----------ccCcChhhCCHHHHHHHHHH-HhCCCCcEEEecC--CC---CHHHH
Confidence            478889999998889999999887          22333333344444566665 2222678887543  22   23367


Q ss_pred             HHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCcCcHHHHHHHHH-hCCCCeEE-Ee----cCCCCHHHHHHH
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPILKYNFVYNLKK-DFPELEII-IN----GGIKTKKEIDLH  204 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~~~~~~i~~i~~-~~~~ipvi-~n----GgI~s~~da~~~  204 (311)
                      +++++.+++.|+|++.+..-.  |.. .+       ...-+++.++|++ +. ++||+ +|    |---+++.+.++
T Consensus       108 i~la~~A~~~Gadavlv~~P~--y~~~~s-------~~~l~~~f~~IA~aa~-~lPiilYn~P~tg~~l~~e~~~~L  174 (344)
T 2hmc_A          108 VAHAVHAQKVGAKGLMVIPRV--LSRGSV-------IAAQKAHFKAILSAAP-EIPAVIYNSPYYGFATRADLFFAL  174 (344)
T ss_dssp             HHHHHHHHHHTCSEEEECCCC--SSSTTC-------HHHHHHHHHHHHHHST-TSCEEEEEBGGGTBCCCHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEECCCc--cCCCCC-------HHHHHHHHHHHHhhCC-CCcEEEEecCccCCCcCHHHHHHH
Confidence            899999999999999876432  111 11       0012456778888 66 68865 45    433577877777

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=93.46  E-value=1.6  Score=37.22  Aligned_cols=127  Identities=15%  Similarity=0.053  Sum_probs=76.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-ccee--EEEEec
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDI--TVKHRI  123 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pv--svKiR~  123 (311)
                      ++++-+=-.+.++..+.++.+ +.|+|.+|+.+  |..  ..  +|          .++++++|+.. +.|+  .+|+- 
T Consensus         8 ~lilalD~~~~~~~~~~~~~~-~~~vd~ie~g~--~~~--~~--~G----------~~~i~~lr~~~~~~~i~ld~~l~-   69 (218)
T 3jr2_A            8 MIQIALDQTNLTDAVAVASNV-ASYVDVIEVGT--ILA--FA--EG----------MKAVSTLRHNHPNHILVCDMKTT-   69 (218)
T ss_dssp             EEEEEECCSSHHHHHHHHHHH-GGGCSEEEECH--HHH--HH--HT----------THHHHHHHHHCTTSEEEEEEEEC-
T ss_pred             CeEEEeCCCCHHHHHHHHHHh-cCCceEEEeCc--HHH--Hh--cC----------HHHHHHHHHhCCCCcEEEEEeec-
Confidence            466666556677766666655 34799999974  221  11  12          25677777763 4454  55543 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCc-HHHHHHHHHhCCCCeEEE-ecCCCCHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILK-YNFVYNLKKDFPELEIII-NGGIKTKKEI  201 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~-~~~i~~i~~~~~~ipvi~-nGgI~s~~da  201 (311)
                        +.      ...+++.+.++|+|.+++|+-...              .. .+.++.+++.  ++++.. -=++.|++++
T Consensus        70 --d~------p~~~~~~~~~aGad~i~vh~~~~~--------------~~~~~~~~~~~~~--g~~~~~d~l~~~T~~~~  125 (218)
T 3jr2_A           70 --DG------GAILSRMAFEAGADWITVSAAAHI--------------ATIAACKKVADEL--NGEIQIEIYGNWTMQDA  125 (218)
T ss_dssp             --SC------HHHHHHHHHHHTCSEEEEETTSCH--------------HHHHHHHHHHHHH--TCEEEEECCSSCCHHHH
T ss_pred             --cc------HHHHHHHHHhcCCCEEEEecCCCH--------------HHHHHHHHHHHHh--CCccceeeeecCCHHHH
Confidence              22      124678899999999999975420              01 2344455554  455443 3334678888


Q ss_pred             HHHHhh-cCEEEEeh
Q psy2386         202 DLHLNY-IDGVMLGR  215 (311)
Q Consensus       202 ~~~l~~-adgVmigR  215 (311)
                      .++.+. +|.+.+..
T Consensus       126 ~~~~~~g~d~v~~~~  140 (218)
T 3jr2_A          126 KAWVDLGITQAIYHR  140 (218)
T ss_dssp             HHHHHTTCCEEEEEC
T ss_pred             HHHHHcCccceeeee
Confidence            888764 89776643

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=93.39  E-value=0.94  Score=41.88  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEe-----------ccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINL-----------NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~Idi-----------N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~  126 (311)
                      +.+....+.+++.|...+--           ..++|.-+     -||.=++|..++.++-    + .++||.+|.-..  
T Consensus        78 e~~~~L~~~~~~~Gi~~~st~fD~~svd~l~~~~v~~~K-----I~S~~~~N~pLL~~va----~-~gKPviLstGms--  145 (350)
T 3g8r_A           78 EQMQKLVAEMKANGFKAICTPFDEESVDLIEAHGIEIIK-----IASCSFTDWPLLERIA----R-SDKPVVASTAGA--  145 (350)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCCEEE-----ECSSSTTCHHHHHHHH----T-SCSCEEEECTTC--
T ss_pred             HHHHHHHHHHHHcCCcEEeccCCHHHHHHHHHcCCCEEE-----ECcccccCHHHHHHHH----h-hCCcEEEECCCC--
Confidence            44555555555555433221           23455554     3666789998877654    2 589999976542  


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN  192 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n  192 (311)
                         +.+++...++.+.+.|.+.+.+|+-+. |.    .   ....+|+..|..+++.+|++||..+
T Consensus       146 ---tl~Ei~~Ave~i~~~g~~viLlhC~s~-YP----t---~~~~~nL~aI~~Lk~~fp~lpVG~S  200 (350)
T 3g8r_A          146 ---RREDIDKVVSFMLHRGKDLTIMHCVAE-YP----T---PDDHLHLARIKTLRQQYAGVRIGYS  200 (350)
T ss_dssp             ---CHHHHHHHHHHHHTTTCCEEEEECCCC-SS----C---CGGGCCTTHHHHHHHHCTTSEEEEE
T ss_pred             ---CHHHHHHHHHHHHHcCCCEEEEecCCC-CC----C---CcccCCHHHHHHHHHHCCCCCEEcC
Confidence               244566777777888888666776532 21    1   1223688999999999877999766

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=93.39  E-value=0.22  Score=42.01  Aligned_cols=82  Identities=10%  Similarity=0.003  Sum_probs=58.9

Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      .|+.+=+|.. +    .++..++++.+.+.|++.|.+|-++.               .-.+.++++++.+|.-.+++.|-
T Consensus        10 ~~~i~~~~~~-~----~~~~~~~~~~~~~~G~~~iev~~~~~---------------~~~~~i~~ir~~~~~~~~ig~~~   69 (205)
T 1wa3_A           10 HKIVAVLRAN-S----VEEAKEKALAVFEGGVHLIEITFTVP---------------DADTVIKELSFLKEKGAIIGAGT   69 (205)
T ss_dssp             HCEEEEECCS-S----HHHHHHHHHHHHHTTCCEEEEETTST---------------THHHHHHHTHHHHHTTCEEEEES
T ss_pred             CCEEEEEecC-C----HHHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCCCcEEEecc
Confidence            4666666642 1    23578899999999999999997752               12356778887654223566778


Q ss_pred             CCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         195 IKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmigRa~  217 (311)
                      +.+++++.+..+. +|.| ++-++
T Consensus        70 v~~~~~~~~a~~~Gad~i-v~~~~   92 (205)
T 1wa3_A           70 VTSVEQCRKAVESGAEFI-VSPHL   92 (205)
T ss_dssp             CCSHHHHHHHHHHTCSEE-ECSSC
T ss_pred             cCCHHHHHHHHHcCCCEE-EcCCC
Confidence            8999999988876 9999 76543

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=93.36  E-value=2.4  Score=39.12  Aligned_cols=131  Identities=8%  Similarity=0.043  Sum_probs=87.3

Q ss_pred             eEEEecC---CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc-------ccCcc-------cCChHHHHHHHHHHh
Q psy2386          48 IAFQVGD---NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF-------FGAIL-------MTKPLLVSDCIKAMR  110 (311)
Q Consensus        48 ~~~Ql~g---~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~-------~G~~L-------l~~~~~~~~iv~~v~  110 (311)
                      +|.=++.   .+.+...+.++.+.++|+|.|-...-.|-..++...       .|..+       .-..+...++ ...+
T Consensus        22 iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L-~~~~  100 (349)
T 2wqp_A           22 IICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKL-KEYV  100 (349)
T ss_dssp             EEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHH-HHHH
T ss_pred             EEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHH-HHHH
Confidence            4444543   267778888888889999999998665533211111       13322       1234454444 4445


Q ss_pred             ccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         111 DSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       111 ~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      +..++++..-   -||.        +-+..+++.|++.+.|-+|.-               -|+.+++++.+.  +.|||
T Consensus       101 ~~~Gi~~~st---~~d~--------~svd~l~~~~v~~~KI~S~~~---------------~n~~LL~~va~~--gkPvi  152 (349)
T 2wqp_A          101 ESKGMIFIST---LFSR--------AAALRLQRMDIPAYKIGSGEC---------------NNYPLIKLVASF--GKPII  152 (349)
T ss_dssp             HHTTCEEEEE---ECSH--------HHHHHHHHHTCSCEEECGGGT---------------TCHHHHHHHHTT--CSCEE
T ss_pred             HHhCCeEEEe---eCCH--------HHHHHHHhcCCCEEEECcccc---------------cCHHHHHHHHhc--CCeEE
Confidence            5568887542   2332        334556889999999998873               489999999874  78999


Q ss_pred             EecCCCCHHHHHHHHhh
Q psy2386         191 INGGIKTKKEIDLHLNY  207 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~  207 (311)
                      ..=|..|.+++....+.
T Consensus       153 LstGmat~~Ei~~Ave~  169 (349)
T 2wqp_A          153 LSTGMNSIESIKKSVEI  169 (349)
T ss_dssp             EECTTCCHHHHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHH
Confidence            99999999998877754

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=93.35  E-value=1.7  Score=40.61  Aligned_cols=142  Identities=7%  Similarity=-0.021  Sum_probs=92.4

Q ss_pred             CC-eEEEecCC---CHHHHHHHHHHHHHcCCCEEEeccCCCcccccc--------CcccCcc-------cCChHHHHHHH
Q psy2386          46 HP-IAFQVGDN---EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQN--------GFFGAIL-------MTKPLLVSDCI  106 (311)
Q Consensus        46 ~p-~~~Ql~g~---~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~--------~~~G~~L-------l~~~~~~~~iv  106 (311)
                      .| +|.=++.|   +.+...+.++.+.++|+|.|-...-.|-..+..        +++|..+       .-..+...++.
T Consensus        28 ~~~IIAEiG~NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~  107 (385)
T 1vli_A           28 PVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLL  107 (385)
T ss_dssp             CCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHH
T ss_pred             CcEEEEeecCcccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHH
Confidence            44 55556444   566777777778889999999987766442221        1233322       12345554444


Q ss_pred             HHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCC
Q psy2386         107 KAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPE  186 (311)
Q Consensus       107 ~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~  186 (311)
                      +. ++..++++..   .-||.        +-+..+++.|++.+.|-+|.-               -|+.+++++.+.  +
T Consensus       108 ~~-~~~~Gi~~~s---tpfD~--------~svd~l~~~~vd~~KIgS~~~---------------~N~pLL~~va~~--g  158 (385)
T 1vli_A          108 DY-CREKQVIFLS---TVCDE--------GSADLLQSTSPSAFKIASYEI---------------NHLPLLKYVARL--N  158 (385)
T ss_dssp             HH-HHHTTCEEEC---BCCSH--------HHHHHHHTTCCSCEEECGGGT---------------TCHHHHHHHHTT--C
T ss_pred             HH-HHHcCCcEEE---ccCCH--------HHHHHHHhcCCCEEEECcccc---------------cCHHHHHHHHhc--C
Confidence            44 4446888743   22332        335566889999999998863               489999999874  7


Q ss_pred             CeEEEecCCCCHHHHHHHHhh-----cCEEEEehh
Q psy2386         187 LEIIINGGIKTKKEIDLHLNY-----IDGVMLGRE  216 (311)
Q Consensus       187 ipvi~nGgI~s~~da~~~l~~-----adgVmigRa  216 (311)
                      .|||.+=|..|.+++....+.     ++-|++--+
T Consensus       159 KPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc  193 (385)
T 1vli_A          159 RPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHC  193 (385)
T ss_dssp             SCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEE
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEec
Confidence            899999999999998877753     544566333

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=93.25  E-value=0.61  Score=42.16  Aligned_cols=139  Identities=11%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             CCC-HHHHHHHHHHHHHcCCCEEEecc----------CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          54 DNE-PKKLAKSAKIIQKWGYDEINLNC----------GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        54 g~~-~~~~~~aa~~~~~~g~d~IdiN~----------gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      |-. .+.+....+.+++.|...+-==+          -++.-     ..||..+++.+++.++    . .+++||.+|.-
T Consensus        94 Glg~~~GL~~L~~~~~e~GLpv~Tev~D~~~v~~l~~~vd~l-----kIgA~~~~n~~LLr~v----a-~~gkPVilK~G  163 (298)
T 3fs2_A           94 GIGLEKALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPVVDVL-----QIPAFLCRQTDLLIAA----A-RTGRVVNVKKG  163 (298)
T ss_dssp             -CCHHHHHHHHHHHHHHHCCCEEEECCSHHHHHHHTTTCSEE-----EECGGGTTCHHHHHHH----H-HTTSEEEEECC
T ss_pred             CcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhCCEE-----EECccccCCHHHHHHH----H-ccCCcEEEeCC
Confidence            444 35566666666777765543211          13333     3688899999976653    3 36899999966


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----------
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----------  192 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----------  192 (311)
                      ..-+.    +++...++.+.+.|.+.|++.-|...+ +|.      ...+|+..+..+++ + ++||+..          
T Consensus       164 ms~t~----~ei~~ave~i~~~Gn~~iiL~erg~~y-~~~------~~~vdl~~i~~lk~-~-~~PV~~D~sHsvq~p~~  230 (298)
T 3fs2_A          164 QFLAP----WDMKNVLAKITESGNPNVLATERGVSF-GYN------TLVSDMRALPIMAG-L-GAPVIFDATHSVQQPGG  230 (298)
T ss_dssp             TTCCG----GGHHHHHHHHHTTTCCCEEEEECCEEC-SSS------CEECCTTHHHHHHT-T-TSCEEEEHHHHTCCCC-
T ss_pred             CCCCH----HHHHHHHHHHHHcCCCeEEEEECCCCC-CCC------CCccCHHHHHHHHH-c-CCcEEEcCCCccccCCc
Confidence            53222    245677888899998877765444323 221      11258888988988 7 8999883          


Q ss_pred             -----cCCCC--HHHHHHHHhh-cCEEEEeh
Q psy2386         193 -----GGIKT--KKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       193 -----GgI~s--~~da~~~l~~-adgVmigR  215 (311)
                           ||-+.  +.-+...... |||++|=+
T Consensus       231 ~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~  261 (298)
T 3fs2_A          231 QGGSTGGQREFVETLARAAVAVGVAGFFIET  261 (298)
T ss_dssp             -------CGGGHHHHHHHHHHHCCSEEEEEE
T ss_pred             ccCCCCCchhhHHHHHHHHHHcCCCEEEEEe
Confidence                 23222  2223344444 99999863

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.21  E-value=1.6  Score=38.70  Aligned_cols=126  Identities=15%  Similarity=0.202  Sum_probs=84.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      |++...+.|+.+.++|++.|-...--|-+...  ++-+ +.  .+- .++++.+++..++|+..-+   ++..       
T Consensus        35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~--~~~g-~~--~eg-l~~l~~~~~~~Gl~~~te~---~d~~-------   98 (262)
T 1zco_A           35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTSPY--SFQG-YG--EKA-LRWMREAADEYGLVTVTEV---MDTR-------   98 (262)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTT--SCCC-CT--HHH-HHHHHHHHHHHTCEEEEEC---CCGG-------
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEecccCCCcc--cccC-cc--HHH-HHHHHHHHHHcCCcEEEee---CCHH-------
Confidence            68888888999999999998776555533210  1111 11  333 3555666666799987632   2321       


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh-----c-
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY-----I-  208 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~-----a-  208 (311)
                       -++.+.+. ++.+.|-+|+.               -++++++++.+ . +.||+..-|.. |++++....+.     . 
T Consensus        99 -~~~~l~~~-vd~~kIga~~~---------------~n~~ll~~~a~-~-~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~  159 (262)
T 1zco_A           99 -HVELVAKY-SDILQIGARNS---------------QNFELLKEVGK-V-ENPVLLKRGMGNTIQELLYSAEYIMAQGNE  159 (262)
T ss_dssp             -GHHHHHHH-CSEEEECGGGT---------------TCHHHHHHHTT-S-SSCEEEECCTTCCHHHHHHHHHHHHTTTCC
T ss_pred             -hHHHHHhh-CCEEEECcccc---------------cCHHHHHHHHh-c-CCcEEEecCCCCCHHHHHHHHHHHHHCCCC
Confidence             13444667 99999999974               36788888887 4 79999888887 99998887753     3 


Q ss_pred             CEEEEehh
Q psy2386         209 DGVMLGRE  216 (311)
Q Consensus       209 dgVmigRa  216 (311)
                      +.+.+=||
T Consensus       160 ~i~L~~RG  167 (262)
T 1zco_A          160 NVILCERG  167 (262)
T ss_dssp             CEEEEECC
T ss_pred             eEEEEECC
Confidence            55555666

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=93.13  E-value=0.46  Score=41.53  Aligned_cols=96  Identities=9%  Similarity=0.047  Sum_probs=65.8

Q ss_pred             CeEEEecC-CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          47 PIAFQVGD-NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g-~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      .+++-|.| .+.+++.+.++.+.+.|+|.||+=.=+         +..   .+++.+.+.++.+++.. ++|+.+=+|.-
T Consensus         5 ~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRvD~---------l~~---~~~~~v~~~~~~lr~~~~~~PiI~T~R~~   72 (238)
T 1sfl_A            5 EVVATITPQLSIEETLIQKINHRIDAIDVLELRIDQ---------FEN---VTVDQVAEMITKLKVMQDSFKLLVTYRTK   72 (238)
T ss_dssp             EEEEEECCCC---CHHHHHHHHTTTTCSEEEEECTT---------STT---CCHHHHHHHHHHHC---CCSEEEEECCBG
T ss_pred             eEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEecc---------ccc---CCHHHHHHHHHHHHHhccCCCEEEEeecc
Confidence            37889999 999998888888888899999996432         111   14678889999999887 78999989975


Q ss_pred             CCCC---CcHHHHHHHHHHHHHc-CCCEEEEecC
Q psy2386         125 IDDI---NSYDFVRDFVGTVSSA-GCRTFIVHAR  154 (311)
Q Consensus       125 ~~~~---~~~~~~~e~~~~l~~~-G~~~itvh~R  154 (311)
                      |..+   .+.+...++.+.+.+. ++++|.|.-.
T Consensus        73 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~  106 (238)
T 1sfl_A           73 LQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQ  106 (238)
T ss_dssp             GGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECC
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcc
Confidence            4322   1223456777777777 6999998643

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=93.09  E-value=0.89  Score=39.29  Aligned_cols=98  Identities=17%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             HHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         105 CIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       105 iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      +++.+++.   |+..=+|.. +.    ++..++++.+.+.|++.|.+.-++.               ...+.++++++.+
T Consensus        10 ~~~~l~~~---~ii~vir~~-~~----~~~~~~~~al~~gGv~~iel~~k~~---------------~~~~~i~~l~~~~   66 (224)
T 1vhc_A           10 IIEKLREL---KIVPVIALD-NA----DDILPLADTLAKNGLSVAEITFRSE---------------AAADAIRLLRANR   66 (224)
T ss_dssp             HHHHHHHH---CEEEEECCS-SG----GGHHHHHHHHHHTTCCEEEEETTST---------------THHHHHHHHHHHC
T ss_pred             HHHHHHHC---CeEEEEeCC-CH----HHHHHHHHHHHHcCCCEEEEeccCc---------------hHHHHHHHHHHhC
Confidence            44444443   566666752 21    2468999999999999999975542               2357888899988


Q ss_pred             CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         185 PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       185 ~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      |++ +++.|-+.+.+++...++. ||+|.++-   .++.+....++
T Consensus        67 ~~l-~vgaGtvl~~d~~~~A~~aGAd~v~~p~---~d~~v~~~ar~  108 (224)
T 1vhc_A           67 PDF-LIAAGTVLTAEQVVLAKSSGADFVVTPG---LNPKIVKLCQD  108 (224)
T ss_dssp             TTC-EEEEESCCSHHHHHHHHHHTCSEEECSS---CCHHHHHHHHH
T ss_pred             cCc-EEeeCcEeeHHHHHHHHHCCCCEEEECC---CCHHHHHHHHH
Confidence            654 4566678899999999987 99998883   45555554443

>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*

Probab=93.09  E-value=0.13  Score=48.84  Aligned_cols=106  Identities=10%  Similarity=0.071  Sum_probs=69.7

Q ss_pred             HHHHHHHHhcccc--ceeEEEEec------cCCCCCcHHHHHHHHHHHHHcCCCE-EEEecCccccccCCCCcCCCCCcC
Q psy2386         102 VSDCIKAMRDSVE--IDITVKHRI------GIDDINSYDFVRDFVGTVSSAGCRT-FIVHARNAFLKKLNPKQNRKIPIL  172 (311)
Q Consensus       102 ~~~iv~~v~~~~~--~pvsvKiR~------g~~~~~~~~~~~e~~~~l~~~G~~~-itvh~Rt~~~~G~~g~~~~~~~~~  172 (311)
                      ..+.++++|+.++  +.+.+-..-      +|+    .++..++++.|++.|+.. +-+---..          ...++.
T Consensus       218 d~~~v~aiR~~~G~~~~L~vDan~~~~~~~~~~----~~~A~~~~~~L~~~~~~~~l~iEqP~~----------~~~~~~  283 (413)
T 1kko_A          218 LSDRILSLRSSPRYHPTLHIDVYGTIGLIFDMD----PVRCAEYIASLEKEAQGLPLYIEGPVD----------AGNKPD  283 (413)
T ss_dssp             HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTC----HHHHHHHHHHTGGGGTTSCEEEECCCC----------CSSHHH
T ss_pred             HHHHHHHHHHhhCCCCeEEEECCCccccccCCC----HHHHHHHHHHHHhccCCcceEEECCcC----------CCCCcc
Confidence            4488899988874  444444333      343    345778999999876541 12210000          000134


Q ss_pred             cHHHHHHHHHh-----CCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         173 KYNFVYNLKKD-----FPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       173 ~~~~i~~i~~~-----~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      ||+..+++++.     . .+||.+.=-+.+++++.++++.  +|.|++=-.-.+...
T Consensus       284 d~~~~~~l~~~l~~~g~-~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit  339 (413)
T 1kko_A          284 QIRMLTAITKELTRLGS-GVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIH  339 (413)
T ss_dssp             HHHHHHHHHHHHHHHTC-CCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTH
T ss_pred             cHHHHHHHHHhcccCCC-CCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence            88888999887     7 6999998889999999999975  999998655544443

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*

Probab=93.04  E-value=0.38  Score=45.93  Aligned_cols=77  Identities=5%  Similarity=0.047  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccC---ChHHHHHHHHHHhc---c--ccceeEEEEeccCC
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMT---KPLLVSDCIKAMRD---S--VEIDITVKHRIGID  126 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~---~~~~~~~iv~~v~~---~--~~~pvsvKiR~g~~  126 (311)
                      .+++...+-|+...+.|+|.||||+-.--       -|+....   ..+.+..+++++++   .  +++|+||-..-   
T Consensus       209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTr-------PGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~~---  278 (442)
T 3mcm_A          209 FDDNQRKLNLDELIQSGAEIIDIGAESTK-------PDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTRK---  278 (442)
T ss_dssp             SCCCHHHHHHHHHHHHTCSEEEEECCCCC-------C----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECCC---
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCC-------CCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCCC---
Confidence            44555566666666779999999943221       2333332   33455556888876   3  47899986442   


Q ss_pred             CCCcHHHHHHHHHHHHH--cCCCE-E
Q psy2386         127 DINSYDFVRDFVGTVSS--AGCRT-F  149 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~--~G~~~-i  149 (311)
                              .+.++...+  +|++. |
T Consensus       279 --------~~VaeaAL~~~aGa~i~I  296 (442)
T 3mcm_A          279 --------LEVMQKILAKHHDIIWMI  296 (442)
T ss_dssp             --------HHHHHHHHHHHGGGCCEE
T ss_pred             --------HHHHHHHHhhCCCCCEEE
Confidence                    366777777  89987 6

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=92.94  E-value=1.6  Score=39.20  Aligned_cols=139  Identities=9%  Similarity=-0.083  Sum_probs=76.1

Q ss_pred             HHHHHHHcCCCEEEeccCCCcccc-------ccC------cccCcccCC--hHHHHHHHHHHhccc--cceeEEEEeccC
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRV-------QNG------FFGAILMTK--PLLVSDCIKAMRDSV--EIDITVKHRIGI  125 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v-------~~~------~~G~~Ll~~--~~~~~~iv~~v~~~~--~~pvsvKiR~g~  125 (311)
                      ..+.+.+.|+..|.+-+-.+.+..       ..-      .+|   +++  .+.+.+.+...++..  +.|+.+-+. | 
T Consensus        28 ~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g---~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~-g-  102 (311)
T 1jub_A           28 DLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMG---LPNLGFDYYLDYVLKNQKENAQEGPIFFSIA-G-  102 (311)
T ss_dssp             HHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCC---CCBSCHHHHHHHHHHHHHHTCSSSCCEEEEC-C-
T ss_pred             HHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCC---CCCccHHHHHHHHHHHHHhcCCCCCEEEEcC-C-
Confidence            335567889888887665544321       000      011   122  233333344343334  688887665 2 


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCC-EEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE--ecCCCCHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCR-TFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEID  202 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~-~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~--nGgI~s~~da~  202 (311)
                         ...+++.+.++.++++|+| +|.+|--.....|.+  .-...+..-++.++++++.+ ++||+.  +.++ +.+++.
T Consensus       103 ---~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~--~~g~~~e~~~~iv~~vr~~~-~~Pv~vKi~~~~-~~~~~~  175 (311)
T 1jub_A          103 ---MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEP--QLAYDFEATEKLLKEVFTFF-TKPLGVKLPPYF-DLVHFD  175 (311)
T ss_dssp             ---SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCC--CGGGCHHHHHHHHHHHTTTC-CSCEEEEECCCC-SHHHHH
T ss_pred             ---CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcc--cccCCHHHHHHHHHHHHHhc-CCCEEEEECCCC-CHHHHH
Confidence               2234678999999999999 999984321111100  00000011256788888776 789874  5555 666653


Q ss_pred             H---HHhh--cCEEEE
Q psy2386         203 L---HLNY--IDGVML  213 (311)
Q Consensus       203 ~---~l~~--adgVmi  213 (311)
                      +   .++.  +|+|.+
T Consensus       176 ~~a~~~~~~G~d~i~v  191 (311)
T 1jub_A          176 IMAEILNQFPLTYVNS  191 (311)
T ss_dssp             HHHHHHTTSCCCEEEE
T ss_pred             HHHHHHHHcCCcEEEe
Confidence            3   3332  999876

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=92.89  E-value=1.2  Score=41.06  Aligned_cols=129  Identities=10%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      +-|+.|--=+ .++..+.+.+++-+..|.++|++.|-+.--+.               .+.+.+.++++.. ++|++  +
T Consensus        29 ~~Pi~VQSMt-nt~T~D~~atv~Qi~~l~~aG~diVRvavp~~---------------~~a~al~~I~~~~-~vPlv--a   89 (366)
T 3noy_A           29 DAPIVVQSMT-STKTHDVEATLNQIKRLYEAGCEIVRVAVPHK---------------EDVEALEEIVKKS-PMPVI--A   89 (366)
T ss_dssp             TSCCEEEEEC-CSCTTCHHHHHHHHHHHHHTTCCEEEEECCSH---------------HHHHHHHHHHHHC-SSCEE--E
T ss_pred             CCcEEEEEec-CCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCh---------------HHHHHHHHHHhcC-CCCEE--E
Confidence            4566664333 23333455778889999999999997753321               2457788999887 68987  5


Q ss_pred             CC-CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCC-----------------CCCCCHHHHHHHHHHHH
Q psy2386         194 GI-KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQ-----------------YKIPTRIDIINRMILYI  254 (311)
Q Consensus       194 gI-~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~  254 (311)
                      || +++.-+.+.++. +|.+=|-=|-+++++-|.++.+.....+.+                 +..++++..++..++|+
T Consensus        90 DiHf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~~~ll~~yg~~~~eamVeSAl~~~  169 (366)
T 3noy_A           90 DIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLEKDLLEKYGYPSAEALAESALRWS  169 (366)
T ss_dssp             ECCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCCHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCCHHHHHhcCCCCHHHHHHHHHHHH
Confidence            88 899999999987 999999999999888777764332211110                 11367777888888888


Q ss_pred             HHHHhcC
Q psy2386         255 RQQLNNN  261 (311)
Q Consensus       255 ~~~~~~g  261 (311)
                      +...+.|
T Consensus       170 ~~~e~~g  176 (366)
T 3noy_A          170 EKFEKWG  176 (366)
T ss_dssp             HHHHHTT
T ss_pred             HHHHhCC
Confidence            8766543

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=92.86  E-value=0.37  Score=43.28  Aligned_cols=60  Identities=12%  Similarity=0.115  Sum_probs=38.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCc---ccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAI---LMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~---Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .+++...+.|+...+.|+|.||||.-..-       -|+.   .....+.+..+++++++. ++||||-..
T Consensus        26 ~~~~~a~~~a~~~v~~GAdiIDIGgestr-------pga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~   88 (280)
T 1eye_A           26 LDLDDAVKHGLAMAAAGAGIVDVGGESSR-------PGATRVDPAVETSRVIPVVKELAAQ-GITVSIDTM   88 (280)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECC---------------------HHHHHHHHHHHHHT-TCCEEEECS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCC-------CCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCC
Confidence            36788888888888889999999942211       1222   234456677777777765 899999753

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=92.85  E-value=0.68  Score=41.78  Aligned_cols=145  Identities=8%  Similarity=-0.014  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCC-CccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC----CCC
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGC-PSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID----DIN  129 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gC-P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~----~~~  129 (311)
                      .+.+.+.+|    .++|++.|.+-.++ +..  .+...+-...++.+.+.++++.+++. ++.|.+-+..-+.    ...
T Consensus        84 ~~~~~i~~a----~~aG~~~v~i~~~~s~~~--~~~~~~~s~ee~l~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~  156 (302)
T 2ftp_A           84 PNLKGFEAA----LESGVKEVAVFAAASEAF--SQRNINCSIKDSLERFVPVLEAARQH-QVRVRGYISCVLGCPYDGDV  156 (302)
T ss_dssp             CSHHHHHHH----HHTTCCEEEEEEESCHHH--HHHHHSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECTTCBTTTBCC
T ss_pred             CCHHHHHHH----HhCCcCEEEEEEecCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCC
Confidence            566655444    45799999885444 221  11112333445566777777777664 6666544433221    112


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCCC-HHHHHHHHh
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIKT-KKEIDLHLN  206 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~s-~~da~~~l~  206 (311)
                      +.+.+.++++.+.+.|++.|.+-.-.    |+.      .|....+.++++++.+|++|+..-|  |--. .+.+...++
T Consensus       157 ~~~~~~~~~~~~~~~G~d~i~l~DT~----G~~------~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~  226 (302)
T 2ftp_A          157 DPRQVAWVARELQQMGCYEVSLGDTI----GVG------TAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLL  226 (302)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEESS----SCC------CHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCC----CCc------CHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHH
Confidence            34678899999999999999886222    221      1224578899999988678887766  4332 233444454


Q ss_pred             h-cCEEEEehh
Q psy2386         207 Y-IDGVMLGRE  216 (311)
Q Consensus       207 ~-adgVmigRa  216 (311)
                      . ++.|-..=+
T Consensus       227 aGa~~vd~tv~  237 (302)
T 2ftp_A          227 EGIAVFDSSVA  237 (302)
T ss_dssp             TTCCEEEEBGG
T ss_pred             hCCCEEEeccc
Confidence            4 777666543

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=92.81  E-value=0.66  Score=42.04  Aligned_cols=156  Identities=11%  Similarity=0.063  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGT  140 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~  140 (311)
                      .|++++++|||.|=+- .+.-.  +. -|+-...+-..+.+..-++.|.+.+ ++||++-+-.|+-+   .+...+.++.
T Consensus        30 sA~l~e~aGf~ai~vsG~~~a~--~~-~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~---~~~v~~tv~~  103 (302)
T 3fa4_A           30 SARVALSAGFDALYMTGAGTAA--SV-HGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGG---PIMVARTTEQ  103 (302)
T ss_dssp             HHHHHHTTTCSCEEECHHHHHH--HH-HSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSS---HHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEeCcHHHHH--HH-cCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCC---HHHHHHHHHH
Confidence            5678889999998773 11100  00 0111122234455566667777764 89999999999743   2356788999


Q ss_pred             HHHcCCCEEEEecCccc-cccCC-CCcCCCCCcCcH-HHHHHHHHh-------CCCCeEEEecCCC---CHHHHHHHH--
Q psy2386         141 VSSAGCRTFIVHARNAF-LKKLN-PKQNRKIPILKY-NFVYNLKKD-------FPELEIIINGGIK---TKKEIDLHL--  205 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~~-~~G~~-g~~~~~~~~~~~-~~i~~i~~~-------~~~ipvi~nGgI~---s~~da~~~l--  205 (311)
                      ++++|+++|.+-+.+.. ..|.. |+     ...+. +.+.+|+..       -+++-|++==|..   ..+++.+-.  
T Consensus       104 l~~aGaagv~iEDq~~~Krcgh~~gk-----~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~a  178 (302)
T 3fa4_A          104 YSRSGVAAFHIEDQVQTKRCGHLAGK-----ILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRA  178 (302)
T ss_dssp             HHHTTCCEEEECSBCCC-------CC-----CBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHH
T ss_pred             HHHcCCcEEEECCCCCCcccCCCCCC-----eecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHH
Confidence            99999999999876421 11211 11     11233 344444322       1344455544543   234443332  


Q ss_pred             --hh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         206 --NY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       206 --~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                        +. ||+|++= | +.++.-++++.+.+
T Consensus       179 y~eAGAD~ifi~-g-~~~~~ei~~~~~~~  205 (302)
T 3fa4_A          179 ARDAGADVGFLE-G-ITSREMARQVIQDL  205 (302)
T ss_dssp             HHTTTCSEEEET-T-CCCHHHHHHHHHHT
T ss_pred             HHHcCCCEEeec-C-CCCHHHHHHHHHHh
Confidence              22 9999983 1 35555555555443

>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A

Probab=92.80  E-value=0.066  Score=50.76  Aligned_cols=104  Identities=11%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             HHHHHHHHhcccc--ceeEEEEecc------CCCCCcHHHHHHHHHHHHHc--CCC-EEEEecCccccccCCCCcCCCCC
Q psy2386         102 VSDCIKAMRDSVE--IDITVKHRIG------IDDINSYDFVRDFVGTVSSA--GCR-TFIVHARNAFLKKLNPKQNRKIP  170 (311)
Q Consensus       102 ~~~iv~~v~~~~~--~pvsvKiR~g------~~~~~~~~~~~e~~~~l~~~--G~~-~itvh~Rt~~~~G~~g~~~~~~~  170 (311)
                      -.+.++++|+.++  +.+.+-..-+      |+    .++..++++.+++.  ++. +|- .+-..           ..+
T Consensus       218 d~~~v~avR~~~G~~~~l~vDaN~~~~~~~~~~----~~~a~~~~~~L~~~~~~i~~~iE-qP~~~-----------~~~  281 (413)
T 1kcz_A          218 LRDRIIKLRVREDYAPIFHIDVYGTIGAAFDVD----IKAMADYIQTLAEAAKPFHLRIE-GPMDV-----------EDR  281 (413)
T ss_dssp             HHHHHHHHCSSTTCCCEEEEECTTHHHHHTTTC----HHHHHHHHHHHHHHHTTSCEEEE-CSBCC-----------SSH
T ss_pred             HHHHHHHHHHhcCCCceEEEecCCCcccccCCC----HHHHHHHHHHHHhhcCCcceEEe-cCCCC-----------CCC
Confidence            4577889988764  4444444434      43    33578899999987  555 441 10000           001


Q ss_pred             cCcHHHHHHHHHh-----CCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         171 ILKYNFVYNLKKD-----FPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       171 ~~~~~~i~~i~~~-----~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      +-||+..+++++.     . .+||.+-=-+.+++++.++++.  +|.|++=-.-.+...
T Consensus       282 ~~d~~~~~~l~~~l~~~g~-~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit  339 (413)
T 1kcz_A          282 QKQMEAMRDLRAELDGRGV-DAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVN  339 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHTC-CEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTH
T ss_pred             cccHHHHHHHHHhhhcCCC-CCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHH
Confidence            2378888999987     6 6999988889999999999975  999998655555443

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=92.79  E-value=0.67  Score=40.99  Aligned_cols=84  Identities=14%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      .|++++++|||.|=+-- +.-.    .-|+-....-..+.+...+++|.+.++.||++-+-.|+...    . .+.++.+
T Consensus        32 sA~~~~~aG~dai~vg~~s~a~----~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~----~-~~~~~~l  102 (255)
T 2qiw_A           32 SAGLVEEAGFSGLTIGSHPVAD----ATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLS----P-ADLIAQI  102 (255)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHH----HTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCC----H-HHHHHHH
T ss_pred             HHHHHHHcCCCEEEEChHHHHH----hCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcH----H-HHHHHHH
Confidence            46778889999987751 2211    12344444556777888888888888999999999995432    1 6778889


Q ss_pred             HHcCCCEEEEecCc
Q psy2386         142 SSAGCRTFIVHARN  155 (311)
Q Consensus       142 ~~~G~~~itvh~Rt  155 (311)
                      .++|+++|.+-+..
T Consensus       103 ~~aGa~gv~iEd~~  116 (255)
T 2qiw_A          103 LEAGAVGINVEDVV  116 (255)
T ss_dssp             HHTTCCEEEECSEE
T ss_pred             HHcCCcEEEECCCC
Confidence            99999999997654

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=92.73  E-value=0.46  Score=44.06  Aligned_cols=42  Identities=26%  Similarity=0.436  Sum_probs=36.7

Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +...|+.++.+++.. ++||+.-| +.++++++.+.+. +|+|.+
T Consensus       202 ~~~~w~~i~~lr~~~-~~PvivK~-v~~~e~A~~a~~~GaD~I~v  244 (352)
T 3sgz_A          202 ASFCWNDLSLLQSIT-RLPIILKG-ILTKEDAELAMKHNVQGIVV  244 (352)
T ss_dssp             TTCCHHHHHHHHHHC-CSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             CCCCHHHHHHHHHhc-CCCEEEEe-cCcHHHHHHHHHcCCCEEEE
Confidence            557899999999998 79997764 6899999999887 999998

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=92.65  E-value=0.39  Score=40.68  Aligned_cols=81  Identities=14%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCe-EEEe
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELE-IIIN  192 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ip-vi~n  192 (311)
                      ..|+..-++. .+    .+++.+.++.+.+.|++.|.+.-.+.               ...+.++++++.+ ++| +++.
T Consensus         6 ~~~i~~~i~~-~d----~~~~~~~~~~~~~~G~~~i~l~~~~~---------------~~~~~i~~i~~~~-~~~l~vg~   64 (212)
T 2v82_A            6 KLPLIAILRG-IT----PDEALAHVGAVIDAGFDAVEIPLNSP---------------QWEQSIPAIVDAY-GDKALIGA   64 (212)
T ss_dssp             SSCEEEECTT-CC----HHHHHHHHHHHHHHTCCEEEEETTST---------------THHHHHHHHHHHH-TTTSEEEE
T ss_pred             CCCEEEEEeC-CC----HHHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHhC-CCCeEEEe
Confidence            3455554442 11    33578899999999999998854431               2356788888776 455 4567


Q ss_pred             cCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         193 GGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       193 GgI~s~~da~~~l~~-adgVmigR  215 (311)
                      |.+.+.+++..+++. ||+|.+|.
T Consensus        65 g~~~~~~~i~~a~~~Gad~V~~~~   88 (212)
T 2v82_A           65 GTVLKPEQVDALARMGCQLIVTPN   88 (212)
T ss_dssp             ECCCSHHHHHHHHHTTCCEEECSS
T ss_pred             ccccCHHHHHHHHHcCCCEEEeCC
Confidence            899999999988876 99998764

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=92.63  E-value=0.26  Score=45.03  Aligned_cols=72  Identities=13%  Similarity=0.031  Sum_probs=39.3

Q ss_pred             CCeEEEecCCCH------------HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386          46 HPIAFQVGDNEP------------KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV  113 (311)
Q Consensus        46 ~p~~~Ql~g~~~------------~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~  113 (311)
                      +|.|.=|.--+|            +...+-|+...+.|+|.||||+-.--+     |..-...+..+.+..+++++++.+
T Consensus        41 ~~~vMGIlNvTPDSFsdgg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrP-----G~~v~~~eEl~Rv~pvI~~l~~~~  115 (318)
T 2vp8_A           41 RALIMAIVNRTPDSFYDKGATFSDAAARDAVHRAVADGADVIDVGGVKAGP-----GERVDVDTEITRLVPFIEWLRGAY  115 (318)
T ss_dssp             SCEEEEEEC--------------CHHHHHHHHHHHHTTCSEEEEC---------------CHHHHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEEeCCCCcccCCCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCC-----CCCCCHHHHHHHHHHHHHHHHhhC
Confidence            566655554444            444455556667899999999533111     000111233445666688888876


Q ss_pred             -cceeEEEEe
Q psy2386         114 -EIDITVKHR  122 (311)
Q Consensus       114 -~~pvsvKiR  122 (311)
                       ++|+||-..
T Consensus       116 ~~vpISIDT~  125 (318)
T 2vp8_A          116 PDQLISVDTW  125 (318)
T ss_dssp             TTCEEEEECS
T ss_pred             CCCeEEEeCC
Confidence             899999643

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=92.62  E-value=0.38  Score=43.48  Aligned_cols=59  Identities=14%  Similarity=0.166  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEe
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +++...+-|+...+.|+|.||||+-..-|       |+...   ...+.+..+++++++. ++|++|-..
T Consensus        44 ~~~~a~~~a~~~v~~GAdiIDIGgeSTrP-------ga~~v~~~eE~~Rv~pvi~~l~~~-~vpiSIDT~  105 (294)
T 2y5s_A           44 ARDDALRRAERMIAEGADLLDIGGESTRP-------GAPPVPLDEELARVIPLVEALRPL-NVPLSIDTY  105 (294)
T ss_dssp             CTTHHHHHHHHHHHTTCSEEEEESSCCST-------TCCCCCHHHHHHHHHHHHHHHGGG-CSCEEEECC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHhhC-CCeEEEECC
Confidence            44555666666777899999999633211       22222   3345566667777665 899999753

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=92.62  E-value=2.5  Score=38.31  Aligned_cols=107  Identities=10%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +..|-+...++++...+. ++.|-.-+- +| ..++       ..+-+..+..+.+++.|+|.|.+.=.|. -+.|.++ 
T Consensus       110 ~eeNi~~Tk~vv~~ah~~-gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~-HG~Yk~~-  186 (307)
T 3n9r_A          110 FEENLELTSKVVKMAHNA-GVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTS-HGAFKFK-  186 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCC-SSSBCCS-
T ss_pred             HHHHHHHHHHHHHHHHHc-CCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCc-ccccCCC-
Confidence            345667777888777653 555444332 11 1110       0011233444555779999998754432 1112111 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                        ..+..|++.+++|++.. ++|++.-|+=.-|++..+.++.
T Consensus       187 --~~p~Ld~~~L~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~  225 (307)
T 3n9r_A          187 --GEPKLDFERLQEVKRLT-NIPLVLHGASAIPDNVRKSYLD  225 (307)
T ss_dssp             --SSCCCCHHHHHHHHHHH-CSCEEESSCCCCCHHHHHHHHH
T ss_pred             --CCCccCHHHHHHHHhcC-CCCeEEeCCCCcchHHHHHHHH
Confidence              12458999999997765 7999999988777777777654

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=92.58  E-value=0.33  Score=43.88  Aligned_cols=85  Identities=9%  Similarity=0.103  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-C-CCeEEEecCCCCHHHHHHHHhh-
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-P-ELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~-~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ . ++|||+.=|=.|.+++.++.+. 
T Consensus        27 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~-------Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a   99 (301)
T 3m5v_A           27 EQSYARLIKRQIENGIDAVVPVGTTGESATLTHE-------EHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFA   99 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHH
Confidence            4467888999999999999999888633332211       1123455555543 2 5899876555566666665532 


Q ss_pred             ----cCEEEEehhhhhCCc
Q psy2386         208 ----IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ----adgVmigRa~l~~P~  222 (311)
                          +|+||+-...|..|.
T Consensus       100 ~~~Gadavlv~~P~y~~~s  118 (301)
T 3m5v_A          100 KEHGADGILSVAPYYNKPT  118 (301)
T ss_dssp             HHTTCSEEEEECCCSSCCC
T ss_pred             HHcCCCEEEEcCCCCCCCC
Confidence                999999999888774

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=92.56  E-value=0.4  Score=43.05  Aligned_cols=85  Identities=12%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~   92 (289)
T 2yxg_A           20 FDGLEENINFLIENGVSGIVAVGTTGESPTLSHE-------EHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAE   92 (289)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHH
Confidence            3457788999999999999999888633333211       1224455555443 2599875544445555555543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  +|+||+-...|..|.
T Consensus        93 ~~Gadavlv~~P~y~~~s  110 (289)
T 2yxg_A           93 DVGADAVLSITPYYNKPT  110 (289)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999999887774

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=92.54  E-value=0.38  Score=43.30  Aligned_cols=85  Identities=9%  Similarity=0.128  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~   93 (291)
T 3a5f_A           21 FDKLSELIEWHIKSKTDAIIVCGTTGEATTMTET-------ERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAE   93 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHH
Confidence            4567788999999999999999988633333211       1224455555443 2589876544455566655543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus        94 ~~Gadavlv~~P~y~~~s  111 (291)
T 3a5f_A           94 SIGVDGLLVITPYYNKTT  111 (291)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEEcCCCCCCCC
Confidence            2  999999999887774

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=92.50  E-value=0.45  Score=43.09  Aligned_cols=85  Identities=11%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        36 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~  108 (304)
T 3cpr_A           36 IAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAA-------EKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAA  108 (304)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999988632222211       1223455555443 2599876544455566655543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       109 ~~Gadavlv~~P~y~~~~  126 (304)
T 3cpr_A          109 SAGADGLLVVTPYYSKPS  126 (304)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999999887774

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=92.49  E-value=0.48  Score=42.96  Aligned_cols=85  Identities=11%  Similarity=0.139  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.-|=.|.+++.++.+.  
T Consensus        35 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~  107 (304)
T 3l21_A           35 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDG-------EKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACA  107 (304)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHH-------HHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHH
Confidence            4567888999999999999999888633333211       1223455555543 35899876555566666665532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+-...|..|.
T Consensus       108 ~~Gadavlv~~P~y~~~s  125 (304)
T 3l21_A          108 AEGAHGLLVVTPYYSKPP  125 (304)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             HcCCCEEEECCCCCCCCC
Confidence               999999998888774

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=92.46  E-value=0.48  Score=42.91  Aligned_cols=85  Identities=12%  Similarity=0.001  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        31 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~e-------Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~  103 (303)
T 2wkj_A           31 KASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLS-------EREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAK  103 (303)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECeeccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999888633333211       1223455555443 2599986544445555555443   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       104 ~~Gadavlv~~P~y~~~s  121 (303)
T 2wkj_A          104 RYGFDAVSAVTPFYYPFS  121 (303)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             hCCCCEEEecCCCCCCCC
Confidence            2  999999998887774

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=92.43  E-value=0.89  Score=40.74  Aligned_cols=193  Identities=10%  Similarity=0.003  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHhCCCcEEEeccee---cccc--cCCchhcccc-CC-CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEE
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFT---TQAI--LGNKKHCLDF-NA-EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEIN   76 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~---a~~l--~~~~~~~l~~-~~-~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~Id   76 (311)
                      |....+.+++.+-..++-+-|.-+   .+.+  +.+....++. .. ...++  +....+.+.+    +.+.++|++.|.
T Consensus        24 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v--~~l~~n~~~i----~~a~~~G~~~V~   97 (295)
T 1ydn_A           24 PTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRY--SVLVPNMKGY----EAAAAAHADEIA   97 (295)
T ss_dssp             CHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEE--EEECSSHHHH----HHHHHTTCSEEE
T ss_pred             CHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEE--EEEeCCHHHH----HHHHHCCCCEEE
Confidence            334456666666544555555543   2211  1122222211 11 23333  3444565554    445568999988


Q ss_pred             eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC--C--CCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386          77 LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI--D--DINSYDFVRDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus        77 iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~--~--~~~~~~~~~e~~~~l~~~G~~~itvh  152 (311)
                      +-.+.. ....+...+-...++.+.+.++++.+++. +++|.+-+..-+  .  ...+.+.+.++++.+.+.|++.|.+-
T Consensus        98 i~~~~S-~~h~~~~~~~~~~e~~~~~~~~v~~a~~~-G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~  175 (295)
T 1ydn_A           98 VFISAS-EGFSKANINCTIAESIERLSPVIGAAIND-GLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLG  175 (295)
T ss_dssp             EEEESC-HHHHHHHTSSCHHHHHHHHHHHHHHHHHT-TCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             EEEecC-HHHHHHHcCCCHHHHHHHHHHHHHHHHHc-CCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEec
Confidence            854221 11111112222334556667777777664 677664444322  1  11234578899999999999999886


Q ss_pred             cCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec--CCC-CHHHHHHHHhh-cCEEEEe
Q psy2386         153 ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING--GIK-TKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       153 ~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG--gI~-s~~da~~~l~~-adgVmig  214 (311)
                      .-.    |..      .|....+.++++++.+|++|+..-|  |-- ..+.+...++. ++.|-+.
T Consensus       176 Dt~----G~~------~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~s  231 (295)
T 1ydn_A          176 DTI----GRG------TPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDAS  231 (295)
T ss_dssp             ETT----SCC------CHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEB
T ss_pred             CCC----CCc------CHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEec
Confidence            321    211      1224578899999888547876655  322 12334444443 6666554

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=92.40  E-value=3  Score=38.55  Aligned_cols=84  Identities=10%  Similarity=0.164  Sum_probs=62.1

Q ss_pred             CCCCeEEEecCCC----HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE
Q psy2386          44 EEHPIAFQVGDNE----PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        44 ~~~p~~~Ql~g~~----~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      .+.|+.||=+.++    .+...+-++.+.++|+|.|++  ++|..                ...+.+..+++.+++|+.+
T Consensus        28 G~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRv--avp~~----------------~~a~al~~I~~~~~vPlva   89 (366)
T 3noy_A           28 GDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRV--AVPHK----------------EDVEALEEIVKKSPMPVIA   89 (366)
T ss_dssp             TTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEE--ECCSH----------------HHHHHHHHHHHHCSSCEEE
T ss_pred             CCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEe--CCCCh----------------HHHHHHHHHHhcCCCCEEE
Confidence            4689999988654    566666666788899999999  44532                2256778888889999999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      -+-..          ..++....++|+|.+-+.+..
T Consensus        90 DiHf~----------~~lal~a~e~G~dklRINPGN  115 (366)
T 3noy_A           90 DIHFA----------PSYAFLSMEKGVHGIRINPGN  115 (366)
T ss_dssp             ECCSC----------HHHHHHHHHTTCSEEEECHHH
T ss_pred             eCCCC----------HHHHHHHHHhCCCeEEECCcc
Confidence            76541          245666789999999887654

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=92.38  E-value=0.41  Score=43.12  Aligned_cols=85  Identities=14%  Similarity=0.147  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        20 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~   92 (294)
T 2ehh_A           20 YEALGNLIEFHVDNGTDAILVCGTTGESPTLTFE-------EHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAK   92 (294)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence            3457788999999999999999888633333211       1224455555443 2589876544455566655543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus        93 ~~Gadavlv~~P~y~~~s  110 (294)
T 2ehh_A           93 EVGADGALVVVPYYNKPT  110 (294)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999999887774

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=92.36  E-value=0.48  Score=42.82  Aligned_cols=85  Identities=15%  Similarity=0.169  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~e-------Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~  104 (301)
T 1xky_A           32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSE-------EKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKAT  104 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999888633333211       1223455555443 2589876544445555555543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       105 ~~Gadavlv~~P~y~~~s  122 (301)
T 1xky_A          105 EVGVDAVMLVAPYYNKPS  122 (301)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEEcCCCCCCCC
Confidence            2  999999999887774

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=92.36  E-value=0.42  Score=43.04  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+-|-|.....++-.       -..+.++.+.+.+ .++|||+.-|-.|.+++.++.+.  
T Consensus        22 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~   94 (292)
T 3daq_A           22 LEALKAHVNFLLENNAQAIIVNGTTAESPTLTTD-------EKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAK   94 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccccccCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHH
Confidence            3467788999999999999999888633332211       1123455444443 35899876555666777666532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+-...|..|.
T Consensus        95 ~~Gadavlv~~P~y~~~~  112 (292)
T 3daq_A           95 ALGADAIMLITPYYNKTN  112 (292)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             HcCCCEEEECCCCCCCCC
Confidence               999999988877664

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=92.35  E-value=1.3  Score=39.52  Aligned_cols=76  Identities=13%  Similarity=0.117  Sum_probs=48.5

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~  132 (311)
                      +++...+-|+.+.+.|+|.|||..-+--       -|+...   +..+.+.-+++++++ .++|+||-.+-         
T Consensus        28 ~~~~a~~~a~~m~~~GAdiIDIGgeSTR-------Pga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~---------   90 (270)
T 4hb7_A           28 NVETAINRVKAMIDEGADIIDVGGVSTR-------PGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFR---------   90 (270)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCCCS-------TTCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC---------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCC-------CCCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCC---------
Confidence            4555555566666779999999832221       233333   334566777778775 58999997653         


Q ss_pred             HHHHHHHHHHHcCCCEEE
Q psy2386         133 FVRDFVGTVSSAGCRTFI  150 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~it  150 (311)
                        .+.++...++|++.|-
T Consensus        91 --~~Va~~al~aGa~iIN  106 (270)
T 4hb7_A           91 --SEVAEACLKLGVDMIN  106 (270)
T ss_dssp             --HHHHHHHHHHTCCEEE
T ss_pred             --HHHHHHHHHhccceec
Confidence              3566667777777663

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=92.31  E-value=0.97  Score=42.40  Aligned_cols=106  Identities=24%  Similarity=0.220  Sum_probs=0.0

Q ss_pred             cCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC-ccccccCCCCcCCCCC
Q psy2386          92 GAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR-NAFLKKLNPKQNRKIP  170 (311)
Q Consensus        92 G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R-t~~~~G~~g~~~~~~~  170 (311)
                      ||..+++.+++.++-+     +++||.+|.-.    ..+.+++...++.+.+.|..-|++--| +..|..+...      
T Consensus       232 gs~~~~n~~LL~~~a~-----~gkPVilk~G~----~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~------  296 (385)
T 3nvt_A          232 GARNMQNFELLKAAGR-----VDKPILLKRGL----SATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRN------  296 (385)
T ss_dssp             CGGGTTCHHHHHHHHT-----SSSCEEEECCT----TCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSS------
T ss_pred             CcccccCHHHHHHHHc-----cCCcEEEecCC----CCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCcc------


Q ss_pred             cCcHHHHHHHHHhCCCCeEEEe----cCCCCH--HHHHHHHhh-cCEEEE
Q psy2386         171 ILKYNFVYNLKKDFPELEIIIN----GGIKTK--KEIDLHLNY-IDGVML  213 (311)
Q Consensus       171 ~~~~~~i~~i~~~~~~ipvi~n----GgI~s~--~da~~~l~~-adgVmi  213 (311)
                      .+|+..+..+++.+ ++||+..    +|-+..  .-+...... |||+||
T Consensus       297 ~ldl~~i~~lk~~~-~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~i  345 (385)
T 3nvt_A          297 TLDISAVPILKKET-HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMA  345 (385)
T ss_dssp             BCCTTHHHHHHHHB-SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEE
T ss_pred             ccCHHHHHHHHHhc-CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEE

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=92.31  E-value=0.55  Score=42.27  Aligned_cols=84  Identities=8%  Similarity=0.064  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+. ++|||+.-|=.|.+++.++.+   
T Consensus        23 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~   95 (294)
T 3b4u_A           23 IDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSR-------ERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEAL   95 (294)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHH
Confidence            4567888999999999999999988633333211       12245555565542 489875544455566655543   


Q ss_pred             h--cCEEEEehhhhhC-C
Q psy2386         207 Y--IDGVMLGREAYKN-P  221 (311)
Q Consensus       207 ~--adgVmigRa~l~~-P  221 (311)
                      .  ||+||+-...|.. |
T Consensus        96 ~~Gadavlv~~P~y~~~~  113 (294)
T 3b4u_A           96 NAGARNILLAPPSYFKNV  113 (294)
T ss_dssp             HTTCSEEEECCCCSSCSC
T ss_pred             hcCCCEEEEcCCcCCCCC
Confidence            2  9999999888877 5

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=92.30  E-value=0.45  Score=42.78  Aligned_cols=85  Identities=13%  Similarity=0.100  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+.  
T Consensus        21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~   93 (292)
T 2ojp_A           21 RASLKKLIDYHVASGTSAIVSVGTTGESATLNHD-------EHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFN   93 (292)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccchhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHH
Confidence            4567788999999999999999988633333211       1224455555443 25898765444555666555532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         +|+||+-...|..|.
T Consensus        94 ~~Gadavlv~~P~y~~~s  111 (292)
T 2ojp_A           94 DSGIVGCLTVTPYYNRPS  111 (292)
T ss_dssp             TSSCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence               999999999887774

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=92.27  E-value=0.84  Score=41.97  Aligned_cols=108  Identities=14%  Similarity=0.170  Sum_probs=68.9

Q ss_pred             CCCeEEEecC-------CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          45 EHPIAFQVGD-------NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        45 ~~p~~~Ql~g-------~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      +.|+.+-|..       .+.+++.+.|+.++++|+|.|++..|-..+.....  +      +..-.++++.+++.+++||
T Consensus       209 ~~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~--~------~~~~~~~~~~ik~~~~iPV  280 (340)
T 3gr7_A          209 DGPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNV--Y------PGYQVPFAELIRREADIPT  280 (340)
T ss_dssp             CSCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCC--C------TTTTHHHHHHHHHHTTCCE
T ss_pred             CCceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCC--C------ccccHHHHHHHHHHcCCcE
Confidence            6789888874       45788999999999999999999866432210000  1      1112355677777788998


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      .+-=+  ..+       .+-+..+.+.| +|.|.+ ||-..              .|-+++.++++.+
T Consensus       281 i~~Gg--I~s-------~e~a~~~L~~G~aD~V~i-GR~~l--------------anPdl~~ki~~~l  324 (340)
T 3gr7_A          281 GAVGL--ITS-------GWQAEEILQNGRADLVFL-GRELL--------------RNPYWPYAAAREL  324 (340)
T ss_dssp             EEESS--CCC-------HHHHHHHHHTTSCSEEEE-CHHHH--------------HCTTHHHHHHHHT
T ss_pred             EeeCC--CCC-------HHHHHHHHHCCCeeEEEe-cHHHH--------------hCchHHHHHHHHC
Confidence            76322  222       24455666666 998877 56421              2335677777765

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=92.27  E-value=4.6  Score=37.28  Aligned_cols=131  Identities=10%  Similarity=0.193  Sum_probs=78.9

Q ss_pred             eEEEecCCC---HHHHHHHHHHHHHcCCC-----EEEeccCCCccccccCccc---Cccc-------CChHHHHHHHHHH
Q psy2386          48 IAFQVGDNE---PKKLAKSAKIIQKWGYD-----EINLNCGCPSNRVQNGFFG---AILM-------TKPLLVSDCIKAM  109 (311)
Q Consensus        48 ~~~Ql~g~~---~~~~~~aa~~~~~~g~d-----~IdiN~gCP~~~v~~~~~G---~~Ll-------~~~~~~~~iv~~v  109 (311)
                      +|.=++.|-   .+...+..+.+.++|+|     .|-+..-.|-.-......+   -.+.       -..+...++. ..
T Consensus         8 IIAEig~NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~-~~   86 (350)
T 3g8r_A            8 FIFEMANNHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFKGRDDVKYVKRFEETRLQPEQMQKLV-AE   86 (350)
T ss_dssp             EEEECTTTTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGTTCCSSSSHHHHHHTCCCHHHHHHHH-HH
T ss_pred             EEEEECCCccCcHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhccCccHHHHHHHHHHhcCCHHHHHHHH-HH
Confidence            445555443   33333333344566877     8888765543322111111   1111       1233444444 44


Q ss_pred             hccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         110 RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       110 ~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      .+..++++..-   -||.        +-+..+++.|++.+.|-+|.-               -|+.+++++.+.  +.||
T Consensus        87 ~~~~Gi~~~st---~fD~--------~svd~l~~~~v~~~KI~S~~~---------------~N~pLL~~va~~--gKPv  138 (350)
T 3g8r_A           87 MKANGFKAICT---PFDE--------ESVDLIEAHGIEIIKIASCSF---------------TDWPLLERIARS--DKPV  138 (350)
T ss_dssp             HHHTTCEEEEE---ECSH--------HHHHHHHHTTCCEEEECSSST---------------TCHHHHHHHHTS--CSCE
T ss_pred             HHHcCCcEEec---cCCH--------HHHHHHHHcCCCEEEECcccc---------------cCHHHHHHHHhh--CCcE
Confidence            44468887542   2332        335566889999999998863               489999999874  6899


Q ss_pred             EEecCCCCHHHHHHHHhh
Q psy2386         190 IINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       190 i~nGgI~s~~da~~~l~~  207 (311)
                      |.+=|..|.+++....+.
T Consensus       139 iLstGmstl~Ei~~Ave~  156 (350)
T 3g8r_A          139 VASTAGARREDIDKVVSF  156 (350)
T ss_dssp             EEECTTCCHHHHHHHHHH
T ss_pred             EEECCCCCHHHHHHHHHH
Confidence            999999999999887653

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=92.22  E-value=4.7  Score=34.82  Aligned_cols=127  Identities=15%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             CCCCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          43 AEEHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      |...++.|-|||-. +++. +|    .++|+|.|=+.+--+++..          =+++.+.+|++..    ..|+.+ +
T Consensus        16 p~~~~M~VKICGit~~ed~-~a----~~~gaD~iGfIf~~~SpR~----------V~~~~A~~i~~~~----~~~~~~-v   75 (228)
T 4aaj_A           16 PRGSHMFVKICGIKSLEEL-EI----VEKHADATGVVVNSNSKRR----------IPLEKAREIIENS----AIPVFL-V   75 (228)
T ss_dssp             ----CCEEEECCCCSHHHH-HH----HHTTCSEEEEECSSSSTTB----------CCHHHHHHHHHHC----SSCEEE-E
T ss_pred             CCCCceEEEECCCCcHHHH-HH----HHcCCCEEEEEecCCCCCC----------CCHHHHHHHHHhh----CCCCEE-E
Confidence            44567889999964 5553 33    2579999999985444321          2578888887652    333321 1


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE---ecCCCC-
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII---NGGIKT-  197 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~---nGgI~s-  197 (311)
                      ....+       ..+++..+++.+.|.|.+||..                 +-+++.++++.+ ++|||=   ...+.. 
T Consensus        76 ~v~v~-------~~ei~~~i~~~~ld~vQLHG~E-----------------~~~~~~~l~~~~-~~~viKa~~v~~~~~~  130 (228)
T 4aaj_A           76 STMVG-------FSEWAMAIERTGAQYIQVHSNA-----------------LPQTIDTLKKEF-GVFVMKAFRVPTISKN  130 (228)
T ss_dssp             ECCCC-------HHHHHHHHHHHTCSEEEECSCC-----------------CHHHHHHHHHHH-CCEEEEEEECCSSCSC
T ss_pred             eccCc-------hHHHHHHHHhccchheeccccc-----------------CHHHHHHHhhcc-CceEEEEEEecccccc
Confidence            22211       2356677889999999999874                 346788888876 677753   333332 


Q ss_pred             -HHHHHHHHh----h-cCEEEEe
Q psy2386         198 -KKEIDLHLN----Y-IDGVMLG  214 (311)
Q Consensus       198 -~~da~~~l~----~-adgVmig  214 (311)
                       .+++...+.    . ||++.+-
T Consensus       131 ~~~~~~~~~~~~~~~~~d~~LlD  153 (228)
T 4aaj_A          131 PEEDANRLLSEISRYNADMVLLD  153 (228)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEE
T ss_pred             hhhhHHHHHHHHhccCCCEEccC
Confidence             344544443    2 8988873

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=92.21  E-value=1  Score=38.98  Aligned_cols=90  Identities=14%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         101 LVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       101 ~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      ...++++.+++.   |+..=+|.. +.    ++..++++.+.+.|++.|.+.-++.               ...+.++++
T Consensus        15 ~~~~~~~~l~~~---~ii~V~r~~-~~----~~~~~~~~al~~gGv~~iel~~k~~---------------~~~~~i~~l   71 (225)
T 1mxs_A           15 KAARIDAICEKA---RILPVITIA-RE----EDILPLADALAAGGIRTLEVTLRSQ---------------HGLKAIQVL   71 (225)
T ss_dssp             HHHHHHHHHHHH---SEEEEECCS-CG----GGHHHHHHHHHHTTCCEEEEESSST---------------HHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CEEEEEeCC-CH----HHHHHHHHHHHHCCCCEEEEecCCc---------------cHHHHHHHH
Confidence            355566666553   566666752 21    2468999999999999999875542               235678889


Q ss_pred             HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         181 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       181 ~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      ++.+|++. ++.|-+.+.+++...++. ||+|.+|
T Consensus        72 ~~~~~~~~-igagtvl~~d~~~~A~~aGAd~v~~p  105 (225)
T 1mxs_A           72 REQRPELC-VGAGTVLDRSMFAAVEAAGAQFVVTP  105 (225)
T ss_dssp             HHHCTTSE-EEEECCCSHHHHHHHHHHTCSSEECS
T ss_pred             HHhCcccE-EeeCeEeeHHHHHHHHHCCCCEEEeC
Confidence            98886654 566679999999999987 9999987

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=92.21  E-value=0.54  Score=42.28  Aligned_cols=85  Identities=13%  Similarity=-0.039  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh--
Q psy2386         131 YDFVRDFVGTVSS-AGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN--  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~-~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~--  206 (311)
                      ++.+..+++.+.+ .|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+  
T Consensus        23 ~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a   95 (293)
T 1f6k_A           23 EKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTE-------EKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYA   95 (293)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHH-------HHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHH
Confidence            4567788999999 999999999988633333211       1224455555443 2599886545555566655543  


Q ss_pred             -h--cCEEEEehhhhhCCc
Q psy2386         207 -Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 -~--adgVmigRa~l~~P~  222 (311)
                       .  +|+||+-...|..|.
T Consensus        96 ~~~Gadavlv~~P~y~~~~  114 (293)
T 1f6k_A           96 TELGYDCLSAVTPFYYKFS  114 (293)
T ss_dssp             HHHTCSEEEEECCCSSCCC
T ss_pred             HhcCCCEEEECCCCCCCCC
Confidence             2  999999999887774

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=92.21  E-value=2.7  Score=35.69  Aligned_cols=122  Identities=12%  Similarity=0.164  Sum_probs=78.4

Q ss_pred             EEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          49 AFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      .+.|+|- ++++.    +.+.++|+|.|=+.+--+++..          =+++.+.+|++++...+ .+|.|=  .  + 
T Consensus         3 ~vKICGit~~eda----~~a~~~GaD~iGfif~~~SpR~----------V~~~~a~~i~~~~~~~~-~~VgVf--v--n-   62 (205)
T 1nsj_A            3 RVKICGITNLEDA----LFSVESGADAVGFVFYPKSKRY----------ISPEDARRISVELPPFV-FRVGVF--V--N-   62 (205)
T ss_dssp             EEEECCCCSHHHH----HHHHHHTCSEEEEECCTTCTTB----------CCHHHHHHHHHHSCSSS-EEEEEE--S--S-
T ss_pred             cEEECCCCcHHHH----HHHHHcCCCEEEEEecCCCCCc----------CCHHHHHHHHHhCCCCC-CEEEEE--e--C-
Confidence            4788885 45554    3444789999999974333321          25788888887765421 223331  1  1 


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                       .+   ..++.+.+.+.+.|.|.+||..                 +.+++.++++   .+|||-.=.|.+.+|+.++...
T Consensus        63 -~~---~~~i~~~~~~~~ld~vQLHG~e-----------------~~~~~~~l~~---~~~vika~~v~~~~~l~~~~~~  118 (205)
T 1nsj_A           63 -EE---PEKILDVASYVQLNAVQLHGEE-----------------PIELCRKIAE---RILVIKAVGVSNERDMERALNY  118 (205)
T ss_dssp             -CC---HHHHHHHHHHHTCSEEEECSCC-----------------CHHHHHHHHT---TSEEEEEEEESSHHHHHHHGGG
T ss_pred             -CC---HHHHHHHHHhhCCCEEEECCCC-----------------CHHHHHHHhc---CCCEEEEEEcCCHHHHHHHHHc
Confidence             11   3466777788999999999863                 3366777763   3677755566777777665545


Q ss_pred             -cCEEEEe
Q psy2386         208 -IDGVMLG  214 (311)
Q Consensus       208 -adgVmig  214 (311)
                       +|++.+-
T Consensus       119 ~~d~~LlD  126 (205)
T 1nsj_A          119 REFPILLD  126 (205)
T ss_dssp             TTSCEEEE
T ss_pred             CCCEEEEC
Confidence             8888874

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=92.17  E-value=0.51  Score=42.54  Aligned_cols=85  Identities=14%  Similarity=0.135  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+.  
T Consensus        27 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~   99 (297)
T 3flu_A           27 YEQLRDLIDWHIENGTDGIVAVGTTGESATLSVE-------EHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAE   99 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCccccCcccCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHH
Confidence            4567888999999999999999988633332211       1123455554443 35898876555566666665532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+-...|..|.
T Consensus       100 ~~Gadavlv~~P~y~~~~  117 (297)
T 3flu_A          100 KAGADYTLSVVPYYNKPS  117 (297)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             HcCCCEEEECCCCCCCCC
Confidence               999999998887774

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=92.15  E-value=0.7  Score=41.98  Aligned_cols=80  Identities=13%  Similarity=0.098  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY---  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~---  207 (311)
                      ++.+..+++.+.+.|++.|.+-|-|.....++..       -..+.++.+.+.+.++|||+.=|=.|.+++.++.+.   
T Consensus        28 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~-------Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~  100 (313)
T 3dz1_A           28 DVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAA-------EAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMD  100 (313)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHH-------HHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHH-------HHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence            4567888999999999999999888633333211       123455555555546999876555566666665532   


Q ss_pred             --cCEEEEehhh
Q psy2386         208 --IDGVMLGREA  217 (311)
Q Consensus       208 --adgVmigRa~  217 (311)
                        ||+||+-...
T Consensus       101 ~Gadavlv~~P~  112 (313)
T 3dz1_A          101 AGAAGVMIAPPP  112 (313)
T ss_dssp             HTCSEEEECCCT
T ss_pred             cCCCEEEECCCC
Confidence              9999998765

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=92.14  E-value=2.7  Score=37.68  Aligned_cols=115  Identities=10%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-ccC-CCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IGI-DDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g~-~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++.+.+. ++.|-.-+- +|- .+.       ..+-+..+..+.+++.|+|.|.+.=.|. -+-|.|  
T Consensus       110 ~eeNi~~Tk~vv~~ah~~-gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~-HG~Y~~--  185 (286)
T 1gvf_A          110 FAENVKLVKSVVDFCHSQ-DCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA-HGLYSK--  185 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCC-SSCCSS--
T ss_pred             HHHHHHHHHHHHHHHHHc-CCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCcc-ccCcCC--
Confidence            445677778888777653 555544332 121 110       0111244555666789999998754442 111222  


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH-HHHHHHHhh-cCEEEEehhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGIKTK-KEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~-~da~~~l~~-adgVmigRa~  217 (311)
                         .+..|++.++++++.+ ++|++.-||=.++ +++++.+.. +--|=|++.+
T Consensus       186 ---~p~Ld~~~L~~I~~~~-~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl  235 (286)
T 1gvf_A          186 ---TPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATEL  235 (286)
T ss_dssp             ---CCCCCHHHHHHHHHHC-CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHH
T ss_pred             ---CCccCHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHH
Confidence               2458999999999998 7999999866654 456777765 7777777766

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=92.14  E-value=0.47  Score=43.59  Aligned_cols=85  Identities=8%  Similarity=0.056  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        54 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~e-------Er~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~  126 (332)
T 2r8w_A           54 IEAFSALIARLDAAEVDSVGILGSTGIYMYLTRE-------ERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAE  126 (332)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence            4567788999999999999999988633333211       1224455555443 2599875544445555555443   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       127 ~~Gadavlv~~P~Y~~~s  144 (332)
T 2r8w_A          127 AAGADALLLAPVSYTPLT  144 (332)
T ss_dssp             HHTCSEEEECCCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999988877664

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=92.13  E-value=0.46  Score=43.26  Aligned_cols=85  Identities=13%  Similarity=0.196  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.-|=.|.+++.++.+.  
T Consensus        43 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~-------Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~  115 (314)
T 3qze_A           43 WDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVE-------EHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAK  115 (314)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHH
Confidence            4567888899999999999999888633333211       1123444444443 25898876555566666665532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+-...|..|.
T Consensus       116 ~~Gadavlv~~P~y~~~s  133 (314)
T 3qze_A          116 SGGADACLLVTPYYNKPT  133 (314)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             HcCCCEEEEcCCCCCCCC
Confidence               999999999888774

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=92.12  E-value=0.68  Score=40.37  Aligned_cols=141  Identities=11%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHcCCCEEEeccC--------------------------------------------CCcccc---ccCccc
Q psy2386          60 LAKSAKIIQKWGYDEINLNCG--------------------------------------------CPSNRV---QNGFFG   92 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~g--------------------------------------------CP~~~v---~~~~~G   92 (311)
                      ..+||.+++++|+|+|-+|.-                                            |-+|-.   .+...|
T Consensus        27 pv~aA~~ae~aGAdgITvHlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~t~emi~ia~~~kP~~vtLVPE~r~e~TTegG  106 (243)
T 1m5w_A           27 PVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGG  106 (243)
T ss_dssp             HHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSSCCSC
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCCcccCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCCCcCCCcc
Confidence            567888899999999998732                                            323322   244556


Q ss_pred             CcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccccc-CCCCcCCCCCc
Q psy2386          93 AILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKK-LNPKQNRKIPI  171 (311)
Q Consensus        93 ~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G-~~g~~~~~~~~  171 (311)
                      --+..+.+.+.++++.+++. ++.||+-+-.     +     .+-++...+.|++.|-+|...  |.. +... ..   .
T Consensus       107 ldv~~~~~~l~~~i~~L~~~-GIrVSLFIDp-----d-----~~qi~aA~~~GA~~IELhTG~--Ya~a~~~~-~~---~  169 (243)
T 1m5w_A          107 LDVAGQRDKMRDACKRLADA-GIQVSLFIDA-----D-----EEQIKAAAEVGAPFIEIHTGC--YADAKTDA-EQ---A  169 (243)
T ss_dssp             CCSGGGHHHHHHHHHHHHHT-TCEEEEEECS-----C-----HHHHHHHHHTTCSEEEEECHH--HHHCCSHH-HH---H
T ss_pred             hhHHhhHHHHHHHHHHHHHC-CCEEEEEeCC-----C-----HHHHHHHHHhCcCEEEEechh--hhcCCCch-hH---H
Confidence            67788999999999999885 8999886643     1     355677799999999999543  211 1100 00   0


Q ss_pred             CcHHH---HHHHHHhCCCCeEEEecCCCCHHHHHHHH--hhcCEEEEehhhhh
Q psy2386         172 LKYNF---VYNLKKDFPELEIIINGGIKTKKEIDLHL--NYIDGVMLGREAYK  219 (311)
Q Consensus       172 ~~~~~---i~~i~~~~~~ipvi~nGgI~s~~da~~~l--~~adgVmigRa~l~  219 (311)
                      .-++.   ..+.+... .+-|-+.-|++ ++.+..+.  ....-|-||.+++.
T Consensus       170 ~el~~i~~aa~~A~~l-GL~VnAGHgL~-y~Nv~~ia~ip~i~ElnIGHaiia  220 (243)
T 1m5w_A          170 QELARIAKAATFAASL-GLKVNAGHGLT-YHNVKAIAAIPEMHELNIGHAIIG  220 (243)
T ss_dssp             HHHHHHHHHHHHHHHT-TCEEEEESSCC-TTTHHHHHTCTTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCEEecCCCCC-HHHHHHHhhCCCCeEEccCHHHHH
Confidence            01121   22223344 57776666654 33343333  33788999988855

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=92.07  E-value=0.65  Score=45.83  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=74.0

Q ss_pred             CcEEEecceecc----cccCCchhccccCCCCCCeEEEecCC------CHHHHHHHHHHHHHcCCCEEEeccCCCccccc
Q psy2386          18 YSWLYTEMFTTQ----AILGNKKHCLDFNAEEHPIAFQVGDN------EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ   87 (311)
Q Consensus        18 ~~l~~temv~a~----~l~~~~~~~l~~~~~~~p~~~Ql~g~------~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~   87 (311)
                      .|+..-|-++.-    +.+    ..++..-.+.|+.+++.-.      +-..+.+++..+...|++.|=+||++.     
T Consensus       140 vD~l~~ET~~~~~Ea~aa~----~a~~~~~~~~Pv~vS~t~~~~g~~~~G~~~~~~~~~l~~~~~~avG~NC~~g-----  210 (566)
T 1q7z_A          140 VDGIIFETFSDILELKAAV----LAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLG-----  210 (566)
T ss_dssp             CSEEEEEEECCHHHHHHHH----HHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHHHHHHTSSCSEEEEESSSC-----
T ss_pred             CCEEEEeccCCHHHHHHHH----HHHHHhCCCCcEEEEEEEcCCCeeCCCCcHHHHHHHhhccCCCEEEEeCCCC-----
Confidence            588888877532    221    1111111267888887621      123455666677778999999998752     


Q ss_pred             cCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC--------CCcHHHHHHHHHHHHHcCCCEE
Q psy2386          88 NGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD--------INSYDFVRDFVGTVSSAGCRTF  149 (311)
Q Consensus        88 ~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~--------~~~~~~~~e~~~~l~~~G~~~i  149 (311)
                                 |+.+..+++.+++..+.|++|.=..|...        +.+.+++.++++.+.+.|+..|
T Consensus       211 -----------p~~~~~~l~~l~~~~~~p~~vyPNaG~p~~~~~~~~~~~~p~~~a~~~~~~~~~G~~ii  269 (566)
T 1q7z_A          211 -----------PEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPHDFAVHIDSYYELGVNIF  269 (566)
T ss_dssp             -----------HHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEECCCCHHHHHTTHHHHHHTTCSEE
T ss_pred             -----------HHHHHHHHHHHHhcCCCEEEEEcCCCCCcccCCccccCCCHHHHHHHHHHHHHcCCcEE
Confidence                       57788889999888899999986655431        1223467788888889997766

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=92.07  E-value=2.4  Score=40.61  Aligned_cols=140  Identities=11%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             CCCCeEEEec-CCCHHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          44 EEHPIAFQVG-DNEPKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        44 ~~~p~~~Ql~-g~~~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .+.++++=+- +.-|+.++.+|+.+. ++|+|.|.+|.           +|+.         +.++...+..+.-|+|=+
T Consensus        76 ~g~~VflDlK~~DIpnT~~~~a~~~~~~lg~d~vTvh~-----------~~G~---------~~l~~~~~~~~~~v~vL~  135 (453)
T 3qw4_B           76 AGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASP-----------YMGS---------DSLQPFMRYPDKAVFVLC  135 (453)
T ss_dssp             TTSCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECS-----------TTCH---------HHHHHHHTCTTSEEEEEE
T ss_pred             CCCeEEEEeecCChHHHHHHHHHHHHHHcCCCEEEEcc-----------cCCH---------HHHHHHHHhhCCcEEEEE
Confidence            4678887775 444777777777655 59999999992           3221         233333333343455544


Q ss_pred             eccCCC----CC------c-HHHHHHHHH-HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeE
Q psy2386         122 RIGIDD----IN------S-YDFVRDFVG-TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEI  189 (311)
Q Consensus       122 R~g~~~----~~------~-~~~~~e~~~-~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipv  189 (311)
                      ++....    .+      + ++...+.++ .+.+.|.+.+.+.+..                  -+.++.+++.+++.++
T Consensus       136 ~tS~~~~~~lq~~~~~~~~~~~~V~~~a~~~~~~~g~~GvV~gat~------------------~~e~~~ir~~~~~~~~  197 (453)
T 3qw4_B          136 KTSNKGSNDLQCLRVGDRYLYEAVAERAEGPWNVNGNVGLVVGATD------------------PVALARVRARAPTLWF  197 (453)
T ss_dssp             ECSSGGGGGTTTSEETTEEHHHHHHHHHTTTTCTTSCEEEEECTTC------------------HHHHHHHHHHCSSCCE
T ss_pred             eCCCcchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCeEEEECCCC------------------HHHHHHHHHhCCCCeE
Confidence            443221    11      1 123333343 3335788888664321                  1346778887766666


Q ss_pred             EEec-CC--CCHHHHHHHHhhcCE------EEEehhhhhCCcc
Q psy2386         190 IING-GI--KTKKEIDLHLNYIDG------VMLGREAYKNPFL  223 (311)
Q Consensus       190 i~nG-gI--~s~~da~~~l~~adg------VmigRa~l~~P~i  223 (311)
                      +.-| |.  .|++++.+.-  +|.      +.+||+.+.-+..
T Consensus       198 l~PGig~qg~tp~~a~~~g--~d~~~~~~livvgR~I~~A~dp  238 (453)
T 3qw4_B          198 LVPGIGAQGGSLKASLDAG--LRADGSGMLINVSRGLARAADP  238 (453)
T ss_dssp             EECCSSTTCCCHHHHHHHH--CCTTSCCEEEEESHHHHSCSCH
T ss_pred             EECCcCCCCCCHHHHHHhc--CCcccCCceEecChhhccCCCH
Confidence            5544 22  2666665432  555      8999999876654

>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}

Probab=92.05  E-value=0.61  Score=44.39  Aligned_cols=101  Identities=9%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             CChHHHHHHHHHHhcc---c--cceeEEEEec------c-CC---CCCcHHHHHHHHHH-HHHcCCCEEEEecCcccccc
Q psy2386          97 TKPLLVSDCIKAMRDS---V--EIDITVKHRI------G-ID---DINSYDFVRDFVGT-VSSAGCRTFIVHARNAFLKK  160 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~---~--~~pvsvKiR~------g-~~---~~~~~~~~~e~~~~-l~~~G~~~itvh~Rt~~~~G  160 (311)
                      .+.+.+..++++++++   +  ++.+.+-.-.      | ++   ..-+.++.+++++. +++.++..|        .+.
T Consensus       216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~I--------EdP  287 (428)
T 3tqp_A          216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISI--------EDG  287 (428)
T ss_dssp             SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEE--------ECC
T ss_pred             cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceE--------eCC
Confidence            4556667778999998   5  4555554410      0 00   01123457788887 788876555        111


Q ss_pred             CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC---CCCHHHHHHHHhh--cCEEEEe
Q psy2386         161 LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG---IKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       161 ~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg---I~s~~da~~~l~~--adgVmig  214 (311)
                              .++-||+..+++++.+ ..||-..||   ++++.++.+.++.  ||.|++=
T Consensus       288 --------l~~dD~eg~~~L~~~~-~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iK  337 (428)
T 3tqp_A          288 --------LSENDWAGWKLLTERL-ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVK  337 (428)
T ss_dssp             --------SCTTCHHHHHHHHHHH-TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEEC
T ss_pred             --------CCcccHHHHHHHHHhc-CCCcceeccccccCCHHHHHHHHHhCCCCEEEec
Confidence                    1235899999999887 556644565   3499999999875  8877764

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=92.04  E-value=0.67  Score=43.16  Aligned_cols=94  Identities=14%  Similarity=0.165  Sum_probs=62.7

Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc--------cccCC-----------------CCcC--
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF--------LKKLN-----------------PKQN--  166 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~--------~~G~~-----------------g~~~--  166 (311)
                      +.|+.+-+-...+    .+...+.+++++++|++.|.+|--...        .+++.                 |..-  
T Consensus       132 ~~~~~~QLy~~~d----~~~~~~~~~ra~~aG~~ai~it~d~p~~g~r~~d~~~~~~~p~~~~~~~~~~~~~~~g~~l~~  207 (368)
T 2nli_A          132 GGPRWFQIYMAKD----DQQNRDILDEAKSDGATAIILTADSTVSGNRDRDVKNKFVYPFGMPIVQRYLRGTAEGMSLNN  207 (368)
T ss_dssp             TCCEEEEECCBSS----HHHHHHHHHHHHHTTCSCEEEESBCC---CBC--------CCSCCHHHHHHHTTSGGGC----
T ss_pred             CCCEEEEEeccCC----HHHHHHHHHHHHHCCCCEEEEcCCCCcccchhHHHhhcccCcchhhhhhcccccCCCCchHHh
Confidence            4677776533222    124678899999999999988743210        01110                 1110  


Q ss_pred             -C--CCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         167 -R--KIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       167 -~--~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                       .  ..+...|+.|+++++.. ++||+.-| |.++++++.+.+. +|+|.+
T Consensus       208 ~~~~~d~~~~~~~i~~lr~~~-~~PvivK~-v~~~e~a~~a~~~Gad~I~v  256 (368)
T 2nli_A          208 IYGASKQKISPRDIEEIAGHS-GLPVFVKG-IQHPEDADMAIKRGASGIWV  256 (368)
T ss_dssp             -CTTBCSBCCHHHHHHHHHHS-SSCEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred             hhhccCchhhHHHHHHHHHHc-CCCEEEEc-CCCHHHHHHHHHcCCCEEEE
Confidence             0  13446799999999998 79998874 7899999999877 999999

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=92.02  E-value=0.38  Score=43.45  Aligned_cols=85  Identities=13%  Similarity=0.075  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        20 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~-------Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~   92 (297)
T 2rfg_A           20 EKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEE-------EHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQ   92 (297)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHH-------HHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECccccchhhCCHH-------HHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHH
Confidence            3457788999999999999999888633333211       1224455555443 2589875544445555555543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus        93 ~~Gadavlv~~P~y~~~s  110 (297)
T 2rfg_A           93 QAGADAVLCVAGYYNRPS  110 (297)
T ss_dssp             HHTCSEEEECCCTTTCCC
T ss_pred             hcCCCEEEEcCCCCCCCC
Confidence            2  999999998887774

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=91.97  E-value=0.52  Score=42.34  Aligned_cols=85  Identities=13%  Similarity=0.158  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+.|-|+....++-.       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+.  
T Consensus        21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~-------Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~   93 (291)
T 3tak_A           21 WKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSME-------EHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAK   93 (291)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECccccccccCCHH-------HHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHH
Confidence            4567888999999999999999888633332211       1123455554443 25898876555566666665532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         +|+||+-...|..|.
T Consensus        94 ~~Gadavlv~~P~y~~~~  111 (291)
T 3tak_A           94 DLGADAALLVTPYYNKPT  111 (291)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEEcCCCCCCCC
Confidence               999999999888774

>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A

Probab=91.97  E-value=1.3  Score=42.54  Aligned_cols=125  Identities=10%  Similarity=0.127  Sum_probs=79.8

Q ss_pred             CHHHHHHHHH-HHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAK-IIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~-~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~  133 (311)
                      +|++.++.++ ...+.||+.+-|..|.+               +++.-.+.++++++++ ++++.|-..-+|+.    ++
T Consensus       202 ~~~~~~~~~~~~~~~~Gf~~~KlKvG~~---------------~~~~di~~v~avrea~pd~~L~vDaN~~wt~----~~  262 (464)
T 4g8t_A          202 TPESVVRLAEAAYEKYGFNDFKLKGGVL---------------DGFEEAEAVTALAKRFPDARITLDPNGAWSL----DE  262 (464)
T ss_dssp             SHHHHHHHHHHHHHHHCCSCEEEECSSS---------------CHHHHHHHHHHHHHHSTTCCEEEECTTCBCH----HH
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEeCCCC---------------CHHHHHHHHHHHHhhCCCceEEEECCCccCH----HH
Confidence            4555555444 45667999999876532               2333456677888776 45566655555643    35


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGV  211 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgV  211 (311)
                      .+++++.+++. +.++-         --.++++   ...+.+..+++++.. ++||.+.-.+.+..++.++++.  +|.+
T Consensus       263 Ai~~~~~le~~-l~wiE---------eP~~~~d---~~~~~e~~a~lr~~~-~iPIa~gE~~~~~~~~~~~i~~~avdi~  328 (464)
T 4g8t_A          263 AVKIGKQLKGV-LAYAE---------DPCGAEQ---GYSGREIMAEFRRAT-GLPTATNMIATDWRQMGHTISLQSVDIP  328 (464)
T ss_dssp             HHHHHHHTTTT-CSCEE---------SCBCCBT---TBCHHHHHHHHHHHH-CCCEEESSSSCSHHHHHHHHHHTCCSEE
T ss_pred             HHHHHHHhhhc-cceee---------cCcCccc---ccchHHHHHhhhccC-CCCccccccccchhhHHHHHHhhCCCEE
Confidence            67888888664 55441         0000000   001347788899887 7999999999999999999875  7755


Q ss_pred             EE
Q psy2386         212 ML  213 (311)
Q Consensus       212 mi  213 (311)
                      +.
T Consensus       329 ~~  330 (464)
T 4g8t_A          329 LA  330 (464)
T ss_dssp             BC
T ss_pred             ec
Confidence            43

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.95  E-value=1.1  Score=40.80  Aligned_cols=87  Identities=10%  Similarity=0.065  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCCEEEec-cCCCccccccCcccCcccCChHHHHHHHHHHhcccc--ceeEEEEeccCCCCCcHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLN-CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE--IDITVKHRIGIDDINSYDFVRDFVG  139 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN-~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~--~pvsvKiR~g~~~~~~~~~~~e~~~  139 (311)
                      .|++++++|||.|=+- .+.-.  +. -|+-...+-..+.+...++.|.+.++  +||++-+-.|+-+   .+...+.++
T Consensus        37 sA~l~e~aGf~ai~vsG~~~a~--s~-~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~---~~~v~~~v~  110 (307)
T 3lye_A           37 SARTAMELGFKSLYMTGAGTTA--SR-LGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGG---PIMVARTVE  110 (307)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHH--HH-HCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSS---HHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEeccHHHHH--Hh-cCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCC---HHHHHHHHH
Confidence            5678889999998773 11110  00 11112223345566667777877654  9999999999743   235678899


Q ss_pred             HHHHcCCCEEEEecCc
Q psy2386         140 TVSSAGCRTFIVHARN  155 (311)
Q Consensus       140 ~l~~~G~~~itvh~Rt  155 (311)
                      .++++|+++|.+-+..
T Consensus       111 ~l~~aGaagv~iEDq~  126 (307)
T 3lye_A          111 HYIRSGVAGAHLEDQI  126 (307)
T ss_dssp             HHHHTTCCEEEECCBC
T ss_pred             HHHHcCCeEEEEcCCC
Confidence            9999999999998765

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=91.93  E-value=0.49  Score=42.90  Aligned_cols=85  Identities=14%  Similarity=0.195  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~e-------Er~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~  104 (306)
T 1o5k_A           32 LESYERLVRYQLENGVNALIVLGTTGESPTVNED-------EREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAE  104 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHH-------HHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHH
Confidence            3457788999999999999999988633333211       1123455555443 2589875544445555555543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       105 ~~Gadavlv~~P~y~~~s  122 (306)
T 1o5k_A          105 KLGANGVLVVTPYYNKPT  122 (306)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999999887774

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=91.92  E-value=0.51  Score=42.98  Aligned_cols=116  Identities=13%  Similarity=0.114  Sum_probs=69.6

Q ss_pred             CCCCe-EEEecCCCHH---------------HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHH
Q psy2386          44 EEHPI-AFQVGDNEPK---------------KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIK  107 (311)
Q Consensus        44 ~~~p~-~~Ql~g~~~~---------------~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~  107 (311)
                      ..+|. ++-|.-..|+               ...+-|+...+.|+|.||||+..--|       |+ .-..++...++++
T Consensus        44 ~~~p~i~m~I~n~tpdsf~d~i~~~~~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP-------~~-~~vs~eee~~vV~  115 (310)
T 2h9a_B           44 PNPPRFALEVFDTPPTDWPDILVEPFKDVINDPVAWAKKCVEYGADIVALRLVSAHP-------DG-QNRSGAELAEVCK  115 (310)
T ss_dssp             CSCCEEEEEEESSCCSSCCHHHHGGGTTTTTCHHHHHHHHHHTTCSEEEEECGGGCT-------TT-TCCCHHHHHHHHH
T ss_pred             CCCCeEEEEEeeCCCcccchhhhhhhccHHHHHHHHHHHHHHcCCcEEEEeCccCCC-------CC-CCCCHHHHHHHHH
Confidence            45675 7777765553               22233344457899999999763211       21 2345677777999


Q ss_pred             HHhccccceeEE-EEeccCCCCCcHHHHHHHHHHHHHcCCC---EE-EEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         108 AMRDSVEIDITV-KHRIGIDDINSYDFVRDFVGTVSSAGCR---TF-IVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       108 ~v~~~~~~pvsv-KiR~g~~~~~~~~~~~e~~~~l~~~G~~---~i-tvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      .+++.+++|++| -.      .+. +.-.+.++...++|++   .| .+.+                  .+++.+..+..
T Consensus       116 ~v~~~~~vplsI~DT------~~~-~~~~~V~eaal~aga~~k~iINdvs~------------------~~~~~~~~~aa  170 (310)
T 2h9a_B          116 AVADAIDVPLMIIGC------GVE-EKDAEIFPVIGEALSGRNCLLSSATK------------------DNYKPIVATCM  170 (310)
T ss_dssp             HHHHHCSSCEEEECC------SCH-HHHHHHHHHHHHHTTTSCCEEEEECT------------------TTHHHHHHHHH
T ss_pred             HHHHhCCceEEEECC------CCC-CCCHHHHHHHHHhCCCCCCEEEECCC------------------CccHHHHHHHH
Confidence            998888999988 33      110 1124677888888886   33 1211                  13455555655


Q ss_pred             hCCCCeEEEec
Q psy2386         183 DFPELEIIING  193 (311)
Q Consensus       183 ~~~~ipvi~nG  193 (311)
                      .. +.||++.-
T Consensus       171 ~~-g~~vv~m~  180 (310)
T 2h9a_B          171 VH-GHSVVASA  180 (310)
T ss_dssp             HH-TCEEEEEC
T ss_pred             Hh-CCCEEEEC
Confidence            55 67877654

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=91.89  E-value=0.41  Score=43.17  Aligned_cols=143  Identities=11%  Similarity=0.063  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCC----CCCc
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGID----DINS  130 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~----~~~~  130 (311)
                      .+...+    +.+.++|+|.|.|-.++.-. ..+...+....+..+.+.++++.+++. +.+|.+-+...+.    ...+
T Consensus        81 ~~~~~i----~~a~~ag~~~v~i~~~~sd~-~~~~~~~~~~~e~l~~~~~~i~~a~~~-G~~v~~~l~~~~~~~~~~~~~  154 (298)
T 2cw6_A           81 PNLKGF----EAAVAAGAKEVVIFGAASEL-FTKKNINCSIEESFQRFDAILKAAQSA-NISVRGYVSCALGCPYEGKIS  154 (298)
T ss_dssp             CSHHHH----HHHHHTTCSEEEEEEESCHH-HHHHHHSCCHHHHHHHHHHHHHHHHHT-TCEEEEEEETTTCBTTTBSCC
T ss_pred             CCHHhH----HHHHHCCCCEEEEEecCCHH-HHHHHhCCCHHHHHHHHHHHHHHHHHC-CCeEEEEEEEEeeCCcCCCCC
Confidence            455544    44556899999985443321 112222333333445666666666664 7777665543221    1123


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec----CCCCHHHHHHHHh
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING----GIKTKKEIDLHLN  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG----gI~s~~da~~~l~  206 (311)
                      .+.+.++++.+.+.|++.|.+-....   ...       |..-.+.++.+++.+|++|+-.-+    |... ..+...++
T Consensus       155 ~~~~~~~~~~~~~~Ga~~i~l~DT~G---~~~-------P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~-An~laA~~  223 (298)
T 2cw6_A          155 PAKVAEVTKKFYSMGCYEISLGDTIG---VGT-------PGIMKDMLSAVMQEVPLAALAVHCHDTYGQAL-ANTLMALQ  223 (298)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEETTS---CCC-------HHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEecCCCC---CcC-------HHHHHHHHHHHHHhCCCCeEEEEECCCCchHH-HHHHHHHH
Confidence            46788999999999999998864321   111       112357888898888667775443    2222 22333343


Q ss_pred             -hcCEEEEe
Q psy2386         207 -YIDGVMLG  214 (311)
Q Consensus       207 -~adgVmig  214 (311)
                       +|+.|-..
T Consensus       224 aGa~~vd~t  232 (298)
T 2cw6_A          224 MGVSVVDSS  232 (298)
T ss_dssp             TTCCEEEEB
T ss_pred             hCCCEEEee
Confidence             37766553

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=91.84  E-value=0.53  Score=43.46  Aligned_cols=85  Identities=11%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHh---
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLN---  206 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~---  206 (311)
                      ++.+..+++.+.+.|++.|.+.|-|.....++..       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+   
T Consensus        51 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~e-------Er~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~  123 (343)
T 2v9d_A           51 KPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAE-------ERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQ  123 (343)
T ss_dssp             HHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCccccChhhCCHH-------HHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHH
Confidence            4567888999999999999999988633333211       1224455555443 2589876544455566655543   


Q ss_pred             h--cCEEEEehhhhhCCc
Q psy2386         207 Y--IDGVMLGREAYKNPF  222 (311)
Q Consensus       207 ~--adgVmigRa~l~~P~  222 (311)
                      .  ||+||+-...|..|.
T Consensus       124 ~~Gadavlv~~P~Y~~~s  141 (343)
T 2v9d_A          124 QAGADGIVVINPYYWKVS  141 (343)
T ss_dssp             HHTCSEEEEECCSSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence            2  999999999887774

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=91.82  E-value=1.3  Score=39.09  Aligned_cols=120  Identities=13%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             HHHHH-hCCCcEEEecceeccccc-CCchhcccc---CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCcc
Q psy2386          10 MFHRQ-ITRYSWLYTEMFTTQAIL-GNKKHCLDF---NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSN   84 (311)
Q Consensus        10 ~l~~~-~g~~~l~~temv~a~~l~-~~~~~~l~~---~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~   84 (311)
                      +|+|+ .+..+|+=-|.++.+..+ .+....++.   -..+.-.++=.+..||.    .|+.+++.|++.| .-.|.|. 
T Consensus        94 ~lare~~~~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~----~akrl~~~G~~aV-mPlg~pI-  167 (265)
T 1wv2_A           94 RLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPI----IARQLAEIGCIAV-MPLAGLI-  167 (265)
T ss_dssp             HHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHH----HHHHHHHSCCSEE-EECSSST-
T ss_pred             HHHHHHcCCCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHH----HHHHHHHhCCCEE-EeCCccC-
Confidence            57788 554678888988877765 432222211   11233344444667765    4677888999999 5556764 


Q ss_pred             ccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecC
Q psy2386          85 RVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus        85 ~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                           |.|..+ .|++++..|+    +..++||.+.=.++  .       .+-+..+.+.|++.+.|-..
T Consensus       168 -----GsG~Gi-~~~~lI~~I~----e~~~vPVI~eGGI~--T-------PsDAa~AmeLGAdgVlVgSA  218 (265)
T 1wv2_A          168 -----GSGLGI-CNPYNLRIIL----EEAKVPVLVDAGVG--T-------ASDAAIAMELGCEAVLMNTA  218 (265)
T ss_dssp             -----TCCCCC-SCHHHHHHHH----HHCSSCBEEESCCC--S-------HHHHHHHHHHTCSEEEESHH
T ss_pred             -----CCCCCc-CCHHHHHHHH----hcCCCCEEEeCCCC--C-------HHHHHHHHHcCCCEEEEChH
Confidence                 234333 4677765554    45689998854442  1       23456667789999988543

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=91.76  E-value=4.1  Score=37.57  Aligned_cols=127  Identities=15%  Similarity=0.190  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +.+...+.|+.+.++|++.+-...--|-+..  .+|-+ +  . +.-.++++.+++..++|+..-+   +|..     ..
T Consensus       118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~--~~f~g-l--g-~egl~~l~~~~~e~Gl~~~te~---~d~~-----~~  183 (350)
T 1vr6_A          118 GREMLMETAHFLSELGVKVLRGGAYKPRTSP--YSFQG-L--G-EKGLEYLREAADKYGMYVVTEA---LGED-----DL  183 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCST--TSCCC-C--T-HHHHHHHHHHHHHHTCEEEEEC---SSGG-----GH
T ss_pred             CHHHHHHHHHHHHHcCCCeeeeeEEeCCCCh--HhhcC-C--C-HHHHHHHHHHHHHcCCcEEEEe---CCHH-----HH
Confidence            6888889999999999999877766664421  11111 1  1 2334555666777899987632   2321     13


Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC-CHHHHHHHHhh-----cC
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK-TKKEIDLHLNY-----ID  209 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~-s~~da~~~l~~-----ad  209 (311)
                      ++   +.+. ++.+.|-+|+.               -++++++++.+ . +.||+..-|.. |++++....+.     ..
T Consensus       184 ~~---l~~~-vd~lkIgAr~~---------------~n~~LL~~va~-~-~kPVilk~G~~~tl~ei~~Ave~i~~~GN~  242 (350)
T 1vr6_A          184 PK---VAEY-ADIIQIGARNA---------------QNFRLLSKAGS-Y-NKPVLLKRGFMNTIEEFLLSAEYIANSGNT  242 (350)
T ss_dssp             HH---HHHH-CSEEEECGGGT---------------TCHHHHHHHHT-T-CSCEEEECCTTCCHHHHHHHHHHHHHTTCC
T ss_pred             HH---HHHh-CCEEEECcccc---------------cCHHHHHHHHc-c-CCcEEEcCCCCCCHHHHHHHHHHHHHCCCC
Confidence            33   4566 89999999974               37888999885 4 79999888887 88888877653     44


Q ss_pred             EEEEe-hhh
Q psy2386         210 GVMLG-REA  217 (311)
Q Consensus       210 gVmig-Ra~  217 (311)
                      -|++. ||.
T Consensus       243 ~viLceRG~  251 (350)
T 1vr6_A          243 KIILCERGI  251 (350)
T ss_dssp             CEEEEECCB
T ss_pred             eEEEEeCCC
Confidence            45665 775

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=91.75  E-value=1.4  Score=38.11  Aligned_cols=124  Identities=11%  Similarity=0.049  Sum_probs=74.8

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHh---ccccceeEEEEec-cCCC---CCcHHHHHHH
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMR---DSVEIDITVKHRI-GIDD---INSYDFVRDF  137 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~---~~~~~pvsvKiR~-g~~~---~~~~~~~~e~  137 (311)
                      ..+++.|+|-|||+.+=..        | .|--....+    +.++   +.+++||.|=||+ +-+.   +.+.+...+=
T Consensus        15 ~~A~~~GAdRIELc~~L~~--------G-GlTPS~g~i----~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~D   81 (224)
T 2bdq_A           15 TRLDKAIISRVELCDNLAV--------G-GTTPSYGVI----KEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEED   81 (224)
T ss_dssp             GGCCTTTCCEEEEEBCGGG--------T-CBCCCHHHH----HHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEcCCccc--------C-CcCCCHHHH----HHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHH
Confidence            3456789999999843111        1 121122333    4444   6678999999987 2221   1223344455


Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC---C--CCHHHHHHHHhh--cCE
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG---I--KTKKEIDLHLNY--IDG  210 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg---I--~s~~da~~~l~~--adg  210 (311)
                      ++.+.+.|++.|.+-.-|.  .          +..|.+.++++.+....+||...=-   +  .++..+.+.+..  ++.
T Consensus        82 i~~~~~~GadGvV~G~Lt~--d----------g~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~r  149 (224)
T 2bdq_A           82 ILRAVELESDALVLGILTS--N----------NHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLVALGFTR  149 (224)
T ss_dssp             HHHHHHTTCSEEEECCBCT--T----------SSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHHHTTCCE
T ss_pred             HHHHHHcCCCEEEEeeECC--C----------CCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHHHcCCCE
Confidence            6778899999998855442  1          2378888888876653577776543   2  566666555543  776


Q ss_pred             EEE
Q psy2386         211 VML  213 (311)
Q Consensus       211 Vmi  213 (311)
                      |.-
T Consensus       150 ILT  152 (224)
T 2bdq_A          150 ILL  152 (224)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            663

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=91.69  E-value=0.52  Score=42.24  Aligned_cols=86  Identities=9%  Similarity=0.006  Sum_probs=58.7

Q ss_pred             HHHHHHHHHcCCCEEEEecCc----cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cC
Q psy2386         135 RDFVGTVSSAGCRTFIVHARN----AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-ID  209 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt----~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-ad  209 (311)
                      .++++.+.++|++.|.+-...    ....|..       ...+.+.++++++.+ ++|++.++++.+.++++.+++. ||
T Consensus        31 ~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~-------~~~~~~~i~~i~~~~-~~Pvi~~~~~~~~~~~~~~~~aGad  102 (297)
T 2zbt_A           31 PEQAVIAEEAGAVAVMALERVPADIRAQGGVA-------RMSDPKIIKEIMAAV-SIPVMAKVRIGHFVEAMILEAIGVD  102 (297)
T ss_dssp             HHHHHHHHHHTCSEEEECSSCHHHHHHTTCCC-------CCCCHHHHHHHHTTC-SSCEEEEEETTCHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHCCCcEEEeccccchHHHhhcCCc-------cCCCHHHHHHHHHhc-CCCeEEEeccCCHHHHHHHHHCCCC
Confidence            578999999999999872111    0011210       123578899999887 8999999988888888888876 99


Q ss_pred             EEEEehhhhhCCcchHHhHh
Q psy2386         210 GVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~  229 (311)
                      +| .+......|.+.+.+.+
T Consensus       103 ~v-~~~~~~~~~~~~~~~~~  121 (297)
T 2zbt_A          103 FI-DESEVLTPADEEHHIDK  121 (297)
T ss_dssp             EE-EEETTSCCSCSSCCCCG
T ss_pred             EE-eeeCCCChHHHHHHHHH
Confidence            99 44433333455555543

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=91.68  E-value=0.93  Score=40.76  Aligned_cols=68  Identities=10%  Similarity=0.026  Sum_probs=47.5

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      +-++.+.++|+|.|-++.-+                  .+.++++.+.+ +++++.++||| +++.+.++.+. +|.+.+
T Consensus       209 ~ea~eAl~aGaD~I~LDn~~------------------~~~l~~av~~~~~~v~ieaSGGI-t~~~i~~~a~tGVD~Isv  269 (287)
T 3tqv_A          209 DELNQAIAAKADIVMLDNFS------------------GEDIDIAVSIARGKVALEVSGNI-DRNSIVAIAKTGVDFISV  269 (287)
T ss_dssp             HHHHHHHHTTCSEEEEESCC------------------HHHHHHHHHHHTTTCEEEEESSC-CTTTHHHHHTTTCSEEEC
T ss_pred             HHHHHHHHcCCCEEEEcCCC------------------HHHHHHHHHhhcCCceEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence            34555667899999886432                  23444444432 36899999999 57888888876 999999


Q ss_pred             ehhhhhCCc
Q psy2386         214 GREAYKNPF  222 (311)
Q Consensus       214 gRa~l~~P~  222 (311)
                      |.-...-|+
T Consensus       270 Galt~sa~~  278 (287)
T 3tqv_A          270 GAITKHIKA  278 (287)
T ss_dssp             SHHHHSBCC
T ss_pred             ChhhcCCcc
Confidence            865544444

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=91.62  E-value=7.2  Score=34.92  Aligned_cols=152  Identities=14%  Similarity=0.098  Sum_probs=97.0

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      ....|+++.+++++..+..+.++.+++.|+|++=+-  .|..+.          -+.+-+.+-.++|.+++++||.+=--
T Consensus        71 ~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~--~P~y~~----------~~~~~l~~~f~~va~a~~lPiilYn~  138 (300)
T 3eb2_A           71 QRRVPVVAGVASTSVADAVAQAKLYEKLGADGILAI--LEAYFP----------LKDAQIESYFRAIADAVEIPVVIYTN  138 (300)
T ss_dssp             TTSSCBEEEEEESSHHHHHHHHHHHHHHTCSEEEEE--ECCSSC----------CCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCCC----------CCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence            456799999999999999999999999999999873  454321          24567778888888888999987653


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKE  200 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~d  200 (311)
                      .+....+-   ..+++.+|.+.+ +-+|.-..                  .|+..+.++.+..+ ++.|+ +|+=...  
T Consensus       139 P~~tg~~l---~~~~~~~La~~pnIvgiKdss------------------gd~~~~~~~~~~~~~~f~v~-~G~d~~~--  194 (300)
T 3eb2_A          139 PQFQRSDL---TLDVIARLAEHPRIRYIKDAS------------------TNTGRLLSIINRCGDALQVF-SASAHIP--  194 (300)
T ss_dssp             TTTCSSCC---CHHHHHHHHTSTTEEEEEECS------------------SBHHHHHHHHHHHGGGSEEE-ECTTSCH--
T ss_pred             ccccCCCC---CHHHHHHHHcCCCEEEEEcCC------------------CCHHHHHHHHHHcCCCeEEE-eCcHHHH--
Confidence            33222111   135666665432 22221110                  26666777766543 35444 4543322  


Q ss_pred             HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         201 IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       201 a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                       ...+. +++|++.+.+.+ -|..+.++.+.+.
T Consensus       195 -~~~l~~G~~G~is~~an~-~P~~~~~l~~a~~  225 (300)
T 3eb2_A          195 -AAVMLIGGVGWMAGPACI-APRQSVALYELCK  225 (300)
T ss_dssp             -HHHHHTTCCEEEEGGGGT-CHHHHHHHHHHHH
T ss_pred             -HHHHhCCCCEEEeChhhh-hHHHHHHHHHHHH
Confidence             33343 499999988764 4667777666544

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=91.57  E-value=1.3  Score=43.01  Aligned_cols=93  Identities=19%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc--------cccC------------------CCC----
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF--------LKKL------------------NPK----  164 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~--------~~G~------------------~g~----  164 (311)
                      .|..+.+-.+  .+  .+...+++++++++|+++|.||--...        ..|+                  +|-    
T Consensus       247 ~~~~~QLy~~--~d--~~~~~~~~~rae~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~  322 (511)
T 1kbi_A          247 QIQWYQLYVN--SD--RKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRAL  322 (511)
T ss_dssp             CCEEEEECCC--SS--HHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGC
T ss_pred             CCeEEEEeec--CC--HHHHHHHHHHHHHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHH
Confidence            4566654322  21  124678889999999998877632110        0111                  000    


Q ss_pred             cCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         165 QNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       165 ~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .....+...|+.|+++++.. ++||+.- ++.++++++.+.+. +|+|.+
T Consensus       323 ~~~~d~~~~~~~i~~lr~~~-~~PvivK-gv~~~e~A~~a~~aGad~I~v  370 (511)
T 1kbi_A          323 SKFIDPSLTWKDIEELKKKT-KLPIVIK-GVQRTEDVIKAAEIGVSGVVL  370 (511)
T ss_dssp             BTTBCTTCCHHHHHHHHHHC-SSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred             hhccChHhHHHHHHHHHHHh-CCcEEEE-eCCCHHHHHHHHHcCCCEEEE
Confidence            00012345799999999998 7999877 46679999988876 999999

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=91.57  E-value=0.48  Score=43.20  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+..+++.+.+.|++.|.+-|-|+....++-.       -..+.++.+.+.+ .++|||+.=|=.|.+++.++.+.  
T Consensus        42 ~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~-------Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~  114 (315)
T 3si9_A           42 EKAFCNFVEWQITQGINGVSPVGTTGESPTLTHE-------EHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAE  114 (315)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEeCccccCccccCHH-------HHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHH
Confidence            4567888999999999999999888633332211       1123455555443 25898876555566666665532  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         ||+||+-...|..|.
T Consensus       115 ~~Gadavlv~~P~y~~~~  132 (315)
T 3si9_A          115 KAGADAVLVVTPYYNRPN  132 (315)
T ss_dssp             HTTCSEEEEECCCSSCCC
T ss_pred             hcCCCEEEECCCCCCCCC
Confidence               999999998887774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	311
d1vhna_	305	c.1.4.1 (A:) Putative flavin oxidoreducatase TM009	7e-30
d1ep3a_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	7e-16
d1gtea2	312	c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas	3e-09
d1ps9a1	330	c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-ter	3e-06
d1z41a1	337	c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacill	3e-04
d1gwja_	374	c.1.4.1 (A:) Morphinone reductase {Pseudomonas put	0.004

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} Length = 305

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

 Score =  113 bits (282), Expect = 7e-30
 Identities = 60/297 (20%), Positives = 120/297 (40%), Gaps = 24/297 (8%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL--GNKKHCLDFNAEEHPIAFQVGDNEPK 58
              TD   R    +     + ++EM + +  L    K   L     E  +A Q+  +EP 
Sbjct: 9   AGYTDSAFRTLAFEWGA-DFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPN 67

Query: 59  KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT 118
           +L+++A+I+ +  Y  I+LN GCP  +V     G  L+         ++ +R SV    +
Sbjct: 68  ELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFS 126

Query: 119 VKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY 178
           VK R+G +     +  R  V      G     +H R          + + + +L      
Sbjct: 127 VKTRLGWEKNEVEEIYRILV----EEGVDEVFIHTRTVVQSFTGRAEWKALSVL------ 176

Query: 179 NLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLP 236
                   +   ++G I T ++    L     DG+++ R A   P++         S   
Sbjct: 177 -----EKRIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSG-- 229

Query: 237 QYKIPTRIDIINRMILYIRQQLNN-NKIKNINSITRHMLGLMKNIKGSNKFKQILSK 292
           +Y  P+R +I+     ++   +    + K +  + + + G  K++KG+ +F++ + K
Sbjct: 230 KYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMK 286

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 74.7 bits (182), Expect = 7e-16
 Identities = 39/249 (15%), Positives = 82/249 (32%), Gaps = 11/249 (4%)

Query: 9   RMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQ 68
           R+        + +  +    + I+  K   L+ N  E PI   V  +E          I 
Sbjct: 62  RVAETASGMLNAIGLQNPGLEVIMTEKLPWLNENFPELPIIANVAGSEEADYVAVCAKIG 121

Query: 69  KW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD 127
                  I LN  CP+ +     F     T P + +  +KA +   ++ + VK    + D
Sbjct: 122 DAANVKAIELNISCPNVKHGGQAF----GTDPEVAAALVKACKAVSKVPLYVKLSPNVTD 177

Query: 128 INSYDFVRD------FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK 181
           I       +           +  G R  +   +              I  +    ++ + 
Sbjct: 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVA 237

Query: 182 KDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP 241
           +D     I + G    +  +++++     V +G   + +PF+           + QY+I 
Sbjct: 238 QDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQYRIE 297

Query: 242 TRIDIINRM 250
           +   +I  +
Sbjct: 298 SLESLIQEV 306

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 54.6 bits (130), Expect = 3e-09
 Identities = 34/233 (14%), Positives = 66/233 (28%), Gaps = 14/233 (6%)

Query: 3   LTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKLAK 62
            T         Q +  +       T      +         +   IA  +         +
Sbjct: 61  GTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNIVIASIMCSYNKNDWME 120

Query: 63  SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR 122
            ++  +  G D + LN  CP    + G         P LV +  + +R +V+I    K  
Sbjct: 121 LSRKAEASGADALELNLSCPHGMGERGMGL-ACGQDPELVRNICRWVRQAVQIPFFAKLT 179

Query: 123 IGIDDINS-----YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK-------IP 170
             + DI S      +   D V   ++      +      +      K+          I 
Sbjct: 180 PNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIR 239

Query: 171 ILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF 222
            +    V  + +  P   I+  GGI + +     L+     + +        F
Sbjct: 240 PIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDF 292

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 32/250 (12%), Positives = 76/250 (30%), Gaps = 30/250 (12%)

Query: 1   MNLTDRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL 60
           M                      ++       G   +     A    +   +    P +L
Sbjct: 73  MLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAP-SALQAPINRFVPHEL 131

Query: 61  ------------AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKP 99
                       A+ A++ ++ GYD + +                  ++  +G     + 
Sbjct: 132 SHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRM 191

Query: 100 LLVSDCIKAMRDSVEIDITVKHRIGID----DINSYDFVRDFVGTVSSAGCRTFIVHARN 155
               + ++A+R+ V  D  + +R+ +     D  ++    +    + +AG    I++   
Sbjct: 192 RFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGA--TIINTGI 249

Query: 156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVML 213
            + +   P     +P   +++V    K    L ++    I   +  D  L     D V +
Sbjct: 250 GWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSM 309

Query: 214 GREAYKNPFL 223
            R    +  L
Sbjct: 310 ARPFLADAEL 319

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} Length = 337

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 34/244 (13%), Positives = 71/244 (29%), Gaps = 31/244 (12%)

Query: 5   DRHCRMFHRQITRYSWLYTEMFTTQAILGNKKHCLDFNAEEHPIAFQVGDNEPKKL---- 60
           D H   F +   +     +++    A  G K            IAF      P ++    
Sbjct: 78  DEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDIFAPSAIAFDEQSATPVEMSAEK 137

Query: 61  --------AKSAKIIQKWGYD--EINLNCG-------CPSNRVQNGFFGAILMTKPLLVS 103
                    ++A   ++ G+D  EI+   G        P +  +   +G     +   + 
Sbjct: 138 VKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLR 197

Query: 104 DCIKAMRDSVEIDITVKHRI--GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKL 161
           + I  ++   +  + V+       D          F   +   G       +        
Sbjct: 198 EIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALV---- 253

Query: 162 NPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID--LHLNYIDGVMLGREAYK 219
                   P  + +F   +++    +     G I      +  L     D + +GRE  +
Sbjct: 254 -HADINVFPGYQVSFAEKIREQAD-MATGAVGMITDGSMAEEILQNGRADLIFIGRELLR 311

Query: 220 NPFL 223
           +PF 
Sbjct: 312 DPFF 315

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} Length = 374

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 36.0 bits (82), Expect = 0.004
 Identities = 22/173 (12%), Positives = 51/173 (29%), Gaps = 14/173 (8%)

Query: 61  AKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRD 111
            ++A+  ++ G+D + ++                 +   +G  +  +     + + A+ +
Sbjct: 166 RQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAE 225

Query: 112 SVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPI 171
               +          ++       D      +      +     A+L    P        
Sbjct: 226 VFGPERVGIRLTPFLELFGLT---DDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDIT 282

Query: 172 LKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNYIDGVMLGREAYKNPFL 223
               F   +++ F    +I  G     + +  L  N  D V  GR    NP L
Sbjct: 283 YPEGFREQMRQRFK-GGLIYCGNYDAGRAQARLDDNTADAVAFGRPFIANPDL 334

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	311
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	100.0
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.96
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	99.93
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	99.93
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	99.91
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	99.89
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	99.84
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	99.83
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.81
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	99.75
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	99.75
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.74
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	99.73
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	99.71
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	99.69
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	99.69
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.28
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.21
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	99.05
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	99.04
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	99.02
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	99.01
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	98.98
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	98.94
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	98.85
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	98.83
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	98.59
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	98.58
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	98.52
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	98.51
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	98.28
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	98.24
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	98.22
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	98.22
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	98.17
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	98.14
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	98.14
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	98.13
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	98.07
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	98.07
d2gl5a1	278	Putative dehydratase protein STM2273 {Salmonella t	98.06
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	98.05
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	98.05
d2chra1	244	Chlormuconate cycloisomerase {Alcaligenes eutrophu	97.99
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.95
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	97.94
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	97.92
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.91
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	97.91
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.91
d1rvka1	255	Hypothetical protein Atu3453 {Agrobacterium tumefa	97.89
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	97.88
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	97.83
d1muca1	242	Muconate-lactonizing enzyme {Pseudomonas putida [T	97.82
d1nu5a1	243	Chlormuconate cycloisomerase {Pseudomonas sp. p51	97.8
d1jpma1	234	L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId:	97.79
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	97.79
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	97.77
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	97.69
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	97.6
d1tzza1	247	Hypothetical protein Bll6730 {Bradyrhizobium japon	97.57
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	97.56
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	97.53
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	97.48
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	97.47
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	97.42
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	97.42
d1yeya1	252	RTS beta protein {Xanthomonas campestris pv. campe	97.42
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	97.39
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	97.33
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	97.27
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	97.26
d1sjda1	242	N-acylamino acid racemase {Amycolatopsis sp. [TaxI	97.25
d1wufa1	244	N-acylamino acid racemase {Listeria innocua [TaxId	97.25
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	97.23
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	97.2
d2mnra1	227	Mandelate racemase {Pseudomonas putida [TaxId: 303	97.19
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	97.18
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	97.14
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.13
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	97.12
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	97.12
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.11
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	97.02
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	97.01
d1r0ma1	243	N-acylamino acid racemase {Deinococcus radiodurans	96.89
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	96.87
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	96.83
d1jpdx1	208	L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId:	96.82
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	96.73
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	96.71
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	96.66
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	96.52
d1wuea1	241	N-acylamino acid racemase {Enterococcus faecalis [	96.46
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.45
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	96.44
d2gdqa1	256	Hypothetical protein YitF {Bacillus subtilis [TaxI	96.43
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	96.17
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	96.12
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	95.96
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	95.89
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	95.88
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	95.88
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	95.8
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	95.76
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	95.69
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	95.67
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	95.59
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	95.56
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	95.47
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	95.45
d1jdfa1	309	D-glucarate dehydratase {Escherichia coli [TaxId:	95.29
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	95.25
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	95.24
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	95.22
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	95.16
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	95.05
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	94.96
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	94.92
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	94.88
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	94.84
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	94.78
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	94.73
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	94.6
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	94.54
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	94.36
d2g50a2	282	Pyruvate kinase, N-terminal domain {Rabbit (Orycto	94.25
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	94.18
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	94.12
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	94.07
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	93.88
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	93.65
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	93.45
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	93.4
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	93.11
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	93.1
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	93.03
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	92.95
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	92.95
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	92.88
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	92.87
d1w3ia_	293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	92.72
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	92.6
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	92.54
d1kkoa1	251	beta-Methylaspartase {Citrobacter amalonaticus [Ta	92.13
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	92.1
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	91.93
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	91.9
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	91.7
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	91.59
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	91.41
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	91.17
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	91.1
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	91.02
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	90.95
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	90.9
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	90.44
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	90.42
d1kcza1	253	beta-Methylaspartase {Clostridium tetanomorphum [T	90.26
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	90.09
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	90.01
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	89.98
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	89.9
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	89.87
d1wdda1	325	Ribulose 1,5-bisphosphate carboxylase-oxygenase {R	89.22
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	89.02
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	88.95
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	88.52
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	88.36
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	88.19
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	87.77
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	86.58
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	86.39
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	85.39
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	85.39
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	85.35
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	85.06
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	85.0
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	84.62
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	84.58
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	84.34
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	83.78
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	83.73
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	83.39
d1h7na_	340	5-aminolaevulinate dehydratase, ALAD (porphobilino	83.36
d2d69a1	291	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	82.76
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	82.66
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	82.19
d1u83a_	249	(2r)-phospho-3-sulfolactate synthase ComA {Bacillu	81.05

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.1e-73  Score=528.55  Aligned_cols=288  Identities=21%  Similarity=0.362  Sum_probs=259.6

Q ss_pred             CCCCCHHHHHHHHHhCCCcEEEecceeccccc-CC-chhccccCCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEec
Q psy2386           1 MNLTDRHCRMFHRQITRYSWLYTEMFTTQAIL-GN-KKHCLDFNAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLN   78 (311)
Q Consensus         1 ~~~td~~fR~l~~~~g~~~l~~temv~a~~l~-~~-~~~~l~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN   78 (311)
                      +|+||+|||.+||++|+ +++||||+++++++ ++ ..+.+..++.|+|+++||+|+||+.+++||+++++ |+|+||||
T Consensus         9 ~g~td~~fR~l~~~~g~-~~~~Temi~~~~~~~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~-~~~~IdlN   86 (305)
T d1vhna_           9 AGYTDSAFRTLAFEWGA-DFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLN   86 (305)
T ss_dssp             TTTCSHHHHHHHHTTTC-CCEECSCEEHHHHHTTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHHHHTT-TCSEEEEE
T ss_pred             CCCccHHHHHHHHHHCc-CEEEECCEEechhhhCChhhHhhccCCCCCCeEEEEeccchhhhhhhhhhhhh-heeeeeEE
Confidence            69999999999999995 89999999999988 43 22333467889999999999999999999988765 99999999


Q ss_pred             cCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcccc
Q psy2386          79 CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFL  158 (311)
Q Consensus        79 ~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~  158 (311)
                      ||||+++++++|+||+||+||+++.+|++++++++++|||||+|+||++.+    ..++++.++++|++.|||||||+ .
T Consensus        87 ~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~~----~~~~~~~l~~~G~~~itvH~Rt~-~  161 (305)
T d1vhna_          87 AGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNE----VEEIYRILVEEGVDEVFIHTRTV-V  161 (305)
T ss_dssp             ECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSCC----HHHHHHHHHHTTCCEEEEESSCT-T
T ss_pred             EEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccch----hhHHHHHHHHhCCcEEEechhhh-h
Confidence            999999999999999999999999999999999999999999999998754    46899999999999999999997 4


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCCC
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNLP  236 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~~  236 (311)
                      ++|       .+++||+.|+++++   ++|||+||||.|++|+.++++.  |||||||||++.|||+|.++.+.+.++..
T Consensus       162 q~~-------~~~a~~~~i~~~~~---~ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~  231 (305)
T d1vhna_         162 QSF-------TGRAEWKALSVLEK---RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKY  231 (305)
T ss_dssp             TTT-------SSCCCGGGGGGSCC---SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCC
T ss_pred             hcc-------ccchhhhHHHhhhh---hhhhhcccccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCc
Confidence            444       45689999988865   5899999999999999999975  99999999999999999999988776554


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHh-cCCcccHHHHHHhHHHHhccCCCcHHHHHHHhCCCCCCCChHHHHHHhh
Q psy2386         237 QYKIPTRIDIINRMILYIRQQLN-NNKIKNINSITRHMLGLMKNIKGSNKFKQILSKPNLLTIDNFQFFLNTL  308 (311)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~k~~~~~~~g~~~~~~~r~~l~~~~~~~~~~~~~l~~~~  308 (311)
                        ..+++.++++.+.+|++.+.+ +|+...+..+|||+.||++|+|++++||+.|+++++.. ++.++|++++
T Consensus       232 --~~~~~~e~~~~~~~~~~~~~~~~g~~~~l~~~rkhl~~~~kg~p~ak~~R~~l~~~~~~~-el~~~l~~~~  301 (305)
T d1vhna_         232 --SEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQ-ILKEMFYNFI  301 (305)
T ss_dssp             --CCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHH-HHHHHHHHHH
T ss_pred             --ccchhHHHHHhHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCHH-HHHHHHHHHH
Confidence              568999999999999999888 77655788999999999999999999999999999988 8888888875

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.96  E-value=2.3e-29  Score=230.93  Aligned_cols=176  Identities=20%  Similarity=0.275  Sum_probs=148.9

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ...+.|+++|++|++++++.++++.+.+ +|+|+||||+|||+.+    +.+.....+|+++.+++.++++.+++|+.+|
T Consensus        95 ~~~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~p~~vk  170 (311)
T d1ep3a_          95 NFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVK----HGGQAFGTDPEVAAALVKACKAVSKVPLYVK  170 (311)
T ss_dssp             HCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGG----GTTEEGGGCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             ccCCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCccc----ccccccccCHHHHHHHHHHHHhccCCCeeee
Confidence            4568899999999999999999987754 6899999999999864    3455667899999999999999999999999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc---------------cccCCCCcCCCCCcCcHHHHHHHHHhCC
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF---------------LKKLNPKQNRKIPILKYNFVYNLKKDFP  185 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~---------------~~G~~g~~~~~~~~~~~~~i~~i~~~~~  185 (311)
                      ++.++.+.      .++++.++++|++.++++.++..               ..|++|+   ...+..|++++++++.+ 
T Consensus       171 l~~~~~~~------~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~---~i~~~~l~~i~~i~~~~-  240 (311)
T d1ep3a_         171 LSPNVTDI------VPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGP---AIKPVALKLIHQVAQDV-  240 (311)
T ss_dssp             ECSCSSCS------HHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESG---GGHHHHHHHHHHHHTTC-
T ss_pred             ecccccch------HHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCC---cccchhHHHHHHHhhhc-
Confidence            99987642      57889999999999999876421               1233333   44466899999999998 


Q ss_pred             CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         186 ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       186 ~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++|||+||||.|++|+.+++.. ||+||+|||++.+||+|.++.+.+
T Consensus       241 ~ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~~~I~~~L  287 (311)
T d1ep3a_         241 DIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKL  287 (311)
T ss_dssp             SSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHH
T ss_pred             ceeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHHHHHHHHH
Confidence            8999999999999999999976 999999999999999998886543

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=9.1e-25  Score=202.77  Aligned_cols=225  Identities=12%  Similarity=0.157  Sum_probs=175.8

Q ss_pred             CCCHHHHHHHH-HhCCCcEEEecceecc--ccc--CC----ch------h-cc-ccCCCCCCeEEEecCCC---------
Q psy2386           3 LTDRHCRMFHR-QITRYSWLYTEMFTTQ--AIL--GN----KK------H-CL-DFNAEEHPIAFQVGDNE---------   56 (311)
Q Consensus         3 ~td~~fR~l~~-~~g~~~l~~temv~a~--~l~--~~----~~------~-~l-~~~~~~~p~~~Ql~g~~---------   56 (311)
                      .|+..++.+.+ .-|..++++||.+...  +..  +.    ..      + +. ..|..+..+++||+=.-         
T Consensus        36 ~t~~~~~~y~~rA~gG~GlIite~~~V~~~~~~~~~~~~~~~d~~i~~~k~l~~avh~~G~~i~~QL~h~Gr~~~~~~~~  115 (337)
T d1z41a1          36 LTPFHMAHYISRAIGQVGLIIVEASAVNPQGRITDQDLGIWSDEHIEGFAKLTEQVKEQGSKIGIQLAHAGRKAELEGDI  115 (337)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEEEEESSGGGCSSTTSCBCSSTHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCSSCC
T ss_pred             CCHHHHHHHHHHHcCCceEEEECcEEEccccccccCccccccHHHHHHHHHHHHHhhccccccchhhhcCCCcccccCCC
Confidence            46666766664 2344699999976543  222  11    11      1 11 12667788999996210         


Q ss_pred             --------------------------HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHH
Q psy2386          57 --------------------------PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLL  101 (311)
Q Consensus        57 --------------------------~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~  101 (311)
                                                .++|++||++++++|||+||||++         +|..|.+++.||+++.++.++
T Consensus       116 ~~ps~~~~~~~~~~p~~lt~~eI~~ii~~f~~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf  195 (337)
T d1z41a1         116 FAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRF  195 (337)
T ss_dssp             EESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHH
T ss_pred             CCCcccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhH
Confidence                                      288999999999999999999987         899999999999999999999


Q ss_pred             HHHHHHHHhccccceeEEEEeccCCC--CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHH
Q psy2386         102 VSDCIKAMRDSVEIDITVKHRIGIDD--INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYN  179 (311)
Q Consensus       102 ~~~iv~~v~~~~~~pvsvKiR~g~~~--~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~  179 (311)
                      +.||+++|+++++.|+.|+++.....  ..+.++..++++.++++|+|.+.++.......     .....+....++.++
T Consensus       196 ~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~-----~~~~~~~~~~~~~~~  270 (337)
T d1z41a1         196 LREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHA-----DINVFPGYQVSFAEK  270 (337)
T ss_dssp             HHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCC-----CCCCCTTTTHHHHHH
T ss_pred             HHHHHHHHhhhhcccceEEecccccccCccchhhhHHHHHHHHHcCCccccccccccccc-----ccccCCcccHHHHHH
Confidence            99999999999999999998864222  23456788999999999999999986653111     111223356788899


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      +++.+ ++||+++|+|.|+++++++++.  ||.|++||+++.||++.+++.+.+..
T Consensus       271 ik~~~-~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~~~~~~  325 (337)
T d1z41a1         271 IREQA-DMATGAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAAKQLNT  325 (337)
T ss_dssp             HHHHH-CCEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHHHTTC
T ss_pred             HHHhc-CceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHHhhCCC
Confidence            99998 8999999999999999999986  99999999999999999999876543

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=1.8e-25  Score=205.33  Aligned_cols=176  Identities=15%  Similarity=0.196  Sum_probs=142.1

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ...+++.+..|.+++++.++++.+++.|+|+||||++||+....+ +.|..+..+|+.+.++++++++.+++||.||++.
T Consensus       102 ~~~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~-~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~  180 (312)
T d1gtea2         102 DNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGER-GMGLACGQDPELVRNICRWVRQAVQIPFFAKLTP  180 (312)
T ss_dssp             TSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHHHHHHHHHHHCSSCEEEEECS
T ss_pred             ccccccccccccchhHHHHHHHHhccCCCCeEeeccCCCCccccc-ccchhhhhhHHHHHHHHHHHhhccCCceeecccc
Confidence            344455566789999999999999999999999999999975444 5788899999999999999999999999999997


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---------------------ccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---------------------FLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---------------------~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      ..++      ..++++.++++|++.|+++.+..                     .+.|+||+   ...+..+++++++++
T Consensus       181 ~~~~------~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~---~i~~~al~~v~~~~~  251 (312)
T d1gtea2         181 NVTD------IVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGT---AIRPIALRAVTTIAR  251 (312)
T ss_dssp             CSSC------HHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESG---GGHHHHHHHHHHHHH
T ss_pred             cchh------HHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCc---CcchhhHHHHHHHHH
Confidence            6543      36789999999999999886532                     02344544   233445789999999


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC-CcchHHhHh
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN-PFLMSNFDL  229 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~-P~i~~~~~~  229 (311)
                      .++++|||++|||.|.+|+.+++.. ||+||||++++.+ |.+++++.+
T Consensus       252 ~~~~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~  300 (312)
T d1gtea2         252 ALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCT  300 (312)
T ss_dssp             HSTTCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHH
T ss_pred             HcCCCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHH
Confidence            9877999999999999999999987 9999999999866 667776654

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=8.2e-24  Score=195.76  Aligned_cols=211  Identities=15%  Similarity=0.175  Sum_probs=160.3

Q ss_pred             hCCCcEEEecceecccc--c--CC----ch------h-cc-ccCCCCCCeEEEecCC-----C-----------------
Q psy2386          15 ITRYSWLYTEMFTTQAI--L--GN----KK------H-CL-DFNAEEHPIAFQVGDN-----E-----------------   56 (311)
Q Consensus        15 ~g~~~l~~temv~a~~l--~--~~----~~------~-~l-~~~~~~~p~~~Ql~g~-----~-----------------   56 (311)
                      .| .+|++||.+....-  .  +.    ..      + +. ..|..+..+++||+-.     .                 
T Consensus        49 gG-~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~k~l~~~vh~~g~~i~~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~  127 (330)
T d1ps9a1          49 HG-VALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALQAPINRFV  127 (330)
T ss_dssp             TT-CSEEEEEEEBSSSTTCSBTTCCBCCSGGGHHHHHHHHHHHHHTTCCEEEEECCCGGGSBSTTCEESSSCCCTTCSSC
T ss_pred             CC-eEEEEEeeeEEcCCccccCCCcccCCcccccccccceeeeecCCCeehhhhhhcCCccccCcccCCccccccccCCC
Confidence            44 68999999975422  1  10    11      1 11 1266788899999611     0                 


Q ss_pred             ------------HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          57 ------------PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        57 ------------~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                                  .++|++||++++++|||+||||++         +|..|.|++.||+.+.++.+++.||+++||++++.
T Consensus       128 p~~lt~~eI~~ii~~f~~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~  207 (330)
T d1ps9a1         128 PHELSHEEILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGN  207 (330)
T ss_dssp             CEECCHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCS
T ss_pred             ChhcChhHHHHHHHHHHHHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCC
Confidence                        278999999999999999999987         89999999999999999999999999999999965


Q ss_pred             eeEEEEeccCCC----CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCC-cCcHHHHHHHHHhCCCCeEE
Q psy2386         116 DITVKHRIGIDD----INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIP-ILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       116 pvsvKiR~g~~~----~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~-~~~~~~i~~i~~~~~~ipvi  190 (311)
                      ++.|.+|+++++    ..+.++..++++.++++|++.+.++....  ....+......+ .....+.+++++.+ ++||+
T Consensus       208 d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pvi  284 (330)
T d1ps9a1         208 DFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWH--EARIPTIATPVPRGAFSWVTRKLKGHV-SLPLV  284 (330)
T ss_dssp             SSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBT--TCSSCSSSTTSCTTTTHHHHHHHTTSC-SSCEE
T ss_pred             CceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccc--cccccccCCCCcchhHHHHHHHHHhhC-CceEE
Confidence            555555554332    23467789999999999999999875532  110000011111 12345677888887 89999


Q ss_pred             EecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         191 INGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++|+|.|++++.++++.  ||.|++||+++.||++.+++++
T Consensus       285 ~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~~  325 (330)
T d1ps9a1         285 TTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQS  325 (330)
T ss_dssp             ECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHHT
T ss_pred             EeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHHc
Confidence            99999999999999986  9999999999999999999875

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.89  E-value=1.7e-22  Score=187.62  Aligned_cols=171  Identities=10%  Similarity=0.053  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCC
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGID  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~  126 (311)
                      ++|++||++++++|||+||||++         +|..|.+++.||+++.++.+++.||+++||+++  ++||.+|+...+.
T Consensus       149 ~~f~~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~~  228 (340)
T d1djqa1         149 QFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTV  228 (340)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECS
T ss_pred             HHHHHHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeecccccc
Confidence            58999999999999999999987         899999999999999999999999999999999  4677777664321


Q ss_pred             CC---CcHHHHHHHHHHHHHcCCCEEEEecCccccccCC-CCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 DI---NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLN-PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ~~---~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~-g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      ..   ...+.....+..+++.|+|.+.++...-...+.. .....+.....+++++.+++.+ ++||+++|+|+|++++.
T Consensus       229 ~~~~~~~~e~~~~~~~~l~~~~vd~~~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-~~pVi~~G~i~~~~~a~  307 (340)
T d1djqa1         229 YGPGQIEAEVDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVS-KKPVLGVGRYTDPEKMI  307 (340)
T ss_dssp             SCTTSCCTTTHHHHHHHHHTTTCSEEEEEESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTC-SSCEEECSCCCCHHHHH
T ss_pred             ccCCCCchhhhHHHHHHHHhhccceeeeeecccccccccccccccCCccccHHHHHHHHHHc-CCeEEEECCCCCHHHHH
Confidence            10   1111234556778899999999875532111111 1112223345678889999988 89999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++++.  ||+|++||+++.||++.+++++
T Consensus       308 ~~l~~G~aDlV~~gR~~iadPdl~~k~~~  336 (340)
T d1djqa1         308 EIVTKGYADIIGCARPSIADPFLPQKVEQ  336 (340)
T ss_dssp             HHHHTTSCSBEEESHHHHHCTTHHHHHHT
T ss_pred             HHHHCCCccchhhHHHHHHCccHHHHHHc
Confidence            99975  9999999999999999999875

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.84  E-value=9.8e-20  Score=170.16  Aligned_cols=161  Identities=16%  Similarity=0.206  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccC--
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGI--  125 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~--  125 (311)
                      ++|++||++++++|||+||||++         +|..|.|+|.||+.+.++.+++.||+++||++++ -+|.+++....  
T Consensus       160 ~~f~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~  239 (363)
T d1vyra_         160 NDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTF  239 (363)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCB
T ss_pred             HHHHHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccc
Confidence            57999999999999999999987         7999999999999999999999999999999984 35777766421  


Q ss_pred             C----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         126 D----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       126 ~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      +    ...+.++..++++.+++.|+|+|.+...+.  .+        .++....+.+.+++.+ ++||+++|. .|++.+
T Consensus       240 ~~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~--~~--------~~~~~~~~~~~~~~~~-~~~vi~~G~-~t~~~a  307 (363)
T d1vyra_         240 QNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL--AG--------GKPYSEAFRQKVRERF-HGVIIGAGA-YTAEKA  307 (363)
T ss_dssp             TTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT--TB--------CCCCCHHHHHHHHHHC-CSEEEEESS-CCHHHH
T ss_pred             cchhhcccchHHHHHHHHHHHhcCCeeeecccCCc--cC--------CccccHHHHHHHHHhc-CceEEecCC-CCHHHH
Confidence            1    122355788999999999999999975432  11        1223556778888888 789988774 589999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHhh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .++++.  ||.|.+||+++.||.+.+++++.
T Consensus       308 e~~l~~G~~DlV~~gR~liadP~~~~K~~~g  338 (363)
T d1vyra_         308 EDLIGKGLIDAVAFGRDYIANPDLVARLQKK  338 (363)
T ss_dssp             HHHHHTTSCSEEEESHHHHHCTTHHHHHHHT
T ss_pred             HHHHHCCCcceehhhHHHHHCccHHHHHHhC
Confidence            999986  99999999999999999998763

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=1.4e-19  Score=169.66  Aligned_cols=162  Identities=14%  Similarity=0.232  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEec---
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRI---  123 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~---  123 (311)
                      .++|++||++++++|||+||||++         +|..|.|+|.||+.+.++.+++.||+++||++++ ..|.+++..   
T Consensus       162 i~~f~~AA~rA~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~  241 (374)
T d1gwja_         162 VEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLE  241 (374)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeecc
Confidence            367999999999999999999987         6999999999999999999999999999999984 334444432   


Q ss_pred             --cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         124 --GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       124 --g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                        |..+.+.......+++.++..|++++.++....  .+   .. ... +.  .+...+++.+ ++||+++|+| +++.+
T Consensus       242 ~~g~~~~~~~~~~~~~~~~ld~~~i~~~~~~~~~~--~~---~~-~~~-~~--~~~~~i~~~~-~~pvi~~G~i-~~~~a  310 (374)
T d1gwja_         242 LFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDW--IG---GD-ITY-PE--GFREQMRQRF-KGGLIYCGNY-DAGRA  310 (374)
T ss_dssp             CTTCCCSCHHHHHHHHHHHHHHHTCSEEEEECSCB--TT---BC-CCC-CT--THHHHHHHHC-CSEEEEESSC-CHHHH
T ss_pred             ccCCcccchHHHHHHhhccccccCceEEEeccCcc--cC---CC-cch-hH--HHHHHHHHHc-CCCEEEECCc-CHHHH
Confidence              112222223345667888999999999985532  11   00 011 11  3467788888 8999999999 79999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .++++.  ||.|++||+++.||.+.+++++
T Consensus       311 e~~l~~g~aDlV~~gR~~iadPd~~~K~~~  340 (374)
T d1gwja_         311 QARLDDNTADAVAFGRPFIANPDLPERFRL  340 (374)
T ss_dssp             HHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             HHHHHcCCCcEehhhHHHHHCccHHHHHHc
Confidence            999975  9999999999999999999886

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=99.81  E-value=1.9e-19  Score=164.42  Aligned_cols=176  Identities=18%  Similarity=0.122  Sum_probs=137.5

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ...+.|+++++.|.+++++...++.+++++ +|.+|||++||+..     .+..+..+++.+.++++++++.+++||.||
T Consensus        90 ~~~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~-----~~~~~~~~~~~~~~~~~~v~~~~~~pv~vK  164 (311)
T d1juba_          90 NAQEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVP-----GEPQLAYDFEATEKLLKEVFTFFTKPLGVK  164 (311)
T ss_dssp             TCSSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSS-----SCCCGGGCHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             cccCCCceeeccccccchhHHHHHHHhhccccceeeecccccccc-----ccccccccHHHHHHHHHHhhcccccceeec
Confidence            456789999999999999999999888876 69999999999864     223456899999999999999999999999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------------ccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------------FLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------------~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      +...++..    +...+++.+.+.|++.++......                  .+.|++|+   ...+...+.+.++++
T Consensus       165 l~p~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~---~l~~~al~~i~~i~~  237 (311)
T d1juba_         165 LPPYFDLV----HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGA---YIKPTALANVRAFYT  237 (311)
T ss_dssp             ECCCCSHH----HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESG---GGHHHHHHHHHHHHT
T ss_pred             ccccchhh----HHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCcccc---ccCchHHHHHHHHHH
Confidence            99765421    345678888899999887643211                  12344544   222335677888877


Q ss_pred             hC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh-hCCcchHHhHh
Q psy2386         183 DF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY-KNPFLMSNFDL  229 (311)
Q Consensus       183 ~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l-~~P~i~~~~~~  229 (311)
                      .+ +++|||++|||.|++|+.+++.. ||.|+++++++ ..|+++.++.+
T Consensus       238 ~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~  287 (311)
T d1juba_         238 RLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIK  287 (311)
T ss_dssp             TSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHH
T ss_pred             hcCCCeeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHH
Confidence            65 46999999999999999999976 99999999984 55887766653

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.75  E-value=4.6e-18  Score=155.43  Aligned_cols=175  Identities=13%  Similarity=0.103  Sum_probs=129.6

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHH---HHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKII---QKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~---~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      ..+.|+++++.|.+.+++.+-++.+   .+.++|.||||++||+..     .+..+-.+++.+.++++++++.+++|+.+
T Consensus        89 ~~~~pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~-----~~~~~~~~~~~~~~i~~~v~~~~~~pi~v  163 (312)
T d2b4ga1          89 YSRKPLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVP-----GKPQVGYDFDTTRTYLQKVSEAYGLPFGV  163 (312)
T ss_dssp             TTTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCST-----TCCCGGGCHHHHHHHHHHHHHHHCSCEEE
T ss_pred             ccccceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcC-----cchhhhccHHHHHHHHHHhhcccccccee
Confidence            3468999999999999888877654   345789999999999863     13345688999999999999999999999


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecC----------c--------cccccCCCCcCCCCCcCcHHHHHHH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHAR----------N--------AFLKKLNPKQNRKIPILKYNFVYNL  180 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~R----------t--------~~~~G~~g~~~~~~~~~~~~~i~~i  180 (311)
                      |+....+..    .....+..+.+.+ ++.++....          +        ....|+||+.   ..+...++++++
T Consensus       164 Kl~p~~~~~----~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~---l~~~al~~v~~~  236 (312)
T d2b4ga1         164 KMPPYFDIA----HFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKY---VLPTALANVNAF  236 (312)
T ss_dssp             EECCCCCHH----HHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGG---GHHHHHHHHHHH
T ss_pred             ccccccchh----HHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCccccc---ccchhhHHHHHH
Confidence            998744321    2233444444444 444432110          0        0135677652   223457788899


Q ss_pred             HHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHh
Q psy2386         181 KKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDL  229 (311)
Q Consensus       181 ~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~  229 (311)
                      .+.+++.||+++|||.|++|+.+++.. ||.||+++++ +..|.++.++.+
T Consensus       237 ~~~~~~~~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~  287 (312)
T d2b4ga1         237 FRRCPDKLVFGCGGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNK  287 (312)
T ss_dssp             HHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHH
T ss_pred             HHHcCCCceeecCCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHHH
Confidence            888878899999999999999999976 9999999998 566988877764

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=99.75  E-value=5e-18  Score=160.26  Aligned_cols=168  Identities=11%  Similarity=0.063  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC-
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID-  126 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~-  126 (311)
                      ++|++||++++++|||+||||++         .|..|.|+|.||+++.++.+++.||+++||+++ +.||.||+..... 
T Consensus       171 ~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeYGGSlENR~Rf~~Eii~aIR~~vg~~~IgvRls~~d~~  250 (399)
T d1oyaa_         171 KEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIENRARFTLEVVDALVEAIGHEKVGLRLSPYGVF  250 (399)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCT
T ss_pred             HHHHHHHHHHHHhCCceEehhhhHHHHHHHhhcccccccccccCcchhhhhHHHHHHHHhhhheeeccCceEEechhhcc
Confidence            67999999999999999999986         799999999999999999999999999999998 3588887764211 


Q ss_pred             -------CCCcHHHHHHHHHHHHHcC-----CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         127 -------DINSYDFVRDFVGTVSSAG-----CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       127 -------~~~~~~~~~e~~~~l~~~G-----~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                             .....+...++++.++..+     .+.+.+.....+...+......+..    .....+++.+ ++|||++|+
T Consensus       251 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ik~~~-~~PVi~~G~  325 (399)
T d1oyaa_         251 NSMSGGAETGIVAQYAYVAGELEKRAKAGKRLAFVHLVEPRVTNPFLTEGEGEYEG----GSNDFVYSIW-KGPVIRAGN  325 (399)
T ss_dssp             TTCCGGGSTTHHHHHHHHHHHHHHHHHTTCCCSEEEEECTTCSCTTSCTTSSCCCS----CCTTHHHHHC-CSCEEEESS
T ss_pred             cccCCccccchHHHHHHHHHHHHHhccccccccceeeecccCCCccccccccccch----hHHHHHHHHh-CCCEEEECC
Confidence                   1111234455666666543     3344433222110000000001111    1223456777 899999999


Q ss_pred             CCCHHHHHHHH-hh-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         195 IKTKKEIDLHL-NY-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       195 I~s~~da~~~l-~~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      |.+.+++.+.+ +. ||.|.+||+++.||.+.+++++.
T Consensus       326 i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~~G  363 (399)
T d1oyaa_         326 FALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLEKG  363 (399)
T ss_dssp             CTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHHHT
T ss_pred             CCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHHcC
Confidence            99877766555 44 99999999999999999998863

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=99.74  E-value=1.1e-17  Score=156.17  Aligned_cols=163  Identities=14%  Similarity=0.125  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEEEEeccCC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITVKHRIGID  126 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsvKiR~g~~  126 (311)
                      .++|++||++++++|||+||||++         .|..|.|+|.||+.+.++.+++.||+++||++++ .++.+++....+
T Consensus       157 i~~f~~aA~rA~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~  236 (364)
T d1icpa_         157 VNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAH  236 (364)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEeccccc
Confidence            388999999999999999999986         6999999999999999999999999999999984 456776654211


Q ss_pred             C---CCcH--HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         127 D---INSY--DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       127 ~---~~~~--~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .   ..+.  ...+..+..+...+++.+.+..........        ....++....+++.+ +.||+++|++ |++++
T Consensus       237 ~~~~g~~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~~-~~~vi~~g~~-~~~~a  306 (364)
T d1icpa_         237 YNEAGDTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWE--------KIECTESLVPMRKAY-KGTFIVAGGY-DREDG  306 (364)
T ss_dssp             TTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC--------------CCCCSHHHHHHC-CSCEEEESSC-CHHHH
T ss_pred             ccCCcCcchHHHHHHHHHHhhccceeeeeeecCccccccc--------ccccHHHHHHHHHhc-CCCEEEECCC-CHHHH
Confidence            1   1111  122344555556677777665433211100        011223356678887 7999999986 78999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+.+..  ||.|++||+++.||.+.+++++
T Consensus       307 e~~l~~g~aD~V~~gR~~iadPd~~~k~~~  336 (364)
T d1icpa_         307 NRALIEDRADLVAYGRLFISNPDLPKRFEL  336 (364)
T ss_dssp             HHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             HHHHHcCCCceehhHHHHHHCccHHHHHHc
Confidence            998875  9999999999999999999875

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=99.73  E-value=1.7e-17  Score=155.64  Aligned_cols=170  Identities=15%  Similarity=0.169  Sum_probs=118.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEeccC---------CCccccccCcccCcccCChHHHHHHHHHHhccccc-eeEEEEeccCC
Q psy2386          57 PKKLAKSAKIIQKWGYDEINLNCG---------CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI-DITVKHRIGID  126 (311)
Q Consensus        57 ~~~~~~aa~~~~~~g~d~IdiN~g---------CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~-pvsvKiR~g~~  126 (311)
                      .++|++||++++++|||+||||++         +|..|.|+|.||+.+.++.+++.||+++||++++- .+.++.....+
T Consensus       158 i~~f~~aA~~A~~aGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~lEii~aIr~~vg~~~~~~~~~~~~d  237 (380)
T d1q45a_         158 VEDYCLSALNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDQYGGSIANRCRFLKQVVEGVVSAIGASKVGVRVSPAID  237 (380)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred             HHHHHHHHHHHHHhCcceeeeccchhhhHhhhhccccccCccccCccccchhhhHHHHHHHHHHHccccCceEEEeeccc
Confidence            378999999999999999999975         79999999999999999999999999999999843 23333222111


Q ss_pred             -----CCCcHH------HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC-cHHHHHHHHHhCCCCeEEEecC
Q psy2386         127 -----DINSYD------FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL-KYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       127 -----~~~~~~------~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~-~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                           .....+      ..++....+...+++++.+........+. .......+.. ...+++.+++.+ ++||+++|+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~~~ik~~~-~~pv~~~Gg  315 (380)
T d1q45a_         238 HLDATDSDPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQ-TESGRQGSDEEEAKLMKSLRMAY-NGTFMSSGG  315 (380)
T ss_dssp             GGGCCCSCHHHHHHHHHHHHHHHHHTTSSCCSEEEEECCC----------------CHHHHHHHHHHHHS-CSCEEEESS
T ss_pred             ccccccccchhhhhhhhhhhhHhhhhccccceeEEeccCccccccc-ccccccCchhhhHHHHHHHhhcc-CCcEEeCCC
Confidence                 111111      12223333445788888876432111000 0000011111 224567788887 799999999


Q ss_pred             CCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         195 IKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       195 I~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      + +++.+.+.++.  ||.|.+||+++.||++.++++.
T Consensus       316 ~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~~~  351 (380)
T d1q45a_         316 F-NKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKI  351 (380)
T ss_dssp             C-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHT
T ss_pred             C-CHHHHHHHHHcCCccchhhhHHHHHCccHHHHHhc
Confidence            8 69999999975  9999999999999999999874

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=4.1e-17  Score=150.54  Aligned_cols=175  Identities=14%  Similarity=0.149  Sum_probs=128.1

Q ss_pred             CCCCCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHH-----
Q psy2386          42 NAEEHPIAFQVGDNE-------PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM-----  109 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~-------~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v-----  109 (311)
                      ...+.|++++++++.       .+++..+.+.+. .++|.+|||++||+..      |...+.+.+.+...+.++     
T Consensus       130 ~~~~~~l~v~I~~~~~~~~~~a~~d~~~~~~~~~-~~ad~iElNiScPN~~------g~~~~~~~~~l~~~~~~~~~~~~  202 (336)
T d1f76a_         130 AHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIY-AYAGYIAINISSPNTP------GLRTLQYGEALDDLLTAIKNKQN  202 (336)
T ss_dssp             CCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHG-GGCSEEEEECCCSSST------TGGGGGSHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEEeccCCcchHHHHHHHHHHHHHhh-cccceeeecccchhhh------cccccccchhhccchhhhhhhhh
Confidence            456788999998875       345666655554 4689999999999864      233345555555444443     


Q ss_pred             ----hccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------ccccCCCCcCCCCCcCc
Q psy2386         110 ----RDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPILK  173 (311)
Q Consensus       110 ----~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------~~~G~~g~~~~~~~~~~  173 (311)
                          +...++||.+|+....+.    ++..+.++.+.+.|++.++....+.            ...|+||+   ...+..
T Consensus       203 ~~~~~~~~~~Pv~vKlsp~~~~----~~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~~~~~~~GGlSG~---~i~~~a  275 (336)
T d1f76a_         203 DLQAMHHKYVPIAVKIAPDLSE----EELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGR---PLQLKS  275 (336)
T ss_dssp             HHHHHHTSCCCEEEECCSCCCH----HHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEG---GGHHHH
T ss_pred             hhhhhccCcCCcccccchhhhh----hhhhhhHHHHHhcCccchhhhhhhhcccccccccccccccccccc---hhHHHH
Confidence                223478999999875432    2567889999999999998643211            13566665   334455


Q ss_pred             HHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhh
Q psy2386         174 YNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLN  230 (311)
Q Consensus       174 ~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~  230 (311)
                      .+.++++++.+ +++|||++|||.|++|+.+++.. ||.|+||+|+ +.+|.++.++.+.
T Consensus       276 l~~v~~v~~~~~~~ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~~Gp~ii~~I~~e  335 (336)
T d1f76a_         276 TEIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVTH  335 (336)
T ss_dssp             HHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHhcChHHHHHHHhh
Confidence            67888888875 36999999999999999999976 9999999997 7899999998764

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.2e-17  Score=150.25  Aligned_cols=180  Identities=16%  Similarity=0.132  Sum_probs=120.9

Q ss_pred             CCCCCeEEEecCCC----H-HHHHHHHHHHHHcCCCEEEeccCCCccccccCccc-CcccCChHHHHHHHHHHhccccce
Q psy2386          43 AEEHPIAFQVGDNE----P-KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFG-AILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~----~-~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G-~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      ..+.|++++++|+.    . +++..+. .....++|.++||++||+........+ ..+........+....++...++|
T Consensus       144 ~~~~pv~vsi~~~~~~~~~~~~~~~~~-~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P  222 (367)
T d1d3ga_         144 EDGLPLGVNLGKNKTSVDAAEDYAEGV-RVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPA  222 (367)
T ss_dssp             HTTCCEEEEECCCTTCSCHHHHHHHHH-HHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCE
T ss_pred             ccCceEEEEeccccccHHHHHHHHHHH-HHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCc
Confidence            34569999999863    3 3444444 444567999999999999752221110 011111122222333333445789


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc------------ccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA------------FLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~------------~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      +.+|+....+.    .+..++++.+.++|++.|+....+.            ...|++|.   ..++.....++.+++..
T Consensus       223 v~vKlsP~~~~----~~i~~~a~~~~~~g~~gi~~~nt~~~~~~~~~~~~~~~~gg~sG~---~~~~i~l~~v~~v~~~~  295 (367)
T d1d3ga_         223 VLVKIAPDLTS----QDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGK---PLRDLSTQTIREMYALT  295 (367)
T ss_dssp             EEEEECSCCCH----HHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEG---GGHHHHHHHHHHHHHHT
T ss_pred             cccccCcccch----hhhhhhHHHHHhhhhheeecccccccccccccccccccccccccc---cchhhhHHHHHHHHHHh
Confidence            99999985433    2467889999999999999754431            12345554   23344567777777655


Q ss_pred             -CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh-hhCCcchHHhHhh
Q psy2386         185 -PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA-YKNPFLMSNFDLN  230 (311)
Q Consensus       185 -~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~-l~~P~i~~~~~~~  230 (311)
                       +++|||++|||.|++|+.+++.. ||.||||+++ +.+|.++.++.+.
T Consensus       296 ~~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp~ii~~I~~~  344 (367)
T d1d3ga_         296 QGRVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPPVVGKVKRE  344 (367)
T ss_dssp             TTCSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTHHHHHHHHH
T ss_pred             CCCccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCcHHHHHHHHH
Confidence             26999999999999999999976 9999999997 7899998877653

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.69  E-value=5.7e-17  Score=153.40  Aligned_cols=173  Identities=12%  Similarity=0.110  Sum_probs=129.3

Q ss_pred             CCCeEEEecCC----CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-------
Q psy2386          45 EHPIAFQVGDN----EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-------  113 (311)
Q Consensus        45 ~~p~~~Ql~g~----~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-------  113 (311)
                      ..++.+++.-+    +.......+......++|.++||.+||+..      |..-+++++.+.++++++++..       
T Consensus       148 ~~i~gi~~~~~~~~~~~~~~~~~~~~~~~~~aD~~elNiScPNt~------glr~~~~~~~L~~ll~~v~~~~~~~~~~~  221 (409)
T d1tv5a1         148 KHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTP------GLRDNQEAGKLKNIILSVKEEIDNLEKNN  221 (409)
T ss_dssp             TCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTST------TGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred             ccccccccccccchhHHHHHHHHHHHHHhhcccceeecccccccc------ccccccCHHHHHHHHHHHHHHHHhhhccc
Confidence            34466666543    233333333344445689999999999974      4455689999999999997643       


Q ss_pred             --------------------------------------------cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEE
Q psy2386         114 --------------------------------------------EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTF  149 (311)
Q Consensus       114 --------------------------------------------~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~i  149 (311)
                                                                  ..||.||+....++    +++.++++.+++.|++.+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ppi~vKlsPd~~~----~~i~~i~~~~~~~g~dgi  297 (409)
T d1tv5a1         222 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQ----EQKKEIADVLLETNIDGM  297 (409)
T ss_dssp             -----------------------------------CCCCSSSSSCCEEEEEECSCCCH----HHHHHHHHHHHHTTCSEE
T ss_pred             ccccccccccchhhhhhccccccccccccccchhhhhhccccccCCceEEEeCCCCCc----hhhHHHHHHHHhccccce
Confidence                                                        23899999985543    257899999999999999


Q ss_pred             EEecCcc----------ccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         150 IVHARNA----------FLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       150 tvh~Rt~----------~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      ++...+.          ..+|+||+   ...+...+.++++++.+ +++|||++|||.|++||.+++.. ||.|+||+|+
T Consensus       298 i~~Nt~~~~~~~~~~~~~~GGlSG~---~l~~~al~~v~~v~~~~~~~ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~l  374 (409)
T d1tv5a1         298 IISNTTTQINDIKSFENKKGGVSGA---KLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEAGASVCQLYSCL  374 (409)
T ss_dssp             EECCCBSCCCCCGGGTTCCSEEEEH---HHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHH
T ss_pred             ecccccccccccccccccCCcccch---hHHHHHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHHHcCCCHHhhhhHH
Confidence            9875542          13566665   23344577889998877 35999999999999999999976 9999999998


Q ss_pred             -hhCCcchHHhHhh
Q psy2386         218 -YKNPFLMSNFDLN  230 (311)
Q Consensus       218 -l~~P~i~~~~~~~  230 (311)
                       +..|.++.++.+.
T Consensus       375 i~~Gp~~v~~I~~~  388 (409)
T d1tv5a1         375 VFNGMKSAVQIKRE  388 (409)
T ss_dssp             HHHGGGHHHHHHHH
T ss_pred             HhcChHHHHHHHHH
Confidence             6779998887654

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.28  E-value=4.5e-11  Score=102.20  Aligned_cols=159  Identities=12%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEecc-----------CCCccccccCcccC---cccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNC-----------GCPSNRVQNGFFGA---ILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~-----------gCP~~~v~~~~~G~---~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      +|+.++++|+.+...|+.+|.+|.           .+|.....+..+..   .+....+...+.+.+   ..+. +.+..
T Consensus        21 ~~~~~a~~A~aa~~~Ga~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a---gad~-v~~~~   96 (222)
T d1y0ea_          21 SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES---QCEV-IALDA   96 (222)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH---TCSE-EEEEC
T ss_pred             CcHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHc---CCCE-EEeec
Confidence            568888888888888999999974           45544333333222   222333444333333   1221 11211


Q ss_pred             eccCCCCCcHH-------------------HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         122 RIGIDDINSYD-------------------FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       122 R~g~~~~~~~~-------------------~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      ..........+                   ...+-+..+.+.|+++|.++.+... .+.   ........+|+.+.++++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~-~~~---~~~~~~~~~~~~i~~~~~  172 (222)
T d1y0ea_          97 TLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYT-SYT---QGQLLYQNDFQFLKDVLQ  172 (222)
T ss_dssp             SCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSS-TTS---TTCCTTHHHHHHHHHHHH
T ss_pred             cccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCc-ccc---cCccchhhHHHHHHHHHh
Confidence            11111111000                   0123456678899998876544310 010   111223346899999999


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcch
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLM  224 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~  224 (311)
                      .+ ++||+++|||.|++|+.++++. ||||||||++ .+|+.+
T Consensus       173 ~~-~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi-~rp~~~  213 (222)
T d1y0ea_         173 SV-DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAI-TRPKEI  213 (222)
T ss_dssp             HC-CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH-HCHHHH
T ss_pred             cC-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhh-cCHHHH
Confidence            98 8999999999999999999987 9999999976 478754

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.21  E-value=1.2e-10  Score=100.31  Aligned_cols=162  Identities=12%  Similarity=0.032  Sum_probs=94.8

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEec-----------cCCCccccccCcccCcccCChHHHHHHHHHHhcccc-ceeEE
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLN-----------CGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE-IDITV  119 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN-----------~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~-~pvsv  119 (311)
                      +.+++++.+++.|+.+.+.|+.+|.+|           ..+|.....+...+......+....+.-.......+ +.+.+
T Consensus        27 ~~~~~~~~v~~~A~a~~~~Ga~~i~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~  106 (230)
T d1yxya1          27 LYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDC  106 (230)
T ss_dssp             TCCTTCCSHHHHHHHHHHHTCSEEEEESHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEEC
T ss_pred             ccCCChHHHHHHHHHHHHCCCeEEEecChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEec
Confidence            457788888888888889999999997           345544333322222111111122222222222222 11111


Q ss_pred             EEeccCCCCCcHH------------------HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHH
Q psy2386         120 KHRIGIDDINSYD------------------FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLK  181 (311)
Q Consensus       120 KiR~g~~~~~~~~------------------~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~  181 (311)
                      ..+..++.....+                  ...+-++.++++|+++|.+++|...  +..+    ...+..+. +.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~--~~~~----~~~~~~~~-~~~~~  179 (230)
T d1yxya1         107 TKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYT--PYSR----QEAGPDVA-LIEAL  179 (230)
T ss_dssp             CSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSS--TTSC----CSSSCCHH-HHHHH
T ss_pred             ccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeeccccc--cccc----ccchHHHH-HHHHH
Confidence            1111111110000                  0134577788999999999887642  1111    11223444 55556


Q ss_pred             HhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         182 KDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       182 ~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.. ++||+++|||+|++|+.++++. ||+||||+++. +|.
T Consensus       180 ~~~-~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~-~p~  219 (230)
T d1yxya1         180 CKA-GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT-RPK  219 (230)
T ss_dssp             HHT-TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH-CHH
T ss_pred             hcC-CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc-CHH
Confidence            666 7999999999999999999987 99999999875 565

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=1.5e-09  Score=95.16  Aligned_cols=157  Identities=10%  Similarity=0.153  Sum_probs=117.9

Q ss_pred             CeEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEe-
Q psy2386          47 PIAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR-  122 (311)
Q Consensus        47 p~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR-  122 (311)
                      .+-+|++|.  +.++.    +.+-+.|++-|=||              +.++++|+++.++.+...... -.-+.+|.+ 
T Consensus        74 ~~pi~vgGGIrs~e~~----~~ll~~Ga~kVii~--------------s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~~  135 (251)
T d1ka9f_          74 FIPLTVGGGVRSLEDA----RKLLLSGADKVSVN--------------SAAVRRPELIRELADHFGAQAVVLAIDARWRG  135 (251)
T ss_dssp             CSCEEEESSCCSHHHH----HHHHHHTCSEEEEC--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEET
T ss_pred             CcchheeccccCHHHH----HHHHHcCCCEEEEC--------------chhhhCHHHHHHHHHhhcccccccccchhhcc
Confidence            345666663  44433    45556798888775              667899999999999885543 222333322 


Q ss_pred             -------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         123 -------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       123 -------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                             .||...... .+.++++.+++.|+..+.++.  |.++.+|           .|++.++++++.. ++|+|+.|
T Consensus       136 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~eii~tdi~~dG~~~G-----------~d~~l~~~i~~~~-~~pii~~G  202 (251)
T d1ka9f_         136 DFPEVHVAGGRVPTGL-HAVEWAVKGVELGAGEILLTSMDRDGTKEG-----------YDLRLTRMVAEAV-GVPVIASG  202 (251)
T ss_dssp             TEEEEEETTTTEEEEE-EHHHHHHHHHHHTCCEEEEEETTTTTTCSC-----------CCHHHHHHHHHHC-SSCEEEES
T ss_pred             cceEEEeccceecCCc-cHHHHHHHHHhcCCCEEEEEeecccCccCC-----------cchhHHHHHHhhc-ceeEEEec
Confidence                   255443322 367999999999999999985  4333344           5899999999987 79999999


Q ss_pred             CCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         194 GIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       194 gI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                      |+.|.+|+.+++.. ++||++|++++.+-.-..++++++...
T Consensus       203 Gv~~~~dl~~l~~~g~~gviig~al~~g~~~~~~~k~~l~~~  244 (251)
T d1ka9f_         203 GAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAEK  244 (251)
T ss_dssp             CCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHCCCCEEEEhHHHHcCCCCHHHHHHHHHHC
Confidence            99999999999976 999999999999888888888776554

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.04  E-value=1.7e-09  Score=94.93  Aligned_cols=143  Identities=11%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEEe--------ccCCCCCcHHHHH
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKHR--------IGIDDINSYDFVR  135 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKiR--------~g~~~~~~~~~~~  135 (311)
                      +.+.+.|++-|-+|              +.+.++|+++.++.+..-+. +-+.+.+|..        -||...... .+.
T Consensus        92 ~~ll~~G~~kVii~--------------s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~-~~~  156 (252)
T d1h5ya_          92 TTLFRAGADKVSVN--------------TAAVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGL-DAV  156 (252)
T ss_dssp             HHHHHHTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEE-EHH
T ss_pred             hhHhhcCCcEEEec--------------ccccCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCC-CHH
Confidence            34456688888765              66789999999999988653 3333444422        245443322 357


Q ss_pred             HHHHHHHHcCCCEEEEecC--ccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         136 DFVGTVSSAGCRTFIVHAR--NAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~R--t~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ++++.+++.|+..+.++.-  ....+|           .|++.++++++.. ++||++.|||.+.+|+.++... ++||.
T Consensus       157 ~~~~~~~~~g~~eii~tdI~~dG~~~G-----------~d~~~~~~i~~~~-~~pii~~GGv~~~~di~~l~~~g~~gv~  224 (252)
T d1h5ya_         157 KWAKEVEELGAGEILLTSIDRDGTGLG-----------YDVELIRRVADSV-RIPVIASGGAGRVEHFYEAAAAGADAVL  224 (252)
T ss_dssp             HHHHHHHHHTCSEEEEEETTTTTTCSC-----------CCHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHhcCCCEEEEEeecccCccCC-----------cCHHHHHHHHHhc-CCCEEEecCCCCHHHHHHHHHCCCCEEE
Confidence            8999999999999999854  333334           5999999999987 7999999999999999998766 99999


Q ss_pred             EehhhhhCCcchHHhHhhhccC
Q psy2386         213 LGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~~~~  234 (311)
                      +|++++.+-.-..++++.+...
T Consensus       225 ~gs~l~~~~~~~~~lk~~l~~~  246 (252)
T d1h5ya_         225 AASLFHFRVLSIAQVKRYLKER  246 (252)
T ss_dssp             ESHHHHTTSSCHHHHHHHHHHT
T ss_pred             EhhHHHcCCCCHHHHHHHHHHc
Confidence            9999988887777777766543

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=2.7e-09  Score=93.65  Aligned_cols=155  Identities=15%  Similarity=0.204  Sum_probs=113.3

Q ss_pred             EEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcc-ccceeEEEE----
Q psy2386          49 AFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS-VEIDITVKH----  121 (311)
Q Consensus        49 ~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~-~~~pvsvKi----  121 (311)
                      =+|++|.  +.++    ++.+.+.|++-|=||              +.+++||+++.++.+..-+. +-..+.++.    
T Consensus        76 pi~vgGGIr~~e~----i~~~l~~Ga~kviig--------------s~~~~n~~~l~~~~~~~G~~~iv~~id~~~~~~~  137 (253)
T d1thfd_          76 PFTVGGGIHDFET----ASELILRGADKVSIN--------------TAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGE  137 (253)
T ss_dssp             CEEEESSCCSHHH----HHHHHHTTCSEEEES--------------HHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTE
T ss_pred             cceeecccccchh----hhhHHhcCCCEEEEC--------------hHHhhChHHHHHHHHHcCCeeEEEeeeecccCCc
Confidence            3666653  4443    344556799888775              77889999999999998544 222222221    


Q ss_pred             ---e-ccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         122 ---R-IGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       122 ---R-~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                         - -+|...... .+.++++.+++.|+..+.++.  |..+.+|           .|++.+.++++.. ++||++.|||
T Consensus       138 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~eii~tdI~~dGt~~G-----------~d~~ll~~i~~~~-~~pvi~~GGv  204 (253)
T d1thfd_         138 FMVFTYSGKKNTGI-LLRDWVVEVEKRGAGEILLTSIDRDGTKSG-----------YDTEMIRFVRPLT-TLPIIASGGA  204 (253)
T ss_dssp             EEEEETTTTEEEEE-EHHHHHHHHHHTTCSEEEEEETTTTTSCSC-----------CCHHHHHHHGGGC-CSCEEEESCC
T ss_pred             eeeeeeecccccch-hHHHHHHHHHhccCCEEEEEEecccCccCC-----------ccccccccccccc-cceEEEecCC
Confidence               0 134332222 467899999999999999874  3333333           5999999998886 7999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccC
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSN  234 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~  234 (311)
                      .|++|+.+++.. ++||.+|++++.+-.-..++++.+...
T Consensus       205 ~s~~di~~l~~~g~~gvivgsal~~~~~~~~~~k~~l~~~  244 (253)
T d1thfd_         205 GKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKKH  244 (253)
T ss_dssp             CSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHCCCCEEEEchHHHcCCCCHHHHHHHHHHC
Confidence            999999999876 999999999998888788887766554

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=99.01  E-value=1.8e-09  Score=97.66  Aligned_cols=174  Identities=10%  Similarity=0.105  Sum_probs=118.0

Q ss_pred             CCCeEEEecCC--CHHHH-------HHHHHHHHHcCCCEEEeccCC---CccccccCcccCcccCChHHHHHHHHHHhcc
Q psy2386          45 EHPIAFQVGDN--EPKKL-------AKSAKIIQKWGYDEINLNCGC---PSNRVQNGFFGAILMTKPLLVSDCIKAMRDS  112 (311)
Q Consensus        45 ~~p~~~Ql~g~--~~~~~-------~~aa~~~~~~g~d~IdiN~gC---P~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~  112 (311)
                      +..+=+|++|.  +.+++       .+.|+.+-+.|+|-|-||-..   |.- +.   .=+.+..+|.++.++++..-+.
T Consensus        93 ~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~~-~~---e~~~~~~n~~li~~i~~~fGsq  168 (323)
T d1jvna1          93 TVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAEK-YY---ELGNRGDGTSPIETISKAYGAQ  168 (323)
T ss_dssp             TCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHHH-HH---HTTSCCCSCSHHHHHHHHHCGG
T ss_pred             ccceeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChHH-HH---HHHhhcccchhHHHHHHHhCCc
Confidence            44455777874  33332       334555666799999998221   100 00   0011235777888888877543


Q ss_pred             -ccceeEEEEe--------------------------------ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--c
Q psy2386         113 -VEIDITVKHR--------------------------------IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--F  157 (311)
Q Consensus       113 -~~~pvsvKiR--------------------------------~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--~  157 (311)
                       +-+.+.+|-.                                -||...... .+.++++.+++.|+..|.++..+.  +
T Consensus       169 ~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~~gg~~~t~~-~l~~~i~~~~~~G~GEIlltdIdrDGt  247 (323)
T d1jvna1         169 AVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQCTIKGGRESRDL-GVWELTRACEALGAGEILLNCIDKDGS  247 (323)
T ss_dssp             GEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEEEEETTTTEEEEE-EHHHHHHHHHHTTCCEEEECCGGGTTT
T ss_pred             eEEEEEEEEeccccccccccccccccccccCCCccceeEEEEEcCCeEecCc-hHHHHhhhhhccCcceeEEEeeccccc
Confidence             2222323211                                123322222 468999999999999999997653  2


Q ss_pred             cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCcchHHhHhhhccCC
Q psy2386         158 LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPFLMSNFDLNYYSNL  235 (311)
Q Consensus       158 ~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~i~~~~~~~~~~~~  235 (311)
                      ..|           .|++.+.++++.+ ++|||++||+.+++|+.+++..  ++||.+|++++.+-.-+.++++.+...+
T Consensus       248 ~~G-----------~D~el~~~i~~~~-~iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~elK~~L~~~~  315 (323)
T d1jvna1         248 NSG-----------YDLELIEHVKDAV-KIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLEHG  315 (323)
T ss_dssp             CSC-----------CCHHHHHHHHHHC-SSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHHTT
T ss_pred             ccc-----------cchhHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHHHHHHHHCC
Confidence            333           5999999999998 7999999999999999998864  9999999999988888888887776543

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.98  E-value=5.8e-09  Score=94.50  Aligned_cols=160  Identities=11%  Similarity=0.089  Sum_probs=101.1

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      ...+..+++.....-.  ...+.++..|++.+.+|..||.......+.     .+...+.+.++.+++..+.|+.+|.-.
T Consensus        95 ~~~~~~~~~~~~~~~~--~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~i~~~~~~~vivk~v~  167 (329)
T d1p0ka_          95 PNGLIFANLGSEATAA--QAKEAVEMIGANALQIHLNVIQEIVMPEGD-----RSFSGALKRIEQICSRVSVPVIVKEVG  167 (329)
T ss_dssp             SSSCEEEEEETTCCHH--HHHHHHHHTTCSEEEEEECTTTTC-------------CTTHHHHHHHHHHHCSSCEEEEEES
T ss_pred             CcceEEEeeccchhHH--HHHHHHHHcCCCEEEecccccchhhhcccc-----ccccchHHHHHHHHHHcCCCcEEEecC
Confidence            3455666665544322  223455678999999999999865443321     233445566778888889999998653


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccc-ccc--------CCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAF-LKK--------LNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-~~G--------~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      ....       .+.++.+.++|+|+|.|.+.... ...        ..|.. .....+..+.+.++....+++|||+.||
T Consensus       168 ~~~~-------~~~a~~~~~~GaD~i~v~~~gG~~~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~~~v~viadGG  239 (329)
T d1p0ka_         168 FGMS-------KASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFF-NSWGISTAASLAEIRSEFPASTMIASGG  239 (329)
T ss_dssp             SCCC-------HHHHHHHHHHTCSEEEEEC---------------CCGGGG-TTCSCCHHHHHHHHHHHCTTSEEEEESS
T ss_pred             Ccch-------HHHHHHHHhcCCCEEEEcCCCCCCccccchhhcccCccch-hHhHHHHHHHHHHHHhhcCCceEEEcCC
Confidence            3222       35677788999999998543210 000        00000 0111233455666666666899999999


Q ss_pred             CCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         195 IKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      |++..|+.+++.. ||+||+||+++
T Consensus       240 Ir~g~Dv~KAlalGAdaV~iGr~~l  264 (329)
T d1p0ka_         240 LQDALDVAKAIALGASCTGMAGHFL  264 (329)
T ss_dssp             CCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             cccHHHHHHHHHcCCCchhccHHHH
Confidence            9999999999987 99999999764

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.94  E-value=7.1e-09  Score=90.05  Aligned_cols=149  Identities=15%  Similarity=0.307  Sum_probs=108.0

Q ss_pred             eEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--
Q psy2386          48 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--  123 (311)
Q Consensus        48 ~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--  123 (311)
                      +=+|++|.  +.++.    +.+-+.|++-|-+|              +...++|+++.++.+...+.+  -|++..+-  
T Consensus        75 ~pi~vGGGIrs~~~~----~~ll~~Ga~kVvi~--------------s~~~~~~~~~~~~~~~~g~~~--vv~~d~~~~~  134 (239)
T d1vzwa1          75 IKVELSGGIRDDDTL----AAALATGCTRVNLG--------------TAALETPEWVAKVIAEHGDKI--AVGLDVRGTT  134 (239)
T ss_dssp             SEEEEESSCCSHHHH----HHHHHTTCSEEEEC--------------HHHHHCHHHHHHHHHHHGGGE--EEEEEEETTE
T ss_pred             cceEeecccccchhh----hhhhccccccchhh--------------HHhhhccccchhhhccCCcee--eeeeccceee
Confidence            44677664  55543    34556788888876              567899999999999887653  33444332  


Q ss_pred             ----cCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCC
Q psy2386         124 ----GIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       124 ----g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s  197 (311)
                          ||.....  ...++.+.+.+.|+..+.++.  |..+.+|           .|++.+.++.+.. ++|+++.|||.|
T Consensus       135 ~~~~g~~~~~~--~~~~~~~~~~~~g~~eii~tdi~~dGt~~G-----------~d~~l~~~i~~~~-~~pvi~sGGv~s  200 (239)
T d1vzwa1         135 LRGRGWTRDGG--DLYETLDRLNKEGCARYVVTDIAKDGTLQG-----------PNLELLKNVCAAT-DRPVVASGGVSS  200 (239)
T ss_dssp             ECCSSSCCCCC--BHHHHHHHHHHTTCCCEEEEEC-------C-----------CCHHHHHHHHHTC-SSCEEEESCCCS
T ss_pred             ecCccceeecc--ccchhhhhhhhccccEEEEEeecccceecC-----------Ccchhhhhhhhcc-CceEEEECCCCC
Confidence                4544332  356788999999999999984  4444444           4899999999887 799999999999


Q ss_pred             HHHHHHHH--h--hcCEEEEehhhhhCCcchHHhHhh
Q psy2386         198 KKEIDLHL--N--YIDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       198 ~~da~~~l--~--~adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      .+|+.++-  .  .+|||.+|++++.+-.-++++.+.
T Consensus       201 ~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~e~~~~  237 (239)
T d1vzwa1         201 LDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEA  237 (239)
T ss_dssp             HHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHHHhhhhCCccEeeEhHHHHCCCCCHHHHHHh
Confidence            99999874  2  399999999999888777776553

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=1.1e-08  Score=88.98  Aligned_cols=147  Identities=13%  Similarity=0.242  Sum_probs=106.0

Q ss_pred             EEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe-----
Q psy2386          50 FQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR-----  122 (311)
Q Consensus        50 ~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-----  122 (311)
                      +|++|.  +.++    ++.+-+.|+|-|-+|              +++.++|.++.++.+ ....  +.|++-++     
T Consensus        76 l~~gGGI~s~~~----~~~~~~~Ga~kVvi~--------------s~~~~~~~~~~~~~~-~~~~--~~v~iD~~~~~~~  134 (241)
T d1qo2a_          76 IQIGGGIRSLDY----AEKLRKLGYRRQIVS--------------SKVLEDPSFLKSLRE-IDVE--PVFSLDTRGGRVA  134 (241)
T ss_dssp             EEEESSCCSHHH----HHHHHHTTCCEEEEC--------------HHHHHCTTHHHHHHT-TTCE--EEEEEEEETTEEC
T ss_pred             hhhhhhhhhhhh----hhhccccccceEecC--------------cccccCchhhhhhcc-cccc--eeeeccccccccc
Confidence            577774  4443    345557899999876              566788887766433 2222  33444333     


Q ss_pred             -ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc--cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         123 -IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN--AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       123 -~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt--~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                       -||...... .+.++++.+++.|+..+.++.-.  .+.+|           .|++.++++.+.. ++||+++|||.|.+
T Consensus       135 ~~g~~~~~~~-~~~~~~~~~~~~g~~eii~~dId~dGt~~G-----------~d~~l~~~i~~~~-~~pvi~~GGv~s~~  201 (241)
T d1qo2a_         135 FKGWLAEEEI-DPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-----------HDFSLTKKIAIEA-EVKVLAAGGISSEN  201 (241)
T ss_dssp             CTTCSSCSCC-CHHHHHHHHHTTTCCEEEEEETTHHHHTCC-----------CCHHHHHHHHHHH-TCEEEEESSCCSHH
T ss_pred             ccCcccceee-ehhHHHHHhhccccceEEEeehhhhhhccc-----------cchhhhhhhhccC-CceEEEECCCCCHH
Confidence             245443322 46799999999999999998543  33444           4999999999886 79999999999999


Q ss_pred             HHHHHHh------h-cCEEEEehhhhhCCcchHHhHhh
Q psy2386         200 EIDLHLN------Y-IDGVMLGREAYKNPFLMSNFDLN  230 (311)
Q Consensus       200 da~~~l~------~-adgVmigRa~l~~P~i~~~~~~~  230 (311)
                      |+.++.+      . ++||.+|++++.+-.-+.++++.
T Consensus       202 di~~l~~ig~~~~~~~~gvivG~al~~g~l~~~~~k~~  239 (241)
T d1qo2a_         202 SLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKRY  239 (241)
T ss_dssp             HHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHHccccccCCEeeEEEHHHHHCCCCCHHHHHHH
Confidence            9999864      1 89999999998887777777654

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=1.6e-08  Score=90.43  Aligned_cols=162  Identities=13%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             CCCCCeEEEecCCCHHHH--HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          43 AEEHPIAFQVGDNEPKKL--AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~--~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      ..+.++.+|+....+...  ....+..+..+++.+.+|..||........      .......++...+. ..+.|+.+|
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~p~~~k  165 (310)
T d1vcfa1          93 APKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGD------TDFRGLVERLAELL-PLPFPVMVK  165 (310)
T ss_dssp             CSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSC------CCCTTHHHHHHHHC-SCSSCEEEE
T ss_pred             cCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccc------cccccHHHHHHHHh-hccCCceee
Confidence            346788899987654332  223333445678999999998865433221      11112223333333 358899999


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--c-----ccc---CCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA--F-----LKK---LNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--~-----~~G---~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      .-.+...       .+.++.+.++|++.|.|.++-.  .     ..+   .....-...+..-.+.+.++++..+++|||
T Consensus       166 ~v~~~~~-------~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii  238 (310)
T d1vcfa1         166 EVGHGLS-------REAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLV  238 (310)
T ss_dssp             CSSSCCC-------HHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEE
T ss_pred             eecCccc-------HHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEE
Confidence            6543222       4667889999999999854321  0     001   000000011112235566676666689999


Q ss_pred             EecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         191 INGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       191 ~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      +.|||++..|+.++|.. ||+||+||+++
T Consensus       239 ~dGGIr~g~Dv~KALalGAdaV~iGr~~l  267 (310)
T d1vcfa1         239 ASGGVYTGTDGAKALALGADLLAVARPLL  267 (310)
T ss_dssp             EESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred             eCCCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence            99999999999999987 99999999875

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=5.9e-07  Score=81.85  Aligned_cols=156  Identities=11%  Similarity=0.147  Sum_probs=104.7

Q ss_pred             CCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccC----cc----------------------cCccc
Q psy2386          44 EEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNG----FF----------------------GAILM   96 (311)
Q Consensus        44 ~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~----~~----------------------G~~Ll   96 (311)
                      .+.+...|+.-. +.+...+..++++.+|+..+-+....|..-.+..    ++                      ...-.
T Consensus       120 ~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~a~~~tvd~~~~~~~~~d~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T d1tb3a1         120 PEGFRWFQLYMKSDWDFNKQMVQRAEALGFKALVITIDTPVLGNRRRDKRNQLNLEANILLKDLRALKEEKPTQSVPVSF  199 (349)
T ss_dssp             TTCCEEEECCCCSCTTHHHHHHHHHHHHTCCCEEEECSCSSCCCCHHHHHTTCCCCC----CCSCCCCC-----------
T ss_pred             cCCCeeeeeecccCHHHHHHHHHHHHhcCCcccccccCchhhcchhhhhhccccCCcccchhhhhhhhhccccccccccc
Confidence            467888999754 5556667777888899998887765553211100    00                      00000


Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~~  174 (311)
                      .++...-+-+..+++..+.|+.+|--.+          .+-+..+.++|++.+.|.  |.+.. .+         .+.-.
T Consensus       200 ~~~~~~~~~i~~l~~~~~~pii~Kgi~~----------~~da~~a~~~G~d~i~vsnhggr~~-d~---------~~~~~  259 (349)
T d1tb3a1         200 PKASFCWNDLSLLQSITRLPIILKGILT----------KEDAELAMKHNVQGIVVSNHGGRQL-DE---------VSASI  259 (349)
T ss_dssp             --CCCCHHHHHHHHTTCCSCEEEEEECS----------HHHHHHHHHTTCSEEEECCGGGTSS-CS---------BCCHH
T ss_pred             cCCCCCHHHHHHHHHhcCCCcccchhhh----------hHHHHHHHHhhccceeeeccccccc-cc---------cccch
Confidence            1111223557778888899999995542          345677889999999985  33321 11         12345


Q ss_pred             HHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         175 NFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       175 ~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      +.+.++++.++ ++|||+.|||++..|+.+.|.. ||+|+|||+++.
T Consensus       260 ~~l~~i~~~~~~~~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~  306 (349)
T d1tb3a1         260 DALREVVAAVKGKIEVYMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (349)
T ss_dssp             HHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             hhcceeeeccCCCeeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence            66777776553 5999999999999999999987 999999999864

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.58  E-value=1.4e-06  Score=76.42  Aligned_cols=188  Identities=13%  Similarity=0.130  Sum_probs=112.7

Q ss_pred             eEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhccc-cce
Q psy2386          48 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDSV-EID  116 (311)
Q Consensus        48 ~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~~-~~p  116 (311)
                      +|.=+.+.  |.+...++++.+.+.|+|.|||.+  |...-..+|-      --+|-  -+++.+.++++.+++.. ++|
T Consensus        19 li~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGi--PfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~p   96 (267)
T d1qopa_          19 FVPFVTLGDPGIEQSLKIIDTLIDAGADALELGV--PFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIP   96 (267)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEEC--CCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSC
T ss_pred             EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECC--CCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccc
Confidence            55555444  567788999989999999999963  3322211110      00111  25677888888888764 688


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE-------------------------ecC-cc--------------
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV-------------------------HAR-NA--------------  156 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv-------------------------h~R-t~--------------  156 (311)
                      +.+=.-......-.   ..+|++.+.++|++.+.+                         -.- |.              
T Consensus        97 ivlm~Y~N~i~~~G---~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gF  173 (267)
T d1qopa_          97 IGLLMYANLVFNNG---IDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGY  173 (267)
T ss_dssp             EEEEECHHHHHTTC---HHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSC
T ss_pred             eEEEeeccchhhcC---chHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchh
Confidence            75532110000000   235556666666666553                         111 10              


Q ss_pred             ----ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         157 ----FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       157 ----~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                          ...|.+|.... ...---+.+.++++.. ++||+..-||.|++|+.+.+.. ||||+||+++..      .+.+. 
T Consensus       174 iY~vs~~GvTG~~~~-~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk------~i~~~-  244 (267)
T d1qopa_         174 TYLLSRSGVTGAENR-GALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVK------IIEKN-  244 (267)
T ss_dssp             EEEESSSSCCCSSSC-C--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHH------HHHHT-
T ss_pred             hhhhcccccCCcccc-cchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCEEEECHHHHH------HHHhc-
Confidence                01233443211 1112357899999987 8999999999999999988876 999999999854      33321 


Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHH
Q psy2386         232 YSNLPQYKIPTRIDIINRMILYIRQQ  257 (311)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
                              ..+..+.++.+.+|+..+
T Consensus       245 --------~~~~~~~~~~i~~~v~~l  262 (267)
T d1qopa_         245 --------LASPKQMLAELRSFVSAM  262 (267)
T ss_dssp             --------TTCHHHHHHHHHHHHHHH
T ss_pred             --------ccCHHHHHHHHHHHHHHH
Confidence                    234566677777776654

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.52  E-value=9.9e-07  Score=74.75  Aligned_cols=143  Identities=21%  Similarity=0.260  Sum_probs=92.2

Q ss_pred             HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHH
Q psy2386          62 KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTV  141 (311)
Q Consensus        62 ~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l  141 (311)
                      +-|++++++|.-.|----.-|.. +++.| |-+=|.||+.+.+|.++    +++||..|.|+|-        +. =++.|
T Consensus        12 eqA~iAe~aGAvaVmaLervpad-iR~~G-GvaRm~dp~~i~ei~~~----vsipvmak~righ--------~~-eaqiL   76 (254)
T d1znna1          12 EQAKIAEAAGAVAVMALERVPAD-IRAAG-GVARMADPTVIEEVMNA----VSIPVMAKVRIGH--------YV-EARVL   76 (254)
T ss_dssp             HHHHHHHHHTCSEEEECC----------C-CCCCCCCHHHHHHHHHH----CSSCEEEEEETTC--------HH-HHHHH
T ss_pred             HHHHHhhccCceeEeeeccCCHH-HHhcC-CcccCCCHHHHHHHHHh----cccccccccCCCc--------hH-HHHhH
Confidence            34678889997766443345655 34443 77889999998888776    6899999999973        12 26778


Q ss_pred             HHcCCCEEEE------------------------ecCcc--------------ccccCCCCcCC----------------
Q psy2386         142 SSAGCRTFIV------------------------HARNA--------------FLKKLNPKQNR----------------  167 (311)
Q Consensus       142 ~~~G~~~itv------------------------h~Rt~--------------~~~G~~g~~~~----------------  167 (311)
                      ++.|+|++.-                        ..|+-              ..+|+.|..+-                
T Consensus        77 e~~~vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~  156 (254)
T d1znna1          77 EALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRK  156 (254)
T ss_dssp             HHHTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             HhhCCCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHH
Confidence            8888888751                        11210              01232221110                


Q ss_pred             -------------CCCcCcHHHHHHHHHh--CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         168 -------------KIPILKYNFVYNLKKD--FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       168 -------------~~~~~~~~~i~~i~~~--~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                                   ..-.+.++++.++++.  + .+|+++-|||.||.|+..+++. ||||.+|+|...-
T Consensus       157 ~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l-~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s  224 (254)
T d1znna1         157 VVNMSEDELVAEAKQLGAPVEVLREIKRLGRL-PVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKS  224 (254)
T ss_dssp             HHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSC-SSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGS
T ss_pred             HHcCCHHHHHHHHHhhCCchHHHHHHHHhCCC-CceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcC
Confidence                         0001235667777753  4 5899999999999999999987 9999999998553

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.51  E-value=6.6e-06  Score=71.71  Aligned_cols=192  Identities=12%  Similarity=0.174  Sum_probs=121.0

Q ss_pred             eEEEecCC--CHHHHHHHHHHHHHcCCCEEEec--cCCCccc--cccCcccCccc--CChHHHHHHHHHHhccccceeEE
Q psy2386          48 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLN--CGCPSNR--VQNGFFGAILM--TKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        48 ~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN--~gCP~~~--v~~~~~G~~Ll--~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      +|.=+.+.  |.+.+.++++.+.+.|+|.|||.  ++-|..-  +.+.-.--+|-  -+.+.+.++++.+++..+.|+.+
T Consensus        19 li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il   98 (261)
T d1rd5a_          19 FIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVL   98 (261)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEE
T ss_pred             EEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceee
Confidence            55555544  56889999999999999999997  4556321  00000001111  35688889999999888888754


Q ss_pred             EEe--------------ccCC----CCCcHHHHHHHHHHHHHcCCCEEEEecC-cc------------------ccccCC
Q psy2386         120 KHR--------------IGID----DINSYDFVRDFVGTVSSAGCRTFIVHAR-NA------------------FLKKLN  162 (311)
Q Consensus       120 KiR--------------~g~~----~~~~~~~~~e~~~~l~~~G~~~itvh~R-t~------------------~~~G~~  162 (311)
                      =.-              .|.+    .+-.+++..++...+.+.|.+.|-+-.- |.                  ...|.+
T Consensus        99 m~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvT  178 (261)
T d1rd5a_          99 LSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVT  178 (261)
T ss_dssp             ECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCB
T ss_pred             eeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCcc
Confidence            211              1111    1112334567778888888887765322 11                  012434


Q ss_pred             CCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCC
Q psy2386         163 PKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIP  241 (311)
Q Consensus       163 g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~  241 (311)
                      |.... .....-+.++++++.. ++||+..-||.|++|++++.+. ||||.||++++.      .+.+          ..
T Consensus       179 G~~~~-~~~~~~~~i~~ik~~t-~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~------~i~~----------~~  240 (261)
T d1rd5a_         179 GPRAN-VNPRVESLIQEVKKVT-NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVR------QLGE----------AA  240 (261)
T ss_dssp             CTTSC-BCTHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH------HHHS----------SS
T ss_pred             ccccc-chhHHHHHHHHhhhcc-CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHH------HHHH----------cC
Confidence            43221 1111246899999987 8999999999999999999996 999999999843      3321          13


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2386         242 TRIDIINRMILYIRQQ  257 (311)
Q Consensus       242 ~~~~~~~~~~~~~~~~  257 (311)
                      +..+.++.+.+|+..+
T Consensus       241 ~~~~~~~~~~~~~~~l  256 (261)
T d1rd5a_         241 SPKQGLRRLEEYARGM  256 (261)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            3455666666666543

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.28  E-value=2e-06  Score=74.49  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=97.2

Q ss_pred             eEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcccccee
Q psy2386          48 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        48 ~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      ++.=+...  |.+...+.++.+. .|+|.|||.  =|...-.-+|-      --+|-  -+.+.+.++++.+|+..++|+
T Consensus         7 li~y~taG~P~~~~s~~~l~~l~-~g~d~iEiG--iPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pi   83 (248)
T d1geqa_           7 LIPYLTAGDPDKQSTLNFLLALD-EYAGAIELG--IPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPI   83 (248)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHG-GGBSCEEEE--CCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCE
T ss_pred             eEEEEcCcCCCHHHHHHHHHHHH-cCCCEEEEC--CCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcE
Confidence            44444444  4577888887775 499999995  45433222210      01111  256888899999999888887


Q ss_pred             EEEEe------cc------------CC----CCCcHHHHHHHHHHHHHcCCCEEEEecCcc-------------------
Q psy2386         118 TVKHR------IG------------ID----DINSYDFVRDFVGTVSSAGCRTFIVHARNA-------------------  156 (311)
Q Consensus       118 svKiR------~g------------~~----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-------------------  156 (311)
                      .+=.-      .|            .+    .+-..++..++...+.+.|.+.|.+-.-|.                   
T Consensus        84 vlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~v  163 (248)
T d1geqa_          84 VLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLV  163 (248)
T ss_dssp             EEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEE
T ss_pred             EEEeccccccccCHHHHhhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEE
Confidence            54221      11            10    011122334455555555555554322210                   


Q ss_pred             ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         157 FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       157 ~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      ...|.+|... ..+..--+.+.++++.. ++||...-||+|++|+.+++.. ||||.||++++
T Consensus       164 s~~GvTG~~~-~~~~~~~~~v~~vk~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv  224 (248)
T d1geqa_         164 SLYGTTGARE-EIPKTAYDLLRRAKRIC-RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALV  224 (248)
T ss_dssp             CCC--------CCCHHHHHHHHHHHHHC-SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             ecccccccch-hhhhhHHHHHHHHhhhc-ccceeeecccCCHHHHHHHHhcCCCEEEECHHHH
Confidence            0123344211 11111247899999987 8999999999999999999876 99999999985

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=1e-05  Score=67.79  Aligned_cols=150  Identities=15%  Similarity=0.197  Sum_probs=97.5

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccc-----cc--c-C--cccCcccCChHHHHHHHHHHhccccc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR-----VQ--N-G--FFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~-----v~--~-~--~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      .|++.=|.+.++++....++.+.+.|++.|||.+-+|...     .+  + .  ..|+.-..+++.+.+.+++     +.
T Consensus         9 ~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~a-----Ga   83 (202)
T d1wa3a1           9 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVES-----GA   83 (202)
T ss_dssp             HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHH-----TC
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhh-----cc
Confidence            5788889999999999999999999999999999888651     11  1 1  1344444566666555444     22


Q ss_pred             eeEEEEeccCCCCC-------------cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         116 DITVKHRIGIDDIN-------------SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       116 pvsvKiR~g~~~~~-------------~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      .+.|  .++++.+-             .....-| +....++|++.+.+++-..  .|             -.+++.++.
T Consensus        84 ~fiv--sP~~~~~v~~~~~~~~i~~iPGv~TpsE-i~~A~~~G~~~lK~fPa~~--~G-------------~~~lk~l~~  145 (202)
T d1wa3a1          84 EFIV--SPHLDEEISQFCKEKGVFYMPGVMTPTE-LVKAMKLGHTILKLFPGEV--VG-------------PQFVKAMKG  145 (202)
T ss_dssp             SEEE--CSSCCHHHHHHHHHHTCEEECEECSHHH-HHHHHHTTCCEEEETTHHH--HH-------------HHHHHHHHT
T ss_pred             cEEe--CCCCcHHHHHHHHhcCCceeCCcCcHHH-HHHHHHCCCCEEEecchhh--cC-------------HHHHHHHhC
Confidence            2222  33332100             0000111 1222355666665554321  11             257888888


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      -+|++|++..||| |.+++.++++. +.+|.+|+.++.
T Consensus       146 p~p~i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~~  182 (202)
T d1wa3a1         146 PFPNVKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALVK  182 (202)
T ss_dssp             TCTTCEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHHC
T ss_pred             cccCCcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhcC
Confidence            8889999999999 78999999987 999999988764

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.22  E-value=1.3e-05  Score=68.29  Aligned_cols=144  Identities=14%  Similarity=0.085  Sum_probs=96.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      ..+.-..-++.+.+.|+|.||+=+  |        +|...-.+.+.+.+-++++++.+ +.++.|-+-.+.-.+   ++.
T Consensus        68 ~~~~K~~E~~~Ai~~GAdEID~Vi--n--------~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~---~ei  134 (225)
T d1mzha_          68 KTSVKVKEAVEAVRDGAQELDIVW--N--------LSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNE---EEI  134 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEEC--C--------HHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCH---HHH
T ss_pred             cHHHHHHHHHHHHHcCCCeEEEee--c--------hhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCH---HHH
Confidence            444444445667778999999853  1        33333356778888788887776 445444444443322   356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ...++.+.++|+|+|.-.      .|+.+.      .+..+.++.+++.++ ++.|=++|||+|.+++.++++. |+-+.
T Consensus       135 ~~a~~~a~~aGadfiKTS------TG~~~~------gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~~Ga~RiG  202 (225)
T d1mzha_         135 KKAVEICIEAGADFIKTS------TGFAPR------GTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRIG  202 (225)
T ss_dssp             HHHHHHHHHHTCSEEECC------CSCSSS------CCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcccceEeec------CCCCCC------CCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHhchhhee
Confidence            788888999999999643      233211      245566776666553 5899999999999999999986 99766


Q ss_pred             EehhhhhCCcchHHhH
Q psy2386         213 LGREAYKNPFLMSNFD  228 (311)
Q Consensus       213 igRa~l~~P~i~~~~~  228 (311)
                      ..+++    .+++++.
T Consensus       203 tSs~~----~i~~e~~  214 (225)
T d1mzha_         203 TSSGI----SIAEEFL  214 (225)
T ss_dssp             ESCHH----HHHHHHH
T ss_pred             cCcHH----HHHHHHH
Confidence            65553    3555554

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=1.2e-05  Score=67.68  Aligned_cols=136  Identities=15%  Similarity=0.120  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe--ccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR--IGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR--~g~~~~~~~~  132 (311)
                      .+.+.-..-++.+.+.|+|.||+=+          .+|..+-.+.+.+.+-+.++++.++- ..+|+=  .+.-+   .+
T Consensus        67 ~~~~~k~~e~~~ai~~GA~EiD~V~----------n~~~~~~g~~~~v~~ei~~v~~~~~~-~~lKVIlEt~~L~---~~  132 (211)
T d1ub3a_          67 QEKEVKALEAALACARGADEVDMVL----------HLGRAKAGDLDYLEAEVRAVREAVPQ-AVLKVILETGYFS---PE  132 (211)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHSTT-SEEEEECCGGGSC---HH
T ss_pred             CcHHHHHHHHHHHHHcCCCeEEEee----------ccchhhcCCHHHHHHHHHHHHHhccC-CceEEEeccccCC---HH
Confidence            3455555556677788999999842          14555556889999889999887742 334543  33222   23


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adg  210 (311)
                      +....++.+.++|+|+|.-.      .|+.+      +.+..+.++.+++.++ ++.|=++|||+|.+++.++++. |+-
T Consensus       133 ei~~a~~~a~~aGadfiKTS------TG~~~------~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~l~aGa~r  200 (211)
T d1ub3a_         133 EIARLAEAAIRGGADFLKTS------TGFGP------RGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASR  200 (211)
T ss_dssp             HHHHHHHHHHHHTCSEEECC------CSSSS------CCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHhccceEEec------CCCCC------CCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHHHhhhH
Confidence            57788889999999999543      23321      1245666666666553 5889999999999999999986 886


Q ss_pred             EEEehh
Q psy2386         211 VMLGRE  216 (311)
Q Consensus       211 VmigRa  216 (311)
                      +-..+|
T Consensus       201 iGtSs~  206 (211)
T d1ub3a_         201 LGTSSG  206 (211)
T ss_dssp             EEETTH
T ss_pred             hccCcH
Confidence            655444

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=4.7e-05  Score=70.49  Aligned_cols=155  Identities=17%  Similarity=0.173  Sum_probs=100.7

Q ss_pred             CCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCcccc-------------------------ccCcccCcc--c
Q psy2386          45 EHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRV-------------------------QNGFFGAIL--M   96 (311)
Q Consensus        45 ~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v-------------------------~~~~~G~~L--l   96 (311)
                      ..+...|+.-. +........++++..|++.+-++.-.|..-.                         ...+.+..+  .
T Consensus       149 ~~~~~~q~y~~~~~~~~~~l~~ra~~ag~~al~~tvD~~~~g~re~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  228 (414)
T d1kbia1         149 KQIQWYQLYVNSDRKITDDLVKNVEKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKF  228 (414)
T ss_dssp             SCCEEEEECCCSSHHHHHHHHHHHHHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTT
T ss_pred             ccchhhcccccccHHHHHHHHHHHHHcCCcccccccccccccccHHHHHhcccccccchhhhhcccccccccHHHHHHHh
Confidence            45677888754 6677777778888999998887766653210                         011111111  1


Q ss_pred             CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec--CccccccCCCCcCCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA--RNAFLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~--Rt~~~~G~~g~~~~~~~~~~~  174 (311)
                      -++.+.-+.++.++...+.|+.+|--..          .+-+..+.+.|++.+.+..  +.. ..+        .+...|
T Consensus       229 ~~~~l~~~~i~~i~~~~~~~~i~kgi~~----------~~da~~~~~~G~~~i~vsnhggr~-~d~--------~~~~~~  289 (414)
T d1kbia1         229 IDPSLTWKDIEELKKKTKLPIVIKGVQR----------TEDVIKAAEIGVSGVVLSNHGGRQ-LDF--------SRAPIE  289 (414)
T ss_dssp             BCTTCCHHHHHHHHHHCSSCEEEEEECS----------HHHHHHHHHTTCSEEEECCTTTTS-STT--------CCCHHH
T ss_pred             cccCCCHHHHHHHhccCCceEEeeccch----------hHHHHHHHhcCCcceeeccccccc-ccc--------cccccc
Confidence            1222333567788888899999995431          3446678899999998853  322 111        111233


Q ss_pred             HHHHHHHH------hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         175 NFVYNLKK------DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       175 ~~i~~i~~------~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      . +.++..      ..+++|||+.|||++.-|+.+.|.. ||+|+|||.++.
T Consensus       290 ~-l~~i~~~~~~~~v~~~~~viadGGIR~G~DVaKALALGAdaVgigrp~L~  340 (414)
T d1kbia1         290 V-LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLY  340 (414)
T ss_dssp             H-HHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             c-hhhhhhhhhhhccCCceeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            3 333322      1246999999999999999999987 999999999864

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=2.2e-06  Score=74.47  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      +..++++.+.+.|++.+++-.-.+...+         .+.+++.+.++.+.. ++|+...|||+|.+++++++.. ||-|
T Consensus        31 dP~~~a~~~~~~g~dei~ivDld~~~~~---------~~~~~~~i~~i~~~~-~~pi~vgGGIr~~e~i~~~l~~Ga~kv  100 (253)
T d1thfd_          31 DPVELGKFYSEIGIDELVFLDITASVEK---------RKTMLELVEKVAEQI-DIPFTVGGGIHDFETASELILRGADKV  100 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEESSCSSSH---------HHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHHHcCCCEEEEEeecccccC---------cccHHHHHHHHHhcc-CccceeecccccchhhhhHHhcCCCEE
Confidence            3579999999999999998543321111         124788999999987 8999999999999999999987 9999


Q ss_pred             EEehhhhhCCcchHHhHhhh
Q psy2386         212 MLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~~~  231 (311)
                      .+|+.++.||.++.++.+.+
T Consensus       101 iigs~~~~n~~~l~~~~~~~  120 (253)
T d1thfd_         101 SINTAAVENPSLITQIAQTF  120 (253)
T ss_dssp             EESHHHHHCTHHHHHHHHHH
T ss_pred             EEChHHhhChHHHHHHHHHc
Confidence            99999999999999987654

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.14  E-value=2.8e-06  Score=73.81  Aligned_cols=88  Identities=13%  Similarity=0.213  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+++.|++.+++-.-.+...+         .+.+++.++++.+.+ ++|+...|||+|.+++++++.. ||-|.
T Consensus        34 P~~~a~~~~~~gadei~ivDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~~gGGIr~~e~~~~ll~~G~~kVi  103 (252)
T d1h5ya_          34 PVEMAVRYEEEGADEIAILDITAAPEG---------RATFIDSVKRVAEAV-SIPVLVGGGVRSLEDATTLFRAGADKVS  103 (252)
T ss_dssp             HHHHHHHHHHTTCSCEEEEECCCCTTT---------HHHHHHHHHHHHHHC-SSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEeccccccc---------cccHHHHHHHHHhhc-CCcceeecccchhhhhhhHhhcCCcEEE
Confidence            578999999999999988755432111         124788999999987 8999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|+.++.||.++.++.+.+
T Consensus       104 i~s~~~~~~~~~~~~~~~~  122 (252)
T d1h5ya_         104 VNTAAVRNPQLVALLAREF  122 (252)
T ss_dssp             ESHHHHHCTHHHHHHHHHH
T ss_pred             ecccccCCcchHHHHHHhc
Confidence            9999999999999987654

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.13  E-value=2.9e-05  Score=70.05  Aligned_cols=154  Identities=15%  Similarity=0.166  Sum_probs=102.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccc----------------cCc--------------cc--
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----------------NGF--------------FG--   92 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----------------~~~--------------~G--   92 (311)
                      ..+...|..-.++.......+.++..|++.+.++..-|..-.+                ...              ..  
T Consensus       120 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~vd~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (353)
T d1p4ca_         120 DGDLWFQLYVIHREIAQGMVLKALHTGYTTLVLTTDVAVNGYRERDLHNRFKIPPFLTLKNFEGIDLGKMDKANLEMQAA  199 (353)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHHTCCCCTTCCCGGGTTCCCSCCSSTTTTTHHH
T ss_pred             CCceeeeeccccHHHHHHhHHHHHHcCCcceeeeccccccCcchhhhhhhhcccchhhhhhhhhhccccccccccchhHH
Confidence            3566777777788888777888888999999887654321000                000              00  


Q ss_pred             -CcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCC
Q psy2386          93 -AILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKI  169 (311)
Q Consensus        93 -~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~  169 (311)
                       ..-.-++....+-++.+++..+.|+.+|--.+          .+-+..+.+.|++.+.+.  +... ..+         
T Consensus       200 ~~~~~~~~~~~~~~i~~l~~~~~~~i~~kgv~~----------~~~~~~a~~~g~~~~~~s~~gg~~-~~~---------  259 (353)
T d1p4ca_         200 LMSRQMDASFNWEALRWLRDLWPHKLLVKGLLS----------AEDADRCIAEGADGVILSNHGGRQ-LDC---------  259 (353)
T ss_dssp             HTSSCCCTTCCHHHHHHHHHHCCSEEEEEEECC----------HHHHHHHHHTTCSEEEECCGGGTS-CTT---------
T ss_pred             HHHhccCCCCCHHHHHHHHhccccchhhhcchh----------hhhHHHHHhcCCchhhhccccccc-ccc---------
Confidence             00011223344556777777888998885543          345677789999998874  2221 111         


Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         170 PILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .+.-++.+.++.... ++|||+.|||++.-|+.+.|.. ||+|++||+++.
T Consensus       260 ~~~~~~~l~~i~~~~-~~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~  309 (353)
T d1p4ca_         260 AISPMEVLAQSVAKT-GKPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY  309 (353)
T ss_dssp             CCCGGGTHHHHHHHH-CSCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             cccchhcccchhccc-ccceeecCCcCchHHHHHHHHcCCCEEEEcHHHHH
Confidence            123455566777665 7999999999999999999987 999999999864

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=4.3e-06  Score=72.51  Aligned_cols=88  Identities=14%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-.-.+...+         ...+++.++++.+.+ .+|+...|||+|.+++++++.. |+-|.
T Consensus        32 P~~~a~~~~~~g~dei~iiDl~~~~~~---------~~~~~~~i~~i~~~~-~~pi~vgGGIrs~e~~~~ll~~Ga~kVi  101 (251)
T d1ka9f_          32 PVEAARAYDEAGADELVFLDISATHEE---------RAILLDVVARVAERV-FIPLTVGGGVRSLEDARKLLLSGADKVS  101 (251)
T ss_dssp             HHHHHHHHHHHTCSCEEEEECCSSTTC---------HHHHHHHHHHHHTTC-CSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHcCCCEEEEEeccccccc---------chhHHHHHHHHHhcc-CcchheeccccCHHHHHHHHHcCCCEEE
Confidence            578999999999999998754431111         124788999999988 7999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +|+.++.||.++.++.+.+
T Consensus       102 i~s~~~~n~~~i~~~~~~~  120 (251)
T d1ka9f_         102 VNSAAVRRPELIRELADHF  120 (251)
T ss_dssp             ECHHHHHCTHHHHHHHHHH
T ss_pred             ECchhhhCHHHHHHHHHhh
Confidence            9999999999999887654

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.07  E-value=0.0001  Score=63.27  Aligned_cols=139  Identities=14%  Similarity=0.188  Sum_probs=98.5

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .|+...=|=-||-+..+|.    .+|+|+|=|.+++               -+.+.+.++++..++ .+.-+.|-+..  
T Consensus       104 ~PiLrKDFIid~~QI~ea~----~~GADaiLLI~~~---------------L~~~~l~~l~~~a~~-lgl~~LvEvh~--  161 (247)
T d1a53a_         104 IPILMKDFIVKESQIDDAY----NLGADTVLLIVKI---------------LTERELESLLEYARS-YGMEPLIEIND--  161 (247)
T ss_dssp             SCEEEESCCCSHHHHHHHH----HHTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCCCEEEECS--
T ss_pred             cceeecccccChHHHHHHH----Hhhcchhhhhhhh---------------ccHHHHHHHHHHHHH-HhhhHHhhcCC--
Confidence            3444333334444443333    4788998887432               245677888877666 57777776553  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~  204 (311)
                               .+=+++..+.|++.|-|..|.-  ..+         ..|.+...++...+| +..+|+-+||.|++|+.++
T Consensus       162 ---------~~El~~a~~~~a~iIGINnRnL--~t~---------~vd~~~~~~L~~~ip~~~~~IaESGI~t~~dv~~l  221 (247)
T d1a53a_         162 ---------ENDLDIALRIGARFIGINSRDL--ETL---------EINKENQRKLISMIPSNVVKVAESGISERNEIEEL  221 (247)
T ss_dssp             ---------HHHHHHHHHTTCSEEEEESBCT--TTC---------CBCHHHHHHHHHHSCTTSEEEEESCCCCHHHHHHH
T ss_pred             ---------HHHHHHHHhCCCCeEeeeccCh--hhh---------hhhhhHHHHHHhhCCCCCeEEEecCCCCHHHHHHH
Confidence                     1224566789999999998873  222         267888888888876 5899999999999999999


Q ss_pred             Hhh-cCEEEEehhhhhCCcchHH
Q psy2386         205 LNY-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       205 l~~-adgVmigRa~l~~P~i~~~  226 (311)
                      .+. +|||.||.+++.+|...++
T Consensus       222 ~~~G~davLIGeaLmk~~d~~ke  244 (247)
T d1a53a_         222 RKLGVNAFLIGSSLMRNPEKIKE  244 (247)
T ss_dssp             HHTTCCEEEECHHHHHCTTHHHH
T ss_pred             HHCCCCEEEECHHHcCCCchhhH
Confidence            876 9999999999999975443

>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Putative dehydratase protein STM2273
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.06  E-value=2e-05  Score=69.13  Aligned_cols=155  Identities=15%  Similarity=0.083  Sum_probs=113.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccc--------cccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNR--------VQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI  123 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~--------v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~  123 (311)
                      ..+|+++++.|+.+.+.||+.|-++.+.+...        ......|-..-++++.-.+.|+++|+.+  ++++.+-..-
T Consensus        24 ~~tPe~~~~~a~~~~~~Gf~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~v~aiRe~vG~~~~l~vDan~  103 (278)
T d2gl5a1          24 LVTPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHS  103 (278)
T ss_dssp             CCSHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEccccCCccccccccccccccccccccHHHHHHHHHHHHHHHHHhccccceeecccc
Confidence            46899999999999999999999987764322        1111122223345667778889999988  4666676666


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+.    ++.+++++.|++.++.++-               + ..++-|++..+++++.. ++||.+.-.+.+.+++.+
T Consensus       104 ~~~~----~~Ai~~~~~L~~~~l~wiE---------------e-Pi~~~d~~~~~~L~~~~-~ipIa~gE~~~~~~~~~~  162 (278)
T d2gl5a1         104 LLGT----NSAIQFAKAIEKYRIFLYE---------------E-PIHPLNSDNMQKVSRST-TIPIATGERSYTRWGYRE  162 (278)
T ss_dssp             CSCH----HHHHHHHHHHGGGCEEEEE---------------C-SSCSSCHHHHHHHHHHC-SSCEEECTTCCTTHHHHH
T ss_pred             cccc----hhhHHHHHHhcccccceec---------------c-cccccchhhhhhhcccc-ccceecccccCChHHHhh
Confidence            6653    3568999999999877761               1 12234888899999998 799999889999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++.  +|.+++--+-.+...-+.++.+
T Consensus       163 ~i~~~a~di~~~d~~~~GGit~~~kia~  190 (278)
T d2gl5a1         163 LLEKQSIAVAQPDLCLCGGITEGKKICD  190 (278)
T ss_dssp             HHHTTCCSEECCCTTTTTHHHHHHHHHH
T ss_pred             hhccccceeEeeccccccchhhHHHhhh
Confidence            9976  9999987655555554555554

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.2e-05  Score=69.54  Aligned_cols=140  Identities=14%  Similarity=0.234  Sum_probs=91.4

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      .++.+.+ |-+|+.+..+. .+.+.|+|.|-|-.+-               -+++.+.+.++.+++.. ++||.+.-=. 
T Consensus        87 ~~v~~~v-gv~~~~~e~~~-~li~agvd~ivId~A~---------------G~~~~~~~~ik~ik~~~~~~~viaGnV~-  148 (330)
T d1vrda1          87 LLVGAAV-GTSPETMERVE-KLVKAGVDVIVIDTAH---------------GHSRRVIETLEMIKADYPDLPVVAGNVA-  148 (330)
T ss_dssp             BCCEEEE-CSSTTHHHHHH-HHHHTTCSEEEECCSC---------------CSSHHHHHHHHHHHHHCTTSCEEEEEEC-
T ss_pred             cEEEEEE-ecCHHHHHHHH-HHHHCCCCEEEEecCC---------------CCchhHHHHHHHHHHhCCCCCEEeechh-
Confidence            3455555 55666665544 4456788876664221               13455667777777654 6787775322 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecC------ccccccCCCCcCCCCCcCcHH---HHHHHHHhCCCCeEEEecCC
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHAR------NAFLKKLNPKQNRKIPILKYN---FVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~R------t~~~~G~~g~~~~~~~~~~~~---~i~~i~~~~~~ipvi~nGgI  195 (311)
                               +.+.++.|.++|+|.|.|--.      |+...|..        -..+.   .+.+.++.. ++|||+-|||
T Consensus       149 ---------t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~~~G~g--------~p~~sai~~~~~~~~~~-~vpvIAdGGi  210 (330)
T d1vrda1         149 ---------TPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVG--------VPQLTAVMECSEVARKY-DVPIIADGGI  210 (330)
T ss_dssp             ---------SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHHCCC--------CCHHHHHHHHHHHHHTT-TCCEEEESCC
T ss_pred             ---------HHHHHHHHHHcCCCEEeeccccCccccccceeccc--------cccchhHHHHHHHHHhc-CceEEecCCc
Confidence                     246788899999999988311      11111211        12333   344455666 7999999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      .+..|+.+.|.. ||+||+|+-+..-.
T Consensus       211 ~~~gdiakAla~GAd~Vm~Gs~fa~~~  237 (330)
T d1vrda1         211 RYSGDIVKALAAGAESVMVGSIFAGTE  237 (330)
T ss_dssp             CSHHHHHHHHHTTCSEEEESHHHHTBT
T ss_pred             ccCCchheeeeccCceeeecchheeec
Confidence            999999999987 99999999886643

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.05  E-value=0.00012  Score=66.26  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=102.6

Q ss_pred             CCCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccc----cCcccCc-----------ccC----------
Q psy2386          44 EEHPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQ----NGFFGAI-----------LMT----------   97 (311)
Q Consensus        44 ~~~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~----~~~~G~~-----------Ll~----------   97 (311)
                      .+.|...|+.-. +.......++.+..+|++.+-++...|....+    +.+....           ...          
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~~~~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (359)
T d1goxa_         120 GPGIRFFQLYVYKDRNVVAQLVRRAERAGFKAIALTVDTPRLGRREADIKNRFVLPPFLTLKNFEGIDLGKMDKANDSGL  199 (359)
T ss_dssp             CCCCEEEEECCBSSHHHHHHHHHHHHHTTCCEEEEECSCSSCCCCHHHHHTTCCCCTTCCCGGGSSSCCC---------H
T ss_pred             cCCCcccccccchhHHHHHHHHHHHHHhhcccccccccchhhhhhhhhccccccCCcccchhhhhhhccccCcccccccH
Confidence            346788999865 45666667778888999999888776543321    1000000           000          


Q ss_pred             --------ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCC
Q psy2386          98 --------KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNR  167 (311)
Q Consensus        98 --------~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~  167 (311)
                              ++....+-++.+++..+.|+.+|--.+          .+-+..+.+.|++.+.+.  +......+       
T Consensus       200 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~kg~~~----------~~da~~a~~~g~~~~~vsnhggr~ld~~-------  262 (359)
T d1goxa_         200 SSYVAGQIDRSLSWKDVAWLQTITSLPILVKGVIT----------AEDARLAVQHGAAGIIVSNHGARQLDYV-------  262 (359)
T ss_dssp             HHHHHHTBCTTCCHHHHHHHHHHCCSCEEEECCCS----------HHHHHHHHHTTCSEEEECCGGGTSSTTC-------
T ss_pred             HHHHHhhcCCCCCHHHHHHHHhhcccceeeecccc----------hHHHHHHHHccccceecccccccccccc-------
Confidence                    111112235666666678888884432          344677789999999884  33221111       


Q ss_pred             CCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         168 KIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       168 ~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~  220 (311)
                         +.-.+.+..+++.++ ++|||+.|||++.-|+.+.|.. ||+|.+||+++.-
T Consensus       263 ---~~~~~~l~~i~~~~~~~~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~  314 (359)
T d1goxa_         263 ---PATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFS  314 (359)
T ss_dssp             ---CCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             ---cchhhhchhhhhccCCccceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence               234466666666653 6999999999999999999987 9999999998753

>d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=97.99  E-value=0.0001  Score=63.04  Aligned_cols=148  Identities=11%  Similarity=0.124  Sum_probs=111.2

Q ss_pred             CCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEe
Q psy2386          46 HPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHR  122 (311)
Q Consensus        46 ~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR  122 (311)
                      .|+...+... +++.++++++.+.+.||+.+-+..|-.               +++.=.+.++++++.+  +..+.|-..
T Consensus         6 vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~---------------~~~~D~~~v~~ir~~~g~~~~l~vDaN   70 (244)
T d2chra1           6 IPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFR---------------SPQDDLIHMEALSNSLGSKAYLRVDVN   70 (244)
T ss_dssp             EEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSS---------------CHHHHHHHHHHHHHHTTTTSEEEEECT
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCC---------------CHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            4677777654 457788888989989999999965432               2333346677777777  567777777


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+..    +..++++.+++.++.++-               + ..++-|++..+++++.. ++||.+.-.+.|++++.
T Consensus        71 ~~~~~~----~A~~~~~~l~~~~i~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipia~~E~~~~~~~~~  129 (244)
T d2chra1          71 QAWDEQ----VASVYIPELEALGVELIE---------------Q-PVGRENTQALRRLSDNN-RVAIMADESLSTLASAF  129 (244)
T ss_dssp             TCCCTH----HHHHHHHHHHTTTCCEEE---------------C-CSCSSCHHHHHHHHHHC-SSEEEESSSCCSHHHHH
T ss_pred             CCcchH----HHHHHHHHHhhhhHHHHh---------------h-hhhhccchhhhhhccce-eeeeeecccccccchhh
Confidence            777653    568999999999987762               1 12234889999999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      ++++.  +|+|++--.-.+...-+.++.+
T Consensus       130 ~~i~~~~~d~v~~d~~~~GGit~~~~i~~  158 (244)
T d2chra1         130 DLARDRSVDVFSLKLCNMGGVSATQKIAA  158 (244)
T ss_dssp             HHHTTTCCSEECCCHHHHTSHHHHHHHHH
T ss_pred             hhhhcceeEEEeeccccccchHHHHHHHH
Confidence            99976  9999998777766665555544

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=0.00021  Score=60.51  Aligned_cols=143  Identities=13%  Similarity=0.158  Sum_probs=101.3

Q ss_pred             CCeEEEecC-CCHHHHHHHHHHHHHc-CCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          46 HPIAFQVGD-NEPKKLAKSAKIIQKW-GYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g-~~~~~~~~aa~~~~~~-g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      -.+..+=.| .+.++-.+.|+++.+. |-++|-|-       |..+  --.|+-|+....+-.+.+.+. +.-|..=+. 
T Consensus        65 ~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLE-------Vi~D--~~~L~PD~~etl~Aae~Lv~e-GF~VlpY~~-  133 (251)
T d1xm3a_          65 YTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVE-------VIGC--SRSLLPDPVETLKASEQLLEE-GFIVLPYTS-  133 (251)
T ss_dssp             SEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEEC-------CBCC--TTTCCBCHHHHHHHHHHHHHT-TCCEEEEEC-
T ss_pred             eEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEE-------EecC--CCCcCCCHHHHHHHHHHHHhC-CcEEEEecC-
Confidence            345666655 5789999999999886 34666664       1111  124777776666655555543 565655443 


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                          ++     .-++++|++.|+..|---|-.-  +  |     -.+..+...++.+.+.. ++|||.-+||-+++|+.+
T Consensus       134 ----~D-----~v~ak~Le~~Gc~avMPlgsPI--G--S-----g~Gl~n~~~l~~i~~~~-~vPvIvDAGIG~pSdAa~  194 (251)
T d1xm3a_         134 ----DD-----VVLARKLEELGVHAIMPGASPI--G--S-----GQGILNPLNLSFIIEQA-KVPVIVDAGIGSPKDAAY  194 (251)
T ss_dssp             ----SC-----HHHHHHHHHHTCSCBEECSSST--T--C-----CCCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHH
T ss_pred             ----CC-----HHHHHHHHHcCChhHHHhhhhh--h--c-----CCCcCChHHHHHHHhcC-CccEEEecCCCCHHHHHH
Confidence                12     3689999999999997654321  0  0     12345778899999886 899999999999999999


Q ss_pred             HHhh-cCEEEEehhhh
Q psy2386         204 HLNY-IDGVMLGREAY  218 (311)
Q Consensus       204 ~l~~-adgVmigRa~l  218 (311)
                      .++- ||+|++.++..
T Consensus       195 AMElG~daVLvNTAIA  210 (251)
T d1xm3a_         195 AMELGADGVLLNTAVS  210 (251)
T ss_dssp             HHHTTCSEEEESHHHH
T ss_pred             HHHccCCEEEechhhh
Confidence            9997 99999999874

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.94  E-value=1.4e-05  Score=68.53  Aligned_cols=87  Identities=13%  Similarity=0.161  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.|++-.-++.. +         ++.+++.++++.+.+ .+||...|||+|.+++.+++.. +|-|.
T Consensus        33 P~~~a~~~~~~ga~~l~i~DLd~~~-~---------~~~~~~~i~~i~~~~-~~pi~vGGGIrs~~~~~~ll~~Ga~kVv  101 (239)
T d1vzwa1          33 PLEAALAWQRSGAEWLHLVDLDAAF-G---------TGDNRALIAEVAQAM-DIKVELSGGIRDDDTLAAALATGCTRVN  101 (239)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEHHHHH-T---------SCCCHHHHHHHHHHC-SSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHHcCCCEEEEEeecccc-c---------ccchHHHHHHHHhhc-CcceEeecccccchhhhhhhccccccch
Confidence            5789999999999999986443311 1         124789999999998 7999999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHhhh
Q psy2386         213 LGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~~~  231 (311)
                      +++.++.||.++.++.+.+
T Consensus       102 i~s~~~~~~~~~~~~~~~~  120 (239)
T d1vzwa1         102 LGTAALETPEWVAKVIAEH  120 (239)
T ss_dssp             ECHHHHHCHHHHHHHHHHH
T ss_pred             hhHHhhhccccchhhhccC
Confidence            9999999999999887643

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=9.4e-05  Score=63.67  Aligned_cols=136  Identities=18%  Similarity=0.092  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      +.+.-..-++.+.+.|+|.||+=+          .+|...-.+.+.+.+=++++++.+ +.++.|=+-.+.-.+   ++.
T Consensus       101 ~~~~K~~Ea~~Ai~~GAdEID~Vi----------n~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~---~e~  167 (251)
T d1o0ya_         101 ETRTKAHEAIFAVESGADEIDMVI----------NVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDT---EEK  167 (251)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEC----------CHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH---HHH
T ss_pred             cHHHHHHHHHHHHHcCCceEEEEe----------ccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCc---HHH
Confidence            344444445667788999999842          134444567888888888888877 354444333332222   246


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ...++.+.++|+|+|.-..      |+.+      +.+..+.++.+++.++ ++.|=++|||+|++++.++++. ||-+-
T Consensus       168 ~~a~~ia~~aGadfvKTST------Gf~~------~gat~e~V~~m~~~~~~~~giKasGGIrt~~~a~~~i~aGa~riG  235 (251)
T d1o0ya_         168 IAACVISKLAGAHFVKTST------GFGT------GGATAEDVHLMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIG  235 (251)
T ss_dssp             HHHHHHHHHTTCSEEECCC------SSSS------CCCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHhCcceeeccC------CCCC------CCcCHHHHHHHHHHhCCCceEeccCCcCCHHHHHHHHHHhhHHhC
Confidence            6788888999999995432      2221      1245566666665443 5889999999999999999987 99754


Q ss_pred             Eehh
Q psy2386         213 LGRE  216 (311)
Q Consensus       213 igRa  216 (311)
                      ..++
T Consensus       236 tSs~  239 (251)
T d1o0ya_         236 TSSG  239 (251)
T ss_dssp             ESCH
T ss_pred             CCcH
Confidence            4433

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.91  E-value=8.1e-06  Score=73.22  Aligned_cols=86  Identities=14%  Similarity=0.086  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH-----------H
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-----------I  201 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d-----------a  201 (311)
                      +..+.++.+.+.|||.|++-.-++...|.      .....+++.|+++++.+ .+||.+.|||+|.+|           |
T Consensus        49 dP~~~a~~~~~~gaDeL~ivDidas~~~~------~~~~~~~~~I~~i~~~~-~vPi~vGGGIrsi~di~~~~~~~~e~A  121 (323)
T d1jvna1          49 KPVQLAQKYYQQGADEVTFLNITSFRDCP------LKDTPMLEVLKQAAKTV-FVPLTVGGGIKDIVDVDGTKIPALEVA  121 (323)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEEEC---CCC------GGGCHHHHHHHHHTTTC-CSCEEEESSCSCEECTTCCEECHHHHH
T ss_pred             CHHHHHHHHHHCCCCEEEEEECcCCCCCc------CCCchHHHHHHhhcccc-ceeEEEecCcccHHHhhhccchhhHHH
Confidence            46899999999999999975333211111      11124689999999988 899999999999655           6


Q ss_pred             HHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         202 DLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       202 ~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      .+++.. ||-|.||++++.||.++.
T Consensus       122 ~~ll~~GadKVvI~T~ai~~p~~~~  146 (323)
T d1jvna1         122 SLYFRSGADKVSIGTDAVYAAEKYY  146 (323)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHHHH
T ss_pred             HHHHHcCCCeEEechHHhhChHHHH
Confidence            788876 999999999986555443

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=1.8e-05  Score=69.02  Aligned_cols=162  Identities=12%  Similarity=0.142  Sum_probs=92.2

Q ss_pred             eEEEecCC--CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcc------cCccc--CChHHHHHHHHHHhcccccee
Q psy2386          48 IAFQVGDN--EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFF------GAILM--TKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        48 ~~~Ql~g~--~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~------G~~Ll--~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      +|.=+...  |.+.+.++++.+.+ |+|.|||.  =|...-..+|-      --+|-  -+.+.+.++++.+|+..++|+
T Consensus        18 li~yitaG~P~~~~~~~~l~~l~~-gaDiiElG--iPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pi   94 (271)
T d1ujpa_          18 LIPYLTAGFPSREGFLQAVEEVLP-YADLLEIG--LPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPL   94 (271)
T ss_dssp             EEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEE--CCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCE
T ss_pred             EEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeC--CCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcE
Confidence            55445444  56778888887765 99999995  44433222210      01121  267888899999998888887


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEE--------------------------ecCcc---------------
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIV--------------------------HARNA---------------  156 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itv--------------------------h~Rt~---------------  156 (311)
                      .+=.-..  .--.+ -...|++.+.++|++.+.+                          .+.|.               
T Consensus        95 vlm~Y~N--~i~~~-G~~~F~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFI  171 (271)
T d1ujpa_          95 FLMTYLN--PVLAW-GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV  171 (271)
T ss_dssp             EEECCHH--HHHHH-CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE
T ss_pred             EEEeech--hhhhC-CchhHhHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchh
Confidence            6532110  00000 0134455555555555542                          22211               


Q ss_pred             ---ccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhh
Q psy2386         157 ---FLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAY  218 (311)
Q Consensus       157 ---~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l  218 (311)
                         ...|.+|... ..+..--+.+.++++.. ++||...=||.+++|+... ..||||.||++++
T Consensus       172 Y~Vs~~GvTG~~~-~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs~~e~v~~~-~~ADGvIVGSAiV  233 (271)
T d1ujpa_         172 YAVSVTGVTGMRE-RLPEEVKDLVRRIKART-ALPVAVGFGVSGKATAAQA-AVADGVVVGSALV  233 (271)
T ss_dssp             EEECC-------------CCHHHHHHHHTTC-CSCEEEESCCCSHHHHHHH-TTSSEEEECHHHH
T ss_pred             hhhcccCccCccc-cchHHHHHHHHhhhccc-cCCeEEeCCCCCHHHHHHh-CCCCEEEEcHHHH
Confidence               0123344321 11222357899999876 8999988899999999764 5699999999984

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.91  E-value=0.00054  Score=58.24  Aligned_cols=141  Identities=9%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             eEEEecC-CCHHHHHHHHHHHHHcC--CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          48 IAFQVGD-NEPKKLAKSAKIIQKWG--YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        48 ~~~Ql~g-~~~~~~~~aa~~~~~~g--~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +..+-.| .++++-.++|+++.+.+  -+.|.|..       ..+  --.|+-|+-...+..+.+.+. +.-|..=+.. 
T Consensus        68 ~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEV-------i~d--~~~L~Pd~~etl~Aa~~Lv~e-gF~Vlpy~~~-  136 (243)
T d1wv2a_          68 ILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEV-------LAD--QKTLFPNVVETLKAAEQLVKD-GFDVMVYTSD-  136 (243)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECC-------BSC--TTTCCBCHHHHHHHHHHHHTT-TCEEEEEECS-
T ss_pred             ecccccccccHHHHHHHHHHHHHHhCCCceEEEee-------ecc--ccccCCcHHHHHHHHHHhhcC-ceEEEeccCC-
Confidence            4455555 47899999999999864  47888862       111  123677776666666665443 4455444331 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~  204 (311)
                          +     .-+++.+++.|+..+---+-.-   | ||     .+..+...++.+++.. ++|||.-+||.+++|+..+
T Consensus       137 ----D-----~v~ak~le~~Gc~~vMplgsPI---G-sg-----~Gi~n~~~l~~i~~~~-~vpvivdAGIg~psdaa~A  197 (243)
T d1wv2a_         137 ----D-----PIIARQLAEIGCIAVMPLAGLI---G-SG-----LGICNPYNLRIILEEA-KVPVLVDAGVGTASDAAIA  197 (243)
T ss_dssp             ----C-----HHHHHHHHHSCCSEEEECSSST---T-CC-----CCCSCHHHHHHHHHHC-SSCBEEESCCCSHHHHHHH
T ss_pred             ----C-----HHHHhHHHHcCceeeeeccccc---c-cc-----cccccHHHHHhccccC-CcceEeecccCCHHHHHHH
Confidence                2     3579999999999986543321   0 11     1335667788888875 8999999999999999999


Q ss_pred             Hhh-cCEEEEehhhh
Q psy2386         205 LNY-IDGVMLGREAY  218 (311)
Q Consensus       205 l~~-adgVmigRa~l  218 (311)
                      ++. ||||.+++|..
T Consensus       198 MElG~dgVLvnsaIa  212 (243)
T d1wv2a_         198 MELGCEAVLMNTAIA  212 (243)
T ss_dssp             HHHTCSEEEESHHHH
T ss_pred             HHccCCEEEechHhh
Confidence            997 99999999984

>d1rvka1 c.1.11.2 (A:127-381) Hypothetical protein Atu3453 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Atu3453
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.89  E-value=0.00023  Score=60.98  Aligned_cols=145  Identities=12%  Similarity=0.075  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++.|+.+.+.||..+-+..|.|...     .+    .+++.-.+.++++|+.+  ++.+.|-..-+|+.    +
T Consensus        22 ~tpe~~~~~a~~~~~~Gf~~~Kik~g~~~~~-----~~----~~~~~d~~~v~avR~~~G~~~~l~vDaN~~~~~----~   88 (255)
T d1rvka1          22 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVS-----WA----PDVKMDLKACAAVREAVGPDIRLMIDAFHWYSR----T   88 (255)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEECCCTTST-----TC----CCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCH----H
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCccc-----cc----cCHHHHHHHHHHHHHHcCCccceeccccccccc----c
Confidence            4799999999999888999999998876432     12    35666677788888876  45666666666653    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HHHHHHhh--cC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EIDLHLNY--ID  209 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da~~~l~~--ad  209 (311)
                      +..++++.+++.++.++-               + ..++-|++..+++++.. ++||.+...+.+.. +..++++.  +|
T Consensus        89 ~A~~~~~~l~~~~l~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pI~~~E~~~~~~~~~~~~i~~~~~d  151 (255)
T d1rvka1          89 DALALGRGLEKLGFDWIE---------------E-PMDEQSLSSYKWLSDNL-DIPVVGPESAAGKHWHRAEWIKAGACD  151 (255)
T ss_dssp             HHHHHHHHHHTTTCSEEE---------------C-CSCTTCHHHHHHHHHHC-SSCEEECSSCSSHHHHHHHHHHTTCCS
T ss_pred             hhhhhhhhcccchhhhhc---------------C-CcccccHHHHHHHHHhc-ccceeehhhcccchhhhhhhhhhchhh
Confidence            578999999999998882               1 12234788899999998 79999988998875 66778765  99


Q ss_pred             EEEEehhhhhCCcchHHhHh
Q psy2386         210 GVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       210 gVmigRa~l~~P~i~~~~~~  229 (311)
                      .+++--+-++...=..++.+
T Consensus       152 ii~~d~~~~GGit~~~~i~~  171 (255)
T d1rvka1         152 ILRTGVNDVGGITPALKTMH  171 (255)
T ss_dssp             EEEECHHHHTSHHHHHHHHH
T ss_pred             hccccccccccchHHHHHHH
Confidence            99998777766554444443

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.88  E-value=7.4e-05  Score=68.28  Aligned_cols=137  Identities=15%  Similarity=0.180  Sum_probs=89.9

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+.+ |..++....+ ..+.+.|+|.|-+...-+..               +.+.+.++.+++.. ++|+.+--=.   
T Consensus       110 v~aav-g~~~~~~~~~-~~l~~agv~vi~id~a~g~~---------------~~~~~~i~~ik~~~~~~~iIaGnVa---  169 (378)
T d1jr1a1         110 CGAAI-GTHEDDKYRL-DLLALAGVDVVVLDSSQGNS---------------IFQINMIKYMKEKYPNLQVIGGNVV---  169 (378)
T ss_dssp             CEEEE-CSSTHHHHHH-HHHHHHTCCEEEECCSSCCS---------------HHHHHHHHHHHHHSTTCEEEEEEEC---
T ss_pred             EEEEe-ccCHHHHHHH-HHHHhhccceEeeeccCccc---------------hhhHHHHHHHHHHCCCCceeecccc---
Confidence            44555 4444544443 45666799999987554432               45566777777654 5666543211   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCc------cccccCCCCcCCCCCcCcHHHH---HHHHHhCCCCeEEEecCCCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARN------AFLKKLNPKQNRKIPILKYNFV---YNLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt------~~~~G~~g~~~~~~~~~~~~~i---~~i~~~~~~ipvi~nGgI~s  197 (311)
                             +.+-++.|.++|+|.|.|-...      +...|.        +-..+..+   .+.++.. ++|||+-|||.+
T Consensus       170 -------T~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGv--------G~pq~sai~~~~~~a~~~-~vpIIADGGi~~  233 (378)
T d1jr1a1         170 -------TAAQAKNLIDAGVDALRVGMGCGSICITQEVLAC--------GRPQATAVYKVSEYARRF-GVPVIADGGIQN  233 (378)
T ss_dssp             -------SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCC--------CCCHHHHHHHHHHHHGGG-TCCEEEESCCCS
T ss_pred             -------cHHHHHHHHHhCCCEEeecccccccccccccccc--------CcccchhhhHHHHhhccc-CCceeccccccc
Confidence                   2467888999999999884321      111121        11234433   3444555 799999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhC
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKN  220 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~  220 (311)
                      .-|+.+.|.. ||+||+|+.+.+-
T Consensus       234 ~gdiakAla~GAd~VMmGs~fAgt  257 (378)
T d1jr1a1         234 VGHIAKALALGASTVMMGSLLAAT  257 (378)
T ss_dssp             HHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             CCceeeEEEeecceeeecceeeee
Confidence            9999999987 9999999988643

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=97.83  E-value=3.4e-05  Score=75.79  Aligned_cols=154  Identities=14%  Similarity=0.194  Sum_probs=99.3

Q ss_pred             CeEEEec----CCCHHHHHHHHHHHHHcCCCEEEeccCC----------Cccccc-------cCcccCcc--------cC
Q psy2386          47 PIAFQVG----DNEPKKLAKSAKIIQKWGYDEINLNCGC----------PSNRVQ-------NGFFGAIL--------MT   97 (311)
Q Consensus        47 p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~IdiN~gC----------P~~~v~-------~~~~G~~L--------l~   97 (311)
                      -.+.|+.    |-+++.+         ..++.|||-+|=          |..||.       .-.-|-.+        ..
T Consensus       483 ~~i~q~asgrfG~~~~~l---------~~~~~ieIK~~QGAKpG~GG~Lpg~KVt~~IA~~R~~~~G~~~iSP~~h~di~  553 (771)
T d1ea0a2         483 SAIKQVASGRFGVTAEYL---------NQCRELEIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIY  553 (771)
T ss_dssp             CSEEEECSSCTTCCHHHH---------TSCSEEEEECCCTTSTTTCCEECGGGCCHHHHHHHTCCTTCCEECCSSCTTCS
T ss_pred             cccceecCCcCCcCHHHh---------cccceeEEeeecccccccccccccccCCHHHHHhcCCCCCCCccCCCCCCCCC
Confidence            4789986    6667653         347999998761          322221       11112211        24


Q ss_pred             ChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc-CCCCCcCcHH
Q psy2386          98 KPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ-NRKIPILKYN  175 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~~  175 (311)
                      .++-+.+.|..+|+.. +.||+||+-.+..       ...++..+.++|+|+|+|.|..+. .|-++.. ..+.+. -|+
T Consensus       554 siedL~~~I~~Lr~~~~~~pv~vKl~~~~~-------~~~i~~~v~ka~~D~I~IdG~eGG-TGAap~~~~d~~Gl-P~~  624 (771)
T d1ea0a2         554 SIEDLAQLIYDLKQINPDAKVTVKLVSRSG-------IGTIAAGVAKANADIILISGNSGG-TGASPQTSIKFAGL-PWE  624 (771)
T ss_dssp             SHHHHHHHHHHHHHHCTTCEEEEEEECCTT-------HHHHHHHHHHTTCSEEEEECTTCC-CSSEETTHHHHSCC-CHH
T ss_pred             CHHHHHHHHHHHHhcCCCCCEEEEECCcCc-------HHHHHHHHHhcCCCEEEEecCCCc-cccccHHHhhcCCc-CHH
Confidence            6788899999999876 8999999875421       346677778899999999987531 1101000 001111 132


Q ss_pred             -HHHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         176 -FVYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       176 -~i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                       -+.++.+.     . -++.+++.|++.|+.|+..++.. ||+|.+||++|
T Consensus       625 ~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m  675 (771)
T d1ea0a2         625 MGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL  675 (771)
T ss_dssp             HHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHH
Confidence             12233221     1 25999999999999999999987 99999999985

>d1muca1 c.1.11.2 (A:131-372) Muconate-lactonizing enzyme {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Muconate-lactonizing enzyme
species: Pseudomonas putida [TaxId: 303]

Probab=97.82  E-value=0.00022  Score=60.71  Aligned_cols=146  Identities=9%  Similarity=0.043  Sum_probs=104.0

Q ss_pred             CCCeEEEecCCCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGDNEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      .-|+...++..+++.. +++.+.+.+.||..+-|-+|-+               +++.=.+.++++++.+  ++.+.|..
T Consensus         5 ~ipv~~~~~~~~~~~~~~~~~~~~~~~G~~~~KiKvG~~---------------~~~~Di~~i~~ir~~~g~~~~l~vDa   69 (242)
T d1muca1           5 SLEVAWTLASGDTARDIAEARHMLEIRRHRVFKLKIGAN---------------PVEQDLKHVVTIKRELGDSASVRVDV   69 (242)
T ss_dssp             EEEBCEEECCSCHHHHHHHHHHHHHTTSCSEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEEC
T ss_pred             eEEEEEEecCCCcHHHHHHHHHHHHHCCCCEEEEEECCC---------------CHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            3477788887777665 5666677778999999976522               2333344556666655  45666766


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.|+.+|-=                ..++-|++..+++++.. ++||.+...+.|+.++
T Consensus        70 N~~~~~----~~A~~~~~~l~~~~i~~iEe----------------P~~~~d~~~~~~L~~~~-~~pIa~~E~~~~~~~~  128 (242)
T d1muca1          70 NQYWDE----SQAIRACQVLGDNGIDLIEQ----------------PISRINRGGQVRLNQRT-PAPIMADESIESVEDA  128 (242)
T ss_dssp             TTCBCH----HHHHHHHHHHHHTTCCCEEC----------------CBCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHH
T ss_pred             CCCCcH----HHHHHHHHHhhhhhHHHhhc----------------chhhhhhhhhhhhhhhh-hheeecccccccccch
Confidence            666753    35789999999999887721                11234789999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHH
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~  226 (311)
                      .++++.  +|.+++-=...+...=+.+
T Consensus       129 ~~~i~~~~~d~~~~d~~~~GGit~~~~  155 (242)
T d1muca1         129 FSLAADGAASIFALKIAKNGGPRAVLR  155 (242)
T ss_dssp             HHHHHHTCCSEEEECHHHHTSHHHHHH
T ss_pred             hhhhhcccccccccccccchhHHHHHH
Confidence            999976  9999986544444433333

>d1nu5a1 c.1.11.2 (A:127-369) Chlormuconate cycloisomerase {Pseudomonas sp. p51 [TaxId: 65067]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Chlormuconate cycloisomerase
species: Pseudomonas sp. p51 [TaxId: 65067]

Probab=97.80  E-value=0.00024  Score=60.62  Aligned_cols=147  Identities=12%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      ..|+...+++.+ ++.+.++++.+.+.||+.+-|-.|-               ++++.=.+.++++++.+  ++.+.+-.
T Consensus         5 ~ipv~~~~~~~~~~~~~~e~~~~~~~~G~~~~KiKvG~---------------~~~~~Di~~v~~ir~~~g~~~~l~vDa   69 (243)
T d1nu5a1           5 SIPIAWTLASGDTARDIDSALEMIETRRHNRFKVKLGA---------------RTPAQDLEHIRSIVKAVGDRASVRVDV   69 (243)
T ss_dssp             EEEBCEEECSSCHHHHHHHHHHHHHTTSCSEEEEECSS---------------SCHHHHHHHHHHHHHHHGGGCEEEEEC
T ss_pred             ceEEEEEEcCCChHHHHHHHHHHHHhCCCCEEEEEeCC---------------CCHHHHHHHHHHHHHHhCcccceEEEC
Confidence            346777777665 4556667777888899999885442               23444455666776666  35566665


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+.    ++..++++.+++.++.++-=                ..++.|++..+++++.. ++||.+.-.+.++.++
T Consensus        70 N~~~~~----~~A~~~~~~l~~~~~~~iEe----------------P~~~~~~~~~~~l~~~~-~ipIa~gE~~~~~~~~  128 (243)
T d1nu5a1          70 NQGWDE----QTASIWIPRLEEAGVELVEQ----------------PVPRANFGALRRLTEQN-GVAILADESLSSLSSA  128 (243)
T ss_dssp             TTCCCH----HHHHHHHHHHHHHTCCEEEC----------------CSCTTCHHHHHHHHHHC-SSEEEESTTCCSHHHH
T ss_pred             CCCccc----hhHHHHHHHhcchhhhhhhh----------------hhhhccccccccchhcc-ccccccccccccchhh
Confidence            556653    45789999999999887721                11234789999999998 7999999999999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHh
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~  227 (311)
                      ..+++.  +|.+++--+-.+.-.=+.++
T Consensus       129 ~~~i~~~~~d~~~~d~~~~GGit~~~~i  156 (243)
T d1nu5a1         129 FELARDHAVDAFSLKLCNMGGIANTLKV  156 (243)
T ss_dssp             HHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             hhccccccccccccccccccchHHHHHH
Confidence            999986  99999986655544434343

>d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.79  E-value=0.00052  Score=57.90  Aligned_cols=149  Identities=13%  Similarity=0.108  Sum_probs=106.2

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEec
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~  123 (311)
                      -|+..-++..+|+++.+.|+.+.+.||+.+-+.+|.+               +++.-.+.++++|+++  ++.+.+-..-
T Consensus         5 v~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~---------------~~~~d~~~i~~ir~~~g~~~~i~vD~N~   69 (234)
T d1jpma1           5 LETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKD---------------DIATDIARIQEIRKRVGSAVKLRLDANQ   69 (234)
T ss_dssp             EEBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSS---------------CHHHHHHHHHHHHHHHGGGSEEEEECTT
T ss_pred             ceEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHcCchhhhhhhccc
Confidence            3555667778999999999999889999999986632               3344455666777666  3445555445


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+    .++..++++.+++.+.+..-+---              .++-|++..+++++.. ++||.....+.++.+..+
T Consensus        70 ~~~----~~~a~~~~~~le~~~~~i~~~EeP--------------~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~~~  130 (234)
T d1jpma1          70 GWR----PKEAVTAIRKMEDAGLGIELVEQP--------------VHKDDLAGLKKVTDAT-DTPIMADESVFTPRQAFE  130 (234)
T ss_dssp             CSC----HHHHHHHHHHHHHTTCCEEEEECC--------------SCTTCHHHHHHHHHHC-SSCEEESTTCSSHHHHHH
T ss_pred             ccc----hHHHHHHHHHHHhccCceeeecCC--------------ccccCHHHHHHhhccc-cceeecccccccchhhhh
Confidence            554    345789999999876654333211              1224889999999998 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      +++.  +|.|++--..++.-.=..++.
T Consensus       131 ~i~~~~~d~v~~d~~~~GGit~~~~i~  157 (234)
T d1jpma1         131 VLQTRSADLINIKLMKAGGISGAEKIN  157 (234)
T ss_dssp             HHHTTCCSEEEECHHHHTSHHHHHHHH
T ss_pred             hhccCCcCeEEEeeecCCCHHHHHHHH
Confidence            9975  999999766555444333333

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.79  E-value=0.00034  Score=58.92  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=105.4

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      ++++|...|...+.+..+.+++.|+|.  |||-=|.=+++.   .+|      |    +.++.+++.++.|+.|-+=.  
T Consensus         4 IspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~---s~g------~----~~i~~i~~~t~~~~dvHLMv--   68 (217)
T d2flia1           4 IAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNI---SFG------A----DVVASMRKHSKLVFDCHLMV--   68 (217)
T ss_dssp             EEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCB---CBC------H----HHHHHHHTTCCSEEEEEEES--
T ss_pred             EEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCcc---ccC------H----HHHHHHHhcCCCceEeEEEe--
Confidence            678899999999999999999999995  555444322221   122      2    45678888788898886654  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCcc--------------------------------------------ccccC
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNA--------------------------------------------FLKKL  161 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~--------------------------------------------~~~G~  161 (311)
                      .+.      ..+++.+.++|++.|++|.-+.                                            ..-|+
T Consensus        69 ~~P------~~~i~~~~~~ga~~i~~H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~  142 (217)
T d2flia1          69 VDP------ERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGF  142 (217)
T ss_dssp             SSG------GGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTC
T ss_pred             cCH------HHHHHHHHHcCCcEEEeccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCcc
Confidence            221      2466777889999999884210                                            00133


Q ss_pred             CCCcCCCCCcCcHHHHHHHHHh----CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhH
Q psy2386         162 NPKQNRKIPILKYNFVYNLKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       162 ~g~~~~~~~~~~~~~i~~i~~~----~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~  228 (311)
                      +|..  . -+.-++.++++++.    .++++|..=|||+ .+.+..+.+. ||.+.+|++++.++.+-+.+.
T Consensus       143 ~Gq~--f-~~~~~~ki~~l~~~~~~~~~~~~I~vDGGIn-~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~  210 (217)
T d2flia1         143 GGQA--F-IPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDLVSQVQ  210 (217)
T ss_dssp             SSCC--C-CGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHH
T ss_pred             cccc--c-chhhHHHHHHHHHHHHhcCCCeEEEEeCCCC-HHHHHHHHHCCCCEEEEchHHhCCCCHHHHHH
Confidence            3321  1 12235666666632    3468999999996 5678888876 999999999998887665554

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.77  E-value=0.0002  Score=61.07  Aligned_cols=138  Identities=14%  Similarity=0.045  Sum_probs=82.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      ++.+.-..-++.+.+.|+|.||+=+   +       +|+..-.+.+.+.++++.+++ .+.++-|-+-.+.-++   ++.
T Consensus        85 ~~~~~k~~E~~~Ai~~GAdEID~Vi---n-------~~~~~~~~~~ev~~~~~~~~~-~g~~lKVIlEt~~L~~---~~i  150 (234)
T d1n7ka_          85 APLEVKLVEAQTVLEAGATELDVVP---H-------LSLGPEAVYREVSGIVKLAKS-YGAVVKVILEAPLWDD---KTL  150 (234)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEECC---C-------GGGCHHHHHHHHHHHHHHHHH-TTCEEEEECCGGGSCH---HHH
T ss_pred             CcHHHHHHHHHHHHHcCCCeEEEEe---c-------hhhhhhhhHHHHHHHHHHHhc-cCceEEEEEeccccch---HHH
Confidence            4445555555666778999999842   1       122222234566677765544 3666655555553332   356


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      ...++...++|+|+|--.      .|+.+.   .-.+.+...+.+..... ++.|=++|||+|.+|+.++++. |+-+-.
T Consensus       151 ~~a~~~a~~aGadFVKTS------TG~~~~---gat~~~~~~l~~~~~~~-~vgIKasGGIrt~~~a~~~i~aGa~rIGt  220 (234)
T d1n7ka_         151 SLLVDSSRRAGADIVKTS------TGVYTK---GGDPVTVFRLASLAKPL-GMGVKASGGIRSGIDAVLAVGAGADIIGT  220 (234)
T ss_dssp             HHHHHHHHHTTCSEEESC------CSSSCC---CCSHHHHHHHHHHHGGG-TCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhhhhheeec------ccccCC---CCCHHHHHHHHHHhcCC-CCcEEeeCCcCCHHHHHHHHHccCceeec
Confidence            778888899999999533      232111   00012222233333333 6899999999999999999986 886544


Q ss_pred             ehh
Q psy2386         214 GRE  216 (311)
Q Consensus       214 gRa  216 (311)
                      .++
T Consensus       221 Ss~  223 (234)
T d1n7ka_         221 SSA  223 (234)
T ss_dssp             TTH
T ss_pred             chH
Confidence            444

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=97.69  E-value=0.00021  Score=65.49  Aligned_cols=136  Identities=13%  Similarity=0.205  Sum_probs=88.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+-+ |..++...++.. +.++|+|.|=|-..-        |       ..+.+.+.++.+++.. ++||.+.==.   
T Consensus       142 vgaAv-g~~~~~~~ra~~-L~~aG~D~ivID~Ah--------G-------~s~~~~~~i~~ik~~~~~v~vIaGNV~---  201 (388)
T d1eepa_         142 VGAAV-SIDIDTIERVEE-LVKAHVDILVIDSAH--------G-------HSTRIIELIKKIKTKYPNLDLIAGNIV---  201 (388)
T ss_dssp             CEEEE-CSCTTHHHHHHH-HHHTTCSEEEECCSC--------C-------SSHHHHHHHHHHHHHCTTCEEEEEEEC---
T ss_pred             hhhcc-CCCHHHHHHHHH-HHhhccceeeeeccc--------c-------chHHHHHHHHHHHHHCCCCceeecccc---
Confidence            34444 444555555544 566799988775211        1       2355667888887654 6787664211   


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecC------ccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHAR------NAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~R------t~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s  197 (311)
                             +.+-++.|.++|+|.|.|--.      |+...|.. .       .-+..+.++.   ... .+|||+-|||++
T Consensus       202 -------T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~~~GvG-~-------pq~sai~~~~~~~~~~-~vpiIADGGi~~  265 (388)
T d1eepa_         202 -------TKEAALDLISVGADCLKVGIGPGSICTTRIVAGVG-V-------PQITAICDVYEACNNT-NICIIADGGIRF  265 (388)
T ss_dssp             -------SHHHHHHHHTTTCSEEEECSSCSTTSHHHHHHCCC-C-------CHHHHHHHHHHHHTTS-SCEEEEESCCCS
T ss_pred             -------CHHHHHHHHhcCCCeeeeccccccccccccccccC-c-------chHHHHHHHHHHhccC-CceEEeccccCc
Confidence                   246788899999999987421      22222321 1       2344444443   334 699999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~  219 (311)
                      .-|+.+.|.- ||+||+|+.+.+
T Consensus       266 ~Gdi~KAla~GAd~VMlG~~lAg  288 (388)
T d1eepa_         266 SGDVVKAIAAGADSVMIGNLFAG  288 (388)
T ss_dssp             HHHHHHHHHHTCSEEEECHHHHT
T ss_pred             CCceeeeEEeccceeecchhhhc
Confidence            9999999987 999999998854

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=0.0013  Score=56.28  Aligned_cols=142  Identities=13%  Similarity=0.157  Sum_probs=99.7

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI  125 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~  125 (311)
                      .|+.--=|=-||-+..+|.    .+|+|.|=|-.+|=               +++.+.++++..++ .+.-+-|-+..  
T Consensus       109 ~PiLrKDFIid~~QI~ear----~~GADavLLI~~~L---------------~~~~l~~l~~~a~~-lgl~~LVEvh~--  166 (254)
T d1piia2         109 QPILCKDFIIDPYQIYLAR----YYQADACLLMLSVL---------------DDDQYRQLAAVAHS-LEMGVLTEVSN--  166 (254)
T ss_dssp             SCEEEESCCCSHHHHHHHH----HTTCSEEEEETTTC---------------CHHHHHHHHHHHHH-TTCEEEEEECS--
T ss_pred             cccchhcccCcHHHHHHHH----hhccchhhhhHhhh---------------cccHHHHHHHHHHH-HhhhHHHhhcc--
Confidence            4554444455566655444    57999999875442               45667777776555 57777776653  


Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~~~  204 (311)
                              ..| ++++.+.|++.|-|..|.-  ..+         ..|.+...++...+| +..+|+-+||.|++|+..+
T Consensus       167 --------~~E-l~~a~~~~a~iIGINnRnL--~tf---------~vd~~~t~~L~~~ip~~~~~VsESGI~~~~d~~~l  226 (254)
T d1piia2         167 --------EEE-QERAIALGAKVVGINNRDL--RDL---------SIDLNRTRELAPKLGHNVTVISESGINTYAQVREL  226 (254)
T ss_dssp             --------HHH-HHHHHHTTCSEEEEESEET--TTT---------EECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHH
T ss_pred             --------HHH-HHHHHhhcccccCccccch--hhh---------hhhhHHHHHHHHhCCCCCEEEEcCCCCCHHHHHHH
Confidence                    122 4566788999999998873  221         247777777777665 4788999999999999876


Q ss_pred             HhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         205 LNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       205 l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .+.+|+|.||.+++..|..-..+++
T Consensus       227 ~~g~davLiGeslm~~~dp~~~l~~  251 (254)
T d1piia2         227 SHFANGFLIGSALMAHDDLHAAVRR  251 (254)
T ss_dssp             TTTCSEEEECHHHHTCSCHHHHHHH
T ss_pred             HcCCCEEEEChHHhCCCCHHHHHHH
Confidence            4449999999999998886655544

>d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein Bll6730
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=97.57  E-value=0.00044  Score=59.02  Aligned_cols=130  Identities=10%  Similarity=0.045  Sum_probs=97.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      |.+++.+.+.++...+.||+.+-+..|.+               +.+.-.+.++++|+.+  ++.+.+-..-+|+.    
T Consensus        18 ~~~~~~~~~~~~~~~~~Gf~~~Kikvg~~---------------~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~----   78 (247)
T d1tzza1          18 GKGLSMLRGEMRGYLDRGYNVVKMKIGGA---------------PIEEDRMRIEAVLEEIGKDAQLAVDANGRFNL----   78 (247)
T ss_dssp             --CHHHHHHHHHHHHTTTCSEEEEECSSS---------------CHHHHHHHHHHHHHHHTTTCEEEEECTTCCCH----
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEEECCCC---------------CHHHHHHHHHHHHHhccCCceEEecccccccc----
Confidence            56899999999999999999999976532               3455566778888766  45566666666753    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh----
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY----  207 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~----  207 (311)
                      ++.+++++.+++.++.++-               +. .++-|++..+++++.. ++||.+.-.+.|..++.++++.    
T Consensus        79 ~~Ai~~~~~l~~~~i~wiE---------------eP-~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~i~~~a~~  141 (247)
T d1tzza1          79 ETGIAYAKMLRDYPLFWYE---------------EV-GDPLDYALQAALAEFY-PGPMATGENLFSHQDARNLLRYGGMR  141 (247)
T ss_dssp             HHHHHHHHHHTTSCCSEEE---------------CC-SCTTCHHHHHHHTTTC-CSCEEECTTCCSHHHHHHHHHHSCCC
T ss_pred             hhHHHHHhhcchhhhhhhc---------------cc-cccccchhhhhhhhcc-ccccccchhhhhhHHHHHHHHccCCc
Confidence            3678999999999988772               11 1234789999999988 7999999999999999999864    


Q ss_pred             --cCEEEEehhhhh
Q psy2386         208 --IDGVMLGREAYK  219 (311)
Q Consensus       208 --adgVmigRa~l~  219 (311)
                        +|.+++.-.-.+
T Consensus       142 ~~~Di~~~d~~~~G  155 (247)
T d1tzza1         142 PDRDWLQFDCALSY  155 (247)
T ss_dssp             TTTCEECCCTTTTT
T ss_pred             CcceeEeecccccc
Confidence              478877544333

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.56  E-value=0.00085  Score=60.69  Aligned_cols=138  Identities=17%  Similarity=0.208  Sum_probs=88.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~  126 (311)
                      +.+.+ |-+++.+.++..+ .++|+|.|-|-..-.               ..+.+.+.++.+++.. +.||.+--    .
T Consensus        98 v~aav-Gv~~~~~er~~~l-~~agvd~ivID~A~G---------------~s~~~~~~i~~ik~~~~~~~iIaGN----V  156 (365)
T d1zfja1          98 VAAAV-GVTSDTFERAEAL-FEAGADAIVIDTAHG---------------HSAGVLRKIAEIRAHFPNRTLIAGN----I  156 (365)
T ss_dssp             CEEEE-CSSTTHHHHHHHH-HHHTCSEEEECCSCT---------------TCHHHHHHHHHHHHHCSSSCEEEEE----E
T ss_pred             EEEEe-ccCchHHHHHHHH-HHcCCCEEEEECCcc---------------cccchhHHHHHHHhhCCCcceeecc----c
Confidence            44444 5566666665544 467999876642211               2345566777777665 56665521    1


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecC------ccccccCCCCcCCCCCcCcHHHHH---HHHHhCCCCeEEEecCCCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHAR------NAFLKKLNPKQNRKIPILKYNFVY---NLKKDFPELEIIINGGIKT  197 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~R------t~~~~G~~g~~~~~~~~~~~~~i~---~i~~~~~~ipvi~nGgI~s  197 (311)
                      .      +.+-+..|.++|+|.|.|--.      |+...|..        -+.+..|.   +.+... .+|||+-|||.+
T Consensus       157 ~------T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~~tGvG--------vPq~sai~~~~~~~~~~-~~~iIADGGi~~  221 (365)
T d1zfja1         157 A------TAEGARALYDAGVDVVKVGIGPGSICTTRVVAGVG--------VPQVTAIYDAAAVAREY-GKTIIADGGIKY  221 (365)
T ss_dssp             C------SHHHHHHHHHTTCSEEEECSSCCTTBCHHHHTCCC--------CCHHHHHHHHHHHHHHT-TCEEEEESCCCS
T ss_pred             c------cHHHHHHHHhcCCceEEeeecccccccCcceeeee--------ccchhHHHHHHHHHHhC-CceEEecCCcCc
Confidence            1      246788899999999988522      11112211        12334443   445556 799999999999


Q ss_pred             HHHHHHHHhh-cCEEEEehhhhhCC
Q psy2386         198 KKEIDLHLNY-IDGVMLGREAYKNP  221 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~l~~P  221 (311)
                      .-|+.+.|.. ||+||+|.-+.+-.
T Consensus       222 ~GDi~KAla~GAd~VMlG~~lAg~~  246 (365)
T d1zfja1         222 SGDIVKALAAGGNAVMLGSMFAGTD  246 (365)
T ss_dssp             HHHHHHHHHTTCSEEEESTTTTTBS
T ss_pred             chhhhhhhhccCCEEEecchhcccc
Confidence            9999999987 99999998875433

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.53  E-value=9.3e-05  Score=63.35  Aligned_cols=85  Identities=12%  Similarity=0.142  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+.+.|++.+++-.-++...|         .+.+...+..+++.  .+|+...|||+|.++++++++. +|-|.
T Consensus        32 P~~~a~~~~~~g~~~l~ivDLda~~~~---------~~~~~~~~~~~~~~--~~pl~~gGGI~s~~~~~~~~~~Ga~kVv  100 (241)
T d1qo2a_          32 PVELVEKLIEEGFTLIHVVDLSNAIEN---------SGENLPVLEKLSEF--AEHIQIGGGIRSLDYAEKLRKLGYRRQI  100 (241)
T ss_dssp             HHHHHHHHHHTTCCCEEEEEHHHHHHC---------CCTTHHHHHHGGGG--GGGEEEESSCCSHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHCCCCEEEEEeccccccc---------CCcchhheehhccc--ccchhhhhhhhhhhhhhhccccccceEe
Confidence            578999999999999988644332222         12355666666554  4899999999999999999987 99999


Q ss_pred             EehhhhhCCcchHHhHh
Q psy2386         213 LGREAYKNPFLMSNFDL  229 (311)
Q Consensus       213 igRa~l~~P~i~~~~~~  229 (311)
                      +++.++.+|.+...+.+
T Consensus       101 i~s~~~~~~~~~~~~~~  117 (241)
T d1qo2a_         101 VSSKVLEDPSFLKSLRE  117 (241)
T ss_dssp             ECHHHHHCTTHHHHHHT
T ss_pred             cCcccccCchhhhhhcc
Confidence            99999999998887654

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=97.48  E-value=0.00013  Score=71.75  Aligned_cols=113  Identities=13%  Similarity=0.153  Sum_probs=75.8

Q ss_pred             CChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc-CCCCCcCcH
Q psy2386          97 TKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ-NRKIPILKY  174 (311)
Q Consensus        97 ~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~-~~~~~~~~~  174 (311)
                      ..++-+...|..+|+.. +.||+||+-....       .-.++..+.++|+|.|+|.|..+-. |-++.. ..+.+ .-|
T Consensus       580 ysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g-------~~~ia~~vaka~aD~I~IdG~eGGT-GAap~~~~~~~G-lP~  650 (809)
T d1ofda2         580 YSIEDLAQLIYDLHQINPEAQVSVKLVAEIG-------IGTIAAGVAKANADIIQISGHDGGT-GASPLSSIKHAG-SPW  650 (809)
T ss_dssp             SSHHHHHHHHHHHHHHCTTSEEEEEEECSTT-------HHHHHHHHHHTTCSEEEEECTTCCC-SSEEHHHHHHBC-CCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCceEEEEeeecC-------hHHHHHHHhhcCCCEEEEeCCCCcc-ccccHHHHhcCC-ccH
Confidence            35788899999999876 7899999985322       2345666678999999999775310 100000 00111 123


Q ss_pred             HH-HHHHHHh-----C-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         175 NF-VYNLKKD-----F-PELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       175 ~~-i~~i~~~-----~-~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      +. +.++.+.     + -+|.+++.|++.|+.|+..++.. ||+|.+||++|
T Consensus       651 ~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l  702 (809)
T d1ofda2         651 ELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM  702 (809)
T ss_dssp             HHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHH
Confidence            21 2222221     1 14999999999999999999986 99999999985

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=97.47  E-value=0.00023  Score=59.29  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      -+....+.|+|++.+.+-.....    ++  ..++..|+.++++++.. ++||++-||| +.+++.++++. ||||.+.+
T Consensus       111 e~~~a~~~g~DYi~~gpvf~T~t----k~--~~~~~g~~~l~~~~~~~-~~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis  182 (206)
T d1xi3a_         111 EALEAEKKGADYLGAGSVFPTKT----KE--DARVIGLEGLRKIVESV-KIPVVAIGGI-NKDNAREVLKTGVDGIAVIS  182 (206)
T ss_dssp             HHHHHHHHTCSEEEEECSSCC----------CCCCCHHHHHHHHHHHC-SSCEEEESSC-CTTTHHHHHTTTCSEEEESH
T ss_pred             HHHHHHhcCCCEEEecccccccc----cc--ccccccHHHHHHHHHhc-CCCEEEECCC-CHHHHHHHHHhCCCEEEEhH
Confidence            35667788999999986532110    11  12457899999999987 7999999999 67889999887 99999999


Q ss_pred             hhhhCCc
Q psy2386         216 EAYKNPF  222 (311)
Q Consensus       216 a~l~~P~  222 (311)
                      +++..+.
T Consensus       183 ~I~~~~d  189 (206)
T d1xi3a_         183 AVMGAED  189 (206)
T ss_dssp             HHHTSSS
T ss_pred             HHHCCCC
Confidence            9987554

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.00046  Score=59.23  Aligned_cols=128  Identities=13%  Similarity=0.148  Sum_probs=77.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---~~pvsvKiR~g~~~~~~~  131 (311)
                      ++.+.-..-++.+.+.|+|.||+=.  |        +|...-.+.+.+.+-++++++.+   +.++-|=+-.+.-.++  
T Consensus        81 ~~~e~K~~E~~~Ai~~GAdEID~Vi--n--------~~~l~~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~~Ltd~--  148 (250)
T d1p1xa_          81 DDIDIALAETRAAIAYGADEVDVVF--P--------YRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDE--  148 (250)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEEC--C--------HHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSH--
T ss_pred             ccHhHHHHHHHHHHHcCCCeEEEee--c--------chhhccccHHHHHHHHHHHHHhhccCCceEEEEEeccccCcH--
Confidence            3445555556677778999999842  2        33333445677777777777754   4444444443322111  


Q ss_pred             HHHH-HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH---HHHHHh--C-CCCeEEEecCCCCHHHHHHH
Q psy2386         132 DFVR-DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV---YNLKKD--F-PELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       132 ~~~~-e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i---~~i~~~--~-~~ipvi~nGgI~s~~da~~~  204 (311)
                       +.. ..++.+.++|+|+|.-.      .|+.+.      .+..+.+   .+..+.  . +++.|=++|||+|++++.++
T Consensus       149 -e~i~~a~~ia~~aGadFvKTS------TG~~~~------gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~  215 (250)
T d1p1xa_         149 -ALIRKASEISIKAGADFIKTS------TGKVAV------NATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKY  215 (250)
T ss_dssp             -HHHHHHHHHHHHTTCSEEECC------CSCSSC------CCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCcCeEEec------CCcCCC------CCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHH
Confidence             233 34577789999999543      232211      1333333   333221  1 25889999999999999999


Q ss_pred             Hhh
Q psy2386         205 LNY  207 (311)
Q Consensus       205 l~~  207 (311)
                      ++.
T Consensus       216 i~~  218 (250)
T d1p1xa_         216 LAI  218 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            975

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.0035  Score=53.43  Aligned_cols=144  Identities=15%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             CCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          44 EEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        44 ~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      .+.|+.--=|=-||-++.+|.    .+|+|+|=|-..|               -+++.+.++++..++ .+.-+.|-+..
T Consensus       100 ~~~PiLrKDFIid~~QI~ea~----~~GADaiLLI~~~---------------L~~~~l~~l~~~a~~-lgle~LvEvh~  159 (251)
T d1i4na_         100 TCRPILAKDFYIDTVQVKLAS----SVGADAILIIARI---------------LTAEQIKEIYEAAEE-LGMDSLVEVHS  159 (251)
T ss_dssp             CCSCEEEECCCCSTHHHHHHH----HTTCSEEEEEGGG---------------SCHHHHHHHHHHHHT-TTCEEEEEECS
T ss_pred             ccCchhhhhhhhCHHHHHHHH----hhccceEEeeccc---------------ccHHHHHHHHHHHHH-hCCeeecccCC
Confidence            345666666666677766555    5799999987443               235667788877655 57777777653


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCCHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKTKKEID  202 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s~~da~  202 (311)
                                ..|+-+.+...|++.|-|..|.-  ..+         ..|.+...++...+| +..+|+-+||.|++|+.
T Consensus       160 ----------~~El~~al~~~~a~iiGINnRdL--~t~---------~vd~~~~~~L~~~ip~~~~~IaESGI~~~~d~~  218 (251)
T d1i4na_         160 ----------REDLEKVFSVIRPKIIGINTRDL--DTF---------EIKKNVLWELLPLVPDDTVVVAESGIKDPRELK  218 (251)
T ss_dssp             ----------HHHHHHHHTTCCCSEEEEECBCT--TTC---------CBCTTHHHHHGGGSCTTSEEEEESCCCCGGGHH
T ss_pred             ----------HHHHHHHhcccccceeeeeecch--hcc---------chhhhHHHHHHhhCCCCCEEEEcCCCCCHHHHH
Confidence                      23555555677899999999963  221         246666777777776 47899999999999997


Q ss_pred             HHHhhcCEEEEehhhhhCCcchHHhH
Q psy2386         203 LHLNYIDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       203 ~~l~~adgVmigRa~l~~P~i~~~~~  228 (311)
                      .+..++|+|.||.++|..+..-..+.
T Consensus       219 ~l~~G~davLIG~sLm~~~~p~~~l~  244 (251)
T d1i4na_         219 DLRGKVNAVLVGTSIMKAENPRRFLE  244 (251)
T ss_dssp             HHTTTCSEEEECHHHHHCSSHHHHHH
T ss_pred             HHHhCCCEEEEChHHhCCCCHHHHHH
Confidence            76434999999999999777544443

>d1yeya1 c.1.11.2 (A:184-435) RTS beta protein {Xanthomonas campestris pv. campestris [TaxId: 340]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: RTS beta protein
species: Xanthomonas campestris pv. campestris [TaxId: 340]

Probab=97.42  E-value=0.0005  Score=58.81  Aligned_cols=127  Identities=12%  Similarity=0.073  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      |.+|+++++-|+.+.+.||..+-+..|.+                ++.-.+.++++|+.+  +..+.|-..-+|+.    
T Consensus        13 ~~s~ee~~~~a~~~~~~Gf~~~KikvG~~----------------~~~di~~v~~vr~~~g~~~~l~vDaN~~~~~----   72 (252)
T d1yeya1          13 GYSDEKLVRLAKEAVADGFRTIKLKVGAN----------------VQDDIRRCRLARAAIGPDIAMAVDANQRWDV----   72 (252)
T ss_dssp             ---CHHHHHHHHHHHHTTCSEEEEECCSC----------------HHHHHHHHHHHHHHHCSSSEEEEECTTCCCH----
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEECCCC----------------HHHHHHHHHHHHHHhCCCceEeeccccCcch----
Confidence            56789999999888889999999986532                444456677888776  45566666666654    


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--ID  209 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--ad  209 (311)
                      ++..++++.+++.++.++-               + ..++.|++...++.+....+||.+.=.+.++.++.++++.  +|
T Consensus        73 ~~A~~~~~~l~~~~~~~iE---------------e-P~~~~d~~~~~~~~~~~~~ipia~gE~~~~~~~~~~~i~~~a~d  136 (252)
T d1yeya1          73 GPAIDWMRQLAEFDIAWIE---------------E-PTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVVFKQLLQAGAVD  136 (252)
T ss_dssp             HHHHHHHHTTGGGCCSCEE---------------C-CSCTTCHHHHHHHHHHSTTSCEECCTTCCSHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHhhhhcCceeec---------------C-CcchhhHHHHHHHhhccCCCceeccccccchhhhhhHhhccccc
Confidence            3568899999999888882               1 1123477777777766436999999999999999999976  99


Q ss_pred             EEEEehh
Q psy2386         210 GVMLGRE  216 (311)
Q Consensus       210 gVmigRa  216 (311)
                      .+++-=.
T Consensus       137 ~~~~d~~  143 (252)
T d1yeya1         137 LIQIDAA  143 (252)
T ss_dssp             EECCCTT
T ss_pred             eeccccc
Confidence            9988533

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00088  Score=58.69  Aligned_cols=155  Identities=12%  Similarity=0.104  Sum_probs=97.9

Q ss_pred             CCCCeEEEec---CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          44 EEHPIAFQVG---DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        44 ~~~p~~~Ql~---g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      .+.|+++-.=   |++|....+.++.+.++|+.+|.|-=. ..+|.+....|-.+....+.+.+|-.++....+..+.+=
T Consensus        76 ~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq-~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~Ii  154 (289)
T d1muma_          76 CSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQ-VGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIM  154 (289)
T ss_dssp             CCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECB-CCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEE
T ss_pred             cCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCc-ccccccccccccceecHHHHHHHHHHHHHhcCCcchhhe
Confidence            4678888774   677999999999999999999999643 223322222233444444555555444433334445565


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe---cCCCC
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN---GGIKT  197 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n---GgI~s  197 (311)
                      -|..-......++.++-++...++|+|.+-+++.+                 +.+.++++++.+ ++|+.+|   |+-..
T Consensus       155 ARTDa~~~~g~~eAi~R~~aY~eAGAD~vf~~~~~-----------------~~~~~~~~~~~~-~~Pl~~~~~~~~~~p  216 (289)
T d1muma_         155 ARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAIT-----------------ELAMYRQFADAV-QVPILANITEFGATP  216 (289)
T ss_dssp             EEECCHHHHCHHHHHHHHHHHHHTTCSEEEETTCC-----------------CHHHHHHHHHHH-CSCBEEECCSSSSSC
T ss_pred             eccccccccCHHHHHHHHHHhhhcCCcEEEecCCC-----------------CHHHHHHHHHhc-CCCEEEeecCcCCCc
Confidence            66532222235567888999999999999888764                 567889999887 5776543   33322


Q ss_pred             HHHHHHHHhh-cCEEEEehhh
Q psy2386         198 KKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       198 ~~da~~~l~~-adgVmigRa~  217 (311)
                      .-++.++-+. +..|..+-.+
T Consensus       217 ~~s~~eL~~~Gv~~v~~~~~~  237 (289)
T d1muma_         217 LFTTDELRSAHVAMALYPLSA  237 (289)
T ss_dssp             CCCHHHHHHTTCSEEEESSHH
T ss_pred             cchHHHHHHhccceEEechHH
Confidence            1133344443 8888887554

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=97.33  E-value=0.0029  Score=53.10  Aligned_cols=134  Identities=18%  Similarity=0.179  Sum_probs=83.5

Q ss_pred             HHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      ++.+.+.|++++-|+-+ .+.              ..+.+.+.++..++. ++.+.+-+  |    +     .+-+....
T Consensus        78 ~~~l~~~g~~~viigHsErR~--------------~~~e~~~~~~~~~~~-gl~~ivcv--g----e-----~~~~~~~~  131 (226)
T d1w0ma_          78 LENIKEAGGSGVILNHSEAPL--------------KLNDLARLVAKAKSL-GLDVVVCA--P----D-----PRTSLAAA  131 (226)
T ss_dssp             HHHHHHHTCCEEEECCTTSCC--------------BHHHHHHHHHHHHHT-TCEEEEEE--S----S-----HHHHHHHH
T ss_pred             HhhhcccccceEEeechhhhh--------------hccchHHHHHHHHHc-CCEEEEec--C----c-----hHHhhhhh
Confidence            45677889999988521 111              113355555555543 44433322  2    1     12345667


Q ss_pred             HcCCCEEEEecCccccccCCCCcCCCCCcCcHH----HHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         143 SAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN----FVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       143 ~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~----~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~  217 (311)
                      +.+.+.|.+-+.-..-.|.+.      .+.+.+    .++.+++..+++||++-|||.+.+++..+++. +|||.||++.
T Consensus       132 ~~~~~iIayep~waIGtg~~~------~~~~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~  205 (226)
T d1w0ma_         132 ALGPHAVAVEPPELIGTGRAV------SRYKPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAA  205 (226)
T ss_dssp             HTCCSEEEECCGGGTTTSCCH------HHHCHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHH
T ss_pred             ccccceeeecchhhccCCCCC------ChhhhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechhe
Confidence            788899888766321111110      011222    34445555568999999999999999998876 9999999999


Q ss_pred             hhCCcchHHhHh
Q psy2386         218 YKNPFLMSNFDL  229 (311)
Q Consensus       218 l~~P~i~~~~~~  229 (311)
                      +.-+..|..+.+
T Consensus       206 l~a~d~~~~i~~  217 (226)
T d1w0ma_         206 VKAKDPYAKIVE  217 (226)
T ss_dssp             HTCSSHHHHHHH
T ss_pred             ecCCCHHHHHHH
Confidence            987776666554

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.27  E-value=0.006  Score=51.01  Aligned_cols=153  Identities=18%  Similarity=0.281  Sum_probs=100.0

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccC--CCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      .++++|...|...+.+-.+.+.+.|+|.  |||-=|  +|+-     .+      .+    ++++.+++.++.|+.+=+=
T Consensus         3 kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~-----t~------~~----~~i~~i~~~~~~~~dvHLM   67 (220)
T d1h1ya_           3 KIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNL-----TI------GA----PVIQSLRKHTKAYLDCHLM   67 (220)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB-----CB------CH----HHHHHHHTTCCSEEEEEEE
T ss_pred             EEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCcccccc-----cc------Cc----hhhhhhhhhcchhhhhHHH
Confidence            4788999999999999999999999995  555444  4432     12      23    4466667777777766332


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEe---------------------------cCccc------------------
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVH---------------------------ARNAF------------------  157 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh---------------------------~Rt~~------------------  157 (311)
                      .  .+.      .+++..+.++|++.|++|                           +.|..                  
T Consensus        68 v--~~p------~~~i~~~~~~g~~~I~~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vli  139 (220)
T d1h1ya_          68 V--TNP------SDYVEPLAKAGASGFTFHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLV  139 (220)
T ss_dssp             S--SCG------GGGHHHHHHHTCSEEEEEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEE
T ss_pred             h--cch------hhhhHHhhhcccceeeecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEE
Confidence            2  211      133444455555555555                           22210                  


Q ss_pred             ---cccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHH
Q psy2386         158 ---LKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       158 ---~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~  226 (311)
                         ..|++|.  ... +.-++.|+++++..+++++..=|||+. +.+..+.+. ||.+.+|+++++++..-..
T Consensus       140 m~v~PG~~GQ--~f~-~~~l~kI~~l~~~~~~~~I~VDGGIn~-~~i~~l~~aGad~~V~GS~if~~~d~~~~  208 (220)
T d1h1ya_         140 MTVEPGFGGQ--KFM-PEMMEKVRALRKKYPSLDIEVDGGLGP-STIDVAASAGANCIVAGSSIFGAAEPGEV  208 (220)
T ss_dssp             ESSCTTCSSC--CCC-GGGHHHHHHHHHHCTTSEEEEESSCST-TTHHHHHHHTCCEEEESHHHHTSSCHHHH
T ss_pred             EecCCCCccc--ccc-hhhhHHHHHHHhcCCCceEEEEecCCH-HHHHHHHHCCCCEEEECHHHHCCCCHHHH
Confidence               1144442  111 124788999988888899999999987 477777765 9999999999887765433

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.26  E-value=0.00087  Score=56.58  Aligned_cols=120  Identities=12%  Similarity=0.054  Sum_probs=71.9

Q ss_pred             HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCC
Q psy2386          69 KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCR  147 (311)
Q Consensus        69 ~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~  147 (311)
                      ..|+|.||+=+   +       +|..+-.+.+.+.+=+.++++.+ +.++-|=+-.+.-.+   ++....++.+.++|+|
T Consensus        77 ~~GAdEID~Vi---n-------~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~---~ei~~~~~~~~~aGad  143 (226)
T d1vcva1          77 AEVADEIDVVA---P-------IGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRD---EERYTLYDIIAEAGAH  143 (226)
T ss_dssp             TTTCSEEEEEC---C-------HHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH---HHHHHHHHHHHHHTCS
T ss_pred             HcCCCeeEEEe---c-------HHHHhCCCHHHHHHHHHHHHhccCCCeEEEEecccccCH---HHHHHHHHHHHHcCcc
Confidence            34999999841   1       23333356777777777887776 444333333332222   2466778888899999


Q ss_pred             EEEEecCccccccCCCCc-------CCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh
Q psy2386         148 TFIVHARNAFLKKLNPKQ-------NRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY  207 (311)
Q Consensus       148 ~itvh~Rt~~~~G~~g~~-------~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~  207 (311)
                      +|.-.      .|+.+..       ....-+.+...+.++.+.. +++-|=++|||+|.+++.++++.
T Consensus       144 FIKTS------TGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~~g~~vgiKasGGIrt~~~A~~~i~a  205 (226)
T d1vcva1         144 FIKSS------TGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDA  205 (226)
T ss_dssp             EEECC------CSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHH
T ss_pred             eeeec------ccccCCcccccccCcccCcHHHHHHHHHHHHHhCCceeEECcCCCCCHHHHHHHHHh
Confidence            99533      2222100       0000112344555555542 35889999999999999999863

>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase {Amycolatopsis sp. [TaxId: 37632]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Amycolatopsis sp. [TaxId: 37632]

Probab=97.25  E-value=0.0035  Score=52.80  Aligned_cols=144  Identities=12%  Similarity=0.066  Sum_probs=102.8

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEE
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKH  121 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKi  121 (311)
                      .-|+-++++ +.+|+++.+.++...+.||..+-|..| |             -.|.+.    ++++++.+  +..+.+-.
T Consensus         4 ~ipvy~s~g~~~~~~~~~~~~~~~~~~Gf~~~Kikvg-~-------------~~Di~~----i~~ir~~~g~~~~l~vDa   65 (242)
T d1sjda1           4 SVPCGVSVGIMDTIPQLLDVVGGYLDEGYVRIKLKIE-P-------------GWDVEP----VRAVRERFGDDVLLQVDA   65 (242)
T ss_dssp             EEEBEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECB-T-------------TBSHHH----HHHHHHHHCTTSEEEEEC
T ss_pred             eeEeeEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECC-c-------------hhHHHH----HHHHHHHhCCCeeEeecc
Confidence            346777776 468999999999888889999998653 1             145444    45555554  45666666


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..    +..++++ +++.++.+|-               + ..++-|++..+++++.. ++||.+.-.+.+..++
T Consensus        66 N~~~~~~----~a~~~~~-l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~~pia~gE~~~~~~~~  123 (242)
T d1sjda1          66 NTAYTLG----DAPQLAR-LDPFGLLLIE---------------Q-PLEEEDVLGHAELARRI-QTPICLDESIVSARAA  123 (242)
T ss_dssp             TTCCCGG----GHHHHHT-TGGGCCSEEE---------------C-CSCTTCHHHHHHHHTTC-SSCEEESTTCCSHHHH
T ss_pred             ccccchh----hhhHHhh-hhhhhhHHHH---------------h-hhhhhhHHHHHHHHhcc-Ccccccccccccchhh
Confidence            6667654    3467775 8888888772               1 12235888899999988 7999988899999999


Q ss_pred             HHHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         202 DLHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       202 ~~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      .++++.  +|.+++--+-.+.-.=+.++.
T Consensus       124 ~~~~~~~~~d~~~~d~~~~GGit~~~~i~  152 (242)
T d1sjda1         124 ADAIKLGAVQIVNIKPGRVGGYLEARRVH  152 (242)
T ss_dssp             HHHHHTTCCSEEEECTTTTTSHHHHHHHH
T ss_pred             hhhhhcCccCEEEeccccCccchhhhHHH
Confidence            999986  999999655555444334443

>d1wufa1 c.1.11.2 (A:1127-1370) N-acylamino acid racemase {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Listeria innocua [TaxId: 1642]

Probab=97.25  E-value=0.0016  Score=55.16  Aligned_cols=144  Identities=10%  Similarity=0.130  Sum_probs=101.0

Q ss_pred             CCCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEe
Q psy2386          45 EHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR  122 (311)
                      .-|+.++++ ..+|+++.+-++...+.||+.+-+-.|- .             .|.    +.++++|+.+ +..+.+-..
T Consensus         4 ~i~~~~s~g~~~~~e~~~~~~~~~~~~Gf~~~Kikvg~-~-------------~D~----~~v~~ir~~~~~~~l~vDaN   65 (244)
T d1wufa1           4 SIKVGVSIGLQQNVETLLQLVNQYVDQGYERVKLKIAP-N-------------KDI----QFVEAVRKSFPKLSLMADAN   65 (244)
T ss_dssp             EEEBCEEECCCSCHHHHHHHHHHHHHHTCCEEEEECBT-T-------------BSH----HHHHHHHTTCTTSEEEEECT
T ss_pred             eEEEeEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEeCC-c-------------HHH----HHHHHHHHhccchhhhhhhh
Confidence            346677775 4689999999998888899999987551 0             232    4567778776 344444444


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         123 IGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       123 ~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      -+|+..    +.. +++.+++.++.++-               + ..++-|++..+++++.. ++||.+...+.++.++.
T Consensus        66 ~~~~~~----~a~-~~~~l~~~~~~wiE---------------e-P~~~~d~~~~~~l~~~~-~~pia~dE~~~~~~~~~  123 (244)
T d1wufa1          66 SAYNRE----DFL-LLKELDQYDLEMIE---------------Q-PFGTKDFVDHAWLQKQL-KTRICLDENIRSVKDVE  123 (244)
T ss_dssp             TCCCGG----GHH-HHHTTGGGTCSEEE---------------C-CSCSSCSHHHHHHHTTC-SSEEEECTTCCSHHHHH
T ss_pred             ccccch----hhh-hhhcccccchhhhc---------------C-cccccchhhhhcccccc-ccccccCccccchhhhh
Confidence            456542    344 56778888887761               1 12234788899999998 79999999999999999


Q ss_pred             HHHhh--cCEEEEehhhhhCCcchHHhH
Q psy2386         203 LHLNY--IDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       203 ~~l~~--adgVmigRa~l~~P~i~~~~~  228 (311)
                      ++++.  ||.+++--.-.+...=..++.
T Consensus       124 ~~i~~~a~d~v~~d~~~~GGit~~~ki~  151 (244)
T d1wufa1         124 QAHSIGSCRAINLKLARVGGMSSALKIA  151 (244)
T ss_dssp             HHHHHTCCSEEEECTGGGTSHHHHHHHH
T ss_pred             hhccccccceeecccccccchhhHHHHH
Confidence            99976  999998755555544334443

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.0035  Score=53.56  Aligned_cols=142  Identities=15%  Similarity=0.198  Sum_probs=90.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +.|+.--=|=-||-+..+|.    .+|+|+|=|.++              ++.  +.+.++++.. ...+.-+-|.+.. 
T Consensus       106 ~iPvLrKDFIid~~QI~ea~----~~GADaVLLIaa--------------ll~--~~l~~l~~~A-~~lgl~~LVEvh~-  163 (254)
T d1vc4a_         106 DLPLLRKDFVVDPFMLEEAR----AFGASAALLIVA--------------LLG--ELTGAYLEEA-RRLGLEALVEVHT-  163 (254)
T ss_dssp             CSCEEEESCCCSHHHHHHHH----HTTCSEEEEEHH--------------HHG--GGHHHHHHHH-HHHTCEEEEEECS-
T ss_pred             CCCcccCCccccHHHHHHHH----hccchHHHHHHH--------------HHH--HHHHHHHHHH-HHhCCceEEEecc-
Confidence            35555555555666665544    579999977632              222  1234555443 3367777887763 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHH---HHHHHHhC-CCCeEEEecCCCCHHH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNF---VYNLKKDF-PELEIIINGGIKTKKE  200 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~---i~~i~~~~-~~ipvi~nGgI~s~~d  200 (311)
                                .+=+.++.+.|+..|-|..|.-  .-+      .   .|.+.   +.++.... .+..+|+.+||.|++|
T Consensus       164 ----------~~El~~a~~~~a~iIGINnRdL--~t~------~---vd~~~~~~l~~~i~~~~~~~i~IsESGI~~~~d  222 (254)
T d1vc4a_         164 ----------ERELEIALEAGAEVLGINNRDL--ATL------H---INLETAPRLGRLARKRGFGGVLVAESGYSRKEE  222 (254)
T ss_dssp             ----------HHHHHHHHHHTCSEEEEESBCT--TTC------C---BCTTHHHHHHHHHHHTTCCSEEEEESCCCSHHH
T ss_pred             ----------HHHHhhhhcCCCCEEEEeccch--hhh------h---cchHHHHHhhhcccccCCCCEEEEccCCCCHHH
Confidence                      1224566788999999999873  211      1   23332   23322222 2578999999999999


Q ss_pred             HHHHHhhcCEEEEehhhhhCCcchHHhHh
Q psy2386         201 IDLHLNYIDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       201 a~~~l~~adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +..+-..+|+|.||.++|..|..-+.+.+
T Consensus       223 v~~l~~g~davLIGesLm~~~d~~~~l~~  251 (254)
T d1vc4a_         223 LKALEGLFDAVLIGTSLMRAPDLEAALRE  251 (254)
T ss_dssp             HHTTTTTCSEEEECHHHHTSSCHHHHHHH
T ss_pred             HHHHHcCCCEEEEChhhcCCCCHHHHHHH
Confidence            87653339999999999999987665544

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=97.20  E-value=0.0025  Score=53.17  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=90.2

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      +.+++.=|.+.++++..+.++.+.+.|+..|||-+--|.                  ..++++.+++.. ++-|.+    
T Consensus        13 ~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~------------------a~~~I~~l~~~~p~~~vGa----   70 (212)
T d1vhca_          13 ELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEA------------------AADAIRLLRANRPDFLIAA----   70 (212)
T ss_dssp             HHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTT------------------HHHHHHHHHHHCTTCEEEE----
T ss_pred             HCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHhcCCCceEee----
Confidence            357888888999999999999999999999999855442                  234556665543 222222    


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--------------------c------cccccCCCCcCCCCCcC-cHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--------------------N------AFLKKLNPKQNRKIPIL-KYNF  176 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--------------------t------~~~~G~~g~~~~~~~~~-~~~~  176 (311)
                      |---+      .+-++.+.++|++++.--+-                    |      ++..|+.--.-+.-... -..+
T Consensus        71 GTV~~------~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~  144 (212)
T d1vhca_          71 GTVLT------AEQVVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKM  144 (212)
T ss_dssp             ESCCS------HHHHHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHH
T ss_pred             eeccc------HHHHHHHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccccchHHH
Confidence            21111      23455556666666641000                    0      00112110000000001 2478


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhh
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~  219 (311)
                      ++.++.-+|+++++..|||. .+++.++++. +.++..|+.++.
T Consensus       145 lkal~~p~p~~~~~ptGGV~-~~N~~~yl~~g~v~~~~Gs~l~~  187 (212)
T d1vhca_         145 IKALLGPYAQLQIMPTGGIG-LHNIRDYLAIPNIVACGGSWFVE  187 (212)
T ss_dssp             HHHHHTTTTTCEEEEBSSCC-TTTHHHHHTSTTBCCEEECGGGC
T ss_pred             HHHHhccccCCeEEecCCCC-HHHHHHHHhCCCEEEEEChhhCC
Confidence            99999888899999999996 5899999976 778888876643

>d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Mandelate racemase
species: Pseudomonas putida [TaxId: 303]

Probab=97.19  E-value=0.0034  Score=52.47  Aligned_cols=128  Identities=12%  Similarity=0.100  Sum_probs=95.3

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCC
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDIN  129 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~  129 (311)
                      ....+++.+.+-++.+.+.||..+-|..|-+               +++.-.+.++++++.+  +..+.|-..-+|+   
T Consensus         8 ~~~d~~~~~~e~~~~~~~~G~~~~KikvG~~---------------~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~---   69 (227)
T d2mnra1           8 HSLDGVKLATERAVTAAELGFRAVKTKIGYP---------------ALDQDLAVVRSIRQAVGDDFGIMVDYNQSLD---   69 (227)
T ss_dssp             CCSCHHHHHHHHHHHHHHTTCSEEEEECCCS---------------SHHHHHHHHHHHHHHHCTTSEEEEECTTCSC---
T ss_pred             CCCCcHHHHHHHHHHHHHCCCCEEEEccCCC---------------CHHHHHHHHHHHHHHhCCCcEEEEeccccCC---
Confidence            3456778888888888889999999975532               2333345566777665  4566666666664   


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                       .++..++++.+++.|+.++-               +. .++-+++..+++++.. ++||.+.-.+.++++..++++.  
T Consensus        70 -~~~A~~~~~~l~~~~~~~iE---------------eP-~~~~~~~~~~~l~~~~-~ipia~gE~~~~~~~~~~~~~~~~  131 (227)
T d2mnra1          70 -VPAAIKRSQALQQEGVTWIE---------------EP-TLQHDYEGHQRIQSKL-NVPVQMGENWLGPEEMFKALSIGA  131 (227)
T ss_dssp             -HHHHHHHHHHHHHHTCSEEE---------------CC-SCTTCHHHHHHHHHTC-SSCEEECTTCCSHHHHHHHHHTTC
T ss_pred             -hHHHHHHHHHhhhchhhhhc---------------Cc-ccccchhhhHHHHHHc-CCccccCceeEeechhhhhHhcCc
Confidence             34678999999999988882               11 1234789999999988 7999988899999999999976  


Q ss_pred             cCEEEEeh
Q psy2386         208 IDGVMLGR  215 (311)
Q Consensus       208 adgVmigR  215 (311)
                      +|.+++--
T Consensus       132 ~d~~~~d~  139 (227)
T d2mnra1         132 CRLAMPDA  139 (227)
T ss_dssp             CSEECCBT
T ss_pred             eeeeeccc
Confidence            89888753

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=97.18  E-value=0.0018  Score=58.39  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=76.1

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      +.+.++|+|.|=|-..        .|+       -+.+.+.++.+++..  ++||.+.- +         .+.+.++.|.
T Consensus       116 ~~L~~ag~d~i~IDvA--------hG~-------~~~v~~~i~~ir~~~~~~~~IiAGN-V---------aT~e~~~~L~  170 (362)
T d1pvna1         116 PALVEAGADVLCIDSS--------DGF-------SEWQKITIGWIREKYGDKVKVGAGN-I---------VDGEGFRYLA  170 (362)
T ss_dssp             HHHHHHTCSEEEECCS--------CCC-------BHHHHHHHHHHHHHHGGGSCEEEEE-E---------CSHHHHHHHH
T ss_pred             HHHhhcCceEEeechh--------ccc-------hhHHHHHHHHHHHhhccceeeeccc-c---------cCHHHHHHHH
Confidence            3455667777666421        122       244556667775543  46776641 1         1246678889


Q ss_pred             HcCCCEEEEe------cCccccccCCCCcCCCCCcCcHHHHHHHHHhC--------CCCeEEEecCCCCHHHHHHHHhh-
Q psy2386         143 SAGCRTFIVH------ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--------PELEIIINGGIKTKKEIDLHLNY-  207 (311)
Q Consensus       143 ~~G~~~itvh------~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--------~~ipvi~nGgI~s~~da~~~l~~-  207 (311)
                      ++|+|.|-|-      +-|+...|+. .       +-+..|.+++...        ..+|||+-|||+++-|+.+.|.. 
T Consensus       171 ~aGaD~vkVGIG~Gs~CTTr~~tGvG-~-------Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~G  242 (362)
T d1pvna1         171 DAGADFIKIGIGGGSICITREQKGIG-R-------GQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMG  242 (362)
T ss_dssp             HHTCSEEEECSSCSTTBCHHHHTCBC-C-------CHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTT
T ss_pred             HhCCcEEEecccccccccchhhhccC-C-------chHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEe
Confidence            9999999884      1222223321 1       2344455443221        15899999999999999999976 


Q ss_pred             cCEEEEehhhh
Q psy2386         208 IDGVMLGREAY  218 (311)
Q Consensus       208 adgVmigRa~l  218 (311)
                      ||+||+|.-+-
T Consensus       243 Ad~VM~G~~lA  253 (362)
T d1pvna1         243 ADFIMLGRYFA  253 (362)
T ss_dssp             CSEEEESHHHH
T ss_pred             ccceeehhhhh
Confidence            99999997764

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=97.14  E-value=0.0066  Score=50.69  Aligned_cols=87  Identities=18%  Similarity=0.127  Sum_probs=59.0

Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH----HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY----NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~----~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ..+.+.+.+.+.|.+-+.-+.-.|.+.      .+.+.    ..++.+++..+++||++.|+|.+.+|+..++.. +|||
T Consensus       128 ~~~~~~~~~~~iiAyEpvwaIGtg~~~------~~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGv  201 (224)
T d1hg3a_         128 VSAAVAALNPDYVAVEPPELIGTGIPV------SKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGV  201 (224)
T ss_dssp             HHHHHHTTCCSEEEECCTTTTTTSCCT------TTSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHhhhhcccceEEecchHhhccccCC------CchhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEE
Confidence            456677888888877654321111110      11122    344555555567999999999999999999877 9999


Q ss_pred             EEehhhhhCCcchHHhHh
Q psy2386         212 MLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       212 migRa~l~~P~i~~~~~~  229 (311)
                      .||+|.+.-+...+.+++
T Consensus       202 LVGsAsl~a~d~~~~~~~  219 (224)
T d1hg3a_         202 LLASGVTKAKDPEKAIWD  219 (224)
T ss_dssp             EESHHHHTCSSHHHHHHH
T ss_pred             EEcceeecCcCHHHHHHH
Confidence            999999887765555543

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.0046  Score=51.51  Aligned_cols=149  Identities=15%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      ..|++.=|.+.++++....++.+.+.|+..|||-+--|.                  ..+.++.+++.. ++-|.+    
T Consensus        14 ~~~iipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~------------------a~~~I~~l~~~~p~~~vGa----   71 (213)
T d1wbha1          14 TGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTEC------------------AVDAIRAIAKEVPEAIVGA----   71 (213)
T ss_dssp             SCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTT------------------HHHHHHHHHHHCTTSEEEE----
T ss_pred             hCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChh------------------HHHHHHHHHHHCCCCeeec----
Confidence            368999999999999999999999999999999855442                  244455555443 222222    


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecC--------------------c------cccccCCCCcCCCCCcCc-HHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHAR--------------------N------AFLKKLNPKQNRKIPILK-YNF  176 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--------------------t------~~~~G~~g~~~~~~~~~~-~~~  176 (311)
                      |---+      .+-++.+.++|++++.--+-                    |      ++..|+.--+-+.-.... ..+
T Consensus        72 GTV~~------~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~Gg~~~  145 (213)
T d1wbha1          72 GTVLN------PQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKA  145 (213)
T ss_dssp             ESCCS------HHHHHHHHHHTCSCEEESSCCHHHHHHHHHSSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTTTHHHH
T ss_pred             ccccc------HHHHHHHHHCCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEeccchhcChHHH
Confidence            21110      23345555566665541100                    0      001121100000000111 478


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ++.++.-+|+++++..|||. .+++.++++. +.++.+|+.++.+.+
T Consensus       146 lkal~~p~p~~~~~ptGGV~-~~n~~~yl~~g~v~~~~Gs~l~~~~~  191 (213)
T d1wbha1         146 LQAIAGPFSQVRFCPTGGIS-PANYRDYLALKSVLCIGGSWLVPADA  191 (213)
T ss_dssp             HHHHHTTCTTCEEEEBSSCC-TTTHHHHHTSTTBSCEEEGGGSCHHH
T ss_pred             HHHhcCcccCCceeeeCCCC-HHHHHHHHhCCCEEEEEChhhCChhh
Confidence            89999888999999999998 5899999986 888888876654333

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=97.12  E-value=0.012  Score=49.45  Aligned_cols=161  Identities=17%  Similarity=0.211  Sum_probs=107.4

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccC--CCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCG--CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~g--CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      ...+--+.++|...|...+.+..+.+.+.|+|.  |||-=|  ||+-     .+|      |    ++++.+++.+++|+
T Consensus         7 ~~~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~-----t~~------~----~~v~~i~~~t~~~~   71 (230)
T d1rpxa_           7 SKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNI-----TIG------P----LVVDSLRPITDLPL   71 (230)
T ss_dssp             CTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCB-----CCC------H----HHHHHHGGGCCSCE
T ss_pred             ccCCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCcc-----ccC------h----HHHhhhhhccCcee
Confidence            444556889999999999999999999999985  555434  4542     222      3    45677777778887


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc----------------------------cc------------
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN----------------------------AF------------  157 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt----------------------------~~------------  157 (311)
                      .|=+=.  .+      ...++..+.++|++.+++|.-.                            ..            
T Consensus        72 dvHLMv--~~------P~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~  143 (230)
T d1rpxa_          72 DVHLMI--VE------PDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDL  143 (230)
T ss_dssp             EEEEES--SS------HHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSE
T ss_pred             eeeeee--cc------hhhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCE
Confidence            775543  11      3466777788888888877321                            00            


Q ss_pred             ------cccCCCCcCCCCCcCcHHHHHHHHHh----CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHH
Q psy2386         158 ------LKKLNPKQNRKIPILKYNFVYNLKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       158 ------~~G~~g~~~~~~~~~~~~~i~~i~~~----~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~  226 (311)
                            ..|++|..  +.+ .-++.|+++++.    .+++.|..=|||+. +.+..+.+. ||.+.+|++++.++.+-..
T Consensus       144 VllM~V~PGf~GQ~--f~~-~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~-~~i~~l~~~Gad~~V~GS~if~~~d~~~~  219 (230)
T d1rpxa_         144 VLIMSVNPGFGGQS--FIE-SQVKKISDLRKICAERGLNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFGAPDYAEA  219 (230)
T ss_dssp             EEEESSCTTCSSCC--CCT-THHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTHHHHHHHTCCEEEESHHHHTSSCHHHH
T ss_pred             EEEEEecCCcccch--hhh-hhHHHHHHHHHHHHhcCCceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHHCCCCHHHH
Confidence                  01333321  111 234556655432    23788899999986 577777765 9999999999999986666


Q ss_pred             hHh
Q psy2386         227 FDL  229 (311)
Q Consensus       227 ~~~  229 (311)
                      +.+
T Consensus       220 i~~  222 (230)
T d1rpxa_         220 IKG  222 (230)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=97.12  E-value=0.013  Score=49.86  Aligned_cols=130  Identities=11%  Similarity=0.096  Sum_probs=81.5

Q ss_pred             HHHHHHcCCCEEE--eccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec-c--CCCCCcHHHHHHHH
Q psy2386          64 AKIIQKWGYDEIN--LNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI-G--IDDINSYDFVRDFV  138 (311)
Q Consensus        64 a~~~~~~g~d~Id--iN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~-g--~~~~~~~~~~~e~~  138 (311)
                      ++.+.+.|+|+|-  ++.|+|...           +..+.+.++++++.+ .++|+.+=.-. |  ..+..+.+.+...+
T Consensus        96 ve~a~rlGadaV~~~v~~g~~~e~-----------~~l~~~~~v~~e~~~-~glP~v~e~~p~g~~~~~~~~~~~v~~aa  163 (251)
T d1ojxa_          96 VEEAVSLGASAVGYTIYPGSGFEW-----------KMFEELARIKRDAVK-FDLPLVVWSYPRGGKVVNETAPEIVAYAA  163 (251)
T ss_dssp             HHHHHHTTCSEEEEEECTTSTTHH-----------HHHHHHHHHHHHHHH-HTCCEEEEECCCSTTCCCTTCHHHHHHHH
T ss_pred             HHHHHhchhceEEEEEeCCCCchH-----------HHHHHHHHHHHHHHH-cCCeEEEEEeecCCccccCCCHHHHHHHH
Confidence            3445678999765  456665432           234566677766655 38998765532 1  22233344555667


Q ss_pred             HHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC--CHHHHHHHHh----h-cCEE
Q psy2386         139 GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK--TKKEIDLHLN----Y-IDGV  211 (311)
Q Consensus       139 ~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~--s~~da~~~l~----~-adgV  211 (311)
                      +.+.+.|+|.+.+-     +.            .+.+...++.+....+||+..||=.  +.+++.++.+    . |.||
T Consensus       164 ria~ElGaDivK~~-----~p------------~~~~~~~~~v~~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~  226 (251)
T d1ojxa_         164 RIALELGADAMKIK-----YT------------GDPKTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGI  226 (251)
T ss_dssp             HHHHHHTCSEEEEC-----CC------------SSHHHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHhCCCEEEec-----CC------------CcHHHHHHHHHhcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEE
Confidence            88889999999662     11            2344455544433258887776654  6777776653    2 9999


Q ss_pred             EEehhhhhCCc
Q psy2386         212 MLGREAYKNPF  222 (311)
Q Consensus       212 migRa~l~~P~  222 (311)
                      .+||.++..+.
T Consensus       227 ~~GRni~q~~~  237 (251)
T d1ojxa_         227 AVGRNVWQRRD  237 (251)
T ss_dssp             EESHHHHTSTT
T ss_pred             eechhhhCcCc
Confidence            99999986554

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=0.00039  Score=58.91  Aligned_cols=50  Identities=18%  Similarity=0.224  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhhCCc
Q psy2386         173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYKNPF  222 (311)
Q Consensus       173 ~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~~P~  222 (311)
                      +-+.+..+++...++|++..+||+|+++++++.+.||||.+|+++..++.
T Consensus       168 ~~~~~~~v~~~~~~~Pl~VGFGIst~e~a~~v~~~ADgVVVGSAiv~~ie  217 (229)
T d1viza_         168 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYAEHADVIVVGNAVYEDFD  217 (229)
T ss_dssp             CHHHHHHHHHTCSSSEEEEESSCCSHHHHHHHHTTCSEEEECTHHHHCHH
T ss_pred             cchhHHHHHhhccCcceEEEcccCCHHHHHHHHcCCCEEEECHHHHhhHH
Confidence            45777778777767999999999999999998866999999999877554

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.02  E-value=0.0015  Score=55.09  Aligned_cols=82  Identities=12%  Similarity=0.057  Sum_probs=57.5

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      +-+....+.|+|++.+.+-.....     .....++..++.+..+++...++||++-||| |++++.+++.. +|||.+.
T Consensus       126 ~e~~~a~~~g~DYi~~gpvf~T~s-----K~~~~~~~~~~~~~~~~~~~~~~Pv~AiGGI-~~~ni~~l~~~Ga~giAvi  199 (226)
T d2tpsa_         126 SEVKQAEEDGADYVGLGPIYPTET-----KKDTRAVQGVSLIEAVRRQGISIPIVGIGGI-TIDNAAPVIQAGADGVSMI  199 (226)
T ss_dssp             HHHHHHHHHTCSEEEECCSSCCCS-----SSSCCCCCTTHHHHHHHHTTCCCCEEEESSC-CTTTSHHHHHTTCSEEEES
T ss_pred             HHHHHHHhCcCCeEEEeccccccc-----ccccccccccchhHHHHHhcCCCCEEEecCC-CHHHHHHHHHhCCCEEEEh
Confidence            345667788999998865432110     0111223456777777654337999999999 78999999887 9999999


Q ss_pred             hhhhhCCcc
Q psy2386         215 REAYKNPFL  223 (311)
Q Consensus       215 Ra~l~~P~i  223 (311)
                      ++++..+..
T Consensus       200 s~I~~a~dp  208 (226)
T d2tpsa_         200 SAISQAEDP  208 (226)
T ss_dssp             HHHHTSSCH
T ss_pred             HHhhcCCCH
Confidence            999875554

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0068  Score=49.24  Aligned_cols=131  Identities=11%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ...+..+.++   +.++|+|.|-+|.-+                .++.+.+.++..++. +.-+.+-.-.   . .+   
T Consensus        64 ~d~~~~~~~~---~~~~gad~vtvh~~~----------------g~~~~~~~~~~~~~~-~~~~~v~~~~---~-~~---  116 (213)
T d1q6oa_          64 ADAGKILSRM---CFEANADWVTVICCA----------------DINTAKGALDVAKEF-NGDVQIELTG---Y-WT---  116 (213)
T ss_dssp             CSCHHHHHHH---HHHTTCSEEEEETTS----------------CHHHHHHHHHHHHHT-TCEEEEEECS---C-CC---
T ss_pred             ccchHHHHHH---HHHcCCCEEEEeccC----------------CchHHHHHHHHHHHc-CCceecccCC---C-CC---
Confidence            4556655443   457799999998322                245566666666654 3333332221   1 11   


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                       .+....+.+.|++.+.+|-..  ..|..|.   ...+..++.+++.+..  ++++...||+. ++++.++++. +|.++
T Consensus       117 -~~~~~~~~~~~~~~~~~~~~~--~~g~~~~---~~~~~~l~~i~~~~~~--~~~i~~~gGi~-~~~~~~~~~~Gad~iV  187 (213)
T d1q6oa_         117 -WEQAQQWRDAGIGQVVYHRSR--DAQAAGV---AWGEADITAIKRLSDM--GFKVTVTGGLA-LEDLPLFKGIPIHVFI  187 (213)
T ss_dssp             -HHHHHHHHHTTCCEEEEECCH--HHHHTTC---CCCHHHHHHHHHHHHT--TCEEEEESSCC-GGGGGGGTTSCCSEEE
T ss_pred             -HHHHHHHHHhHHHHHHHHHhc--ccCcCCe---eCCHHHHHHHHHhhcc--CceEecCCCcC-cCCHHHHHHcCCCEEE
Confidence             345677788999988876432  1222211   1112245566666553  58888888875 7888888876 99999


Q ss_pred             EehhhhhC
Q psy2386         213 LGREAYKN  220 (311)
Q Consensus       213 igRa~l~~  220 (311)
                      +||+++..
T Consensus       188 VGr~I~~a  195 (213)
T d1q6oa_         188 AGRSIRDA  195 (213)
T ss_dssp             ESHHHHTS
T ss_pred             EChhhcCC
Confidence            99998653

>d1r0ma1 c.1.11.2 (A:133-375) N-acylamino acid racemase {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.89  E-value=0.0057  Score=51.51  Aligned_cols=132  Identities=11%  Similarity=0.140  Sum_probs=92.7

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .|+-..++ .++++.+.+.++...+.||+.+-|-.| |         +    .|.+.    ++++|+.+ +..+.|-..-
T Consensus         5 v~~y~s~g~~~~~e~~~~~~~~~~~~G~~~~KiKvg-~---------~----~D~~~----v~~ir~~~~d~~l~vD~n~   66 (243)
T d1r0ma1           5 VEVGVSLGIQADEQATVDLVRRHVEQGYRRIKLKIK-P---------G----WDVQP----VRATREAFPDIRLTVDANS   66 (243)
T ss_dssp             EEBCEEECCCSSHHHHHHHHHHHHHTTCSCEEEECB-T---------T----BSHHH----HHHHHHHCTTSCEEEECTT
T ss_pred             EEeeeEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcC-c---------c----hhHHH----HHHHHHhccCceEEEeccc
Confidence            45666665 568999999999888889999988643 1         1    24444    45566555 4455555555


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..+    ...+ +.+++.++.++-               + ..++-||+..+++++.. ++||.+.-.+.++.++.+
T Consensus        67 ~~~~~~----a~~~-~~l~~~~~~~iE---------------e-P~~~~d~~~~~~l~~~~-~ipia~gE~~~~~~~~~~  124 (243)
T d1r0ma1          67 AYTLAD----AGRL-RQLDEYDLTYIE---------------Q-PLAWDDLVDHAELARRI-RTPLCLDESVASASDARK  124 (243)
T ss_dssp             CCCGGG----HHHH-HTTGGGCCSCEE---------------C-CSCTTCSHHHHHHHHHC-SSCEEESTTCCSHHHHHH
T ss_pred             cCchHH----HHHh-hhhhhccchhhh---------------h-hccccchHHHHHHhhcC-Ccccccccchhhhhhhhh
Confidence            666532    3444 677777777662               1 11234788899999998 799999889999999999


Q ss_pred             HHhh--cCEEEEehhh
Q psy2386         204 HLNY--IDGVMLGREA  217 (311)
Q Consensus       204 ~l~~--adgVmigRa~  217 (311)
                      +++.  +|.|++-=.-
T Consensus       125 ~i~~~~~d~v~~d~~~  140 (243)
T d1r0ma1         125 ALALGAGGVINLKVAR  140 (243)
T ss_dssp             HHHHTSCSEEEECTTT
T ss_pred             hhhcccccceecccce
Confidence            9975  9999986433

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.87  E-value=0.0027  Score=54.46  Aligned_cols=132  Identities=11%  Similarity=0.070  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHH---HHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCI---KAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv---~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      ..+.-..-++.+.+.|+|.||+=+-          +|..+-.+.+.+.+.+   ..+++.. +.++-|=+-.+.-.++  
T Consensus        83 ~~~~K~~Ea~~Ai~~GAdEID~Vin----------~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~~--  150 (256)
T d2a4aa1          83 SMEKVLNDTEKALDDGADEIDLVIN----------YKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKTE--  150 (256)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECC----------HHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCSH--
T ss_pred             hHHHHHHHHHHHHHcCCCeEEEecc----------HHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCcH--
Confidence            3444444455666789999998311          2222223345555554   4444443 4454443443322111  


Q ss_pred             HHHHHHHH-HHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh--------CCCCeEEEecCCCCHHHHH
Q psy2386         132 DFVRDFVG-TVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD--------FPELEIIINGGIKTKKEID  202 (311)
Q Consensus       132 ~~~~e~~~-~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~--------~~~ipvi~nGgI~s~~da~  202 (311)
                       +....+. ...++|+|+|.=      ..|+.+.   .-.+.+...+.++.+.        -+++-|=++|||+|++++.
T Consensus       151 -e~i~~~~~~~~~aGadFVKT------STG~~~~---gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~  220 (256)
T d2a4aa1         151 -DLIIKTTLAVLNGNADFIKT------STGKVQI---NATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS  220 (256)
T ss_dssp             -HHHHHHHHHHHTTTCSEEEC------CCSCSSC---CCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred             -HHHHHHHHHHHhcccHHHHh------ccCCCCC---CCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHH
Confidence             2333444 446899999943      2233211   0011233333332211        1368899999999999999


Q ss_pred             HHHhh-cC
Q psy2386         203 LHLNY-ID  209 (311)
Q Consensus       203 ~~l~~-ad  209 (311)
                      +++.. ++
T Consensus       221 ~~i~~g~~  228 (256)
T d2a4aa1         221 HYILLARR  228 (256)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99975 44

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.83  E-value=0.00096  Score=56.38  Aligned_cols=47  Identities=23%  Similarity=0.482  Sum_probs=40.1

Q ss_pred             cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEehhhhh
Q psy2386         173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLGREAYK  219 (311)
Q Consensus       173 ~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmigRa~l~  219 (311)
                      +.+.+.++++...++||+..+||+|+++++++.+.||||.||+++..
T Consensus       174 ~~~~~~~~~k~~~~~Pv~VGFGI~s~e~a~~~~~~ADgvIVGSaive  220 (231)
T d2f6ua1         174 NPELVAEVKKVLDKARLFYGGGIDSREKAREMLRYADTIIVGNVIYE  220 (231)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHHHSSEEEECHHHHH
T ss_pred             hhhHHHHHHHhcCCCCEEEEeCcCCHHHHHHHHhcCCEEEEChHHhc
Confidence            55667777777657999999999999999998877999999999754

>d1jpdx1 c.1.11.2 (X:114-321) L-Ala-D/L-Glu epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: L-Ala-D/L-Glu epimerase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.0021  Score=53.28  Aligned_cols=144  Identities=14%  Similarity=0.091  Sum_probs=96.7

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKH  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKi  121 (311)
                      |...|....|.-.+|+++++-|+.+.+.||..+-|-.|=.              .    -.+.++++|+.+ ++.+.+-.
T Consensus         3 p~~~~~~~tv~~~tpe~~~~~a~~~~~~G~~~~KiKvg~~--------------~----d~~~i~~ir~~~~d~~l~vDa   64 (208)
T d1jpdx1           3 PETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNH--------------L----ISERMVAIRTAVPDATLIVDA   64 (208)
T ss_dssp             CSEEEBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSS--------------C----HHHHHHHHHHHCTTSEEEEEC
T ss_pred             CCceeeeeEcCCCCHHHHHHHHHHHHHCCCCEEEEECCCC--------------c----HHHHHHHHHHhccccEEEEec
Confidence            3345566777777899999999988888999999864410              1    234566777766 45555555


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      .-+|+..    +..++++.+++.++.++-= +               .++.|++..+++++   .+||.+.-++.++.++
T Consensus        65 N~~~s~~----~A~~~~~~l~~~~l~~iEe-P---------------~~~~d~~~~~~l~~---~~pi~~~E~~~~~~~~  121 (208)
T d1jpdx1          65 NESWRAE----GLAARCQLLADLGVAMLEQ-P---------------LPAQDDAALENFIH---PLPICADESCHTRSNL  121 (208)
T ss_dssp             TTCCCST----THHHHHHHHHHTTCCEEEC-C---------------SCTTSCGGGGSSCC---SSCEEESTTCSSGGGH
T ss_pred             ccccchh----HHHHHHHHHHhccccccCc-c---------------CCccCHHHHHhhhc---ccceecCCCcCCHHHH
Confidence            5567654    4689999999999888730 0               11123443444442   5899999999999999


Q ss_pred             HHHHhhcCEEEEehhhhhCCcchHHh
Q psy2386         202 DLHLNYIDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       202 ~~~l~~adgVmigRa~l~~P~i~~~~  227 (311)
                      .++...+|.+++-=.-++.-.-+.++
T Consensus       122 ~~l~~~~d~~~~d~~~~GGi~~~~~~  147 (208)
T d1jpdx1         122 KALKGRYEMVNIKLDKTGGLTEALAL  147 (208)
T ss_dssp             HHHBTTBSEEEECHHHHTSHHHHHHH
T ss_pred             HHHhhccCEEEeCCcccCCHHHHHHH
Confidence            88754499888875555443333333

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=96.73  E-value=0.023  Score=47.34  Aligned_cols=158  Identities=16%  Similarity=0.194  Sum_probs=99.1

Q ss_pred             CeEEEecCCCHHHHHHHHHHHHHcCCCE--EEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          47 PIAFQVGDNEPKKLAKSAKIIQKWGYDE--INLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        47 p~~~Ql~g~~~~~~~~aa~~~~~~g~d~--IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      -++++|...|...+.+..+.+.+.|+|.  |||-=|--+++.   .+|      +    ++++.+++.+++|+.|=+=. 
T Consensus         4 ~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~---t~~------~----~~~~~i~~~t~~~~dvHLMv-   69 (221)
T d1tqja_           4 VVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNI---TIG------P----LIVDAIRPLTKKTLDVHLMI-   69 (221)
T ss_dssp             EEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCB---CBC------H----HHHHHHGGGCCSEEEEEEES-
T ss_pred             EEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCcc---ccC------c----HhHHhhhhccCcceeeeEEE-
Confidence            3678899999999999999999999995  566555444432   222      2    46777887778887665433 


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecC----------------------------ccc------------------c
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHAR----------------------------NAF------------------L  158 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~R----------------------------t~~------------------~  158 (311)
                       .+.      ..+++.+.++|++.+++|.-                            |..                  .
T Consensus        70 -~~P------~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~  142 (221)
T d1tqja_          70 -VEP------EKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVN  142 (221)
T ss_dssp             -SSG------GGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSC
T ss_pred             -eCH------HHHHHHHhhccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEec
Confidence             111      23456666666666666632                            210                  0


Q ss_pred             ccCCCCcCCCCCcCcHHHHHHHHHh----CCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHh
Q psy2386         159 KKLNPKQNRKIPILKYNFVYNLKKD----FPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       159 ~G~~g~~~~~~~~~~~~~i~~i~~~----~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~  229 (311)
                      .|++|..  .. +.-++.|+++++.    -+++.|..=|||+. +.+.++.+. ||.+.+|++++.++..-..+.+
T Consensus       143 pG~~GQ~--f~-~~~~~ki~~l~~~~~~~~~~~~I~VDGGIn~-~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~  214 (221)
T d1tqja_         143 PGFGGQS--FI-PEVLPKIRALRQMCDERGLDPWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFNAPNYAEAIAG  214 (221)
T ss_dssp             C----CC--CC-GGGHHHHHHHHHHHHHHTCCCEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHTSSCHHHHHHH
T ss_pred             CCCCCcc--cc-hhhHHHHHHHHhhhhccccceEEEEECCcCH-HHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence            1333321  11 1234556655442    23688999999985 466666665 9999999999998886555544

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.71  E-value=0.0055  Score=55.26  Aligned_cols=127  Identities=20%  Similarity=0.267  Sum_probs=79.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +|+.+.++. .+.++|+|.|-|...-..               .+.+.+.++.+++..++||.+-=-   -.       .
T Consensus       114 ~~~~~~r~~-~l~~aGvd~ivID~A~Gh---------------~~~~i~~lK~ir~~~~~~vIaGNV---aT-------~  167 (368)
T d2cu0a1         114 SPFDIKRAI-ELDKAGVDVIVVDTAHAH---------------NLKAIKSMKEMRQKVDADFIVGNI---AN-------P  167 (368)
T ss_dssp             CTTCHHHHH-HHHHTTCSEEEEECSCCC---------------CHHHHHHHHHHHHTCCSEEEEEEE---CC-------H
T ss_pred             ChHHHHHHH-HHHHcCCCEEEecCcccc---------------hhhhhhhhhhhhhhcccceeeccc---cC-------H
Confidence            355555544 455789999877633221               234556678888877777755211   11       1


Q ss_pred             HHHHHHHHcCCCEEEEe--c----CccccccCCCCcCCCCCcCcHHHHHHHH---HhCCCCeEEEecCCCCHHHHHHHHh
Q psy2386         136 DFVGTVSSAGCRTFIVH--A----RNAFLKKLNPKQNRKIPILKYNFVYNLK---KDFPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh--~----Rt~~~~G~~g~~~~~~~~~~~~~i~~i~---~~~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                      +.+  +...|+|+|-|-  +    .|+...|..        .+-+..+.++.   ... ++|||+-|||++.-|+.+.|.
T Consensus       168 e~~--~~l~gaD~VkVGIG~Gs~CTTr~~tGvG--------~Pq~sAi~e~~~~~~~~-~~~iiADGGi~~~Gdi~KAla  236 (368)
T d2cu0a1         168 KAV--DDLTFADAVKVGIGPGSICTTRIVAGVG--------VPQITAVAMVADRAQEY-GLYVIADGGIRYSGDIVKAIA  236 (368)
T ss_dssp             HHH--TTCTTSSEEEECSSCSTTBCHHHHTCCC--------CCHHHHHHHHHHHHHHH-TCEEEEESCCCSHHHHHHHHH
T ss_pred             HHH--HhhhcCcceeecccCcccccchhhcccc--------cchHHHHHHHHHHHhcc-CCeeEecCCCCcCChhheeee
Confidence            223  234699999873  1    122122321        12344444444   334 699999999999999999998


Q ss_pred             h-cCEEEEehhhhh
Q psy2386         207 Y-IDGVMLGREAYK  219 (311)
Q Consensus       207 ~-adgVmigRa~l~  219 (311)
                      - ||.||+|+.+-+
T Consensus       237 ~GAd~VMlG~~lAg  250 (368)
T d2cu0a1         237 AGADAVMLGNLLAG  250 (368)
T ss_dssp             TTCSEEEESTTTTT
T ss_pred             eccceeeccchhcc
Confidence            7 999999987643

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=96.66  E-value=0.03  Score=48.13  Aligned_cols=156  Identities=11%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             CCCCCeEEEec-C-CCHHHHHHHHHHHHHcCCCEEEeccC-CCccccccCcccCcccCChHHHHHHHHHHhccccceeEE
Q psy2386          43 AEEHPIAFQVG-D-NEPKKLAKSAKIIQKWGYDEINLNCG-CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        43 ~~~~p~~~Ql~-g-~~~~~~~~aa~~~~~~g~d~IdiN~g-CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      ..+.||++=+= | .+|....+.++.+.++|+.+|.|-=. .|..+..-.+....+....+.+.+|..++....+.++.+
T Consensus        74 ~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i  153 (275)
T d1s2wa_          74 ASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCI  153 (275)
T ss_dssp             TCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEE
T ss_pred             ccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeE
Confidence            34688888773 1 37899999999999999999999743 332211111111223333344555555554445666666


Q ss_pred             EEeccCC-CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh-CCCCeEEEecC---
Q psy2386         120 KHRIGID-DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-FPELEIIINGG---  194 (311)
Q Consensus       120 KiR~g~~-~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-~~~ipvi~nGg---  194 (311)
                      =-|..-. ....+++.++-++.+.++|+|.|-+++.+.                +.+.+..+... ...+|+..|..   
T Consensus       154 ~ARtDa~~~~~gl~eai~R~~aY~eAGAD~vf~~~~~~----------------~~~~~~~~~~~~~~~~pl~~~~~~~~  217 (275)
T d1s2wa_         154 VARVEAFIAGWGLDEALKRAEAYRNAGADAILMHSKKA----------------DPSDIEAFMKAWNNQGPVVIVPTKYY  217 (275)
T ss_dssp             EEEECTTTTTCCHHHHHHHHHHHHHTTCSEEEECCCSS----------------SSHHHHHHHHHHTTCSCEEECCSTTT
T ss_pred             EecchhhhhcCCHHHHHHHHHHHHhcCCCeeeeccccC----------------cHHHHHHHHHhhcCCCCEEEeccccc
Confidence            6676431 223466788999999999999999998852                22333333332 12588888743   


Q ss_pred             CCCHHHHHHHHhh-cCEEEEehhh
Q psy2386         195 IKTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmigRa~  217 (311)
                      -.+.+   ++-+. +..|..|-.+
T Consensus       218 ~~~~~---eL~~lGv~~v~~g~~~  238 (275)
T d1s2wa_         218 KTPTD---HFRDMGVSMVIWANHN  238 (275)
T ss_dssp             TSCHH---HHHHHTCCEEEECSHH
T ss_pred             ccHHH---HHHHcCCCEEEEchHH
Confidence            33433   33333 8888887554

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.011  Score=51.31  Aligned_cols=134  Identities=11%  Similarity=0.166  Sum_probs=78.7

Q ss_pred             HHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---cC-CCCCcHHHHHHHHHH
Q psy2386          65 KIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---GI-DDINSYDFVRDFVGT  140 (311)
Q Consensus        65 ~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---g~-~~~~~~~~~~e~~~~  140 (311)
                      +.+.+.|+|+|-+.+..-....        --...+.+.++.+++++ .++|+.+=+=.   .. +..+..+.+...++.
T Consensus       113 ~~a~~~GadaVk~lv~~~~d~~--------~e~~~~~~~~l~~~c~~-~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~  183 (291)
T d1to3a_         113 QAVKRDGAKALKLLVLWRSDED--------AQQRLNMVKEFNELCHS-NGLLSIIEPVVRPPRCGDKFDREQAIIDAAKE  183 (291)
T ss_dssp             HHHHHTTCCEEEEEEEECTTSC--------HHHHHHHHHHHHHHHHT-TTCEEEEEEEECCCSSCSCCCHHHHHHHHHHH
T ss_pred             HHHHhccCceEEEEEeeCCccc--------HHHHHHHHHHHHHHHHH-cCCcceEEEEecCCCcccccchHHHHHHHHHH
Confidence            4456789999988654321100        00112345555555554 48998876432   11 111212345677888


Q ss_pred             HHHcCCCEEEEecCccccccCCCCcCCCCCcCcHH---HHHHHHHhCCCCe-EEEecCCCCHHHHHHHHh----h-cCEE
Q psy2386         141 VSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYN---FVYNLKKDFPELE-IIINGGIKTKKEIDLHLN----Y-IDGV  211 (311)
Q Consensus       141 l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~---~i~~i~~~~~~ip-vi~nGgI~s~~da~~~l~----~-adgV  211 (311)
                      +.+.|+|.+-+---     |..       ....|+   ...++.... .+| |+..||. +.++..+.++    . |.|+
T Consensus       184 ~~e~GaDi~K~~~p-----~~~-------~~~~~~~~~~~~~~~~~~-~~p~vvLs~G~-~~~~f~~~l~~A~~aGa~G~  249 (291)
T d1to3a_         184 LGDSGADLYKVEMP-----LYG-------KGARSDLLTASQRLNGHI-NMPWVILSSGV-DEKLFPRAVRVAMEAGASGF  249 (291)
T ss_dssp             HTTSSCSEEEECCG-----GGG-------CSCHHHHHHHHHHHHHTC-CSCEEECCTTS-CTTTHHHHHHHHHHTTCCEE
T ss_pred             HHhcCCcEEEEecC-----CCc-------hhhhHHHHHHHHHHhhcC-CCcEEEEeCCC-CHHHHHHHHHHHHHCCCeEE
Confidence            88999998876311     100       012343   344555566 588 6667776 5667766654    2 9999


Q ss_pred             EEehhhhhCC
Q psy2386         212 MLGREAYKNP  221 (311)
Q Consensus       212 migRa~l~~P  221 (311)
                      .+||.+..+|
T Consensus       250 ~~GR~iw~~~  259 (291)
T d1to3a_         250 LAGRAVWSSV  259 (291)
T ss_dssp             EESHHHHGGG
T ss_pred             EeChhhhhCc
Confidence            9999999887

>d1wuea1 c.1.11.2 (A:1127-1367) N-acylamino acid racemase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: N-acylamino acid racemase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.46  E-value=0.012  Score=49.24  Aligned_cols=144  Identities=12%  Similarity=0.158  Sum_probs=97.6

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI  123 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~  123 (311)
                      .|+.++++ +.+++++.+.++...+.||+.+-|..| |             -.|.+.+    +++|+.+ +..+.|-..-
T Consensus         5 ipv~~s~g~~~~~~~~~~~~~~~~~~G~~~~Kikvg-~-------------~~D~~~v----~~ir~~~~d~~l~vDaN~   66 (241)
T d1wuea1           5 IPVGISLGIQEDLPQLLKQVQLAVEKGYQRVKLKIR-P-------------GYDVEPV----ALIRQHFPNLPLMVDANS   66 (241)
T ss_dssp             EECCEEECCCSCHHHHHHHHHHHHHTTCSCEEEECB-T-------------TBSHHHH----HHHHHHCTTSCEEEECTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEEcC-c-------------cHHHHHH----HHHHHhccccceeecccc
Confidence            46666653 468889998888888889999988754 1             1344444    4555544 4555665556


Q ss_pred             cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Q psy2386         124 GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDL  203 (311)
Q Consensus       124 g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~  203 (311)
                      +|+..    +...+ .++.+.++.++-               +. .++-+++..+++++.. ++||.+.-.+.++.++..
T Consensus        67 ~~~~~----~a~~~-~~~~~~~i~~iE---------------eP-~~~~~~~~~~~l~~~~-~~pIa~gE~~~~~~~~~~  124 (241)
T d1wuea1          67 AYTLA----DLPQL-QRLDHYQLAMIE---------------QP-FAADDFLDHAQLQREL-KTRICLDENIRSLKDCQV  124 (241)
T ss_dssp             CCCGG----GHHHH-HGGGGSCCSCEE---------------CC-SCTTCSHHHHHHHTTC-SSCEEECTTCCSHHHHHH
T ss_pred             cCCHH----Hhhhh-hhhhhhhhhhhc---------------Cc-ccccchhhhhhhhccc-ccccccCcccccchhhhh
Confidence            67543    34444 446667766651               11 1224788899999988 799999999999999999


Q ss_pred             HHhh--cCEEEEehhhhhCCcchHHhHh
Q psy2386         204 HLNY--IDGVMLGREAYKNPFLMSNFDL  229 (311)
Q Consensus       204 ~l~~--adgVmigRa~l~~P~i~~~~~~  229 (311)
                      +++.  +|.+++--+-++...=+.++.+
T Consensus       125 ~i~~~~~d~i~~d~~~~GGit~~~~i~~  152 (241)
T d1wuea1         125 ALALGSCRSINLKIPRVGGIHEALKIAA  152 (241)
T ss_dssp             HHHHTCCSEEEECHHHHTSHHHHHHHHH
T ss_pred             hhhhhhhhhhccccccccCcHHHHHHHH
Confidence            9986  9999997665555443444433

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.45  E-value=0.017  Score=47.94  Aligned_cols=141  Identities=11%  Similarity=0.079  Sum_probs=85.9

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      .|++.=|.+.++++..+.++.+.+.|+..|||-+--|                 . ..++++.+++.. ++-|.+    |
T Consensus        17 ~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p-----------------~-a~~~i~~l~~~~p~~~vGa----G   74 (216)
T d1mxsa_          17 ARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQ-----------------H-GLKAIQVLREQRPELCVGA----G   74 (216)
T ss_dssp             HSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSST-----------------H-HHHHHHHHHHHCTTSEEEE----E
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCCh-----------------h-HHHHHHHHHHhCCCcceee----e
Confidence            4788889999999999999999999999999975444                 2 235556666543 332222    2


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEEecC--------------------c------cccccCCCCcCCCCCcC----cH
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIVHAR--------------------N------AFLKKLNPKQNRKIPIL----KY  174 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itvh~R--------------------t------~~~~G~~g~~~~~~~~~----~~  174 (311)
                      ---+      .+-++.+.++|++++.--+-                    |      ++..|..-   -..=|+    -.
T Consensus        75 TV~~------~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~---vKlFPA~~~~g~  145 (216)
T d1mxsa_          75 TVLD------RSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLPGISTPSEIMMGYALGYRR---FKLFPAEISGGV  145 (216)
T ss_dssp             CCCS------HHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSSCEECEECSHHHHHHHHTTTCCE---EEETTHHHHTHH
T ss_pred             eeec------HHHHHHHHhCCCCEEECCCCcHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCE---EEeccccccccH
Confidence            1110      23355556666665541100                    0      00111100   000011    23


Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhh
Q psy2386         175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAY  218 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l  218 (311)
                      .+++.++.-+|+++++..|||. .+++.++++. +-.+..|+.++
T Consensus       146 ~~ikal~~p~p~~~fiptGGV~-~~n~~~yl~~~~v~avggs~l~  189 (216)
T d1mxsa_         146 AAIKAFGGPFGDIRFCPTGGVN-PANVRNYMALPNVMCVGTTWML  189 (216)
T ss_dssp             HHHHHHHTTTTTCEEEEBSSCC-TTTHHHHHHSTTBCCEEECTTS
T ss_pred             HHHHHHhcccccCceeccCCCC-HHHHHHHHhcCCeEEEEccccC
Confidence            6888898888899999999997 4799999975 44455565443

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=96.44  E-value=0.012  Score=50.39  Aligned_cols=73  Identities=10%  Similarity=0.117  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      .|++...+-|+...+.|+|.||||+|            .......+.+..++..+++.+++|+||-.+-           
T Consensus        22 ~d~~~~~~~A~~m~~~GAdiIDIg~g------------~~~~~e~e~~~~vi~~l~~~~~vpiSIDT~~-----------   78 (262)
T d1f6ya_          22 RDPAPVQEWARRQEEGGARALDLNVG------------PAVQDKVSAMEWLVEVTQEVSNLTLCLDSTN-----------   78 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC----------------CHHHHHHHHHHHHHTTCCSEEEEECSC-----------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEeCCC------------CCCCCHHHHHHHHHHHHHHhhcCCccccCCc-----------
Confidence            57888888888888889999999843            3344556778888888888889999996552           


Q ss_pred             HHHHHHHHH--cCCCEEE
Q psy2386         135 RDFVGTVSS--AGCRTFI  150 (311)
Q Consensus       135 ~e~~~~l~~--~G~~~it  150 (311)
                      .+.++...+  .|++.|-
T Consensus        79 ~~v~~aal~~~~Ga~iIN   96 (262)
T d1f6ya_          79 IKAIEAGLKKCKNRAMIN   96 (262)
T ss_dssp             HHHHHHHHHHCSSCEEEE
T ss_pred             cHHHHHHHHhhcccceee
Confidence            345555555  5877663

>d2gdqa1 c.1.11.2 (A:119-374) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: Hypothetical protein YitF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.43  E-value=0.013  Score=49.80  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=92.1

Q ss_pred             CeEEEec--CCCHHHHH---HHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEE
Q psy2386          47 PIAFQVG--DNEPKKLA---KSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITV  119 (311)
Q Consensus        47 p~~~Ql~--g~~~~~~~---~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsv  119 (311)
                      |+-.++.  ..+|+.+.   +-++...+.||+.+-|-.|-               .+++.=.+.++++|+.+  ++++.|
T Consensus         7 p~Yas~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~Kikvg~---------------~~~~~di~~v~avr~~~G~~~~l~v   71 (256)
T d2gdqa1           7 PVYASFQSYSDSPQWISRSVSNVEAQLKKGFEQIKVKIGG---------------TSFKEDVRHINALQHTAGSSITMIL   71 (256)
T ss_dssp             EEEEECCCBCSSTTHHHHHHHHHHHHHTTTCCEEEEECSS---------------SCHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             EeCeecCcCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC---------------CCHHHHHHHHHHHHHHcCCCeEEee
Confidence            4545543  23344444   44444456799999986541               13444456677788776  567777


Q ss_pred             EEeccCCCCCcHHHHHHHHHHHHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCH
Q psy2386         120 KHRIGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTK  198 (311)
Q Consensus       120 KiR~g~~~~~~~~~~~e~~~~l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~  198 (311)
                      -..-+|+.    ++..++++.+++. ++.++-               + ..++-|++..+++++.. ++||.+.=.+.+.
T Consensus        72 Dan~~~~~----~~A~~~~~~l~~~~~i~~~E---------------e-P~~~~d~~~~~~l~~~~-~ipIa~gE~~~~~  130 (256)
T d2gdqa1          72 DANQSYDA----AAAFKWERYFSEWTNIGWLE---------------E-PLPFDQPQDYAMLRSRL-SVPVAGGENMKGP  130 (256)
T ss_dssp             ECTTCCCH----HHHHTTHHHHTTCSCEEEEE---------------C-CSCSSCHHHHHHHHTTC-SSCEEECTTCCSH
T ss_pred             ccccCCCH----HHHHHHHHHHhhcCceeEec---------------c-ccccchHHHHHHHhhcc-cceeecCccccch
Confidence            77777754    3567888888873 555551               1 12235888899999988 7998877789999


Q ss_pred             HHHHHHHhh--cCEEEEehhhhh
Q psy2386         199 KEIDLHLNY--IDGVMLGREAYK  219 (311)
Q Consensus       199 ~da~~~l~~--adgVmigRa~l~  219 (311)
                      +++.++++.  +|.|++--.-++
T Consensus       131 ~~~~~~i~~~a~di~~~d~~~~G  153 (256)
T d2gdqa1         131 AQYVPLLSQRCLDIIQPDVMHVN  153 (256)
T ss_dssp             HHHHHHHHTTCCSEECCCTTTTT
T ss_pred             hhHHHHHHhhcceeeeccccccc
Confidence            999999976  999887644433

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=96.17  E-value=0.028  Score=47.90  Aligned_cols=159  Identities=11%  Similarity=0.067  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHhCCCcEEEecceecccccC--Cc-----hhcc------ccCCCCCCeEEEe-c---CCCHHHHHHHHHH
Q psy2386           4 TDRHCRMFHRQITRYSWLYTEMFTTQAILG--NK-----KHCL------DFNAEEHPIAFQV-G---DNEPKKLAKSAKI   66 (311)
Q Consensus         4 td~~fR~l~~~~g~~~l~~temv~a~~l~~--~~-----~~~l------~~~~~~~p~~~Ql-~---g~~~~~~~~aa~~   66 (311)
                      -|.+|=.++.+.| .++....---..-+.+  ++     +.++      .......-+++.+ +   .+.+++..+++++
T Consensus        23 yd~~~A~~ae~ag-iDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~~  101 (260)
T d1o66a_          23 YESSFAALMDDAG-VEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAE  101 (260)
T ss_dssp             CSHHHHHHHHHTT-CCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcC-CCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHHH
Confidence            4778888888888 4666543110001112  11     1111      1122333455555 2   3567888888888


Q ss_pred             HHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec--------------cCCCCCcHH
Q psy2386          67 IQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI--------------GIDDINSYD  132 (311)
Q Consensus        67 ~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~--------------g~~~~~~~~  132 (311)
                      +.+.|+|.|-|-.|..                   ..++++++.+. ++||.-=+-+              |-+ .+. .
T Consensus       102 ~~~~gadavk~eg~~~-------------------~~~~i~~l~~~-gIPV~gHiGl~Pq~~~~~gG~r~~Gk~-~e~-~  159 (260)
T d1o66a_         102 LMAAGAHMVKLEGGVW-------------------MAETTEFLQMR-GIPVCAHIGLTPQSVFAFGGYKVQGRG-GKA-Q  159 (260)
T ss_dssp             HHHTTCSEEEEECSGG-------------------GHHHHHHHHHT-TCCEEEEEESCGGGTTC------------CH-H
T ss_pred             HHHhhhhhccccchhh-------------------hhHHHHHHHHc-CCeeEeecccccchheecCcceecccc-chh-H
Confidence            8889999999873221                   23556666664 8998764432              111 222 3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVM  212 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVm  212 (311)
                      .+.+-++.++++|+.+|.+.+-.                  -+..++|.+.+ +||+|+-|.=.          .|||-+
T Consensus       160 ~l~~~a~~le~AGa~~ivlE~Vp------------------~~va~~It~~~-~iptIgIGaG~----------~cDGQv  210 (260)
T d1o66a_         160 ALLNDAKAHDDAGAAVVLMECVL------------------AELAKKVTETV-SCPTIGIGAGA----------DCDGQV  210 (260)
T ss_dssp             HHHHHHHHHHHTTCSEEEEESCC------------------HHHHHHHHHHC-SSCEEEESSCS----------CSSEEE
T ss_pred             HHHHHHHHHHHhhhhehhhhhcc------------------HHHHHHHHhhh-cceeeeccCCC----------CCCeeE
Confidence            58889999999999999886543                  36788899998 89999877321          188876


Q ss_pred             Ee
Q psy2386         213 LG  214 (311)
Q Consensus       213 ig  214 (311)
                      +=
T Consensus       211 Lv  212 (260)
T d1o66a_         211 LV  212 (260)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.12  E-value=0.017  Score=49.32  Aligned_cols=96  Identities=17%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      |.+...+-|+...+.|++.||||+|-|.            ....+.+..+++.+.+.+++|+++...-           .
T Consensus        38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~------------~~e~~~m~~li~~l~~~~d~PlsIDT~~-----------~   94 (260)
T d3bofa1          38 NEEIVIKEAKTQVEKGAEVLDVNFGIES------------QIDVRYVEKIVQTLPYVSNVPLSLDIQN-----------V   94 (260)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEECSSGG------------GSCHHHHHHHHHHHHHHTCSCEEEECCC-----------H
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCCch------------hhhHHHHHHHHHHHHhcCCCCccccCCC-----------H
Confidence            4455666677677789999999987443            2567889999999999999999985331           2


Q ss_pred             HHHHHHHHc--CCCEEE-EecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         136 DFVGTVSSA--GCRTFI-VHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       136 e~~~~l~~~--G~~~it-vh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      +.++...++  |.+.|- |.+-.                .+.+.+..+.+.. +.|||+
T Consensus        95 ~v~eaaLk~~~G~~iINsis~e~----------------~~~~~~~~l~~~y-ga~vI~  136 (260)
T d3bofa1          95 DLTERALRAYPGRSLFNSAKVDE----------------EELEMKINLLKKY-GGTLIV  136 (260)
T ss_dssp             HHHHHHHHHCSSCCEEEEEESCH----------------HHHHHHHHHHHHH-CCEEEE
T ss_pred             HHHHHHHHHhcCcceEeeccccc----------------chHHHHHHHHHhc-CCCEEE
Confidence            455555555  766553 22211                1345555666666 677765

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.046  Score=46.17  Aligned_cols=128  Identities=13%  Similarity=0.087  Sum_probs=76.7

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc---cccceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD---SVEIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~---~~~~pvsvKiR~g~~~~~~~  131 (311)
                      .+++.+    +.+.++|.|.+-|||+.-               +++...++++.+|+   ..+.|+.+-.-+....-.+ 
T Consensus        15 ~~~~~l----~~li~aGvdv~RlN~SHg---------------~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~lte-   74 (246)
T d1e0ta2          15 ESEEML----AKMLDAGMNVMRLNFSHG---------------DYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAE-   74 (246)
T ss_dssp             CSHHHH----HHHHHHTEEEEEEETTSS---------------CHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCH-
T ss_pred             CCHHHH----HHHHHCCCCEEEEECCCC---------------CHHHHHHHHHHHHHHHHHcCCCCccccccccccccc-
Confidence            345544    345567999999998763               23444555555544   3477777766543222111 


Q ss_pred             HHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhC--CCCeEEEecCCCCHHHHH---HHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF--PELEIIINGGIKTKKEID---LHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~--~~ipvi~nGgI~s~~da~---~~l  205 (311)
                       .-.+.++...+.|+|+|.+. -|++               .|...++++.+..  .+++||+  -|.+.+-+.   +.+
T Consensus        75 -kD~~~i~~a~~~~vD~ialSFVr~~---------------~Dv~~~r~~l~~~~~~~~~iia--KIE~~~al~nldeIi  136 (246)
T d1e0ta2          75 -KDKQDLIFGCEQGVDFVAASFIRKR---------------SDVIEIREHLKAHGGENIHIIS--KIENQEGLNNFDEIL  136 (246)
T ss_dssp             -HHHHHHHHHHHHTCSEEEESSCCSH---------------HHHHHHHHHHHTTTCTTCEEEE--EECSHHHHHTHHHHH
T ss_pred             -CcchhhhHHHHcCCCEEEEcCCCCH---------------HHHHHHHHHHHHhCCCCceEEE--EecchhhhhchHHHH
Confidence             12345566689999999885 4543               2555555555432  2355655  466655544   344


Q ss_pred             hhcCEEEEehhhhhC
Q psy2386         206 NYIDGVMLGREAYKN  220 (311)
Q Consensus       206 ~~adgVmigRa~l~~  220 (311)
                      +.+|||||+||=++-
T Consensus       137 ~~sDgImIaRGDLg~  151 (246)
T d1e0ta2         137 EASDGIMVARGDLGV  151 (246)
T ss_dssp             HHSSEEEEEHHHHHH
T ss_pred             hhcceEEEEccchhh
Confidence            459999999997654

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=95.89  E-value=0.058  Score=46.17  Aligned_cols=126  Identities=10%  Similarity=0.023  Sum_probs=81.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|.          ..|-...-..+.-.++++.+.+.+  ++||.+-+-  ..   +.+
T Consensus        21 iD~~~~~~~i~~l~~~Gv~gl~~~G----------~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~--~~---s~~   85 (292)
T d1xkya1          21 IDFAKTTKLVNYLIDNGTTAIVVGG----------TTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTG--SN---NTH   85 (292)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC--CS---CHH
T ss_pred             cCHHHHHHHHHHHHHCCCCEEEECe----------EccchhhCCHHHHHHHHHHHHHHhCCCceEEEecC--cc---cHH
Confidence            4778899999999899999999872          233334444555556666666655  467776333  22   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE-e-----cCCCCHHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII-N-----GGIKTKKEIDLHL  205 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~-n-----GgI~s~~da~~~l  205 (311)
                      +.+++++.+++.|+|++.+.+-.  +...+       ...-+++.+++.++. ++||+. |     |--.+++.+.++.
T Consensus        86 ~~i~~a~~a~~~Gad~ilv~pP~--~~~~s-------~~~i~~~~~~v~~~~-~~pi~iYn~P~~~~~~~~~~~~~~l~  154 (292)
T d1xkya1          86 ASIDLTKKATEVGVDAVMLVAPY--YNKPS-------QEGMYQHFKAIAEST-PLPVMLYNVPGRSIVQISVDTVVRLS  154 (292)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCC--SSCCC-------HHHHHHHHHHHHHTC-SSCEEEEECHHHHSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEECCCC--CCCCC-------HHHHHHHHHHHhccC-CCcEEEEeCCcccCCccCHHHHhhhc
Confidence            67899999999999999987542  11111       011256677777777 588754 3     4446666666654

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.88  E-value=0.42  Score=40.51  Aligned_cols=155  Identities=12%  Similarity=0.041  Sum_probs=98.6

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++.+.+.+.++..+.++.+++.|+|+|-+  .-|...          --..+.+.+-.+.+.+.+++|+.+=-
T Consensus        70 ~~~~~~vi~gv~~~s~~~~iela~~a~~~Gad~i~~--~pP~~~----------~~s~~~~~~~~~~v~~~~~~pi~iYn  137 (293)
T d1f74a_          70 AKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSA--VTPFYY----------KFSFPEIKHYYDTIIAETGSNMIVYS  137 (293)
T ss_dssp             HTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEC--CCCCSS----------CCCHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ccCccccccccccccHHHHHHHHHHHHHcCCCEeec--cCcccc----------ccchHHHHHHHhcccccCCceEEEEe
Confidence            455679999999999999999999999999999855  333321          11234455666677777789987742


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEI  201 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da  201 (311)
                      -..+..   ..-..++++++.+.. ..+.+---                ..|+..+.++++..++..|+..+|-.    +
T Consensus       138 ~P~~tg---~~l~~~~l~~L~~~~-~v~giK~~----------------~~~~~~~~~~~~~~~~~~v~~g~~~~----~  193 (293)
T d1f74a_         138 IPFLTG---VNMGIEQFGELYKNP-KVLGVKFT----------------AGDFYLLERLKKAYPNHLIWAGFDEM----M  193 (293)
T ss_dssp             CSSCSC---HHHHHHHHHHHHTST-TEEEEEEC----------------CSCHHHHHHHHHHCTTSEEEECCGGG----H
T ss_pred             ecccee---ccccchhhhhhhhcc-cccccccC----------------CCCHHHHHHHhhcCCCeEEEeCcccc----c
Confidence            222221   112356677776652 22222100                13677788888887777665544422    3


Q ss_pred             HHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         202 DLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       202 ~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      ...+. +++|.+.|-+.+. |.++.++.+.+..
T Consensus       194 ~~~~~~G~~G~i~~~~n~~-P~~~~~~~~~~~~  225 (293)
T d1f74a_         194 LPAASLGVDGAIGSTFNVN-GVRARQIFELTKA  225 (293)
T ss_dssp             HHHHHTTCCEEEESTHHHH-HHHHHHHHHHHHT
T ss_pred             chhhhCCCcccccccchhc-chHHHHHHHhhhh
Confidence            33344 4999999988764 7777777765543

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.022  Score=48.59  Aligned_cols=110  Identities=12%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec---------cCC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI---------GID  126 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~---------g~~  126 (311)
                      +.++..++|.++.+.|+|.|-|-.|.                   ...++++++.++ ++||.-=+-+         |+.
T Consensus        90 ~~~~a~~~a~~l~~~GAdaVKlEgg~-------------------~~~~~I~~L~~~-gIPV~gHiGL~PQ~~~~~GG~r  149 (262)
T d1m3ua_          90 TPEQAFENAATVMRAGANMVKIEGGE-------------------WLVETVQMLTER-AVPVCGHLGLTPQSVNIFGGYK  149 (262)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEECCCSG-------------------GGHHHHHHHHHT-TCCEEEEEESCGGGHHHHTSSC
T ss_pred             hhHHHHHHHHHHHhcCCcEEEeccch-------------------hHHHHHHHHHHc-CCeEEeehhhchhhhhhcCCcc
Confidence            45666666777777999999886221                   124567777764 8999875532         111


Q ss_pred             ----CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         127 ----DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       127 ----~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                          ..++...+.+-++.++++|+.+|.+.+-.                  -+..++|.+.+ +||+|+-|.=.      
T Consensus       150 ~qGkt~~ea~~l~~~a~~le~AGaf~ivlE~vp------------------~~va~~It~~~-~IPtIGIGAG~------  204 (262)
T d1m3ua_         150 VQGRGDEAGDQLLSDALALEAAGAQLLVLECVP------------------VELAKRITEAL-AIPVIGIGAGN------  204 (262)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTCCEEEEESCC------------------HHHHHHHHHHC-SSCEEEESSCT------
T ss_pred             ccCccHHHHHHHHHHHHHHHhhcceEEEEeccc------------------HHHHHHHHhhh-cceeEeecccC------
Confidence                11223467888999999999999886543                  36788899998 89999877321      


Q ss_pred             HHHhhcCEEEEe
Q psy2386         203 LHLNYIDGVMLG  214 (311)
Q Consensus       203 ~~l~~adgVmig  214 (311)
                          .|||-++=
T Consensus       205 ----~cDGQvlv  212 (262)
T d1m3ua_         205 ----VTDGQILV  212 (262)
T ss_dssp             ----TSSEEEEC
T ss_pred             ----CCcceEEe
Confidence                28886653

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.80  E-value=0.022  Score=51.04  Aligned_cols=69  Identities=16%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .+.++.+.++|+|.|+|..-    +|++-        .-.+.++++++..|++||| .|+|.|++.+..+++. ||+|-|
T Consensus       109 ~er~~~l~~agvd~ivID~A----~G~s~--------~~~~~i~~ik~~~~~~~iI-aGNV~T~e~a~~L~~aGaD~VkV  175 (365)
T d1zfja1         109 FERAEALFEAGADAIVIDTA----HGHSA--------GVLRKIAEIRAHFPNRTLI-AGNIATAEGARALYDAGVDVVKV  175 (365)
T ss_dssp             HHHHHHHHHHTCSEEEECCS----CTTCH--------HHHHHHHHHHHHCSSSCEE-EEEECSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEEECC----ccccc--------chhHHHHHHHhhCCCccee-ecccccHHHHHHHHhcCCceEEe
Confidence            57788899999999998522    33221        1246788899888888887 6999999999999987 999999


Q ss_pred             ehh
Q psy2386         214 GRE  216 (311)
Q Consensus       214 gRa  216 (311)
                      |-|
T Consensus       176 GiG  178 (365)
T d1zfja1         176 GIG  178 (365)
T ss_dssp             CSS
T ss_pred             eec
Confidence            843

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.76  E-value=0.13  Score=41.69  Aligned_cols=140  Identities=16%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.+++.=+--.| |+....+++.+.+.|+|.+-+|..+..                    +.++++++..+.-+...+..
T Consensus        51 ~~~if~DlK~~Di~~t~~~~~~~~~~~gad~~Tvh~~~g~--------------------~~i~~~~~~~~~~~~~~~s~  110 (206)
T d2czda1          51 GVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVGR--------------------DSVMAVKELGEIIMVVEMSH  110 (206)
T ss_dssp             CCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCH--------------------HHHHHHHTTSEEEEECCCCS
T ss_pred             CCeEEEEeeeeeecccchheehhhccccccEEEeeecccH--------------------HHHHHhhhcccceEEEeccC
Confidence            467777665555 666777788888899999999954332                    33445555432111111110


Q ss_pred             -c-CCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCC-CCeEEEecCCCC-HH
Q psy2386         124 -G-IDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFP-ELEIIINGGIKT-KK  199 (311)
Q Consensus       124 -g-~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~-~ipvi~nGgI~s-~~  199 (311)
                       + .+..++  ....+.+...+.+...+.+++..                  .+.+..+++..+ ++.++ .+||.. ..
T Consensus       111 ~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~~~~------------------~~~~~~~r~~~~~~~~i~-~pGI~~~~~  169 (206)
T d2czda1         111 PGALEFINP--LTDRFIEVANEIEPFGVIAPGTR------------------PERIGYIRDRLKEGIKIL-APGIGAQGG  169 (206)
T ss_dssp             GGGGTTTGG--GHHHHHHHHHHHCCSEEECCCSS------------------THHHHHHHHHSCTTCEEE-ECCCCSSTT
T ss_pred             CcccccccH--HHHHHHHHHHhcccccccccccC------------------chhhhhhhhhhcccceEE-CCCccccCC
Confidence             0 111111  23345556667777776543322                  244666776653 34444 444432 23


Q ss_pred             HHHHHHhh-cCEEEEehhhhhCCcchH
Q psy2386         200 EIDLHLNY-IDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       200 da~~~l~~-adgVmigRa~l~~P~i~~  225 (311)
                      +..+.++. +|.+++||+.+.-+.-..
T Consensus       170 ~~~~ai~~Gad~iVvGR~I~~a~dP~~  196 (206)
T d2czda1         170 KAKDAVKAGADYIIVGRAIYNAPNPRE  196 (206)
T ss_dssp             HHHHHHHHTCSEEEECHHHHTSSSHHH
T ss_pred             CHHHHHHhCCCEEEEChhhccCCCHHH
Confidence            45555555 999999999977555443

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=95.69  E-value=0.25  Score=41.47  Aligned_cols=98  Identities=9%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEecc
Q psy2386          46 HPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g  124 (311)
                      ..++|.|.|.+.+++.+.++.+.+.|+|.||+=+=+=..           ..+++.+.++++.+++.+ ++|+.+=+|..
T Consensus        16 pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~RlD~l~~-----------~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~   84 (252)
T d1gqna_          16 PKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMD-----------IASTQSVLTAARVIRDAMPDIPLLFTFRSA   84 (252)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCSC-----------TTCHHHHHHHHHHHHHHCTTSCEEEECCBG
T ss_pred             CEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEEccccc-----------cCCHHHHHHHHHHHHHhcCCCCEEEEEech
Confidence            348899999999999988888888899999995321000           135678899999998876 68999999985


Q ss_pred             CCCCC---cHHHHHHHHHHHHHcC-CCEEEEecC
Q psy2386         125 IDDIN---SYDFVRDFVGTVSSAG-CRTFIVHAR  154 (311)
Q Consensus       125 ~~~~~---~~~~~~e~~~~l~~~G-~~~itvh~R  154 (311)
                      ++.+.   +.++..++.+.+.+.| +++|.|--.
T Consensus        85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~  118 (252)
T d1gqna_          85 KEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELF  118 (252)
T ss_dssp             GGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGG
T ss_pred             hhCCCCCCCHHHHHHHHHHHHHcCCCceEecccc
Confidence            54221   1234568888888888 899988643

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.67  E-value=0.069  Score=45.67  Aligned_cols=127  Identities=12%  Similarity=0.054  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~  133 (311)
                      |.+.+.+-++.+.+.|+++|=++          +..|-...-..+.=.++++.+.+.+  .+||.+-+-.    .+ .++
T Consensus        20 D~~~~~~~i~~l~~~Gv~Gi~v~----------GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~----~s-t~~   84 (295)
T d1o5ka_          20 DLESYERLVRYQLENGVNALIVL----------GTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGT----NS-TEK   84 (295)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEES----------SGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCC----SC-HHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEC----------eeccchhhCCHHHHHHHhhhhccccccCCceEeeccc----cc-HHH
Confidence            77888888998888999999886          1223333223333355666666655  4777774332    22 336


Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHHHhh
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLHLNY  207 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~l~~  207 (311)
                      .+++++.+++.|+|++.+.+..  +...+.       ..-+++.+++.++. ++|++ .|     |--.+++.+.++.+.
T Consensus        85 ai~~a~~A~~~Gad~v~v~pP~--y~~~s~-------~~i~~~~~~ia~a~-~~pi~iYn~P~~~g~~~~~~~~~~l~~~  154 (295)
T d1o5ka_          85 TLKLVKQAEKLGANGVLVVTPY--YNKPTQ-------EGLYQHYKYISERT-DLGIVVYNVPGRTGVNVLPETAARIAAD  154 (295)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCC--SSCCCH-------HHHHHHHHHHHTTC-SSCEEEEECHHHHSCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEeCCC--CCCCCH-------HHHHHHHHHHHhcc-CCCeeEEeccchhcccchhHHHHHHHhh
Confidence            7899999999999999997653  111110       01245666777765 67764 33     555677777776643

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=95.59  E-value=0.057  Score=44.53  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=79.5

Q ss_pred             HHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         103 SDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       103 ~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      .++++.+++.   ++..=+|..  +   .++..++++.+.+.|+..|-|.-|+.               .-++.|+++++
T Consensus         5 ~~~~~~l~~~---~iipvlr~~--~---~~~~~~~~~al~~~Gi~~iEitl~~~---------------~a~~~I~~l~~   61 (212)
T d1vhca_           5 QQIIEKLREL---KIVPVIALD--N---ADDILPLADTLAKNGLSVAEITFRSE---------------AAADAIRLLRA   61 (212)
T ss_dssp             HHHHHHHHHH---CEEEEECCS--S---GGGHHHHHHHHHHTTCCEEEEETTST---------------THHHHHHHHHH
T ss_pred             HHHHHHHHHC---CEEEEEeCC--C---HHHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHh
Confidence            4566666664   444445652  1   12578999999999999999998863               34688999999


Q ss_pred             hCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         183 DFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       183 ~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      ..|+ -++|.|-|.|.+++++..+. |+.++.=   --||.+.+...+.  +-...+-.-|+.|+...
T Consensus        62 ~~p~-~~vGaGTV~~~~~~~~a~~aGa~FivSP---~~~~~v~~~a~~~--~i~~iPGv~TpsEi~~A  123 (212)
T d1vhca_          62 NRPD-FLIAAGTVLTAEQVVLAKSSGADFVVTP---GLNPKIVKLCQDL--NFPITPGVNNPMAIEIA  123 (212)
T ss_dssp             HCTT-CEEEEESCCSHHHHHHHHHHTCSEEECS---SCCHHHHHHHHHT--TCCEECEECSHHHHHHH
T ss_pred             cCCC-ceEeeeecccHHHHHHHHhhCCcEEECC---CCCHHHHHHHHhc--CCCccCCcCCHHHHHHH
Confidence            8877 57999999999999999987 9987751   1344444443331  11111123477776644

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=95.56  E-value=0.042  Score=45.50  Aligned_cols=77  Identities=16%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ||..=+|..  +.   ++..++++.+.+.|+..|-|.-|+.               ..++.|+.+++.+|+ -++|.|.|
T Consensus        18 ~iipvl~~~--~~---~~a~~~~~al~~~Gi~~iEitl~~p---------------~a~~~i~~l~~~~p~-~~vGaGTV   76 (216)
T d1mxsa_          18 RILPVITIA--RE---EDILPLADALAAGGIRTLEVTLRSQ---------------HGLKAIQVLREQRPE-LCVGAGTV   76 (216)
T ss_dssp             SEEEEECCS--CG---GGHHHHHHHHHHTTCCEEEEESSST---------------HHHHHHHHHHHHCTT-SEEEEECC
T ss_pred             CEEEEEECC--CH---HHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHhCCC-cceeeeee
Confidence            444445653  11   2578999999999999999988863               246889999999887 57999999


Q ss_pred             CCHHHHHHHHhh-cCEEEE
Q psy2386         196 KTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmi  213 (311)
                      .|.+++++..+. |+.++.
T Consensus        77 ~~~~~~~~a~~aGa~Fivs   95 (216)
T d1mxsa_          77 LDRSMFAAVEAAGAQFVVT   95 (216)
T ss_dssp             CSHHHHHHHHHHTCSSEEC
T ss_pred             ecHHHHHHHHhCCCCEEEC
Confidence            999999999976 887764

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.47  E-value=0.041  Score=45.49  Aligned_cols=78  Identities=12%  Similarity=0.153  Sum_probs=63.5

Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecC
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGG  194 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGg  194 (311)
                      .||..=+|..  +.   ++..++++.+.+.|+..|-|.-|+.               .-.+.|+++++.+|++ ++|.|-
T Consensus        15 ~~iipvlr~~--~~---~~a~~~~~al~~~Gi~~iEitl~tp---------------~a~~~I~~l~~~~p~~-~vGaGT   73 (213)
T d1wbha1          15 GPVVPVIVVK--KL---EHAVPMAKALVAGGVRVLNVTLRTE---------------CAVDAIRAIAKEVPEA-IVGAGT   73 (213)
T ss_dssp             CSEEEEECCS--SG---GGHHHHHHHHHHTTCCEEEEESCST---------------THHHHHHHHHHHCTTS-EEEEES
T ss_pred             CCEEEEEECC--CH---HHHHHHHHHHHHCCCCEEEEeCCCh---------------hHHHHHHHHHHHCCCC-eeeccc
Confidence            3666666762  22   2578999999999999999988863               2468899999998875 699999


Q ss_pred             CCCHHHHHHHHhh-cCEEEE
Q psy2386         195 IKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       195 I~s~~da~~~l~~-adgVmi  213 (311)
                      |.|.+++++..+. |+.++.
T Consensus        74 V~~~~~~~~a~~aGa~FivS   93 (213)
T d1wbha1          74 VLNPQQLAEVTEAGAQFAIS   93 (213)
T ss_dssp             CCSHHHHHHHHHHTCSCEEE
T ss_pred             cccHHHHHHHHHCCCcEEEC
Confidence            9999999999986 998875

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=95.45  E-value=0.014  Score=52.84  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..+.+..|.++|+|.|+|..-.    |++-        .-.+.++++++..|++|| ..|+|.|++.+..+++. ||+|-
T Consensus       152 ~~~ra~~L~~aG~D~ivID~Ah----G~s~--------~~~~~i~~ik~~~~~v~v-IaGNV~T~e~a~~L~~~GaD~Vk  218 (388)
T d1eepa_         152 TIERVEELVKAHVDILVIDSAH----GHST--------RIIELIKKIKTKYPNLDL-IAGNIVTKEAALDLISVGADCLK  218 (388)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC----CSSH--------HHHHHHHHHHHHCTTCEE-EEEEECSHHHHHHHHTTTCSEEE
T ss_pred             HHHHHHHHHhhccceeeeeccc----cchH--------HHHHHHHHHHHHCCCCce-eeccccCHHHHHHHHhcCCCeee
Confidence            4688999999999999996322    2221        125789999988888886 56999999999999987 99999


Q ss_pred             Eehh
Q psy2386         213 LGRE  216 (311)
Q Consensus       213 igRa  216 (311)
                      ||-|
T Consensus       219 VGiG  222 (388)
T d1eepa_         219 VGIG  222 (388)
T ss_dssp             ECSS
T ss_pred             eccc
Confidence            9854

>d1jdfa1 c.1.11.2 (A:138-446) D-glucarate dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: D-glucarate dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.082  Score=45.99  Aligned_cols=126  Identities=11%  Similarity=0.081  Sum_probs=83.4

Q ss_pred             CCHHHHHHHHHHHHH-cCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQK-WGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~-~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      .+|+++++-|+.+.+ .||+.+-|-.|-               ..++.-.+.++++++++ +..+.|-..-+|+.    +
T Consensus        46 ~~p~~~~~~a~~~~~~~Gf~~~KiKvG~---------------~~~~~di~~v~avr~~~pd~~l~vDaN~~~s~----~  106 (309)
T d1jdfa1          46 MTPDAVVRLAEAAYEKYGFNDFKLKGGV---------------LAGEEEAESIVALAQRFPQARITLDPNGAWSL----N  106 (309)
T ss_dssp             CSHHHHHHHHHHHHHHHCCSCEEEECSS---------------SCHHHHHHHHHHHHHHCTTSCEEEECTTBBCH----H
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEECCC---------------CCHHHHHHHHHHHHHHCCCCeEEeeccCCCCH----H
Confidence            479999888887665 599999886431               23455567788888876 34455544445543    3


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDG  210 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adg  210 (311)
                      +.+++++.++ .++.++-= +-..        .   ....+.+..+++++.. ++||.++-.+.+..++.++++.  +|.
T Consensus       107 ~Ai~~~~~le-~~l~w~EE-Pv~~--------~---d~~~~~~~l~~lr~~~-~ipIa~gE~~~~~~~~~~~i~~~a~di  172 (309)
T d1jdfa1         107 EAIKIGKYLK-GSLAYAED-PCGA--------E---QGFSGREVMAEFRRAT-GLPTATNMIATDWRQMGHTLSLQSVDI  172 (309)
T ss_dssp             HHHHHHHHTT-TTCSCEES-CBCC--------B---TTBCHHHHHHHHHHHH-CCCEEESSSSSSHHHHHHHHHHTCCSE
T ss_pred             HHHHHHHHHh-hcchhhhh-hccc--------C---cchhhHHHHHHhhccc-ccceecCcccchhhhhhhhhhhcccee
Confidence            5677887775 56666520 0000        0   0012356788899887 7999999999999999999975  776


Q ss_pred             EEE
Q psy2386         211 VML  213 (311)
Q Consensus       211 Vmi  213 (311)
                      ++.
T Consensus       173 ~~~  175 (309)
T d1jdfa1         173 PLA  175 (309)
T ss_dssp             EBC
T ss_pred             eec
Confidence            554

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=95.25  E-value=0.12  Score=44.16  Aligned_cols=86  Identities=9%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=+|          +..|-...-..+.=.++++.+.+.+  .+|+.+-+-    .. +.+
T Consensus        20 iD~~~l~~~i~~l~~~Gv~gi~~~----------G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~----~~-s~~   84 (295)
T d1hl2a_          20 LDKASLRRLVQFNIQQGIDGLYVG----------GSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVG----CV-STA   84 (295)
T ss_dssp             BCHHHHHHHHHHHHHHTCSEEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECC----CS-SHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEC----------eEccchhhCCHHHHHHHHhhhHHhhccccceeeccc----cc-hhh
Confidence            477889999998888999999887          2234444445555567777776665  467766332    22 234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCc
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      +..++++.+++.|++++.+.+..
T Consensus        85 ~~i~~a~~a~~~Gad~~~v~~p~  107 (295)
T d1hl2a_          85 ESQQLAASAKRYGFDAVSAVTPF  107 (295)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHHHHHHHHHhcCCceeeeeecc
Confidence            67899999999999999987553

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.072  Score=46.00  Aligned_cols=166  Identities=16%  Similarity=0.168  Sum_probs=95.1

Q ss_pred             ecCCCHHHHHHHHHHHHHcCCCEEEecc-CCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCc
Q psy2386          52 VGDNEPKKLAKSAKIIQKWGYDEINLNC-GCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINS  130 (311)
Q Consensus        52 l~g~~~~~~~~aa~~~~~~g~d~IdiN~-gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~  130 (311)
                      .+..|+-    .|+++++.||+.+=+-- ++-...   -|+-=.=+-..+.+.+.++.|.+++++||+|-.-.|+-+.. 
T Consensus        21 ~~~~D~~----sA~~~e~~Gf~a~~~sg~~~sa~~---~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~-   92 (289)
T d1muma_          21 VGTINAN----HALLAQRAGYQAIYLSGGGVAAGS---LGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSA-   92 (289)
T ss_dssp             EECSSHH----HHHHHHHTTCSCEEECHHHHHHTT---SCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSH-
T ss_pred             ecCCCHH----HHHHHHHcCCCEEEhhHHHHHHHc---cCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccc-
Confidence            3445554    46788999999887741 111100   01110002245667777888888899999999888876532 


Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccc-cccCCCCcCCCCCcCcHHHHHHHHHh---C--CCCeEEEecCCCCHHHHHHH
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAF-LKKLNPKQNRKIPILKYNFVYNLKKD---F--PELEIIINGGIKTKKEIDLH  204 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~-~~G~~g~~~~~~~~~~~~~i~~i~~~---~--~~ipvi~nGgI~s~~da~~~  204 (311)
                       ....+.++.++++|+.++++-..+.. ..|+.+... -.+  --+.+.+++..   .  |++-|++-=|-.....+.+.
T Consensus        93 -~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~-~~~--~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eA  168 (289)
T d1muma_          93 -FNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKA-IVS--KEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAA  168 (289)
T ss_dssp             -HHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCC-BCC--HHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHH
T ss_pred             -hHHHHHHHHHHHCCCCEEEecCcccccccccccccc-eec--HHHHHHHHHHHHHhcCCcchhheeccccccccCHHHH
Confidence             24678899999999999999755320 112211111 011  12456666543   1  45667777776643333333


Q ss_pred             Hh-------h-cCEEEEehhhhhCCcchHHhHhhh
Q psy2386         205 LN-------Y-IDGVMLGREAYKNPFLMSNFDLNY  231 (311)
Q Consensus       205 l~-------~-adgVmigRa~l~~P~i~~~~~~~~  231 (311)
                      ++       . ||+|++- + +.++..++++.+.+
T Consensus       169 i~R~~aY~eAGAD~vf~~-~-~~~~~~~~~~~~~~  201 (289)
T d1muma_         169 IERAQAYVEAGAEMLFPE-A-ITELAMYRQFADAV  201 (289)
T ss_dssp             HHHHHHHHHTTCSEEEET-T-CCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCCcEEEec-C-CCCHHHHHHHHHhc
Confidence            32       2 9999983 2 24455555555543

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=95.22  E-value=0.14  Score=43.76  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=87.7

Q ss_pred             HHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHH
Q psy2386          63 SAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVS  142 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~  142 (311)
                      .|++++++||+.|=+-- -....  .-|+-=.=+-..+.+.+.++.|.+++++||+|-+-.|+.+.   .+..+.++.++
T Consensus        28 SAr~~e~aGf~a~~~ss-~~~aa--s~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~---~~v~~tv~~~~  101 (275)
T d1s2wa_          28 SARIVQEAGFKGIWGSG-LSVSA--QLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNF---NNARRLVRKLE  101 (275)
T ss_dssp             HHHHHHHHTCSCEEECC-HHHHH--TC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSH---HHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEhhH-HHHHH--HcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccc---hHHHHHHHHHH
Confidence            57888889999987751 11111  11111101234566677888888889999999999998532   25678899999


Q ss_pred             HcCCCEEEEecCcc-cccc-CCCCcCCCCCcCcH-HHHHHHHH---hC--CCCeEEEecCCC----CHHHHHHHHh----
Q psy2386         143 SAGCRTFIVHARNA-FLKK-LNPKQNRKIPILKY-NFVYNLKK---DF--PELEIIINGGIK----TKKEIDLHLN----  206 (311)
Q Consensus       143 ~~G~~~itvh~Rt~-~~~G-~~g~~~~~~~~~~~-~~i~~i~~---~~--~~ipvi~nGgI~----s~~da~~~l~----  206 (311)
                      ++|+.+|.+-..+. ...+ +.|+.   ....+- +.+.+++.   ..  +++-|++--|-.    ..+++.+-..    
T Consensus       102 ~aGaagi~iEDq~~pk~~~~~~~~~---~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~e  178 (275)
T d1s2wa_         102 DRGVAGACLEDKLFPKTNSLHDGRA---QPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRN  178 (275)
T ss_dssp             HTTCCEEEEECBCC--------CTT---CCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred             HhccceeEeeccccccccccccccc---cccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHh
Confidence            99999999975432 0111 11111   111222 23333332   21  467788877753    3566654332    


Q ss_pred             h-cCEEEEehhhhhCCcchHHh
Q psy2386         207 Y-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       207 ~-adgVmigRa~l~~P~i~~~~  227 (311)
                      . ||+|++= +.-.++.+...+
T Consensus       179 AGAD~vf~~-~~~~~~~~~~~~  199 (275)
T d1s2wa_         179 AGADAILMH-SKKADPSDIEAF  199 (275)
T ss_dssp             TTCSEEEEC-CCSSSSHHHHHH
T ss_pred             cCCCeeeec-cccCcHHHHHHH
Confidence            2 9999982 233344444433

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.16  E-value=0.21  Score=40.67  Aligned_cols=146  Identities=12%  Similarity=0.148  Sum_probs=82.5

Q ss_pred             CCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          46 HPIAFQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        46 ~p~~~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      .|++.=+--. -|......++.+.++|+|.+-+|..++.                +-+...+++..+. +..+.+=....
T Consensus        55 ~~i~~D~K~~DIg~t~~~~~~~~~~~gad~~TVh~~~g~----------------~~i~~~~~~a~~~-~~~~~~l~~~s  117 (212)
T d1km4a_          55 CRIIADFAVADIPETNEKICRATFKAGADAIIVHGFPGA----------------DSVRACLNVAEEM-GREVFLLTEMS  117 (212)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTCH----------------HHHHHHHHHHHHH-TCEEEEECSCS
T ss_pred             cceehhhhhhccccHHHHhHhhhccccccEEEEeccCCh----------------HHHHHHHHHHHhc-CCccccchhhc
Confidence            3565444333 3566666677777899999999955543                3344445444432 33333322211


Q ss_pred             CCCCC-c-HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH-HH
Q psy2386         125 IDDIN-S-YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK-EI  201 (311)
Q Consensus       125 ~~~~~-~-~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~-da  201 (311)
                      ....+ . .....++++...+.|++.+..-.                  ...+.+.++++..++-.++..+||...- +.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~g~~g~v~~~------------------~~~~~i~~ir~~~~~~~~~vtpGI~~~g~~~  179 (212)
T d1km4a_         118 HPGAEMFIQGAADEIARMGVDLGVKNYVGPS------------------TRPERLSRLREIIGQDSFLISPGVGAQGGDP  179 (212)
T ss_dssp             SGGGGTTHHHHHHHHHHHHHHHTCCEEECCT------------------TCHHHHHHHHHHHCSSSEEEECCBSTTSBCH
T ss_pred             chhhhhhhhhHHHHHHHHHHHhCCccccccc------------------cCHHHHhhhhhccCCceeEEcCccccCCCCH
Confidence            11100 0 12344556666788888774321                  1335677787776555677889996421 23


Q ss_pred             HHHHhhcCEEEEehhhhhCCcchHH
Q psy2386         202 DLHLNYIDGVMLGREAYKNPFLMSN  226 (311)
Q Consensus       202 ~~~l~~adgVmigRa~l~~P~i~~~  226 (311)
                      .+.+..+|.+.+||+.+.-+.-...
T Consensus       180 ~d~~~~ad~iIvGR~I~~a~dP~~a  204 (212)
T d1km4a_         180 GETLRFADAIIVGRSIYLADNPAAA  204 (212)
T ss_dssp             HHHTTTCSEEEECHHHHTSSSHHHH
T ss_pred             HHHHhhCCEEEECchhccCCCHHHH
Confidence            3334459999999999765544433

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.062  Score=47.32  Aligned_cols=97  Identities=14%  Similarity=0.260  Sum_probs=66.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHH
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFV  177 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i  177 (311)
                      +|+...+.++.+++. ..++.+=+  |.+++     ..+.++.+.++|++.++|..-    .|++.        .-.+.+
T Consensus        71 ~~e~~~~~i~~vk~~-~~~v~~~v--gv~~~-----~~e~~~~li~agvd~ivId~A----~G~~~--------~~~~~i  130 (330)
T d1vrda1          71 TPDEQARQVSIVKKT-RLLVGAAV--GTSPE-----TMERVEKLVKAGVDVIVIDTA----HGHSR--------RVIETL  130 (330)
T ss_dssp             CHHHHHHHHHHHHTC-CBCCEEEE--CSSTT-----HHHHHHHHHHTTCSEEEECCS----CCSSH--------HHHHHH
T ss_pred             chhhhHHHHHHHhhh-ccEEEEEE--ecCHH-----HHHHHHHHHHCCCCEEEEecC----CCCch--------hHHHHH
Confidence            466666677777653 44444433  33332     357788899999999998522    22221        124678


Q ss_pred             HHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEeh
Q psy2386         178 YNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGR  215 (311)
Q Consensus       178 ~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigR  215 (311)
                      +.+++..|++|| ..|.|.|++.++++++. ||+|-+|-
T Consensus       131 k~ik~~~~~~~v-iaGnV~t~~~a~~l~~~GaD~v~VGi  168 (330)
T d1vrda1         131 EMIKADYPDLPV-VAGNVATPEGTEALIKAGADAVKVGV  168 (330)
T ss_dssp             HHHHHHCTTSCE-EEEEECSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHhCCCCCE-EeechhHHHHHHHHHHcCCCEEeecc
Confidence            888888877764 56889999999998876 99998863

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.96  E-value=0.28  Score=40.30  Aligned_cols=114  Identities=13%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHH
Q psy2386          99 PLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVY  178 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~  178 (311)
                      .....+.++.+++. +.-+.+-+.+..+.       ..+...+....+|.|.+-+-.   .|++|..  .. +.-++-|+
T Consensus        97 ~~~~~~~i~~i~~~-g~~~Gial~p~t~~-------~~~~~~l~~~~~d~vlim~V~---pG~~GQ~--f~-~~~l~KI~  162 (221)
T d1tqxa_          97 TERCIQLAKEIRDN-NLWCGISIKPKTDV-------QKLVPILDTNLINTVLVMTVE---PGFGGQS--FM-HDMMGKVS  162 (221)
T ss_dssp             HHHHHHHHHHHHTT-TCEEEEEECTTSCG-------GGGHHHHTTTCCSEEEEESSC---TTCSSCC--CC-GGGHHHHH
T ss_pred             cchhhHHHHHHHhc-CCeEEEeecccccc-------ccchhhcccccccEEEEEeec---ccccccc--cC-cchhHHHH
Confidence            33444555666554 44455544443111       122222333457888765443   2444431  11 23578889


Q ss_pred             HHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCcchHHh
Q psy2386         179 NLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNF  227 (311)
Q Consensus       179 ~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~  227 (311)
                      ++++..+++.+..=|||+. +.+..+.+. ||.+.+|++++.++..-..+
T Consensus       163 ~lr~~~~~~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~if~~~d~~~~i  211 (221)
T d1tqxa_         163 FLRKKYKNLNIQVDGGLNI-ETTEISASHGANIIVAGTSIFNAEDPKYVI  211 (221)
T ss_dssp             HHHHHCTTCEEEEESSCCH-HHHHHHHHHTCCEEEESHHHHTCSSHHHHH
T ss_pred             HHHHhcCCcceEEEcccCH-HhHHHHHHcCCCEEEEChHHHCCCCHHHHH
Confidence            9998888899999999965 678888876 99999999998877654433

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=94.92  E-value=0.083  Score=44.81  Aligned_cols=139  Identities=17%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             CeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc---cccceeEEEE
Q psy2386          47 PIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD---SVEIDITVKH  121 (311)
Q Consensus        47 p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~---~~~~pvsvKi  121 (311)
                      .+++=|+  ..+++.+    +.+.++|.|.+-|||+.-.               ++...++++.+|+   ..+.||.+-.
T Consensus        22 KIIaTiGPas~~~~~l----~~li~aGvdv~RiN~SHg~---------------~e~~~~~i~~iR~~~~~~g~~v~i~~   82 (258)
T d1pkla2          22 RIICTIGPSTQSVEAL----KGLIQSGMSVARMNFSHGS---------------HEYHQTTINNVRQAAAELGVNIAIAL   82 (258)
T ss_dssp             EEEEECCGGGCSHHHH----HHHHHHTEEEEEEETTSSC---------------HHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEeeCCCcCCHHHH----HHHHHcCCCEEEEECCCCC---------------HHHHHHHHHHHHHHHHHhCCCccccc
Confidence            4666664  3455554    3445679999999987642               3445555555544   4577776655


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKK  199 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~  199 (311)
                      .+.-...-+. .-.+-++...+.|+|++.+. -|++               .|...++++.... .+++||+  -|.+.+
T Consensus        83 d~~gp~~~t~-kd~~di~~a~~~~vD~ialSFVrs~---------------~Dv~~ir~~l~~~~~~~~iia--KIE~~~  144 (258)
T d1pkla2          83 DTKGPPAVSA-KDRVDLQFGVEQGVDMIFASFIRSA---------------EQVGDVRKALGPKGRDIMIIC--KIENHQ  144 (258)
T ss_dssp             ECCCCCSSCH-HHHHHHHHHHHHTCSEEEETTCCSH---------------HHHHHHHHHHCGGGTTSEEEE--EECSHH
T ss_pred             cccccccccc-cHHHHHHHHHhcCCCeEEEeCCCCH---------------HHHHHHHHHHHHcCCCCceEE--EecCch
Confidence            5421111111 11233456678999999885 4442               2555565554331 2466666  677766


Q ss_pred             HHHH---HHhhcCEEEEehhhhhCCc
Q psy2386         200 EIDL---HLNYIDGVMLGREAYKNPF  222 (311)
Q Consensus       200 da~~---~l~~adgVmigRa~l~~P~  222 (311)
                      -+..   .+..+|||||+||=++--.
T Consensus       145 al~nldeI~~~sDgImIaRGDLg~ei  170 (258)
T d1pkla2         145 GVQNIDSIIEESDGIMVARGDLGVEI  170 (258)
T ss_dssp             HHHTHHHHHHHSSEEEECHHHHTTTS
T ss_pred             hhhhhhhHHhhCCeeeEechhhhhhc
Confidence            5543   3444999999999866543

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.88  E-value=0.061  Score=48.25  Aligned_cols=101  Identities=15%  Similarity=0.325  Sum_probs=69.0

Q ss_pred             ChHHHHHHHHHHhccccceeEEE---------EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCC
Q psy2386          98 KPLLVSDCIKAMRDSVEIDITVK---------HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRK  168 (311)
Q Consensus        98 ~~~~~~~iv~~v~~~~~~pvsvK---------iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~  168 (311)
                      +|+...+-++.+++....|...+         ..+|..+     +..+.+..+.++|++.++++.-..    ++-     
T Consensus        80 ~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~-----~~~~~~~~l~~agv~vi~id~a~g----~~~-----  145 (378)
T d1jr1a1          80 TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHE-----DDKYRLDLLALAGVDVVVLDSSQG----NSI-----  145 (378)
T ss_dssp             CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSST-----HHHHHHHHHHHHTCCEEEECCSSC----CSH-----
T ss_pred             CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCH-----HHHHHHHHHHhhccceEeeeccCc----cch-----
Confidence            55666666677776555443322         2233322     235677888999999999975532    110     


Q ss_pred             CCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehh
Q psy2386         169 IPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGRE  216 (311)
Q Consensus       169 ~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa  216 (311)
                         .-.+.++.+++..|++||| .|.|.|++.+..+++. ||+|-+|-|
T Consensus       146 ---~~~~~i~~ik~~~~~~~iI-aGnVaT~e~a~~L~~aGAD~VkVGiG  190 (378)
T d1jr1a1         146 ---FQINMIKYMKEKYPNLQVI-GGNVVTAAQAKNLIDAGVDALRVGMG  190 (378)
T ss_dssp             ---HHHHHHHHHHHHSTTCEEE-EEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred             ---hhHHHHHHHHHHCCCCcee-ecccccHHHHHHHHHhCCCEEeeccc
Confidence               1246788888888777775 8999999999999876 999998755

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.84  E-value=0.26  Score=42.22  Aligned_cols=137  Identities=16%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             CCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEe--ccC----CCccccccCcccCcccCChHHHHHHHHHHhccc
Q psy2386          44 EEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINL--NCG----CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV  113 (311)
Q Consensus        44 ~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~Idi--N~g----CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~  113 (311)
                      .++|++.-+.    |-+|+++++++..+..-|+|.|-=  |++    ||..            ++.+.+.+.++...+.+
T Consensus        17 ~~RPL~~tiiKPk~GLsp~~~a~~~~~~~~GG~D~IKDDE~l~~~~~~p~~------------eRv~~~~~a~~~a~~~T   84 (283)
T d1ykwa1          17 HGRPIFFGVVKPNIGLSPGEFAEIAYQSWLGGLDIAKDDEMLADVTWSSIE------------ERAAHLGKARRKAEAET   84 (283)
T ss_dssp             CSSCEEEEECSSCSSCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHH------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCceecCCccCCCCCCccHH------------HHHHHHHHHHHHHHHHh
Confidence            4799998886    889999999999888889999853  433    4432            34455555555555555


Q ss_pred             cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEec
Q psy2386         114 EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIING  193 (311)
Q Consensus       114 ~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nG  193 (311)
                      +..+..=..+. .+   .++..+-++.+.+.|++++.|..-+                .-|..+..+++.. ++||.+--
T Consensus        85 G~~~lya~NiT-~~---~~em~~ra~~~~~~G~~~~mv~~~~----------------~G~~a~~~l~~~~-~lpi~~H~  143 (283)
T d1ykwa1          85 GEPKIYLANIT-DE---VDSLMEKHDVAVRNGANALLINALP----------------VGLSAVRMLSNYT-QVPLIGHF  143 (283)
T ss_dssp             SSCCEEEEECC-CC---GGGHHHHHHHHHHHTCCEEEEEHHH----------------HCHHHHHHHHHHC-SSCEEEEC
T ss_pred             CCeeEEeeecC-CC---HHHHHHHHHHHHHhCCCEEEEeccc----------------chHHHHHHHHhhc-CCCeEeee
Confidence            54444334443 12   2246788899999999999876433                2366777787765 79998742


Q ss_pred             ------------CCCCHHHHHHHHhh--cCEEEEe
Q psy2386         194 ------------GIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       194 ------------gI~s~~da~~~l~~--adgVmig  214 (311)
                                  || |..-..++...  +|.|.++
T Consensus       144 a~~g~~~r~~~~Gi-s~~vl~KL~RLaGaD~ih~~  177 (283)
T d1ykwa1         144 PFIASFSRMEKYGI-HSKVMTKLQRLAGLDAVIMP  177 (283)
T ss_dssp             TTTHHHHCSTTSEE-CHHHHHHHHHHHTCSEEEEE
T ss_pred             ccceeeccCcCCCc-cHHHHHHHHHHcCCCceeec
Confidence                        23 33334444443  9999987

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=1  Score=38.28  Aligned_cols=116  Identities=10%  Similarity=0.131  Sum_probs=71.3

Q ss_pred             cCChHHHHHHHHHHhccccceeEEEEec-cCC-------CC-CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcC
Q psy2386          96 MTKPLLVSDCIKAMRDSVEIDITVKHRI-GID-------DI-NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQN  166 (311)
Q Consensus        96 l~~~~~~~~iv~~v~~~~~~pvsvKiR~-g~~-------~~-~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~  166 (311)
                      .+|-+...++++..++ .+++|-.-+-. |-.       .. ..+-+..+..+-+++.|+|.|.+.=.|. -+.|.+   
T Consensus       110 eeNi~~t~~vv~~ah~-~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~-HG~y~~---  184 (284)
T d1gvfa_         110 AENVKLVKSVVDFCHS-QDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTA-HGLYSK---  184 (284)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCC-SSCCSS---
T ss_pred             HHHHHHHHHHHHHHHh-hccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCce-eeccCC---
Confidence            3455667777766655 36665554321 110       00 0011234445556789999998865543 122222   


Q ss_pred             CCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH-HHHHHhh-cCEEEEehhhhh
Q psy2386         167 RKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE-IDLHLNY-IDGVMLGREAYK  219 (311)
Q Consensus       167 ~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d-a~~~l~~-adgVmigRa~l~  219 (311)
                        .+..|++.++++++.+ ++|++.-|+=..++| +++++.. +.-|=|++.+-.
T Consensus       185 --~p~l~~~~L~~i~~~~-~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~~  236 (284)
T d1gvfa_         185 --TPKIDFQRLAEIREVV-DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI  236 (284)
T ss_dssp             --CCCCCHHHHHHHHHHC-CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             --CCccccchhhhhhccc-cCCeEeeCCCCCCHHHHHHHHHcCeEEEEechHHHH
Confidence              2457999999999998 799999887766555 5566655 778888887743

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.73  E-value=0.26  Score=41.99  Aligned_cols=85  Identities=12%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=++..          .|-...-..+.-.++++.+.+.+  .+|+.+-+    ... +.+
T Consensus        25 iD~~~l~~~i~~li~~Gv~Gi~v~G~----------tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~----~~~-s~~   89 (296)
T d1xxxa1          25 LDTATAARLANHLVDQGCDGLVVSGT----------TGESPTTTDGEKIELLRAVLEAVGDRARVIAGA----GTY-DTA   89 (296)
T ss_dssp             BCHHHHHHHHHHHHHTTCSEEEESST----------TTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEEC----CCS-CHH
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHHHHHHHHhccccceEecc----ccc-hhH
Confidence            37788999999999999999988622          23333223333355666655554  36776532    222 234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecC
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      +..++++.+++.|+|++.+.+-
T Consensus        90 ~~i~~a~~a~~~Gad~v~i~~P  111 (296)
T d1xxxa1          90 HSIRLAKACAAEGAHGLLVVTP  111 (296)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECC
T ss_pred             HHHHHHHHHHHhcCCeEEEEec
Confidence            6789999999999999988654

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.60  E-value=0.14  Score=43.39  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=75.5

Q ss_pred             CCCeEEEe-cC---CCHHHH-HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEE
Q psy2386          45 EHPIAFQV-GD---NEPKKL-AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITV  119 (311)
Q Consensus        45 ~~p~~~Ql-~g---~~~~~~-~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsv  119 (311)
                      ..-+++-+ ||   .++++. ..|.+.+.+.|+|.|-|-.| +                  ...++++++.+. ++||.-
T Consensus        78 ~~~iv~DmPf~s~~~s~~~a~~nA~r~~~~~ga~avkleg~-~------------------~~~~~I~~L~~~-gIPV~g  137 (262)
T d1oy0a_          78 HALVVADLPFGSYEAGPTAALAAATRFLKDGGAHAVKLEGG-E------------------RVAEQIACLTAA-GIPVMA  137 (262)
T ss_dssp             TSEEEEECCTTSSTTCHHHHHHHHHHHHHTTCCSEEEEEBS-G------------------GGHHHHHHHHHH-TCCEEE
T ss_pred             cceeEecchhhhcccchHHHHHHHHHHHhccccceeeechh-h------------------hhHHHHHHHHhc-CCceEE
Confidence            33455555 22   345554 44556778899999998611 1                  123556666664 888876


Q ss_pred             EEecc---------CC---CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         120 KHRIG---------ID---DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       120 KiR~g---------~~---~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      =+-+-         +.   ...+...+++-++.++++|+..|.+..-                  ..+..++|.+.+ +|
T Consensus       138 HiGLtPQ~~~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE~V------------------p~~la~~It~~~-~I  198 (262)
T d1oy0a_         138 HIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEMV------------------PAELATQITGKL-TI  198 (262)
T ss_dssp             EEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEESC------------------CHHHHHHHHHHC-SS
T ss_pred             eeeecceeeeecCccceeccchhhhHhHHHHHHHHhCCcEEEecccc------------------cHhHHHHHHhhC-Cc
Confidence            44321         00   0111234556689999999999988644                  347788999998 89


Q ss_pred             eEEEecCCCCHHHHHHHHhhcCEEEEe
Q psy2386         188 EIIINGGIKTKKEIDLHLNYIDGVMLG  214 (311)
Q Consensus       188 pvi~nGgI~s~~da~~~l~~adgVmig  214 (311)
                      |+|+-|-=.          .|||-++=
T Consensus       199 PtIGIGAG~----------~cDGQvLV  215 (262)
T d1oy0a_         199 PTVGIGAGP----------NCDGQVLV  215 (262)
T ss_dssp             CEEEESSCS----------CSSEEEEC
T ss_pred             eEEEeccCC----------CCCeeEEe
Confidence            999877311          28886653

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=94.54  E-value=0.1  Score=44.15  Aligned_cols=74  Identities=7%  Similarity=0.019  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++.+++.||++|.|..-..+++|            +++.+.++++.+ ++||.---=|.++-++.+.... ||+|.
T Consensus        67 p~~~A~~y~~~GA~aiSVLTe~~~F~G------------s~~dl~~v~~~~-~iPvLrKDFIid~~QI~ea~~~GADaVL  133 (254)
T d1vc4a_          67 PVEAALAYARGGARAVSVLTEPHRFGG------------SLLDLKRVREAV-DLPLLRKDFVVDPFMLEEARAFGASAAL  133 (254)
T ss_dssp             HHHHHHHHHHTTCSEEEEECCCSSSCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHhcCCceEEEEcCcccccc------------cHHHHHHHHHHc-CCCcccCCccccHHHHHHHHhccchHHH
Confidence            468899999999999999765443444            688899999998 8999999999999999998876 99999


Q ss_pred             EehhhhhC
Q psy2386         213 LGREAYKN  220 (311)
Q Consensus       213 igRa~l~~  220 (311)
                      +--+++.+
T Consensus       134 LIaall~~  141 (254)
T d1vc4a_         134 LIVALLGE  141 (254)
T ss_dssp             EEHHHHGG
T ss_pred             HHHHHHHH
Confidence            98777654

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=94.36  E-value=0.57  Score=39.42  Aligned_cols=122  Identities=9%  Similarity=-0.029  Sum_probs=80.2

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGID  126 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~  126 (311)
                      =+++|...|+.    .|+.++++|+|.|=+.-+  ...+ -.|+-+.+--+.+.+..-.++|++...-+ +.+-+..+..
T Consensus        16 ki~~lTayd~~----~A~~ae~agiDiilVGDS--lgm~-~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy   88 (260)
T d1o66a_          16 KIAMLTAYESS----FAALMDDAGVEMLLVGDS--LGMA-VQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAY   88 (260)
T ss_dssp             CEEEEECCSHH----HHHHHHHTTCCEEEECTT--HHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSS
T ss_pred             cEEEEeCCCHH----HHHHHHHcCCCEEEEcCC--chhe-ecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhh
Confidence            36788888844    466788999999877421  1111 12344555556677777788888876443 5555655443


Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         127 DINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       127 ~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      . .+.+...+-+..+.+.|+|++-+.|...                ..+.|+.+.+.  .|||++-=|.
T Consensus        89 ~-~~~~~~~~a~~~~~~~gadavk~eg~~~----------------~~~~i~~l~~~--gIPV~gHiGl  138 (260)
T d1o66a_          89 Q-QSKEQAFAAAAELMAAGAHMVKLEGGVW----------------MAETTEFLQMR--GIPVCAHIGL  138 (260)
T ss_dssp             S-SCHHHHHHHHHHHHHTTCSEEEEECSGG----------------GHHHHHHHHHT--TCCEEEEEES
T ss_pred             c-chhHHHHHHHHHHHHhhhhhccccchhh----------------hhHHHHHHHHc--CCeeEeeccc
Confidence            3 3344566777778889999998876642                45778888886  6999875433

>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.25  E-value=0.29  Score=41.87  Aligned_cols=136  Identities=16%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             CeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc---------cc
Q psy2386          47 PIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV---------EI  115 (311)
Q Consensus        47 p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~---------~~  115 (311)
                      .+++=|+  ..+++.+.    .+.++|.|.+-|||+.-               +++...++++.+|+..         -.
T Consensus        34 KIIaTiGPas~~~e~l~----~Li~aGvnv~RiN~SHg---------------~~e~h~~~i~~iR~~~~~~~~~~il~~   94 (282)
T d2g50a2          34 GIICTIGPASRSVETLK----EMIKSGMNVARMNFSHG---------------THEYHAETIKNVRTATESFASDPILYR   94 (282)
T ss_dssp             EEEEECSTTTCSHHHHH----HHHHHTCCEEEEETTSS---------------CHHHHHHHHHHHHHHHHTTTTCTTTCC
T ss_pred             cEEEEeCCCCCCHHHHH----HHHHcCCCEEEEeCCCC---------------CHHHHHHHHHHHHHHHHHhCCCceecc
Confidence            4677774  34566553    34467999999998763               2455555666555542         23


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEec
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIING  193 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nG  193 (311)
                      |+.+..-.....-.+ .+ .+-++...+.|+|++.+. -|+.               .|...++++.+.. ++++|++- 
T Consensus        95 ~~~I~~d~~~~~l~~-~d-i~di~~a~~~~vD~ialSFVrs~---------------~DI~~~r~~l~~~g~~~~IiaK-  156 (282)
T d2g50a2          95 PVAVALDTKGPAVSE-KD-IQDLKFGVEQDVDMVFASFIRKA---------------ADVHEVRKILGEKGKNIKIISK-  156 (282)
T ss_dssp             CCEEEEECCCCSSCH-HH-HHHHHHHHHTTCSEEEETTCCSH---------------HHHHHHHHHHTTTTTTSEEEEE-
T ss_pred             ccccccccccccccc-hH-HHHHHHhhhccccceeecccCCH---------------HHHHHHHHHHHHcCCCceEEEe-
Confidence            666654433222211 12 334566688999999885 4432               2555565555432 35666662 


Q ss_pred             CCCCHHHH---HHHHhhcCEEEEehhhhhC
Q psy2386         194 GIKTKKEI---DLHLNYIDGVMLGREAYKN  220 (311)
Q Consensus       194 gI~s~~da---~~~l~~adgVmigRa~l~~  220 (311)
                       |.+.+-+   .+.+..+|||||+||=++-
T Consensus       157 -IE~~~al~NldeIi~~sDgIMIaRGDLg~  185 (282)
T d2g50a2         157 -IENHEGVRRFDEILEASDGIMVARGDLGI  185 (282)
T ss_dssp             -ECSHHHHHTHHHHHHHSSEEEEEHHHHHH
T ss_pred             -ecchhhhhcchhhccccceeeeecccccc
Confidence             4443333   3444459999999997643

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.18  E-value=1.3  Score=37.14  Aligned_cols=149  Identities=13%  Similarity=0.094  Sum_probs=93.5

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEe
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHR  122 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR  122 (311)
                      +...++++.+++.+.++..+.++.+++.|+|++-+-  .|....         --+.+-+.+-.++|.+++++|+.+=-.
T Consensus        63 ~~~~~~i~gv~~~st~~~i~~a~~a~~~Ga~~~~~~--~P~~~~---------~~~~~~i~~~f~~Ia~a~~~pi~lYn~  131 (293)
T d1w3ia_          63 DVTNKIIFQVGGLNLDDAIRLAKLSKDFDIVGIASY--APYYYP---------RMSEKHLVKYFKTLCEVSPHPVYLYNY  131 (293)
T ss_dssp             TTCSCEEEECCCSCHHHHHHHHHHGGGSCCSEEEEE--CCCSCS---------SCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred             hhccccccccccchhhhhhhhhhhhhhhcccccccc--ccchhc---------cchHHHHHHHHHHHHHhhccceeeecc
Confidence            335679999999999999999999999999998764  443210         123455677788888888999888543


Q ss_pred             c---cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHH
Q psy2386         123 I---GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKK  199 (311)
Q Consensus       123 ~---g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~  199 (311)
                      .   |.+-.      .++++.+  ..+.+|-    .   .           ..|+..+.++++..+++.|+...|-    
T Consensus       132 P~~~g~~l~------~~~~~~l--~ni~giK----~---s-----------s~d~~~~~~~~~~~~~~~v~~G~d~----  181 (293)
T d1w3ia_         132 PTATGKDID------AKVAKEI--GCFTGVK----D---T-----------IENIIHTLDYKRLNPNMLVYSGSDM----  181 (293)
T ss_dssp             HHHHSCCCC------HHHHHHH--CCEEEEE----E---C-----------CSCHHHHHHHHHHCTTSEEEECCST----
T ss_pred             ccccccccc------hhhHHhh--hhhhccc----c---c-----------cccHHHHHHHHhhccceeccccccc----
Confidence            3   33221      2444433  1111111    0   0           0367777777776666766543332    


Q ss_pred             HHHHHHh-hcCEEEEehhhhhCCcchHHhHhhhcc
Q psy2386         200 EIDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYYS  233 (311)
Q Consensus       200 da~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~~  233 (311)
                      .+...+. +++|.+.|-+.+ -|.++.++.+.+..
T Consensus       182 ~~~~~~~~Ga~G~is~~~n~-~P~~~~~l~~~~~~  215 (293)
T d1w3ia_         182 LIATVASTGLDGNVAAGSNY-LPEVTVTIKKLAME  215 (293)
T ss_dssp             THHHHHHTTCCEEECGGGGT-CHHHHHHHHHHHHT
T ss_pred             chhhhhccCCceeeecccch-hhhhhhhHHHHHHh
Confidence            2334444 499999987764 57777777765543

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.1  Score=44.53  Aligned_cols=125  Identities=11%  Similarity=-0.002  Sum_probs=74.1

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~  132 (311)
                      =|.+.+.+-++.+.+.|+++|=++-.          .|-...-..+.=.++++.+.+.+  .+||.+-+-  ..   +.+
T Consensus        19 iD~~~~~~~i~~l~~~Gv~Gl~~~Gs----------tGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~--~~---s~~   83 (292)
T d2a6na1          19 VCRASLKKLIDYHVASGTSAIVSVGT----------TGESATLNHDEHADVVMMTLDLADGRIPVIAGTG--AN---ATA   83 (292)
T ss_dssp             BCHHHHHHHHHHHHHHTCCEEEESST----------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECC--CS---SHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECee----------ccchhhCCHHHHHHHhhhhhhhccccceeEeecc--cc---hHH
Confidence            47888999999998899999988722          23333223333345555555544  467777432  22   234


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE-Ee-----cCCCCHHHHHHH
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII-IN-----GGIKTKKEIDLH  204 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi-~n-----GgI~s~~da~~~  204 (311)
                      +.+++++.+++.|++++.+.+-.  +...+.       ..-+++.+++.++. ++||+ .|     |--.|++...++
T Consensus        84 ~~i~~~~~a~~~Gad~~~~~pP~--~~~~~~-------~~i~~~f~~v~~~~-~~pi~iYn~P~~~g~~~~~e~~~~L  151 (292)
T d2a6na1          84 EAISLTQRFNDSGIVGCLTVTPY--YNRPSQ-------EGLYQHFKAIAEHT-DLPQILYNVPSATGCDLLPETVGRL  151 (292)
T ss_dssp             HHHHHHHTTTTSSCCEEEEECCC--SSCCCH-------HHHHHHHHHHHHTC-SSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHhccHHhcCCcceeccCCC--CCCCCH-------HHHHHHHHHHhhcc-CCcEEEEEeccccCCccCHHHHHHH
Confidence            67899999999999999887532  111110       01245566666665 56753 33     223455555554

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.058  Score=45.98  Aligned_cols=135  Identities=19%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             CeEEEec--CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc----cceeEEE
Q psy2386          47 PIAFQVG--DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV----EIDITVK  120 (311)
Q Consensus        47 p~~~Ql~--g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~----~~pvsvK  120 (311)
                      .+|+=|+  ..+++.+    +.+.++|.|.+-|||+.-.               ++...++++.+|+..    +.||.+-
T Consensus        22 KIIaTiGPas~~~e~l----~~li~aG~dv~RlN~SHg~---------------~~~h~~~i~~iR~~~e~~~G~~v~i~   82 (265)
T d1a3xa2          22 SIIGTIGPKTNNPETL----VALRKAGLNIVRMNFSHGS---------------YEYHKSVIDNARKSEELYPGRPLAIA   82 (265)
T ss_dssp             EEEEECCTTTCSHHHH----HHHHHHTEEEEEEETTSCC---------------HHHHHHHHHHHHHHHHHCCCSCCBCE
T ss_pred             eEEEeeCCCCCCHHHH----HHHHHcCCCEEEEECCCCC---------------HHHHHHHHHHHHHHhhhccCCceeee
Confidence            4666664  3456655    3455679999999987632               344556666665432    5665554


Q ss_pred             EeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe-cCccccccCCCCcCCCCCcCcHHHHHHHHHh-CCCCeEEEecCCCCH
Q psy2386         121 HRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH-ARNAFLKKLNPKQNRKIPILKYNFVYNLKKD-FPELEIIINGGIKTK  198 (311)
Q Consensus       121 iR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh-~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~-~~~ipvi~nGgI~s~  198 (311)
                      +.+....-.+. + .+-++...+.|+|++.+. -|++               .|...++++... .++++||+  -|.+.
T Consensus        83 ~dl~~p~ltek-D-~~di~~a~~~~vD~ialSFVrs~---------------~Di~~~r~~l~~~~~~~~Iia--KIE~~  143 (265)
T d1a3xa2          83 LDTKGPALSEK-D-KEDLRFGVKNGVHMVFASFIRTA---------------NDVLTIREVLGEQGKDVKIIV--KIENQ  143 (265)
T ss_dssp             EECCCCSSCHH-H-HHHHHHHHHTTCCEECCTTCCSH---------------HHHHHHHHHHCGGGTTSCCEE--EECSH
T ss_pred             ccccchhcccc-h-HHHHHHhhhcccceEeeccCCCH---------------HHHHHHHHHHHHhcCCCeEEe--eccch
Confidence            44322222211 1 334556689999999775 3432               255556555432 13466655  34444


Q ss_pred             HHH---HHHHhhcCEEEEehhhhh
Q psy2386         199 KEI---DLHLNYIDGVMLGREAYK  219 (311)
Q Consensus       199 ~da---~~~l~~adgVmigRa~l~  219 (311)
                      +-+   .+.++.+|||||+||=++
T Consensus       144 ~al~NldeIi~~sDgimIaRGDLg  167 (265)
T d1a3xa2         144 QGVNNFDEILKVTDGVMVARGDLG  167 (265)
T ss_dssp             HHHTTHHHHHHHCSEEEEEHHHHH
T ss_pred             HHHhChHHHHhhcceeEEEccchh
Confidence            433   334445999999999754

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=93.88  E-value=1.7  Score=37.22  Aligned_cols=117  Identities=9%  Similarity=0.105  Sum_probs=69.3

Q ss_pred             ccCChHHHHHHHHHHhccccceeEEEEe-cc-CCCC-------CcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCc
Q psy2386          95 LMTKPLLVSDCIKAMRDSVEIDITVKHR-IG-IDDI-------NSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQ  165 (311)
Q Consensus        95 Ll~~~~~~~~iv~~v~~~~~~pvsvKiR-~g-~~~~-------~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~  165 (311)
                      +.+|-+...++++..+.. +++|-+-+- +| ..++       ..+-+..+..+.+++.|+|.|.+.=.|. -+-|.++ 
T Consensus       108 ~eeNi~~Tk~vv~~Ah~~-gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~-HG~Yk~~-  184 (305)
T d1rvga_         108 FETNVRETRRVVEAAHAV-GVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTS-HGAYKGK-  184 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCC-SSSBCSS-
T ss_pred             HHHHHHHHHHHHHHhchh-ceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhh-hcccCCC-
Confidence            345667777887776653 666655442 21 1110       0011233444445789999998754442 1112221 


Q ss_pred             CCCCCcCcHHHHHHHHHhCCCCeEEEecCC----------------------CCHHHHHHHHhh-cCEEEEehhh
Q psy2386         166 NRKIPILKYNFVYNLKKDFPELEIIINGGI----------------------KTKKEIDLHLNY-IDGVMLGREA  217 (311)
Q Consensus       166 ~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI----------------------~s~~da~~~l~~-adgVmigRa~  217 (311)
                        ..+..|++.+++|++.+ ++|++.-|+=                      .+.+++++++.. +.-|=|++.+
T Consensus       185 --~~~~l~~~~l~~I~~~~-~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiNi~T~l  256 (305)
T d1rvga_         185 --GRPFIDHARLERIARLV-PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTDL  256 (305)
T ss_dssp             --SSCCCCHHHHHHHHHHC-CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHHH
T ss_pred             --CcccchHHHHHHHHhcc-CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEEeChHH
Confidence              12347999999999998 7999998865                      235666666665 6666666654

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=93.65  E-value=0.77  Score=38.26  Aligned_cols=77  Identities=22%  Similarity=0.218  Sum_probs=47.6

Q ss_pred             HHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccC-C---CCCcHHHHHHHHH
Q psy2386          64 AKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGI-D---DINSYDFVRDFVG  139 (311)
Q Consensus        64 a~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~-~---~~~~~~~~~e~~~  139 (311)
                      |..+++.|+|-|||+-.     -.-+    .|--.+.+    ++.+++.+++||.|=||+-. +   ++.+.+...+-++
T Consensus        13 a~~A~~~GAdRIELc~~-----l~~G----GlTPS~g~----i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~   79 (247)
T d1twda_          13 ALTAQQNGADRVELCAA-----PKEG----GLTPSLGV----LKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVR   79 (247)
T ss_dssp             HHHHHHTTCSEEEECBC-----GGGT----CBCCCHHH----HHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEcCC-----cccC----CCCCCHHH----HHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence            44566899999999721     0111    12223333    44555667999998888621 1   2223445556677


Q ss_pred             HHHHcCCCEEEEec
Q psy2386         140 TVSSAGCRTFIVHA  153 (311)
Q Consensus       140 ~l~~~G~~~itvh~  153 (311)
                      .+.+.|++.|.+-.
T Consensus        80 ~~k~~G~dGvV~G~   93 (247)
T d1twda_          80 TVRELGFPGLVTGV   93 (247)
T ss_dssp             HHHHTTCSEEEECC
T ss_pred             HHHHcCCCeEEEEE
Confidence            88899999998743

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.45  E-value=1.9  Score=36.30  Aligned_cols=152  Identities=10%  Similarity=-0.015  Sum_probs=94.3

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .....|+++++++.+.++..+-|+.+++.|+|+|-+-  -|...          --+.+-+.+-.+++.+++++||.+=-
T Consensus        73 ~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Gad~v~i~--~P~~~----------~~~~~~l~~~~~~v~~~~~~pi~lYn  140 (296)
T d1xxxa1          73 VGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVV--TPYYS----------KPPQRGLQAHFTAVADATELPMLLYD  140 (296)
T ss_dssp             HTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEE--CCCSS----------CCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred             hccccceEeccccchhHHHHHHHHHHHHhcCCeEEEE--eccCC----------CCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            4556899999999999999999999999999999774  34321          12346677888888888999998854


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHH
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKE  200 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~d  200 (311)
                      ..++.....   ..++++.+.+.+ +.+|.-.  +                .|+..+.+....- .+-++..+|    +-
T Consensus       141 ~p~~~g~~~---~~~~~~~L~~~p~i~giK~~--s----------------~d~~~~~~~~~~~-~~~~~~g~~----~~  194 (296)
T d1xxxa1         141 IPGRSAVPI---EPDTIRALASHPNIVGVKDA--K----------------ADLHSGAQIMADT-GLAYYSGDD----AL  194 (296)
T ss_dssp             CHHHHSSCC---CHHHHHHHHTSTTEEEEEEC--S----------------CCHHHHHHHHHHH-CCEEEECSG----GG
T ss_pred             CccccCCCC---CHHHHHHhcCCCCeeeeccc--c----------------ccHHHHHhhhccc-ccccccCcc----cc
Confidence            332221111   146667776543 2222110  0                2566555554442 344443322    12


Q ss_pred             HHHHHh-hcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         201 IDLHLN-YIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       201 a~~~l~-~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                      +...+. +|+|.+.|-+.+. |..+.++-+.+.
T Consensus       195 ~~~~~~~G~~G~is~~~n~~-P~~~~~i~~~~~  226 (296)
T d1xxxa1         195 NLPWLAMGATGFISVIAHLA-AGQLRELLSAFG  226 (296)
T ss_dssp             HHHHHHHTCCEEEESTHHHH-HHHHHHHHHHHH
T ss_pred             cchhhhcccccccchhccch-hHHHHHHHhhcc
Confidence            333443 4999999987644 666666655443

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.40  E-value=0.3  Score=40.34  Aligned_cols=118  Identities=10%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             CCeEEEecCCCHHHH-----HHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEE
Q psy2386          46 HPIAFQVGDNEPKKL-----AKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVK  120 (311)
Q Consensus        46 ~p~~~Ql~g~~~~~~-----~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvK  120 (311)
                      .|+.||+.+-..+..     .+..+.+.++|||+|||...              +..++..+.++-+.+.+ .++.++.=
T Consensus         2 ~p~~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~~~--------------~~~~~~~~~~l~~~~~~-~GL~i~~~   66 (250)
T d1yx1a1           2 HPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREE--------------LFAGPPDTEALTAAIQL-QGLECVFS   66 (250)
T ss_dssp             CCEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGG--------------GCSSCCCHHHHHHHHHH-TTCEEEEE
T ss_pred             CCEEEEhhhcccccccccCHHHHHHHHHHhCCCEEEEecc--------------cCCCcchHHHHHHHHHH-cCCEEEEe
Confidence            589999987664432     23356778999999999411              12233334444444433 46655321


Q ss_pred             E--eccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         121 H--RIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       121 i--R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                      .  ..........+.+...+..+.+.|+..|.++.....            ...+++.+.+..+.. .+.+..
T Consensus        67 ~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v~~~~g~~~------------~~~~l~~l~~~a~~~-Gv~l~i  126 (250)
T d1yx1a1          67 SPLELWREDGQLNPELEPTLRRAEACGAGWLKVSLGLLP------------EQPDLAALGRRLARH-GLQLLV  126 (250)
T ss_dssp             EEEEEECTTSSBCTTHHHHHHHHHHTTCSEEEEEEECCC------------SSCCHHHHHHHHTTS-SCEEEE
T ss_pred             cccccccCchhhHHHHHHHHHHHHHhCCCEEEEeecccc------------hhHHHHHHHHHHHHc-CCEEEE
Confidence            1  111111111224567777788999999998754310            013466666666665 565543

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=2.1  Score=35.89  Aligned_cols=150  Identities=13%  Similarity=0.098  Sum_probs=90.6

Q ss_pred             CCCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhc-cccceeEEE
Q psy2386          42 NAEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRD-SVEIDITVK  120 (311)
Q Consensus        42 ~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~-~~~~pvsvK  120 (311)
                      .....|+++.+.+.+.++..+-|+.+++.|+|++-+-  .|....          ...+-+.+-..++.+ ..+.|+.+-
T Consensus        68 ~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad~~~v~--~p~~~~----------~~~~~~~~~~~~~~~~~~~~~ii~y  135 (295)
T d1hl2a_          68 AKGKIKLIAHVGCVSTAESQQLAASAKRYGFDAVSAV--TPFYYP----------FSFEEHCDHYRAIIDSADGLPMVVY  135 (295)
T ss_dssp             HTTTSEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEE--CCCSSC----------CCHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred             hccccceeeccccchhhHHHHHHHHHHhcCCceeeee--eccccC----------CChHHHHHHHHHHhcccCcCccccc
Confidence            4556799999999999999999999999999999885  343210          123333333333333 346788775


Q ss_pred             Ee---ccCCCCCcHHHHHHHHHHHHHc-CCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCC
Q psy2386         121 HR---IGIDDINSYDFVRDFVGTVSSA-GCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIK  196 (311)
Q Consensus       121 iR---~g~~~~~~~~~~~e~~~~l~~~-G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~  196 (311)
                      --   .|.+-      ..+++.+|.+. .+.++...+                  .|+..+.+++...+++.|+..+| .
T Consensus       136 ~~P~~~g~~l------~~~~l~~L~~~pnvvgiK~~~------------------~~~~~~~~~~~~~~~~~v~~g~~-~  190 (295)
T d1hl2a_         136 NIPARSGVKL------TLDQINTLVTLPGVGALKQTS------------------GDLYQMEQIRREHPDLVLYNGYD-E  190 (295)
T ss_dssp             ECHHHHCCCC------CHHHHHHHHTSTTEEEEEECC------------------CCHHHHHHHHHHCTTCEEEECCG-G
T ss_pred             cccccccccc------ccccccccccCcchhhhcccc------------------ccHHHHHHHhhcCCCceEecccH-H
Confidence            42   33222      13566666553 122332111                  25556677777776666554433 2


Q ss_pred             CHHHHHHHH-hhcCEEEEehhhhhCCcchHHhHhhhc
Q psy2386         197 TKKEIDLHL-NYIDGVMLGREAYKNPFLMSNFDLNYY  232 (311)
Q Consensus       197 s~~da~~~l-~~adgVmigRa~l~~P~i~~~~~~~~~  232 (311)
                         .+...+ .+|+|++.|-+.+- |.++.++.+.+.
T Consensus       191 ---~~~~~~~~G~~G~is~~~n~~-p~~~~~i~~~~~  223 (295)
T d1hl2a_         191 ---IFASGLLAGADGGIGSTYNIM-GWRYQGIVKALK  223 (295)
T ss_dssp             ---GHHHHHHHTCCEEEETTHHHH-HHHHHHHHHHHH
T ss_pred             ---HHhhhhccCCCceeccchhcc-chhhHHHHHhhh
Confidence               223333 34999999987544 777777766544

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.10  E-value=0.92  Score=38.10  Aligned_cols=121  Identities=7%  Similarity=0.025  Sum_probs=75.3

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~  127 (311)
                      +++|-..|..    .|+++.++|+|.|=+.  =...++.. |+-+.+-=..+.+..-.++|++...-+ +.+-+..+...
T Consensus        19 i~~lTaYD~~----~A~~~~~agiDiiLVG--DSlgmv~~-G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~   91 (262)
T d1oy0a_          19 WAMLTAYDYS----TARIFDEAGIPVLLVG--DSAANVVY-GYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYE   91 (262)
T ss_dssp             EEEEECCSHH----HHHHHHTTTCCEEEEC--TTHHHHTT-CCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSST
T ss_pred             EEEEeCCCHH----HHHHHHHcCCCEEEEc--Cchhhhhc-CCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcc
Confidence            6778888854    4677889999988663  22222222 233344445566666677777766433 45555554333


Q ss_pred             CCcHHHHHHHH-HHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         128 INSYDFVRDFV-GTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       128 ~~~~~~~~e~~-~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      .+ .+....-+ +.+.+.|++++.+.|...                ..+.|+.+.+.  .|||++-=|+
T Consensus        92 ~s-~~~a~~nA~r~~~~~ga~avkleg~~~----------------~~~~I~~L~~~--gIPV~gHiGL  141 (262)
T d1oy0a_          92 AG-PTAALAAATRFLKDGGAHAVKLEGGER----------------VAEQIACLTAA--GIPVMAHIGF  141 (262)
T ss_dssp             TC-HHHHHHHHHHHHHTTCCSEEEEEBSGG----------------GHHHHHHHHHH--TCCEEEEEEC
T ss_pred             cc-hHHHHHHHHHHHhccccceeeechhhh----------------hHHHHHHHHhc--CCceEEeeee
Confidence            32 23344444 456689999999987642                45788888887  5888775443

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.03  E-value=0.54  Score=39.65  Aligned_cols=76  Identities=13%  Similarity=0.138  Sum_probs=51.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~  132 (311)
                      +++...+-|+.+.+.|+|.|||..-.--|       |+...   ...+.+.-+++.+++ .++++||-.+-         
T Consensus        24 ~~~~a~~~~~~m~~~GAdiIDIGaeSTrP-------ga~~is~~eE~~Rl~pvi~~l~~-~~~~iSIDT~~---------   86 (264)
T d1ad1a_          24 NVESAVTRVKAMMDEGADIIDVGGVSTRP-------GHEMITVEEELNRVLPVVEAIVG-FDVKISVDTFR---------   86 (264)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEESCCCST-------TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC---------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCC-------CCCcCCHHHHHHhhhhHhhhhcc-cCcccchhhhh---------
Confidence            67777777777777899999998443322       33322   234566677777765 47888886653         


Q ss_pred             HHHHHHHHHHHcCCCEEE
Q psy2386         133 FVRDFVGTVSSAGCRTFI  150 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~it  150 (311)
                        .+.++.+.++|++.|-
T Consensus        87 --~eVa~~al~~Ga~iIN  102 (264)
T d1ad1a_          87 --SEVAEACLKLGVDIIN  102 (264)
T ss_dssp             --HHHHHHHHHTTCCEEE
T ss_pred             --HHHHHHHHhcCCcEee
Confidence              3667777888888775

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=92.95  E-value=0.83  Score=36.54  Aligned_cols=146  Identities=13%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             EEecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC
Q psy2386          50 FQVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI  128 (311)
Q Consensus        50 ~Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~  128 (311)
                      +.|||- ++++    |+.+.++|+|.+=+++--+++.-          =+++.+.+|++.+...+ .+|.|=..      
T Consensus         3 iKICGit~~ed----~~~~~~~gad~iGfif~~~SpR~----------vs~~~a~~i~~~~~~~~-~~V~Vf~~------   61 (200)
T d1v5xa_           3 VKICGITRLED----ALLAEALGAFALGFVLAPGSRRR----------IAPEAARAIGEALGPFV-VRVGVFRD------   61 (200)
T ss_dssp             EEECCCCCHHH----HHHHHHHTCSEEEEECCTTCTTB----------CCHHHHHHHHHHSCSSS-EEEEEESS------
T ss_pred             EEEcCCCcHHH----HHHHHhCCCCEEEEEcCCCCCCC----------cCHHHHHHHHHhhcCce-eeeeeeee------
Confidence            567775 4554    34555789999999984334321          25788888887765532 33433211      


Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEecCccc-----c-cc-------------------CC-------CCcCCCCCcCcHHH
Q psy2386         129 NSYDFVRDFVGTVSSAGCRTFIVHARNAF-----L-KK-------------------LN-------PKQNRKIPILKYNF  176 (311)
Q Consensus       129 ~~~~~~~e~~~~l~~~G~~~itvh~Rt~~-----~-~G-------------------~~-------g~~~~~~~~~~~~~  176 (311)
                      .+   ..++.+.+.+.+.+.+.+||....     . ..                   +.       .+....-...+|++
T Consensus        62 ~~---~~~i~~~~~~~~~d~vQlHg~e~~~~~~~l~~~~~iik~~~~~~~~~~~~~~~~~~~~L~D~~~~g~g~~~~~~~  138 (200)
T d1v5xa_          62 QP---PEEVLRLMEEARLQVAQLHGEEPPEWAEAVGRFYPVIKAFPLEGPARPEWADYPAQALLLDGKRPGSGEAYPRAW  138 (200)
T ss_dssp             CC---HHHHHHHHHHTTCSEEEECSCCCHHHHHHHTTTSCEEEEEECSSSCCGGGGGSSCSEEEEECSSTTSCCCCCGGG
T ss_pred             ch---hhhhhhhhcccccccccccccCCHHHHHHHhhccccceeeccCchhhHHHhhcchhheeecccccCcccccchHH
Confidence            11   245667788999999999976310     0 00                   00       00001112246666


Q ss_pred             HHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         177 VYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       177 i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ...+...  ..|++..|||. ++.+.+++.. +.||=+.+|+=..|-
T Consensus       139 ~~~~~~~--~~~~~LAGGl~-~~Nv~~~~~~~p~gvDvsSGvE~~~G  182 (200)
T d1v5xa_         139 AKPLLAT--GRRVILAGGIA-PENLEEVLALRPYALDLASGVEEAPG  182 (200)
T ss_dssp             GHHHHHT--TSCEEECSSCC-STTHHHHHHHCCSEEEESGGGEEETT
T ss_pred             Hhhhhhc--cCceEecCCCC-HHHHHHHHhcCCCEEEEcCceECCCC
Confidence            5555443  47999999998 4556666654 889999988844443

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=92.95  E-value=1.6  Score=35.67  Aligned_cols=140  Identities=11%  Similarity=0.195  Sum_probs=79.9

Q ss_pred             CCeEEEec-CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-----cceeEE
Q psy2386          46 HPIAFQVG-DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-----EIDITV  119 (311)
Q Consensus        46 ~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-----~~pvsv  119 (311)
                      .+++.=+- ..-|.....+++.+.++|+|.+.+|..+.                ++-+..+++.+++..     ...+..
T Consensus        55 ~~IflD~K~~DIgnTv~~~~~~~~~~~~d~vtvh~~~G----------------~~~i~aa~~~~~~~~~~~~~~~~l~~  118 (237)
T d1dbta_          55 CELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAAGG----------------KKMMQAALEGLEEGTPAGKKRPSLIA  118 (237)
T ss_dssp             CEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGGGC----------------HHHHHHHHHHHHHHSCTTSCCCEEEE
T ss_pred             hheehhhhhccCchHHHHHHHhhhccccceEEeecccc----------------hHHHHHHHHhhhhcchhccccceeEE
Confidence            45555543 33467777788878888999999994443                344555555555432     122222


Q ss_pred             EEec------------cCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCC
Q psy2386         120 KHRI------------GIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPEL  187 (311)
Q Consensus       120 KiR~------------g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~i  187 (311)
                      -+-+            +++. ...+....+++...+.|++.+..++..                     +..+++...+-
T Consensus       119 v~~lts~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~g~~g~v~s~~~---------------------~~~~r~~~~~~  176 (237)
T d1dbta_         119 VTQLTSTSEQIMKDELLIEK-SLIDTVVHYSKQAEESGLDGVVCSVHE---------------------AKAIYQAVSPS  176 (237)
T ss_dssp             ECSCTTCCHHHHHHTSCBCS-CHHHHHHHHHHHHHHTTCSEEECCGGG---------------------HHHHTTTSCTT
T ss_pred             EecccccchHHHHhhhhhhc-ccchhhHHHHHhhhhcCcceeecchhh---------------------hhhhccccccc
Confidence            2111            1111 112234566777788999988765432                     33444443233


Q ss_pred             eEEEecCCC-------------CHHHHHHHHhhcCEEEEehhhhhCCcchH
Q psy2386         188 EIIINGGIK-------------TKKEIDLHLNYIDGVMLGREAYKNPFLMS  225 (311)
Q Consensus       188 pvi~nGgI~-------------s~~da~~~l~~adgVmigRa~l~~P~i~~  225 (311)
                      .++...||+             ||.++.+  .++|.+.|||+.+.-+.-.+
T Consensus       177 ~~ivtPGI~~~~~~~~dq~r~~tp~~a~~--~GaD~iIVGR~I~~s~dP~~  225 (237)
T d1dbta_         177 FLTVTPGIRMSEDAANDQVRVATPAIARE--KGSSAIVVGRSITKAEDPVK  225 (237)
T ss_dssp             CEEEECCBCCTTSCCTTCSSCBCHHHHHH--TTCSEEEECHHHHTSSCHHH
T ss_pred             eeEeccccccCCCCCCCceeeCCHHHHHH--cCCCEEEECCcccCCCCHHH
Confidence            455555553             4555443  34999999999987555443

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=92.88  E-value=1.5  Score=35.63  Aligned_cols=145  Identities=12%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEe
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHR  122 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR  122 (311)
                      +.+++.=+--.| |.....+++.+.++|+|.+-+|..++                ++-+..++++..+.- +.++.+-+.
T Consensus        54 ~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g----------------~~~l~~~~~~~~~~~~~~~~~~~v~  117 (231)
T d1eixa_          54 GFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGG----------------ARMMTAAREALVPFGKDAPLLIAVT  117 (231)
T ss_dssp             TCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGC----------------HHHHHHHHHTTGGGGGGCCEEEEEC
T ss_pred             CchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCc----------------HHHHHHHHHhhhhcCccceEEEEEe
Confidence            445666554444 67788888888889999999994333                344555555554321 223322222


Q ss_pred             --ccCCC---------CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE
Q psy2386         123 --IGIDD---------INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII  191 (311)
Q Consensus       123 --~g~~~---------~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~  191 (311)
                        ..++.         .........++....+.|++.+..++..                     +..+++....-.++.
T Consensus       118 ~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~  176 (231)
T d1eixa_         118 VLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE---------------------AVRFKQVFGQEFKLV  176 (231)
T ss_dssp             SCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG---------------------HHHHHHHHCSSSEEE
T ss_pred             eccccccchhcccccccchhHHHHHHHHHHHHhccccccccchh---------------------hhhhhhhcCCcccee
Confidence              22211         1111223456777888999888665432                     233333332335666


Q ss_pred             ecCCC-------------CHHHHHHHHhhcCEEEEehhhhhCCcchHHhH
Q psy2386         192 NGGIK-------------TKKEIDLHLNYIDGVMLGREAYKNPFLMSNFD  228 (311)
Q Consensus       192 nGgI~-------------s~~da~~~l~~adgVmigRa~l~~P~i~~~~~  228 (311)
                      .+||+             ||++|.+  ..+|.++|||+.+..+.-...++
T Consensus       177 tPGI~~~~~~~~dq~r~~tp~~Ai~--~GaD~iIVGR~It~a~dP~~aa~  224 (231)
T d1eixa_         177 TPGIRPQGSEAGDQRRIMTPEQALS--AGVDYMVIGRPVTQSVDPAQTLK  224 (231)
T ss_dssp             ECCBCCTTCCCTTCCSCBCHHHHHH--TTCSEEEECHHHHTSSSHHHHHH
T ss_pred             cCCcccCCCCccCccccCCHHHHHH--cCCCEEEECCcccCCCCHHHHHH
Confidence            66654             4555543  34999999999988666544443

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.87  E-value=0.16  Score=41.42  Aligned_cols=109  Identities=9%  Similarity=-0.014  Sum_probs=71.4

Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      |+..=+|..     +.++..++++.+.+.|+..+-|.-|+.               .-++.|+++++....--+++.|-|
T Consensus        10 ~iipvlr~~-----~~~~a~~~~~al~~~Gi~~iEitlr~p---------------~a~~~i~~l~~~~~~~~~vGaGTV   69 (202)
T d1wa3a1          10 KIVAVLRAN-----SVEEAKEKALAVFEGGVHLIEITFTVP---------------DADTVIKELSFLKEKGAIIGAGTV   69 (202)
T ss_dssp             CEEEEECCS-----SHHHHHHHHHHHHHTTCCEEEEETTST---------------THHHHHHHTHHHHHTTCEEEEESC
T ss_pred             CEEEEEECC-----CHHHHHHHHHHHHHcCCCEEEEecCCc---------------cHHHHHHHHHHhcCCCcEEEeccc
Confidence            444446753     134678999999999999999988863               246778887754312347999999


Q ss_pred             CCHHHHHHHHhh-cCEEEEehhhhhCCcchHHhHhhhccCCCCCCCCCHHHHHHH
Q psy2386         196 KTKKEIDLHLNY-IDGVMLGREAYKNPFLMSNFDLNYYSNLPQYKIPTRIDIINR  249 (311)
Q Consensus       196 ~s~~da~~~l~~-adgVmigRa~l~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (311)
                      .|.+++++.++. |+.++.  . --+|.+.+...+.  +-...+-..|+.|+...
T Consensus        70 ~~~~~~~~a~~aGa~fivs--P-~~~~~v~~~~~~~--~i~~iPGv~TpsEi~~A  119 (202)
T d1wa3a1          70 TSVEQCRKAVESGAEFIVS--P-HLDEEISQFCKEK--GVFYMPGVMTPTELVKA  119 (202)
T ss_dssp             CSHHHHHHHHHHTCSEEEC--S-SCCHHHHHHHHHH--TCEEECEECSHHHHHHH
T ss_pred             ccHHHHHHHHhhcccEEeC--C-CCcHHHHHHHHhc--CCceeCCcCcHHHHHHH
Confidence            999999999987 998862  1 1245555544432  11101123467776654

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: 2-keto-3-deoxy gluconate aldolase Eda
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.72  E-value=0.44  Score=40.36  Aligned_cols=111  Identities=14%  Similarity=0.055  Sum_probs=70.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHH
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFV  134 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~  134 (311)
                      =|.+.+.+-++.+.+.|+++|=+|.          ..|-...-+++.=.++++.+.+.. .|+.+-    .... +.++.
T Consensus        17 iD~~~~~~~i~~l~~~Gv~gi~~~G----------ttGE~~~Ls~~Er~~~~~~~~~~~-~~~i~g----v~~~-st~~~   80 (293)
T d1w3ia_          17 IDKEKLKIHAENLIRKGIDKLFVNG----------TTGLGPSLSPEEKLENLKAVYDVT-NKIIFQ----VGGL-NLDDA   80 (293)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEESS----------TTTTGGGSCHHHHHHHHHHHHTTC-SCEEEE----CCCS-CHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECe----------echhhhhCCHHHHHHHHHHHHhhc-cccccc----cccc-hhhhh
Confidence            3778899999999899999998872          233434444444467888777754 354432    2222 23467


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEII  190 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi  190 (311)
                      +++++.+++.|++++.+.+-.. +...+       ...-+++.+++.++. ++||+
T Consensus        81 i~~a~~a~~~Ga~~~~~~~P~~-~~~~~-------~~~i~~~f~~Ia~a~-~~pi~  127 (293)
T d1w3ia_          81 IRLAKLSKDFDIVGIASYAPYY-YPRMS-------EKHLVKYFKTLCEVS-PHPVY  127 (293)
T ss_dssp             HHHHHHGGGSCCSEEEEECCCS-CSSCC-------HHHHHHHHHHHHHHC-SSCEE
T ss_pred             hhhhhhhhhhccccccccccch-hccch-------HHHHHHHHHHHHHhh-cccee
Confidence            8999999999999998765431 11110       001235666777766 57754

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.51  Score=37.89  Aligned_cols=141  Identities=11%  Similarity=0.043  Sum_probs=86.3

Q ss_pred             EecCC-CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC
Q psy2386          51 QVGDN-EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN  129 (311)
Q Consensus        51 Ql~g~-~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~  129 (311)
                      .|||- ++++.    +.+.++|+|.+=+++ +|...    +     .=+++.+.+|++.++   ..+|.|  -.    ..
T Consensus         4 KICGIt~~~d~----~~~~~~gaD~iGfif-~~~Sp----R-----~Vs~~~a~~i~~~~~---~~~V~V--fv----~~   60 (198)
T d1piia1           4 KVCGLTRGQDA----KAAYDAGAIYGGLIF-VATSP----R-----CVNVEQAQEVMAAAP---LQYVGV--FR----NH   60 (198)
T ss_dssp             EECCCCSHHHH----HHHHHHTCSEEEEEC-CTTCT----T-----BCCHHHHHHHHHHCC---CEEEEE--ES----SC
T ss_pred             eEcCCCcHHHH----HHHHhCCCCEEEEEc-cCCCC----C-----CcCHHHHHHhhhhcc---ccccee--ee----cc
Confidence            35563 45554    444567999999998 44321    1     125788888877653   122333  11    12


Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCccc----------------cc-----------cCC--------CCcCCCCCcCcH
Q psy2386         130 SYDFVRDFVGTVSSAGCRTFIVHARNAF----------------LK-----------KLN--------PKQNRKIPILKY  174 (311)
Q Consensus       130 ~~~~~~e~~~~l~~~G~~~itvh~Rt~~----------------~~-----------G~~--------g~~~~~~~~~~~  174 (311)
                      +   ..++.+.++..+.+.|.+||....                ..           .+.        .+....-...||
T Consensus        61 ~---~~~i~~~~~~~~~d~iQlHG~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~lld~~~gGtG~~fdw  137 (198)
T d1piia1          61 D---IADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW  137 (198)
T ss_dssp             C---HHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSCCCCG
T ss_pred             c---hhhHHHhhhcccccceeecCCccHHHHHHHhccccccccceeccchhhhhhHHHhhhhcccccCCcccccceeeeh
Confidence            1   245667788899999999976310                00           000        000011224688


Q ss_pred             HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         175 NFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      +.+.   .. +..|++..||| +++.+.++++. +.||=+.+|.=.+|-
T Consensus       138 ~~~~---~~-~~~~~~LAGGl-~~~Nv~~a~~~~p~gvDvsSGvE~~pG  181 (198)
T d1piia1         138 SLLN---GQ-SLGNVLLAGGL-GADNCVEAAQTGCAGLDFNSAVESQPG  181 (198)
T ss_dssp             GGGT---TS-CCTTEEEESSC-CTTTHHHHHTTCCSEEEECGGGEEETT
T ss_pred             hhhc---cc-ccceeEEecCC-CHHHHHHHHhcCCCEEEeCCcccCCCC
Confidence            8653   22 35689999999 78888888865 999999999866664

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.54  E-value=1.2  Score=37.17  Aligned_cols=105  Identities=19%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCC-----CcHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDI-----NSYDFV  134 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~-----~~~~~~  134 (311)
                      +.+..+.+.+.||+.|||+-|            +.-+ ..+.-.++++.+++.   -+.|+.-.|+...     .+.++.
T Consensus        87 ~~~y~~~~~~lGf~~iEiSdg------------~~~i-~~~~~~~~I~~~~~~---G~~V~~EvG~K~~~~~~~~~~~~~  150 (251)
T d1qwga_          87 FDEFLNECEKLGFEAVEISDG------------SSDI-SLEERNNAIKRAKDN---GFMVLTEVGKKMPDKDKQLTIDDR  150 (251)
T ss_dssp             HHHHHHHHHHHTCCEEEECCS------------SSCC-CHHHHHHHHHHHHHT---TCEEEEEECCSSHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEcCC------------ccCC-CHHHHHHHHHHHHhC---CCEEeecccCCCCCCccccCHHHH
Confidence            445557778899999999844            2222 233444555555443   3466666676532     234567


Q ss_pred             HHHHHHHHHcCCCEEEEecCccc-cccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAF-LKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~-~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      ++.++...++|++.|.+-+|... .-|+..    ..+..+++.+.++.+.+
T Consensus       151 i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~----~~g~~r~~~i~~i~~~l  197 (251)
T d1qwga_         151 IKLINFDLDAGADYVIIEGRESGKGKGLFD----KEGKVKENELDVLAKNV  197 (251)
T ss_dssp             HHHHHHHHHHTCSEEEECCTTTCCSSTTBC----TTSCBCHHHHHHHHTTS
T ss_pred             HHHHHHHHHCCCceeEeehhhcCCccceec----CCCChhHHHHHHHHHhC
Confidence            77888889999999999998631 113221    13346788899988876

>d1kkoa1 c.1.11.2 (A:161-411) beta-Methylaspartase {Citrobacter amalonaticus [TaxId: 35703]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: beta-Methylaspartase
species: Citrobacter amalonaticus [TaxId: 35703]

Probab=92.13  E-value=0.75  Score=38.42  Aligned_cols=160  Identities=14%  Similarity=0.099  Sum_probs=89.7

Q ss_pred             CCCCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc-ccCcccCChHHHHHHHHHHhccccceeEEEE
Q psy2386          43 AEEHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF-FGAILMTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        43 ~~~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~-~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      +...|+-.|.+|++++.-..+..    .+++.+- +.+=..-+ .+-| .|..+...++.+.+-|++++.+.+.-+.+.+
T Consensus         4 ~~~VP~~g~~g~~~~~~~e~mI~----~~a~~~~-~~~~~~lk-~kvG~~g~~~~e~~~~~~~rI~~~r~~~G~~~~i~i   77 (251)
T d1kkoa1           4 PEAIPLFGQSGDDRYIAVDKMIL----KGVDVLP-HALINNVE-EKLGFKGEKLREYVRWLSDRILSLRSSPRYHPTLHI   77 (251)
T ss_dssp             CCCCCEECCCTTCTTHHHHHHHH----TTCSEEE-ETTCCCCC-CCCCTTSHHHHHHHHHHHHHHHHHCSSTTCCCEEEE
T ss_pred             CCCcccccccCCCcccchHHHHH----hhhHHHH-HHHHHHHH-HHhCCCCCCcHHHHHHHHHHHHHHHhCcCCCcceee
Confidence            44578888898888774433332    1344331 21111111 1111 2233444455666667777776644333333


Q ss_pred             ec--------cCCCCCcHHHHHHHHHHHHHcCCCE-EEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC----CCCe
Q psy2386         122 RI--------GIDDINSYDFVRDFVGTVSSAGCRT-FIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF----PELE  188 (311)
Q Consensus       122 R~--------g~~~~~~~~~~~e~~~~l~~~G~~~-itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~----~~ip  188 (311)
                      -.        +|+    .++..++++.|.+.+..+ +-|---      +.    ....+.||+..+++++.+    .++|
T Consensus        78 D~~~~~~~~~~~~----~~~ai~~l~~L~~~~~~~~l~IEqP------~~----~~~~~~d~~gl~~l~~~l~~~g~~vp  143 (251)
T d1kkoa1          78 DVYGTIGLIFDMD----PVRCAEYIASLEKEAQGLPLYIEGP------VD----AGNKPDQIRMLTAITKELTRLGSGVK  143 (251)
T ss_dssp             ECTTHHHHHTTTC----HHHHHHHHHHTGGGGTTSCEEEECC------CC----CSSHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred             ccccccccccCCC----HHHHHHHHHHHHHhcCCCceeecCC------cc----cccchHHHHHHHHHHHHHhccCCCce
Confidence            22        333    345678888888877654 323111      00    001123677777776542    2589


Q ss_pred             EEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         189 IIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       189 vi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      |.+-=-+.|++|+.++++.  ||.|.+=-.-++.-.
T Consensus       144 I~~DE~~~t~~d~~~~i~~~a~d~v~iK~~k~GGi~  179 (251)
T d1kkoa1         144 IVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIH  179 (251)
T ss_dssp             EEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTH
T ss_pred             EeccceeCCHHHHHHHHHhCCccceeccccccCCHH
Confidence            9999899999999999975  999998655444443

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.10  E-value=0.48  Score=40.11  Aligned_cols=85  Identities=12%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHH-HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc--cceeEEEEeccCCCCCcH
Q psy2386          55 NEPKKLAKSAKIIQ-KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV--EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        55 ~~~~~~~~aa~~~~-~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~  131 (311)
                      =|.+.+.+-.+.+. +.|+++|=+|          +..|-...-..+.-.++++.+.+.+  .+||.+-+-    .. +.
T Consensus        21 iD~~~l~~~i~~li~~~Gv~gi~v~----------GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~----~~-s~   85 (293)
T d1f74a_          21 INEKGLRQIIRHNIDKMKVDGLYVG----------GSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG----SV-NL   85 (293)
T ss_dssp             BCHHHHHHHHHHHHHTSCCSEEEES----------SGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECC----CS-CH
T ss_pred             cCHHHHHHHHHHHHHhCCCCEEEEC----------ccCcchhhCCHHHHhhhhheeeccccCccccccccc----cc-cH
Confidence            36788888888765 4599999887          1233333344444456666665555  467766332    22 23


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecC
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHAR  154 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~R  154 (311)
                      ++.+++++.+++.|++++.+.+.
T Consensus        86 ~~~iela~~a~~~Gad~i~~~pP  108 (293)
T d1f74a_          86 KEAVELGKYATELGYDCLSAVTP  108 (293)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCEeeccCc
Confidence            46789999999999999987544

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=91.93  E-value=1.4  Score=37.55  Aligned_cols=77  Identities=10%  Similarity=0.045  Sum_probs=52.7

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh-cCEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~-adgV  211 (311)
                      .+..+..+..|.+.+.+|..... .... ..........|+.++++++.. +.|++.  .|.+.+++++.++.+. +|+|
T Consensus       110 ~~~~~~~~~~g~~ai~~~~~~~~-~~~~-~~~~~~~~~~~~~i~~i~~~~-~~~vivk~v~~~~~~~~a~~~~~~GaD~i  186 (329)
T d1p0ka_         110 AQAKEAVEMIGANALQIHLNVIQ-EIVM-PEGDRSFSGALKRIEQICSRV-SVPVIVKEVGFGMSKASAGKLYEAGAAAV  186 (329)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTT-TC---------CTTHHHHHHHHHHHC-SSCEEEEEESSCCCHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHHcCCCEEEecccccc-hhhh-ccccccccchHHHHHHHHHHc-CCCcEEEecCCcchHHHHHHHHhcCCCEE
Confidence            45567778899999988755421 0000 000111223578999999987 677775  7899999999999876 9999


Q ss_pred             EEe
Q psy2386         212 MLG  214 (311)
Q Consensus       212 mig  214 (311)
                      .++
T Consensus       187 ~v~  189 (329)
T d1p0ka_         187 DIG  189 (329)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            984

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.90  E-value=0.19  Score=44.10  Aligned_cols=117  Identities=10%  Similarity=0.105  Sum_probs=81.0

Q ss_pred             CCCCcHHHHHHHHHHHHHcCCCEEEE---ecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHH
Q psy2386         126 DDINSYDFVRDFVGTVSSAGCRTFIV---HARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEID  202 (311)
Q Consensus       126 ~~~~~~~~~~e~~~~l~~~G~~~itv---h~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~  202 (311)
                      ..-++.+.+.++++.+.+.|++.+.-   -+||.. ..+.|.     +..-+++++++++.+ ++||+.  ||.+++++.
T Consensus       102 C~vES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp-~sf~g~-----g~~gL~~l~~~k~~~-glpvvT--dV~~~~~~~  172 (338)
T d1vr6a1         102 CSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSP-YSFQGL-----GEKGLEYLREAADKY-GMYVVT--EALGEDDLP  172 (338)
T ss_dssp             SBCCCHHHHHHHHHHHHHTTCCEEECBSCCCCCST-TSCCCC-----THHHHHHHHHHHHHH-TCEEEE--ECSSGGGHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccccceecccccc-cccccc-----hHHHHHHHHHHHhhc-CceeEE--eccchhhhh
Confidence            33345667889999999999998752   245531 122221     112468899999998 899986  899999999


Q ss_pred             HHHhhcCEEEEehhhhhCCcchHHhHhhh----ccCCCCCCCCCHHHHHHHHHHHHH
Q psy2386         203 LHLNYIDGVMLGREAYKNPFLMSNFDLNY----YSNLPQYKIPTRIDIINRMILYIR  255 (311)
Q Consensus       203 ~~l~~adgVmigRa~l~~P~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  255 (311)
                      .+.+.+|.++||--++.|..+..++.+.-    ...+   ...+.++.+.. .+|+.
T Consensus       173 ~~~e~~DilQI~A~~~~n~~LL~~~g~t~kpV~lKkG---~~~s~~e~l~a-ae~i~  225 (338)
T d1vr6a1         173 KVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRG---FMNTIEEFLLS-AEYIA  225 (338)
T ss_dssp             HHHHHCSEEEECGGGTTCHHHHHHHHTTCSCEEEECC---TTCCHHHHHHH-HHHHH
T ss_pred             hhhceeeeEEechhhccCHHHHHHhhccCCcEEecCc---cccchhhhhhh-HHHHH
Confidence            88777999999999999999988876420    1111   24677666544 34443

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.23  Score=42.48  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~  132 (311)
                      +++...+.|+.+.+.|+|.|||..=+--|       |+...   +..+.+.-+++++++..+.++||-++-         
T Consensus        36 ~~~~a~~~a~~mi~~GAdiIDIGgeSTrP-------ga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~~---------   99 (282)
T d1ajza_          36 SLIDAVKHANLMINAGATIIDVGGESTRP-------GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSK---------   99 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCST-------TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC---------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccccc-------cccCCcHHHHHHHHHHHHHHHhhcccceEEEEecC---------
Confidence            45666666666667799999997433322       33222   345677788888887778889997653         


Q ss_pred             HHHHHHHHHHHcCCCEE
Q psy2386         133 FVRDFVGTVSSAGCRTF  149 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~i  149 (311)
                        .++++.+.++|++.|
T Consensus       100 --~eVa~~al~~Ga~iI  114 (282)
T d1ajza_         100 --PEVIRESAKVGAHII  114 (282)
T ss_dssp             --HHHHHHHHHTTCCEE
T ss_pred             --hHHHHHHHhcCceEE
Confidence              244555555555554

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=91.59  E-value=0.31  Score=41.25  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      .+.+.+.++.+.+.|++.|.+.|-+....-++..       -..+.++.+.+.. +++||++.-+-.|.+++.++.+.  
T Consensus        23 ~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~-------Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~   95 (292)
T d1xkya1          23 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSE-------EKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKAT   95 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHH-------HHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCEEEECeEccchhhCCHH-------HHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHH
Confidence            4567888999999999999998887633333321       1223444444433 36899887777777777666532  


Q ss_pred             ---cCEEEEehhhhhCC
Q psy2386         208 ---IDGVMLGREAYKNP  221 (311)
Q Consensus       208 ---adgVmigRa~l~~P  221 (311)
                         +|++|+.-..+..|
T Consensus        96 ~~Gad~ilv~pP~~~~~  112 (292)
T d1xkya1          96 EVGVDAVMLVAPYYNKP  112 (292)
T ss_dssp             HTTCSEEEEECCCSSCC
T ss_pred             HcCCCEEEECCCCCCCC
Confidence               99999987766555

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.41  E-value=0.47  Score=37.29  Aligned_cols=94  Identities=13%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             HHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHH
Q psy2386         102 VSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYN  179 (311)
Q Consensus       102 ~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~  179 (311)
                      +.+.++.+++.. ..++.|-++.           .+-++.+.++|+|.|-+..-+.               .+. +.+..
T Consensus        66 i~~~i~~~k~~~~~~~I~VEv~s-----------~~q~~~a~~~~~diImLDN~sp---------------~~~k~~v~~  119 (169)
T d1qpoa1          66 VVDALRAVRNAAPDLPCEVEVDS-----------LEQLDAVLPEKPELILLDNFAV---------------WQTQTAVQR  119 (169)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEESS-----------HHHHHHHGGGCCSEEEEETCCH---------------HHHHHHHHH
T ss_pred             hhhhhhhhhhhcCCCceEEEecc-----------HHHhhhhhhcCCcEEEecCcCh---------------HhHHHHHHH
Confidence            356666666654 3456665432           3556777889999997753321               121 34555


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ++...|++.+-++||| +.+.+.++... +|.+.+|.-.+.-|+
T Consensus       120 ~~~~~~~i~lEaSGgI-~~~ni~~ya~~GvD~IS~galt~sa~~  162 (169)
T d1qpoa1         120 RDSRAPTVMLESSGGL-SLQTAATYAETGVDYLAVGALTHSVRV  162 (169)
T ss_dssp             HHHHCTTCEEEEESSC-CTTTHHHHHHTTCSEEECGGGTSSBCC
T ss_pred             hhccCCeeEEEEeCCC-CHHHHHHHHHcCCCEEECCccccCCCc
Confidence            5656667889999999 67888888876 999999955444344

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.17  E-value=3.7  Score=34.57  Aligned_cols=110  Identities=7%  Similarity=0.066  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc---ccccCCCCcCCCCCcCcH
Q psy2386          99 PLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA---FLKKLNPKQNRKIPILKY  174 (311)
Q Consensus        99 ~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~---~~~G~~g~~~~~~~~~~~  174 (311)
                      ++...+-++.+++.. +.++.+.+..+.+.    ++..+.++.+++.|+|+|.++---.   ...++. ......+..-.
T Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~-~~~~~~~~~~~  160 (312)
T d1gtea2          86 AAYWCQSVTELKADFPDNIVIASIMCSYNK----NDWMELSRKAEASGADALELNLSCPHGMGERGMG-LACGQDPELVR  160 (312)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEEECCCSCH----HHHHHHHHHHHHTTCSEEEEECCCBCCCC------SBGGGCHHHHH
T ss_pred             hhhhhhhhccccccccccccccccccccch----hHHHHHHHHhccCCCCeEeeccCCCCcccccccc-hhhhhhHHHHH
Confidence            344445555555544 45666666655433    3567889999999999999862211   011110 00000000112


Q ss_pred             HHHHHHHHhCCCCeEEE--ecCCCCHHHHHHHHhh--cCEEEEe
Q psy2386         175 NFVYNLKKDFPELEIII--NGGIKTKKEIDLHLNY--IDGVMLG  214 (311)
Q Consensus       175 ~~i~~i~~~~~~ipvi~--nGgI~s~~da~~~l~~--adgVmig  214 (311)
                      +.+..+++.+ ++||+.  ..++.+..++.+.+..  +|+|.+.
T Consensus       161 ~i~~~v~~~~-~~pv~vKl~~~~~~~~~i~~~~~~~g~~gi~~~  203 (312)
T d1gtea2         161 NICRWVRQAV-QIPFFAKLTPNVTDIVSIARAAKEGGADGVTAT  203 (312)
T ss_dssp             HHHHHHHHHC-SSCEEEEECSCSSCHHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHhhcc-CCceeecccccchhHHHHHHHHHHhcccceEEE
Confidence            4556677776 799874  5677888887776654  9999875

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.10  E-value=0.96  Score=39.45  Aligned_cols=108  Identities=16%  Similarity=0.186  Sum_probs=69.9

Q ss_pred             ccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCcc-ccccCCCCcCCCC
Q psy2386          91 FGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNA-FLKKLNPKQNRKI  169 (311)
Q Consensus        91 ~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~-~~~G~~g~~~~~~  169 (311)
                      -|+.++++.+++.++    .+ ++.||.+|--.. -   +.+++...++.+.+.|...|.+.-|-. .+.++      ..
T Consensus       183 I~A~~~~n~~LL~~~----g~-t~kpV~lKkG~~-~---s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~~------~~  247 (338)
T d1vr6a1         183 IGARNAQNFRLLSKA----GS-YNKPVLLKRGFM-N---TIEEFLLSAEYIANSGNTKIILCERGIRTFEKA------TR  247 (338)
T ss_dssp             ECGGGTTCHHHHHHH----HT-TCSCEEEECCTT-C---CHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCS------SS
T ss_pred             echhhccCHHHHHHh----hc-cCCcEEecCccc-c---chhhhhhhHHHHHhcCCccceeeeccccccccc------cc
Confidence            477788887776543    33 589999994432 2   234567778888899999888765531 12221      22


Q ss_pred             CcCcHHHHHHHHHhCCCCeEEEe----cCCCCHH--HHHHHHhh-cCEEEEe
Q psy2386         170 PILKYNFVYNLKKDFPELEIIIN----GGIKTKK--EIDLHLNY-IDGVMLG  214 (311)
Q Consensus       170 ~~~~~~~i~~i~~~~~~ipvi~n----GgI~s~~--da~~~l~~-adgVmig  214 (311)
                      ...|+..+..+++.. .+|||..    ||-+..-  -++..++. |||+||=
T Consensus       248 ~~lD~~~i~~~k~~~-~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE  298 (338)
T d1vr6a1         248 NTLDISAVPIIRKES-HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVE  298 (338)
T ss_dssp             SBCCTTHHHHHHHHB-SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEE
T ss_pred             cchhhcccceeeccc-cCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEE
Confidence            236888888888775 7999874    5554432  23444444 9999997

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.02  E-value=3.3  Score=33.72  Aligned_cols=131  Identities=8%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc-CCCCC--cHHHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG-IDDIN--SYDFVRD  136 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g-~~~~~--~~~~~~e  136 (311)
                      +.++.+.+.++|||+|||....|......       ..+++.+.++++    ..++.++.=...+ +++..  ..+.+.+
T Consensus        20 lee~l~~a~~~G~dgiEl~~~~~~~~~~~-------~~~~~~~k~~l~----~~gl~i~~l~~~~~~~~~~~~~~~~~~~   88 (271)
T d2q02a1          20 IEAFFRLVKRLEFNKVELRNDMPSGSVTD-------DLNYNQVRNLAE----KYGLEIVTINAVYPFNQLTEEVVKKTEG   88 (271)
T ss_dssp             HHHHHHHHHHTTCCEEEEETTSTTSSTTT-------TCCHHHHHHHHH----HTTCEEEEEEEETTTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccccccc-------cCCHHHHHHHHH----HcCCcEEEeecccccCCCCHHHHHHHHH
Confidence            55667777899999999964433321111       123444444433    2455543222222 22211  2344566


Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe------cCCCCHHHHHHHHhh
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN------GGIKTKKEIDLHLNY  207 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n------GgI~s~~da~~~l~~  207 (311)
                      +++.+.+.|+..|.+++...  ......+. .  .-.+..+.++++.. ++-+..-      .-+.+.+++.++++.
T Consensus        89 ~i~~a~~lG~~~v~~~~~~~--~~~~~~~~-~--~~~l~~l~~~a~~~-gv~l~lE~~~~~~~~~~~~~~~~~li~~  159 (271)
T d2q02a1          89 LLRDAQGVGARALVLCPLND--GTIVPPEV-T--VEAIKRLSDLFARY-DIQGLVEPLGFRVSSLRSAVWAQQLIRE  159 (271)
T ss_dssp             HHHHHHHHTCSEEEECCCCS--SBCCCHHH-H--HHHHHHHHHHHHTT-TCEEEECCCCSTTCSCCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEEecCCC--CccchHHH-H--HHHHHHHHHHhccC-CeEEEEeecCCcCcccCCHHHHHHHHHH
Confidence            67777889999999875421  00000000 0  00123344555554 5555432      247899999998876

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.95  E-value=0.44  Score=41.57  Aligned_cols=108  Identities=15%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             CCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccccee
Q psy2386          45 EHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDI  117 (311)
Q Consensus        45 ~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pv  117 (311)
                      +.|+++-|.       |.+.++..+.++.++++|.|.+++..|.......        ...|..-..+.+.+|+.+++||
T Consensus       208 ~~~~~vr~~~~~~~~~g~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~--------~~~~~~~~~~~~~ik~~~~~pv  279 (337)
T d1z41a1         208 DGPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADI--------NVFPGYQVSFAEKIREQADMAT  279 (337)
T ss_dssp             CSCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCC--------CCCTTTTHHHHHHHHHHHCCEE
T ss_pred             cccceEEecccccccCccchhhhHHHHHHHHHcCCccccccccccccccc--------ccCCcccHHHHHHHHHhcCceE
Confidence            467777776       5678999999999999999999999887543211        1123334566778888889998


Q ss_pred             EEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC
Q psy2386         118 TVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF  184 (311)
Q Consensus       118 svKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~  184 (311)
                      .+==+  +.+       .+.+..+.+.| +|.|.+ ||...              +|-+++.++++..
T Consensus       280 i~~G~--i~~-------~~~ae~~l~~g~~D~V~~-gR~~i--------------adPd~~~k~~~~~  323 (337)
T d1z41a1         280 GAVGM--ITD-------GSMAEEILQNGRADLIFI-GRELL--------------RDPFFARTAAKQL  323 (337)
T ss_dssp             EECSS--CCS-------HHHHHHHHHTTSCSEEEE-CHHHH--------------HCTTHHHHHHHHT
T ss_pred             EEeCC--cCC-------HHHHHHHHHCCCcceehh-hHHHH--------------hCchHHHHHHhhC
Confidence            75211  221       35566666776 887766 66431              2445567776653

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=90.90  E-value=3.8  Score=34.13  Aligned_cols=131  Identities=12%  Similarity=0.025  Sum_probs=85.5

Q ss_pred             EEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccce-eEEEEeccCCC
Q psy2386          49 AFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID-ITVKHRIGIDD  127 (311)
Q Consensus        49 ~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p-vsvKiR~g~~~  127 (311)
                      +++|-..|..    .|+++.++|+|.|=+.  =...++.. |+-+.+-=..+.+..-.++|++...-+ +.+-+..+...
T Consensus        17 i~~lTayD~~----~A~~~~~agvDiiLVG--DSlgmv~~-G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~   89 (262)
T d1m3ua_          17 FATITAYDYS----FAKLFADEGLNVMLVG--DSLGMTVQ-GHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA   89 (262)
T ss_dssp             EEEEECCSHH----HHHHHHHHTCCEEEEC--TTHHHHTT-CCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred             EEEEEcCCHH----HHHHHHHCCCCEEEEc--CcHHhccc-CCCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence            5677777765    4677888999998764  22222222 344445556677777788888776443 45555544332


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe-----------cCC-
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN-----------GGI-  195 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n-----------GgI-  195 (311)
                        +.++....+..+.+.|+|+|-+-|...                ..+.|+.+.+.  .|||++-           ||. 
T Consensus        90 --~~~~a~~~a~~l~~~GAdaVKlEgg~~----------------~~~~I~~L~~~--gIPV~gHiGL~PQ~~~~~GG~r  149 (262)
T d1m3ua_          90 --TPEQAFENAATVMRAGANMVKIEGGEW----------------LVETVQMLTER--AVPVCGHLGLTPQSVNIFGGYK  149 (262)
T ss_dssp             --SHHHHHHHHHHHHHTTCSEEECCCSGG----------------GHHHHHHHHHT--TCCEEEEEESCGGGHHHHTSSC
T ss_pred             --hhHHHHHHHHHHHhcCCcEEEeccchh----------------HHHHHHHHHHc--CCeEEeehhhchhhhhhcCCcc
Confidence              334567788888899999998876542                35788899886  6999874           442 


Q ss_pred             ---CCHHHHHHHHh
Q psy2386         196 ---KTKKEIDLHLN  206 (311)
Q Consensus       196 ---~s~~da~~~l~  206 (311)
                         .|.+++.++++
T Consensus       150 ~qGkt~~ea~~l~~  163 (262)
T d1m3ua_         150 VQGRGDEAGDQLLS  163 (262)
T ss_dssp             CCCCSHHHHHHHHH
T ss_pred             ccCccHHHHHHHHH
Confidence               46677766653

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=90.44  E-value=2  Score=36.74  Aligned_cols=147  Identities=15%  Similarity=0.152  Sum_probs=89.4

Q ss_pred             CCCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          43 AEEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        43 ~~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      -.++|++..+.    |-+|+++++.+..+..-|+|.|-=  |+.-|..        +.+.++-+.+.+.++...+.++..
T Consensus        16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~--------~p~~eRv~~~~~a~~~a~~~TG~~   87 (307)
T d1geha1          16 IKDRPIYGVVPKPKVGYSPEEFEKLAYDLLSNGADYMKDDENLTSPWY--------NRFEERAEIMAKIIDKVENETGEK   87 (307)
T ss_dssp             CCSSCEEEECCSSCSSCCHHHHHHHHHHHHHTTCCEEECCTTCCCCTT--------SCHHHHHHHHHHHHHHHHHHTCSC
T ss_pred             CCCCceEEeeeCCcCCCCHHHHHHHHHHHHhcCCCeeeCCccccCCCC--------CcHHHHHHHHHHHHHHHHHHhCCe
Confidence            35799998886    889999999999998889998854  3332211        112244455556666666666665


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEe----
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIIN----  192 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~n----  192 (311)
                      +.-=..+  +.  +.+++.+-++.+.++|+.++-|..-+   .|++          -+..++++.+.. .+||.+-    
T Consensus        88 ~lYa~Ni--T~--~~~em~~ra~~a~~~G~~~vmi~~~~---~G~~----------al~~lr~~~~~~-~lpIh~H~A~~  149 (307)
T d1geha1          88 KTWFANI--TA--DLLEMEQRLEVLADLGLKHAMVDVVI---TGWG----------ALRYIRDLAADY-GLAIHGHRAMH  149 (307)
T ss_dssp             CEEECBC--CS--SHHHHHHHHHHHHHHTCCEEEEEHHH---HCHH----------HHHHHHHHHHHT-TCEEEEECTTG
T ss_pred             eEEEEEc--cC--ChHHHHHHHHHHHHcCCCEEEEeccc---cchH----------HHHHHHHhhccC-CeEEEeccccc
Confidence            4443333  22  23467888999999999999876433   1211          123344444455 5888753    


Q ss_pred             cCCC-------CHHHHHHHHhh--cCEEEEeh
Q psy2386         193 GGIK-------TKKEIDLHLNY--IDGVMLGR  215 (311)
Q Consensus       193 GgI~-------s~~da~~~l~~--adgVmigR  215 (311)
                      |-+.       |..-..+++..  +|.+.++.
T Consensus       150 ga~~~~~~~Gis~~vl~kl~Rl~GaD~ih~~~  181 (307)
T d1geha1         150 AAFTRNPYHGISMFVLAKLYRLIGIDQLHVGT  181 (307)
T ss_dssp             GGTSSCTTSEECHHHHHHHHHHHTCSEEECCC
T ss_pred             eeeecCccCCccHHHHHHHHHHhCcCceeccc
Confidence            2222       22233444443  88888864

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.42  E-value=2.8  Score=33.45  Aligned_cols=84  Identities=11%  Similarity=0.184  Sum_probs=48.7

Q ss_pred             CCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEec
Q psy2386          45 EHPIAFQVGDNE-PKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRI  123 (311)
Q Consensus        45 ~~p~~~Ql~g~~-~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~  123 (311)
                      +.++..=+-=.| |+....+++.+.++|+|.+.+|..|-                    .+++++..+..+..+..-+-+
T Consensus        46 ~~~IflDlK~~DIpnTv~~~v~~~~~~g~d~itvH~~~G--------------------~~~l~~a~~~~~~~~l~Vt~L  105 (198)
T d1vqta1          46 NLKIILDLKFCDIPSTVERSIKSWDHPAIIGFTVHSCAG--------------------YESVERALSATDKHVFVVVKL  105 (198)
T ss_dssp             TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEEEEEGGGC--------------------HHHHHHHHHHCSSEEEEECCC
T ss_pred             CCcEEEEehhcCccHHHHHHHHHHhhccccEEEEEccCc--------------------hhhhhHhhhhccccceeEEEe
Confidence            344555444343 78888888888889999999994322                    123333333344333322222


Q ss_pred             -cCCCCCcHHHHHHHHHHHHHcCCCEEE
Q psy2386         124 -GIDDINSYDFVRDFVGTVSSAGCRTFI  150 (311)
Q Consensus       124 -g~~~~~~~~~~~e~~~~l~~~G~~~it  150 (311)
                       .++.  ..++..+.+..+.+.|.+.+.
T Consensus       106 tS~~~--~~~~~~~~~~~l~~~g~~~vv  131 (198)
T d1vqta1         106 TSMEG--SLEDYMDRIEKLNKLGCDFVL  131 (198)
T ss_dssp             TTSCC--CHHHHHHHHHHHHHHTCEEEC
T ss_pred             ecccc--chHHHHHHHHHHHHhccCccc
Confidence             2322  233556777788889988663

>d1kcza1 c.1.11.2 (A:161-413) beta-Methylaspartase {Clostridium tetanomorphum [TaxId: 1553]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Enolase C-terminal domain-like
family: D-glucarate dehydratase-like
domain: beta-Methylaspartase
species: Clostridium tetanomorphum [TaxId: 1553]

Probab=90.26  E-value=0.47  Score=39.77  Aligned_cols=146  Identities=11%  Similarity=0.089  Sum_probs=83.6

Q ss_pred             CCCeEEEecCCCHHHHHHHHH-HHH---HcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHH---hcccccee
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAK-IIQ---KWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAM---RDSVEIDI  117 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~-~~~---~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v---~~~~~~pv  117 (311)
                      ..|+-.|.++..+.....++. .+.   +.||..+.+            ..|.....+.+.+..+++++   +...+.-+
T Consensus         6 ~VPiy~~~G~~~~~~~d~~i~k~~~~~~~~~~~~vK~------------K~G~~~~~~~e~~~~i~~rI~~~r~~~g~~~   73 (253)
T d1kcza1           6 AVPVFAQSGDDRYDNVDKMIIKEADVLPHALINNVEE------------KLGLKGEKLLEYVKWLRDRIIKLRVREDYAP   73 (253)
T ss_dssp             CCCEECCCTTCTTHHHHHHHHTTCSEEEECCCCCCCC------------CCCTTSHHHHHHHHHHHHHHHHHCSSTTCCC
T ss_pred             CCCeeeccCCcccccHHHHHHHHhhhhhhhhhhhhch------------hcCCCccccHHHHHHHHHHHHHHhcccccCc
Confidence            468888888887665544332 111   123333333            34544555566655555555   44443223


Q ss_pred             EEEEec--------cCCCCCcHHHHHHHHHHHHHcCCCE-EEEecCccccccCCCCcCCCCCcCcH----HHHHHHHHhC
Q psy2386         118 TVKHRI--------GIDDINSYDFVRDFVGTVSSAGCRT-FIVHARNAFLKKLNPKQNRKIPILKY----NFVYNLKKDF  184 (311)
Q Consensus       118 svKiR~--------g~~~~~~~~~~~e~~~~l~~~G~~~-itvh~Rt~~~~G~~g~~~~~~~~~~~----~~i~~i~~~~  184 (311)
                      .+-+-.        +|+    .++.+++++.|++.+..+ +-+-.-.              ..-||    +..+++++..
T Consensus        74 ~l~iD~~~~~~~n~~~~----~~eai~~~~~L~~~~~~y~i~iEqP~--------------~~~d~~~~~e~~a~lr~~~  135 (253)
T d1kcza1          74 IFHIDVYGTIGAAFDVD----IKAMADYIQTLAEAAKPFHLRIEGPM--------------DVEDRQKQMEAMRDLRAEL  135 (253)
T ss_dssp             EEEEECTTHHHHHTTTC----HHHHHHHHHHHHHHHTTSCEEEECSB--------------CCSSHHHHHHHHHHHHHHH
T ss_pred             eeeehhhhccCccCCCC----HHHHHHHHHHHHHhcCCCCceEecCC--------------CCccHhhHHHHHHHHHHHH
Confidence            232221        343    346788999999887665 2222110              01243    4556665542


Q ss_pred             ----CCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhC
Q psy2386         185 ----PELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKN  220 (311)
Q Consensus       185 ----~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~  220 (311)
                          .++||.+.=-++|++|+.++++.  ||.|.+=-.-++.
T Consensus       136 ~~~g~~vpI~~DE~~~~~~d~~~~i~~~a~d~v~iK~~k~GG  177 (253)
T d1kcza1         136 DGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGG  177 (253)
T ss_dssp             HHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSS
T ss_pred             hccCCccceeccccccCHHHHHHHHHhCCcCeeeccccccCC
Confidence                25899988889999999999975  9999886444333

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.09  E-value=1.2  Score=37.37  Aligned_cols=83  Identities=10%  Similarity=0.086  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVR  135 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~  135 (311)
                      +++...+-|+.+.+.|+|.|||..=+-.|....    -......+.+..+++.+++. ++++||-++-           .
T Consensus        23 ~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~----is~~eE~~Rl~p~i~~~~~~-~~~iSIDT~~-----------~   86 (270)
T d1eyea_          23 DLDDAVKHGLAMAAAGAGIVDVGGESSRPGATR----VDPAVETSRVIPVVKELAAQ-GITVSIDTMR-----------A   86 (270)
T ss_dssp             SHHHHHHHHHHHHHTTCSEEEEECC------------------HHHHHHHHHHHHHT-TCCEEEECSC-----------H
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCccCCCCCEe----eechhhcccccceeeeeccc-ceeechHhhh-----------H
Confidence            667777777777777999999974333221110    11234556677777777664 6778875443           4


Q ss_pred             HHHHHHHHcCCCEEE-EecC
Q psy2386         136 DFVGTVSSAGCRTFI-VHAR  154 (311)
Q Consensus       136 e~~~~l~~~G~~~it-vh~R  154 (311)
                      ++++.+.++|++.|- |.|.
T Consensus        87 ~Va~~al~~Ga~iINDvsg~  106 (270)
T d1eyea_          87 DVARAALQNGAQMVNDVSGG  106 (270)
T ss_dssp             HHHHHHHHTTCCEEEETTTT
T ss_pred             HHHHHHHhcCCeEEEecccc
Confidence            788888999999986 5544

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.01  E-value=0.46  Score=40.19  Aligned_cols=85  Identities=14%  Similarity=0.214  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      ++.+.+.++.+.+.|++.|.+-|-|....-++..+       ..+.++.+.+.. .++||++.-+=.|.+++.++.+.  
T Consensus        21 ~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~   93 (295)
T d1o5ka_          21 LESYERLVRYQLENGVNALIVLGTTGESPTVNEDE-------REKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAE   93 (295)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHH-------HHHHhhhhccccccCCceEeecccccHHHHHHHHHHHH
Confidence            44677888999999999999988876333333211       122333333332 25899988777777787776642  


Q ss_pred             ---cCEEEEehhhhhCCc
Q psy2386         208 ---IDGVMLGREAYKNPF  222 (311)
Q Consensus       208 ---adgVmigRa~l~~P~  222 (311)
                         +|+||+.-..+..|.
T Consensus        94 ~~Gad~v~v~pP~y~~~s  111 (295)
T d1o5ka_          94 KLGANGVLVVTPYYNKPT  111 (295)
T ss_dssp             HHTCSEEEEECCCSSCCC
T ss_pred             HcCCCEEEEeCCCCCCCC
Confidence               999999887776663

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=89.98  E-value=3.3  Score=34.25  Aligned_cols=80  Identities=15%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             CCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEecc
Q psy2386          45 EHPIAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIG  124 (311)
Q Consensus        45 ~~p~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g  124 (311)
                      +..++..+.-.+|.    .++++..+|||+|-|-+=.          |   .-+++.+..++.+++.. +++..|  |+.
T Consensus        15 ~~~~G~~~~~~~p~----~~ei~a~~G~Dfv~iD~EH----------g---~~~~~~~~~~i~a~~~~-g~~~~V--Rvp   74 (253)
T d1dxea_          15 QVQIGCWSALSNPI----STEVLGLAGFDWLVLDGEH----------A---PNDISTFIPQLMALKGS-ASAPVV--RVP   74 (253)
T ss_dssp             CCEEEEEECSCSHH----HHHHHTTSCCSEEEEESSS----------S---SCCHHHHHHHHHHTTTC-SSEEEE--ECS
T ss_pred             CCEEEEEecCCCHH----HHHHHHcCCCCEEEEeccc----------C---CCChhHHHHHHHHHhcc-CCCcee--cCC
Confidence            44577777767776    3466668999999886422          1   13678888899887764 555444  664


Q ss_pred             CCCCCcHHHHHHHHHHHHHcCCCEEEE
Q psy2386         125 IDDINSYDFVRDFVGTVSSAGCRTFIV  151 (311)
Q Consensus       125 ~~~~~~~~~~~e~~~~l~~~G~~~itv  151 (311)
                      ..+       ..+++++.+.|++.|.+
T Consensus        75 ~~~-------~~~i~~~LD~Ga~GIiv   94 (253)
T d1dxea_          75 TNE-------PVIIKRLLDIGFYNFLI   94 (253)
T ss_dssp             SSC-------HHHHHHHHHTTCCEEEE
T ss_pred             CCC-------HHHHHHHHhcCccEEEe
Confidence            332       36789999999999986

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=89.90  E-value=0.35  Score=41.10  Aligned_cols=77  Identities=17%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCccc---CChHHHHHHHHHHhccccceeEEEEeccCCCCCcHH
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILM---TKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll---~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~  132 (311)
                      +++...+-|+.+.+.|+|.|||..=.-.|       |+...   +..+.+..+++++++..++++||-.+-         
T Consensus        40 ~~~~a~~~a~~~i~~GAdiIDIGaeSTrP-------g~~~is~~eE~~rl~p~i~~~~~~~~~~iSIDT~~---------  103 (273)
T d1tx2a_          40 EVDAAVRHAKEMRDEGAHIIDIGGESTRP-------GFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTYK---------  103 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC-----------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECSC---------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEeeceeccc-------cccccCHHHHHHhhchhHHhhhccceEEEehHHhh---------
Confidence            34555555555667799999998443322       22222   233566667777777678889887663         


Q ss_pred             HHHHHHHHHHHcCCCEEE
Q psy2386         133 FVRDFVGTVSSAGCRTFI  150 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~it  150 (311)
                        .+.++.+.++|++.|-
T Consensus       104 --~~Va~~al~~G~~iIN  119 (273)
T d1tx2a_         104 --AEVAKQAIEAGAHIIN  119 (273)
T ss_dssp             --HHHHHHHHHHTCCEEE
T ss_pred             --HHHHHHHHHcCCeEEe
Confidence              3556666677777663

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=89.87  E-value=1.5  Score=36.07  Aligned_cols=136  Identities=11%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeE-EEEeccCCCCCc------H
Q psy2386          59 KLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDIT-VKHRIGIDDINS------Y  131 (311)
Q Consensus        59 ~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvs-vKiR~g~~~~~~------~  131 (311)
                      .+.+..+.+.++||++|||...=+.+....          ...+.++.+.+.+ .++.+. +-.-.++...+.      .
T Consensus        15 ~l~~~l~~a~~~Gf~~IEl~~~~~~~~~~~----------~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~   83 (278)
T d1i60a_          15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLK----------DHSLDDLAEYFQT-HHIKPLALNALVFFNNRDEKGHNEII   83 (278)
T ss_dssp             CHHHHHHHHHHTTCSEEEEETTTHHHHHTT----------SSCHHHHHHHHHT-SSCEEEEEEEEECCSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHCcCEEEeCCccccccccC----------cccHHHHHHHHHH-cCCcEEEEecCCCCCCCCHHHHHHHH
Confidence            366677888899999999974422221111          1113334444433 355543 333334443321      2


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE---e---cCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII---N---GGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~---n---GgI~s~~da~~~l  205 (311)
                      +.+...++.+.+.|+..+++|+-.. ..+.+..+....-...+..+.++.+.. ++.+..   +   ..+.+++++.+++
T Consensus        84 ~~~~~~i~~a~~lG~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~-Gv~l~lE~~~~~~~~~~~~~~~~~ll  161 (278)
T d1i60a_          84 TEFKGMMETCKTLGVKYVVAVPLVT-EQKIVKEEIKKSSVDVLTELSDIAEPY-GVKIALEFVGHPQCTVNTFEQAYEIV  161 (278)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCBC-SSCCCHHHHHHHHHHHHHHHHHHHGGG-TCEEEEECCCCTTBSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccccccccC-CCCCCHHHHHHHHHHHHHHHHHHHHHh-CCeeeeeeccccccccCCHHHHHHHH
Confidence            2344566667789999999985432 011000000000000122233344444 577665   1   3678999999998


Q ss_pred             hh
Q psy2386         206 NY  207 (311)
Q Consensus       206 ~~  207 (311)
                      +.
T Consensus       162 ~~  163 (278)
T d1i60a_         162 NT  163 (278)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=89.22  E-value=2.2  Score=36.80  Aligned_cols=148  Identities=10%  Similarity=-0.021  Sum_probs=87.7

Q ss_pred             CCCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEe--ccCCCccccccCcccCcccCChHHHHHHHHHHhccccce
Q psy2386          43 AEEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINL--NCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEID  116 (311)
Q Consensus        43 ~~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~Idi--N~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~p  116 (311)
                      -.++|++.-+.    |-+|+++++.+..+..-|+|.|-=  |++-|.-        +-+.++-+.+.+.++...+.++..
T Consensus        14 v~~RPLlgtiiKP~~Glsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~--------~p~~eRv~~~~~av~~a~~eTG~~   85 (325)
T d1wdda1          14 KYGRPLLGCTIKPKLGLSAKNYGRACYECLRGGLDFTKDDENVNSQPF--------MRWRDRFVFCAEAIYKSQAETGEI   85 (325)
T ss_dssp             CCSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTT--------BCHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCCeEEeecCCCCCCCHHHHHHHHHHHHccCCceeeCCcccCCCCC--------cchHHHHHHHHHHHHHHHHhhCCc
Confidence            44789888876    889999999999888889998854  4332211        112234455555555555555544


Q ss_pred             eEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEE-----
Q psy2386         117 ITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIII-----  191 (311)
Q Consensus       117 vsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~-----  191 (311)
                      ...=+.+  +.. +.++..+-++.+.++|++.+.+..-+   .|++          -...+++..+.. ++|+.+     
T Consensus        86 k~y~~ni--t~~-~~~em~~ra~~a~e~G~~~~mi~~~~---~G~~----------a~~~l~~~~~~~-~l~ih~Hra~~  148 (325)
T d1wdda1          86 KGHYLNA--TAG-TCEEMIKRAVFARELGVPIVMHDYLT---GGFT----------ANTSLAHYCRDN-GLLLHIHRAMH  148 (325)
T ss_dssp             CEEEEEC--CCS-SHHHHHHHHHHHHHHTCSEEEEEHHH---HCHH----------HHHHHHHHHHHH-TCEEEEECTTH
T ss_pred             eeEEecc--CCC-CHHHHHHHHHHHHHcCCCEEEEeccc---ccHH----------HHHHHHHhhhhc-Cceeecccccc
Confidence            3333332  211 12356777888899999999774322   1211          122333433344 578876     


Q ss_pred             -------ecCCCCHHHHHHHHhh--cCEEEEehh
Q psy2386         192 -------NGGIKTKKEIDLHLNY--IDGVMLGRE  216 (311)
Q Consensus       192 -------nGgI~s~~da~~~l~~--adgVmigRa  216 (311)
                             +.|| |..-..++...  +|.+.++..
T Consensus       149 ga~tr~~~~Gi-s~~vl~kl~RLaGaD~ih~~~~  181 (325)
T d1wdda1         149 AVIDRQKNHGM-HFRVLAKALRMSGGDHIHAGTV  181 (325)
T ss_dssp             HHHHSCSSSEE-CHHHHHHHHHHHCCSEEECCCS
T ss_pred             cccccCCCCCc-cHHHHHHHHHHcCCCccccCcc
Confidence                   5566 34445555543  999988755

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=89.02  E-value=0.3  Score=40.68  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCC
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGI  195 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI  195 (311)
                      ++++++.++++|||.||||.|.         ..|.+   ..+.+..+++.+ ++|+=..|..
T Consensus        26 ~~~~a~~~~~~GadgITvH~R~---------DrRHI---~~~Dv~~l~~~~-~~~lNlE~a~   74 (242)
T d1m5wa_          26 PVQAAFIAEQAGADGITVHLRE---------DRRHI---TDRDVRILRQTL-DTRMNLEMAV   74 (242)
T ss_dssp             HHHHHHHHHTTTCSEEEEECCT---------TCSSS---CHHHHHHHHHHC-SSEEEEEECS
T ss_pred             HHHHHHHHHHcCCCeEEeCCCC---------Ccccc---chHHHHHHHHHh-hccccccccc
Confidence            6899999999999999999995         22332   334455555554 4555444433

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=0.66  Score=39.18  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh--
Q psy2386         131 YDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY--  207 (311)
Q Consensus       131 ~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~--  207 (311)
                      .+.+...++.+.+.|++.|.+.|-+.....++-.+       ..+.++.+.+.. +++||++..+=.|.+++.++.+.  
T Consensus        21 ~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~E-------r~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~   93 (292)
T d2a6na1          21 RASLKKLIDYHVASGTSAIVSVGTTGESATLNHDE-------HADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFN   93 (292)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHH-------HHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHH-------HHHHhhhhhhhccccceeEeecccchHHHHHHHhccHH
Confidence            45677889999999999999988875332222111       112344444432 35899998888888888887753  


Q ss_pred             ---cCEEEEehhhhhCC
Q psy2386         208 ---IDGVMLGREAYKNP  221 (311)
Q Consensus       208 ---adgVmigRa~l~~P  221 (311)
                         +|++|+....+..|
T Consensus        94 ~~Gad~~~~~pP~~~~~  110 (292)
T d2a6na1          94 DSGIVGCLTVTPYYNRP  110 (292)
T ss_dssp             TSSCCEEEEECCCSSCC
T ss_pred             hcCCcceeccCCCCCCC
Confidence               99999997765544

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=88.52  E-value=0.5  Score=38.11  Aligned_cols=132  Identities=14%  Similarity=0.073  Sum_probs=78.6

Q ss_pred             HHHHHHHcCCCEEEecc-------CCCccccccCcccCcccCCh---HHHHHHHHHHhccc-cceeEEEEeccCCCCCcH
Q psy2386          63 SAKIIQKWGYDEINLNC-------GCPSNRVQNGFFGAILMTKP---LLVSDCIKAMRDSV-EIDITVKHRIGIDDINSY  131 (311)
Q Consensus        63 aa~~~~~~g~d~IdiN~-------gCP~~~v~~~~~G~~Ll~~~---~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~  131 (311)
                      .|++++++|||.|=+--       |-|..        ..++.=+   +.+.++.+.+...+ ++||.+-+- |+++..  
T Consensus        32 sAklae~aGfdai~~~~~g~~~s~g~~~~--------~g~l~~~d~~~~~~~~a~~i~~~v~~iPviaD~d-G~g~~~--  100 (197)
T d2p10a1          32 SAKSEEAGDIDLIVIYNSGRYRMAGRGSL--------AGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVN-GTDPFM--  100 (197)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHTTCCGG--------GGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEEC-TTCTTC--
T ss_pred             HHHHHHHcCCCEEEEecHHHHHHcCCccc--------ccccChhHHHHHHHHHHHHHHHhcccCceEEecC-CCCcch--
Confidence            57889999999998642       22221        1222211   23345555555544 799999997 887654  


Q ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCC--CCCcCc----HHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Q psy2386         132 DFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNR--KIPILK----YNFVYNLKKDFPELEIIINGGIKTKKEIDLHL  205 (311)
Q Consensus       132 ~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~--~~~~~~----~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l  205 (311)
                       +....++.++++|+..|++-++.....   |+...  ..-..+    .+++--.+..  .+.  ..|=-.+.+.++.+.
T Consensus       101 -nv~rtv~~~~~aG~agI~~~pk~g~~~---g~~~~~~e~a~~~~~~~~d~liiARtd--a~~--~~g~~~Ai~Ra~ay~  172 (197)
T d2p10a1         101 -VMSTFLRELKEIGFAGVQNFPTVGLID---GLFRQNLEETGMSYAQEVEMIAEAHKL--DLL--TTPYVFSPEDAVAMA  172 (197)
T ss_dssp             -CHHHHHHHHHHHTCCEEEECSCGGGCC---HHHHHHHHHTTCCHHHHHHHHHHHHHT--TCE--ECCEECSHHHHHHHH
T ss_pred             -hHHHHHHHHHHcCCeEEeccccccCcc---chhhhhHHHHHHHhccCccHHHHHHHh--hhh--hccHHHHHHHHHHHH
Confidence             367889999999999998876543222   21000  000011    2333222322  232  246557899999998


Q ss_pred             hh-cCEEEE
Q psy2386         206 NY-IDGVML  213 (311)
Q Consensus       206 ~~-adgVmi  213 (311)
                      +. ||+|.+
T Consensus       173 eAGAD~i~~  181 (197)
T d2p10a1         173 KAGADILVC  181 (197)
T ss_dssp             HHTCSEEEE
T ss_pred             HcCCCEEEE
Confidence            76 999987

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.36  E-value=0.8  Score=39.69  Aligned_cols=99  Identities=17%  Similarity=0.212  Sum_probs=64.0

Q ss_pred             CCCCCeEEEec-------CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccc
Q psy2386          43 AEEHPIAFQVG-------DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEI  115 (311)
Q Consensus        43 ~~~~p~~~Ql~-------g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~  115 (311)
                      +.+.|+++-+.       |.+.++..+.++.++++|.|.+++..|............  .  .......+.+.+|+.+++
T Consensus       206 g~d~~v~~R~s~~d~~~~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~--~--~~~~~~~~~~~ik~~~~~  281 (330)
T d1ps9a1         206 GNDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATP--V--PRGAFSWVTRKLKGHVSL  281 (330)
T ss_dssp             CSSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTT--S--CTTTTHHHHHHHTTSCSS
T ss_pred             CCCceeEecccccccccCCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCC--C--cchhHHHHHHHHHhhCCc
Confidence            55777777664       567899999999999999999999877543322111110  0  112234567888998999


Q ss_pred             eeEEEEeccCCCCCcHHHHHHHHHHHHHcC-CCEEEEecCc
Q psy2386         116 DITVKHRIGIDDINSYDFVRDFVGTVSSAG-CRTFIVHARN  155 (311)
Q Consensus       116 pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G-~~~itvh~Rt  155 (311)
                      ||.+-=+  ..+       .+.+..+.+.| +|.|.+ ||.
T Consensus       282 pvi~~G~--i~~-------~~~ae~~l~~g~~D~V~~-gR~  312 (330)
T d1ps9a1         282 PLVTTNR--IND-------PQVADDILSRGDADMVSM-ARP  312 (330)
T ss_dssp             CEEECSS--CCS-------HHHHHHHHHTTSCSEEEE-STH
T ss_pred             eEEEeCC--CCC-------HHHHHHHHHCCCcchhHh-hHH
Confidence            9876222  222       35566666666 887766 664

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.19  E-value=0.32  Score=43.17  Aligned_cols=65  Identities=18%  Similarity=0.314  Sum_probs=48.1

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhhcCEEEEe
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNYIDGVMLG  214 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~adgVmig  214 (311)
                      .+.+..+.++|+|.|+|..-.    |++-        --.+.++++++.+ ++|||+ |+|.|++-+..+ ..||+|-+|
T Consensus       118 ~~r~~~l~~aGvd~ivID~A~----Gh~~--------~~i~~lK~ir~~~-~~~vIa-GNVaT~e~~~~l-~gaD~VkVG  182 (368)
T d2cu0a1         118 IKRAIELDKAGVDVIVVDTAH----AHNL--------KAIKSMKEMRQKV-DADFIV-GNIANPKAVDDL-TFADAVKVG  182 (368)
T ss_dssp             HHHHHHHHHTTCSEEEEECSC----CCCH--------HHHHHHHHHHHTC-CSEEEE-EEECCHHHHTTC-TTSSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEecCcc----cchh--------hhhhhhhhhhhhc-ccceee-ccccCHHHHHhh-hcCcceeec
Confidence            355778889999999987443    2221        1246788999988 589887 999999987543 359999887

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=0.9  Score=37.68  Aligned_cols=145  Identities=12%  Similarity=0.166  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHcCCCEEEeccC--------------------------------------------C--Cccc-cccCccc
Q psy2386          60 LAKSAKIIQKWGYDEINLNCG--------------------------------------------C--PSNR-VQNGFFG   92 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~g--------------------------------------------C--P~~~-v~~~~~G   92 (311)
                      ..+||+.+.++|+|+|-+|.=                                            |  |-+. ..+...|
T Consensus        26 ~~~~a~~~~~~GadgITvH~R~DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~e~i~ia~~~kP~qvtLVPe~r~elTTegG  105 (242)
T d1m5wa_          26 PVQAAFIAEQAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVTTEGG  105 (242)
T ss_dssp             HHHHHHHHHTTTCSEEEEECCTTCSSSCHHHHHHHHHHCSSEEEEEECSSHHHHHHHHHHCCSEEEECCCCSSCSSCCSC
T ss_pred             HHHHHHHHHHcCCCeEEeCCCCCccccchHHHHHHHHHhhcccccccccchhHHHHHHHhccceEEEeecCccccCcCCc
Confidence            667888999999999888731                                            2  3221 2244456


Q ss_pred             CcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcC
Q psy2386          93 AILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPIL  172 (311)
Q Consensus        93 ~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~  172 (311)
                      =-+..+.+.+..+++.+++. ++.||+=+-+     +     .+-++.+.+.|+|.|-+|.... ..-+..+ +......
T Consensus       106 ld~~~~~~~L~~~i~~l~~~-girvSLFiDp-----d-----~~~i~~a~~lGad~IElhTG~Y-a~a~~~~-~~~~el~  172 (242)
T d1m5wa_         106 LDVAGQRDKMRDACKRLADA-GIQVSLFIDA-----D-----EEQIKAAAEVGAPFIEIHTGCY-ADAKTDA-EQAQELA  172 (242)
T ss_dssp             CCSGGGHHHHHHHHHHHHHT-TCEEEEEECS-----C-----HHHHHHHHHTTCSEEEEECHHH-HHCCSHH-HHHHHHH
T ss_pred             eeehhhHHHHHHHHHHHHhc-CCeEEEEecc-----c-----hhhHHHHhhcCcceeeeecccc-cccccch-hhHHHHH
Confidence            67788899999999999885 7888876543     1     3456777999999999995531 1111100 0000000


Q ss_pred             cHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH--hhcCEEEEehhhhh
Q psy2386         173 KYNFVYNLKKDFPELEIIINGGIKTKKEIDLHL--NYIDGVMLGREAYK  219 (311)
Q Consensus       173 ~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l--~~adgVmigRa~l~  219 (311)
                      .+....+.+... .+-|=+.=|+. .+.+..+.  ...+=|-||-+++.
T Consensus       173 ~i~~aa~~A~~l-GL~VnAGHgLn-~~Nl~~i~~ip~i~EvsIGHaiI~  219 (242)
T d1m5wa_         173 RIAKAATFAASL-GLKVNAGHGLT-YHNVKAIAAIPEMHELNIGHAIIG  219 (242)
T ss_dssp             HHHHHHHHHHHT-TCEEEEESSCC-TTTHHHHHTCTTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHhc-CCcccCCCCcC-ccchHHHhcCCCCeEEeccHHHHH
Confidence            111222333344 56665554443 23333333  34889999987754

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=86.58  E-value=0.55  Score=41.42  Aligned_cols=69  Identities=12%  Similarity=0.211  Sum_probs=50.2

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      .+.++.+.++|++.+++.....    ++.        .-.+.++.+++.. +++||+ .|+|.|++.++.+++. +|+|-
T Consensus       112 ~~~~~~L~~ag~d~i~IDvAhG----~~~--------~v~~~i~~ir~~~~~~~~Ii-AGNVaT~e~~~~L~~aGaD~vk  178 (362)
T d1pvna1         112 RERVPALVEAGADVLCIDSSDG----FSE--------WQKITIGWIREKYGDKVKVG-AGNIVDGEGFRYLADAGADFIK  178 (362)
T ss_dssp             HHHHHHHHHHTCSEEEECCSCC----CBH--------HHHHHHHHHHHHHGGGSCEE-EEEECSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHhhcCceEEeechhcc----chh--------HHHHHHHHHHHhhccceeee-cccccCHHHHHHHHHhCCcEEE
Confidence            5778899999999999864432    211        1235677776544 346665 5899999999999977 99999


Q ss_pred             Eehh
Q psy2386         213 LGRE  216 (311)
Q Consensus       213 igRa  216 (311)
                      +|=|
T Consensus       179 VGIG  182 (362)
T d1pvna1         179 IGIG  182 (362)
T ss_dssp             ECSS
T ss_pred             eccc
Confidence            9844

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.39  E-value=1.3  Score=34.70  Aligned_cols=93  Identities=15%  Similarity=0.218  Sum_probs=58.7

Q ss_pred             HHHHHHHhccc--cceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcH-HHHHH
Q psy2386         103 SDCIKAMRDSV--EIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKY-NFVYN  179 (311)
Q Consensus       103 ~~iv~~v~~~~--~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~-~~i~~  179 (311)
                      .+.++.+++..  ..++.|-++.           .+-+..+.++|+|.|-+..-+.               -+. +.+..
T Consensus        65 ~~~~~~~~~~~~~~~~I~VEv~~-----------~~e~~~a~~~g~d~i~LDn~~p---------------e~~k~~~~~  118 (170)
T d1o4ua1          65 ERAVQEVRKIIPFTTKIEVEVEN-----------LEDALRAVEAGADIVMLDNLSP---------------EEVKDISRR  118 (170)
T ss_dssp             HHHHHHHHTTSCTTSCEEEEESS-----------HHHHHHHHHTTCSEEEEESCCH---------------HHHHHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEEEeCc-----------HHHHHHHHhcCccEEEEcCcCh---------------hhHhHHHHH
Confidence            45666666654  3456665442           2345667789999987753321               122 23445


Q ss_pred             HHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEEehhhhhCCc
Q psy2386         180 LKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVMLGREAYKNPF  222 (311)
Q Consensus       180 i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmigRa~l~~P~  222 (311)
                      ++...|++.+-++|||+ ++.+.++... +|.+.+|.-...-|+
T Consensus       119 lk~~~~~i~lEaSGGI~-~~ni~~~a~~GVD~Is~g~lt~~a~~  161 (170)
T d1o4ua1         119 IKDINPNVIVEVSGGIT-EENVSLYDFETVDVISSSRLTLQEVF  161 (170)
T ss_dssp             HHHHCTTSEEEEEECCC-TTTGGGGCCTTCCEEEEGGGTSSCCC
T ss_pred             HHhhCCcEEEEEECCCC-HHHHHHHHHcCCCEEEcCccccCCCC
Confidence            55555678999999997 4666666554 999999965554444

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=85.39  E-value=6.5  Score=30.25  Aligned_cols=126  Identities=13%  Similarity=0.056  Sum_probs=68.1

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEeccCCCCCcHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRIGIDDINSYD  132 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~g~~~~~~~~  132 (311)
                      -.+.++..+.++.+.+ ++|.++++  +|...  .  +|      +    ++++.+++.. +.++....-.. +.     
T Consensus        10 ~~~~~~~~~~~~~~~~-~vdiikig--~~~~~--~--~G------~----~~i~~l~~~~~~~~i~~d~k~~-d~-----   66 (213)
T d1q6oa_          10 NQTMDSAYETTRLIAE-EVDIIEVG--TILCV--G--EG------V----RAVRDLKALYPHKIVLADAKIA-DA-----   66 (213)
T ss_dssp             CSSHHHHHHHHHHHGG-GCSEEEEC--HHHHH--H--HC------T----HHHHHHHHHCTTSEEEEEEEEC-SC-----
T ss_pred             CCCHHHHHHHHHhcCC-CccEEEeC--eeccc--c--CC------H----HHHHHHHHhcccccceeEEeec-cc-----
Confidence            3456666666665554 58999987  33221  1  22      2    3455555543 45665443332 22     


Q ss_pred             HHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         133 FVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       133 ~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                       ...+++.+.++|+|.+|+|+-..       .       -..+.+.+..+.......+..-...+.+++....+. ++.+
T Consensus        67 -~~~~~~~~~~~gad~vtvh~~~g-------~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T d1q6oa_          67 -GKILSRMCFEANADWVTVICCAD-------I-------NTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQV  131 (213)
T ss_dssp             -HHHHHHHHHHTTCSEEEEETTSC-------H-------HHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEE
T ss_pred             -hHHHHHHHHHcCCCEEEEeccCC-------c-------hHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHH
Confidence             12356777899999999996532       0       012222223333322233344455677777777765 7777


Q ss_pred             EEehhh
Q psy2386         212 MLGREA  217 (311)
Q Consensus       212 migRa~  217 (311)
                      .+.++.
T Consensus       132 ~~~~~~  137 (213)
T d1q6oa_         132 VYHRSR  137 (213)
T ss_dssp             EEECCH
T ss_pred             HHHHhc
Confidence            665543

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=85.39  E-value=7.5  Score=32.51  Aligned_cols=135  Identities=8%  Similarity=0.029  Sum_probs=86.0

Q ss_pred             CCCCC-eEEEecCC---CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCc--------ccC-------cccCChHHHH
Q psy2386          43 AEEHP-IAFQVGDN---EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGF--------FGA-------ILMTKPLLVS  103 (311)
Q Consensus        43 ~~~~p-~~~Ql~g~---~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~--------~G~-------~Ll~~~~~~~  103 (311)
                      ++..| +|.=++-+   |.+...+.++.+.++|+|.|-..+-.|-....++.        .+-       .+.-..+...
T Consensus        12 ~~~~~~IIAEig~nH~G~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~   91 (295)
T d1vlia2          12 KDAPVFIIAEAGINHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWIL   91 (295)
T ss_dssp             TTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHH
T ss_pred             CCCCeEEEEEecCCcCccHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhh
Confidence            33444 45566533   46666666667778999999998765443322211        000       1122445566


Q ss_pred             HHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHh
Q psy2386         104 DCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKD  183 (311)
Q Consensus       104 ~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~  183 (311)
                      ++.+.+++ .++++.+  .+ ++        .+-+..+.+.|++.+-|+....               .|++++.++.+.
T Consensus        92 ~l~~~~k~-~gi~~~~--s~-fd--------~~s~~~l~~l~~~~iKIaS~d~---------------~n~~Li~~i~k~  144 (295)
T d1vlia2          92 PLLDYCRE-KQVIFLS--TV-CD--------EGSADLLQSTSPSAFKIASYEI---------------NHLPLLKYVARL  144 (295)
T ss_dssp             HHHHHHHH-TTCEEEC--BC-CS--------HHHHHHHHTTCCSCEEECGGGT---------------TCHHHHHHHHTT
T ss_pred             hHHHHhhh-cccceee--ec-cc--------ceeeeeecccCcceeEeccccc---------------ccHHHHHHHHhc
Confidence            67666655 3666544  11 22        2445667899999999987763               489999999875


Q ss_pred             CCCCeEEEecCCCCHHHHHHHHh
Q psy2386         184 FPELEIIINGGIKTKKEIDLHLN  206 (311)
Q Consensus       184 ~~~ipvi~nGgI~s~~da~~~l~  206 (311)
                        ..||+.+-|-.+.+++.+..+
T Consensus       145 --~kpviistG~~~~~ei~~~~~  165 (295)
T d1vlia2         145 --NRPMIFSTAGAEISDVHEAWR  165 (295)
T ss_dssp             --CSCEEEECTTCCHHHHHHHHH
T ss_pred             --CCchheechhhhhhhHHHHHh
Confidence              589988877788888877664

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=85.35  E-value=3  Score=34.57  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=55.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHH
Q psy2386          54 DNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDF  133 (311)
Q Consensus        54 g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~  133 (311)
                      ..+++.+.+.++.+.++|+|.|-|-          +-.|+.   .|+.+.++++.+++..+..+.+-+-...+..-    
T Consensus       144 ~~~~~~~~~~~~~~~~~g~~~I~l~----------DT~G~~---~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~----  206 (289)
T d1nvma2         144 MIPAEKLAEQGKLMESYGATCIYMA----------DSGGAM---SMNDIRDRMRAFKAVLKPETQVGMHAHHNLSL----  206 (289)
T ss_dssp             SSCHHHHHHHHHHHHHHTCSEEEEE----------CTTCCC---CHHHHHHHHHHHHHHSCTTSEEEEECBCTTSC----
T ss_pred             ccCchhhhHHHHhhccccceeeeec----------chhhcc---cchhHHHHHHHHHHHhcccccceeeechHHHH----
Confidence            4578889999999999999988773          456654   59999999999998764323333344433332    


Q ss_pred             HHHHHHHHHHcCCCEEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIV  151 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itv  151 (311)
                      ...-+....++|++.|..
T Consensus       207 a~an~l~A~~~G~~~id~  224 (289)
T d1nvma2         207 GVANSIVAVEEGCDRVDA  224 (289)
T ss_dssp             HHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHhCCcEeec
Confidence            223344556899998743

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=85.06  E-value=8.7  Score=31.39  Aligned_cols=124  Identities=9%  Similarity=0.122  Sum_probs=77.3

Q ss_pred             CCCCeEEEecC--------CCHHHHHHHHHHHHHcC-CCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhcccc
Q psy2386          44 EEHPIAFQVGD--------NEPKKLAKSAKIIQKWG-YDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVE  114 (311)
Q Consensus        44 ~~~p~~~Ql~g--------~~~~~~~~aa~~~~~~g-~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~  114 (311)
                      .+.|+++=+-.        .+.+++.+.-+.+.+.| +|.|||-.                -.+.+.+.++++..++. +
T Consensus        73 ~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl----------------~~~~~~~~~li~~a~~~-~  135 (252)
T d1gqna_          73 PDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLEL----------------FTGDADVKATVDYAHAH-N  135 (252)
T ss_dssp             TTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEG----------------GGCHHHHHHHHHHHHHT-T
T ss_pred             CCCCEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccc----------------cccHHHHHHHHHHhhcC-C
Confidence            35788885542        25677777778888878 79999962                23445667777776553 5


Q ss_pred             ceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEe--cCccccccCCCCcCCCCCcCc----HHHHHHHHHhCCCCe
Q psy2386         115 IDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVH--ARNAFLKKLNPKQNRKIPILK----YNFVYNLKKDFPELE  188 (311)
Q Consensus       115 ~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh--~Rt~~~~G~~g~~~~~~~~~~----~~~i~~i~~~~~~ip  188 (311)
                      ..+.+-.- .++...+.+++.++.+.+.+.|+|.+-+-  +++.               .|    +....++++..+++|
T Consensus       136 ~~vI~S~H-df~~TP~~~~l~~~~~~m~~~gaDivKia~~a~~~---------------~D~~~ll~~~~~~~~~~~~~P  199 (252)
T d1gqna_         136 VYVVMSNH-DFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSK---------------HDVLTLLTATLEMQQHYADRP  199 (252)
T ss_dssp             CEEEEEEE-ESSCCCCHHHHHHHHHHHHHTTCSEEEEEECCSSH---------------HHHHHHHHHHHHHHHHTCSSC
T ss_pred             CeEEEEec-CCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCH---------------HHHHHHHHHHHHHHHhCCCCC
Confidence            55555432 34444445578899999999999987654  3321               12    234455555544677


Q ss_pred             EE--EecCCCCHHH
Q psy2386         189 II--INGGIKTKKE  200 (311)
Q Consensus       189 vi--~nGgI~s~~d  200 (311)
                      +|  +.|......-
T Consensus       200 ~I~~~MG~~G~~SR  213 (252)
T d1gqna_         200 VITMSMAKEGVISR  213 (252)
T ss_dssp             CEEEECTTTTHHHH
T ss_pred             EEEEecCCcchhHH
Confidence            65  5565554443

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.00  E-value=3.9  Score=29.36  Aligned_cols=62  Identities=11%  Similarity=0.132  Sum_probs=45.8

Q ss_pred             HHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCE
Q psy2386         136 DFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDG  210 (311)
Q Consensus       136 e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adg  210 (311)
                      +..+.+.+...|.|.+.-+-   .+.+          -++.++++++..|++|||...+..+.+++.+.++. ++.
T Consensus        38 ~a~~~l~~~~~dlii~D~~m---p~~~----------G~el~~~l~~~~~~~piI~~t~~~~~~~~~~a~~~Ga~d  100 (123)
T d1krwa_          38 EVLAALASKTPDVLLSDIRM---PGMD----------GLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFD  100 (123)
T ss_dssp             HHHHHHTTCCCSEEEECCSS---SSST----------THHHHHHHHHHSSSCCEEESCCCSCHHHHHHHHHHTEEE
T ss_pred             HHHHHHHhCCCCEEEehhhc---CCch----------HHHHHHHHHHhCCCCeEEEEecCCCHHHHHHHHHcCCCe
Confidence            44555666677877775432   2222          36889999988888999999999999999998865 654

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=84.62  E-value=7.8  Score=30.47  Aligned_cols=173  Identities=10%  Similarity=0.115  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHHHhCCCcEEEecceec----cccc-CCchhccccCCCCCCeEEEec-CCCHHHHHHHHHHHHHcCCCEE
Q psy2386           2 NLTDRHCRMFHRQITRYSWLYTEMFTT----QAIL-GNKKHCLDFNAEEHPIAFQVG-DNEPKKLAKSAKIIQKWGYDEI   75 (311)
Q Consensus         2 ~~td~~fR~l~~~~g~~~l~~temv~a----~~l~-~~~~~~l~~~~~~~p~~~Ql~-g~~~~~~~~aa~~~~~~g~d~I   75 (311)
                      |+|+..==.+|.++|+.   |-.|+..    +.+- ....++....+. ....|=++ ..+++...+.   +...+.|.|
T Consensus         8 Git~~~da~~~~~~gad---~iGfI~~~~SpR~Vs~~~a~~i~~~~~~-~~~~V~V~v~~~~~~i~~~---~~~~~~~~v   80 (205)
T d1nsja_           8 GITNLEDALFSVESGAD---AVGFVFYPKSKRYISPEDARRISVELPP-FVFRVGVFVNEEPEKILDV---ASYVQLNAV   80 (205)
T ss_dssp             CCCSHHHHHHHHHHTCS---EEEEECCTTCTTBCCHHHHHHHHHHSCS-SSEEEEEESSCCHHHHHHH---HHHHTCSEE
T ss_pred             CCCcHHHHHHHHhCCCC---EEeEeccCCCCCccCHHHHHHHHhhhcc-cceeeccccccHHHHHHhh---hhhccccch
Confidence            78888888899999853   2223321    1111 111122222232 23333334 4455555433   456689999


Q ss_pred             EeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386          76 NLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus        76 diN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      .+| |.               .+++...    .++...  ++...+..  .+.      .++ ....+.-.+.+.+....
T Consensus        81 Qlh-g~---------------e~~~~~~----~~~~~~--~~~~~~~~--~~~------~~~-~~~~~~~~~~~l~d~~~  129 (205)
T d1nsja_          81 QLH-GE---------------EPIELCR----KIAERI--LVIKAVGV--SNE------RDM-ERALNYREFPILLDTKT  129 (205)
T ss_dssp             EEC-SC---------------CCHHHHH----HHHTTS--EEEEEEEE--SSH------HHH-HHHGGGTTSCEEEEESC
T ss_pred             hcc-ch---------------hhHHHHh----hcccce--eeeeeccc--cch------HHH-HHHhhcccceeeecccc
Confidence            998 21               2334433    334432  33222222  111      122 22333334556665443


Q ss_pred             cccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh--cCEEEEehhhhhCCc
Q psy2386         156 AFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY--IDGVMLGREAYKNPF  222 (311)
Q Consensus       156 ~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~--adgVmigRa~l~~P~  222 (311)
                      . ..|-+|.      ..||+.+..+....  .|++..|||. ++.+.++++.  ++||=+.+|+=..|-
T Consensus       130 ~-~~GGtG~------~~dw~~~~~~~~~~--~~~~LAGGl~-~~Nv~~ai~~~~p~gvDvsSgvE~~~G  188 (205)
T d1nsja_         130 P-EYGGSGK------TFDWSLILPYRDRF--RYLVLSGGLN-PENVRSAIDVVRPFAVDVSSGVEAFPG  188 (205)
T ss_dssp             S-SSSSCCS------CCCGGGTGGGGGGS--SCEEEESSCC-TTTHHHHHHHHCCSEEEESGGGEEETT
T ss_pred             c-cCCCCCc------ccchhhcccchhcc--cceeeecCCC-HHHHHHHHHHhCCCEEEEcCcccCCCC
Confidence            3 2232333      37999888877653  5899999996 5777777753  899999988854443

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.58  E-value=2.3  Score=35.24  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++ ..+.||++|.|-.-..+++|            +++.+..+++.+ ++||.-.==|-++-++.+.... ||+|.
T Consensus        65 ~~~~a~-~~~~gA~aiSVLTd~~~F~G------------s~~dl~~v~~~~-~~PiLrKDFIid~~QI~ea~~~GADaiL  130 (247)
T d1a53a_          65 PIEYSK-FMERYAVGLSILTEEKYFNG------------SYETLRKIASSV-SIPILMKDFIVKESQIDDAYNLGADTVL  130 (247)
T ss_dssp             HHHHHH-HHTTTCSEEEEECCCTTTCC------------CHHHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHH-HHHhCCCeEEEecCcccccc------------chHHHHHHHhcc-ccceeecccccChHHHHHHHHhhcchhh
Confidence            356664 66789999988643333444            678899999998 8999999999999999988876 99999


Q ss_pred             Eehhhhh
Q psy2386         213 LGREAYK  219 (311)
Q Consensus       213 igRa~l~  219 (311)
                      +=-+++.
T Consensus       131 LI~~~L~  137 (247)
T d1a53a_         131 LIVKILT  137 (247)
T ss_dssp             EEGGGSC
T ss_pred             hhhhhcc
Confidence            8766663

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=84.34  E-value=9.5  Score=31.24  Aligned_cols=122  Identities=9%  Similarity=0.140  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCCcHHHHHHH
Q psy2386          58 KKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDINSYDFVRDF  137 (311)
Q Consensus        58 ~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~~~~~~~e~  137 (311)
                      +.|.+-++.+.++|+|+|=+.+--|...           =|.+.+.++++...   +.|+|.= | -+|....   ..+-
T Consensus        72 ~~M~~di~~~k~~G~dGvV~G~L~~dg~-----------iD~~~~~~L~~~a~---~l~vTFH-R-AfD~~~d---~~~a  132 (247)
T d1twda_          72 AAILEDVRTVRELGFPGLVTGVLDVDGN-----------VDMPRMEKIMAAAG---PLAVTFH-R-AFDMCAN---PLYT  132 (247)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCBCTTSS-----------BCHHHHHHHHHHHT---TSEEEEC-G-GGGGCSC---HHHH
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEECCCCC-----------ccHHHHHHHHHHhc---ccCeeee-h-hhhhhCC---HHHH
Confidence            4567777788899999998854333221           36778888877754   4566552 3 3444332   3566


Q ss_pred             HHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEE
Q psy2386         138 VGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGV  211 (311)
Q Consensus       138 ~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgV  211 (311)
                      ++.|.+.|++.|--+|....            -....+.++++.+.....-|+..|||+. +.+.++++. ++-+
T Consensus       133 l~~Li~lG~~rILTSGg~~~------------a~~G~~~L~~L~~~a~~~iIm~GgGI~~-~Ni~~l~~~g~~e~  194 (247)
T d1twda_         133 LNNLAELGIARVLTSGQKSD------------ALQGLSKIMELIAHRDAPIIMAGAGVRA-ENLHHFLDAGVLEV  194 (247)
T ss_dssp             HHHHHHHTCCEEEECTTSSS------------TTTTHHHHHHHHTSSSCCEEEEESSCCT-TTHHHHHHHTCSEE
T ss_pred             HHHHHhcCCCeEeccCCCCc------------hhHHHHHHHHHHHhcCCcEEEecCCCCH-HHHHHHHHcCCCEE
Confidence            78889999999877765320            1124678888876543344778888875 455555543 4433

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.78  E-value=5.3  Score=30.81  Aligned_cols=67  Identities=10%  Similarity=0.121  Sum_probs=46.2

Q ss_pred             HHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhC-CCCeEEEecCCCCHHHHHHHHhh-cCEEEEe
Q psy2386         137 FVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDF-PELEIIINGGIKTKKEIDLHLNY-IDGVMLG  214 (311)
Q Consensus       137 ~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~-~~ipvi~nGgI~s~~da~~~l~~-adgVmig  214 (311)
                      -++.+.++|+|.|.+..-+                  .+.+++..+.. +++.+-++|||+ ++.+.++... +|.+.+|
T Consensus        91 ~~~~a~~~g~diImLDN~~------------------pe~~~~av~~i~~~~~lEaSGgI~-~~ni~~ya~~GVD~IS~g  151 (167)
T d1qapa1          91 ELDDALKAGADIIMLDNFN------------------TDQMREAVKRVNGQARLEVSGNVT-AETLREFAETGVDFISVG  151 (167)
T ss_dssp             HHHHHHHTTCSEEEESSCC------------------HHHHHHHHHTTCTTCCEEECCCSC-HHHHHHHHHTTCSEEECS
T ss_pred             HHHHHHhcCCcEEEecCCC------------------HHHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHcCCCEEECC
Confidence            3556678899999774332                  24445444443 468888999996 6888888766 9999999


Q ss_pred             hhhhhCCc
Q psy2386         215 REAYKNPF  222 (311)
Q Consensus       215 Ra~l~~P~  222 (311)
                      .-.+.=||
T Consensus       152 alt~~a~~  159 (167)
T d1qapa1         152 ALTKHVRA  159 (167)
T ss_dssp             HHHHEEEC
T ss_pred             cccCCCCc
Confidence            66554444

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.73  E-value=3.6  Score=32.71  Aligned_cols=87  Identities=15%  Similarity=0.201  Sum_probs=52.5

Q ss_pred             eEEEecCCCHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCC
Q psy2386          48 IAFQVGDNEPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDD  127 (311)
Q Consensus        48 ~~~Ql~g~~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~  127 (311)
                      +++-|=-.+.++..+-++.+.+. +++|++|+  |.-.    .+|      +    +.++++++..+.||..-+.+. |-
T Consensus         5 i~lAlD~~~~~~a~~l~~~~~~~-v~~iKig~--~l~~----~~G------~----~~v~~l~~~~~~~i~~D~K~~-DI   66 (212)
T d1km4a_           5 LILAMDLMNRDDALRVTGEVREY-IDTVKIGY--PLVL----SEG------M----DIIAEFRKRFGCRIIADFAVA-DI   66 (212)
T ss_dssp             EEEEECCSSHHHHHHHHHHHTTT-CSEEEEEH--HHHH----HHC------T----HHHHHHHHHHCCEEEEEEEEC-SC
T ss_pred             eEEEecCCCHHHHHHHHHHhCCC-CcEEEECH--HHHH----hcC------H----HHHHHHHHhcccceehhhhhh-cc
Confidence            44444445666665555555543 78999862  2211    122      2    345566666677887766654 32


Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEecCc
Q psy2386         128 INSYDFVRDFVGTVSSAGCRTFIVHARN  155 (311)
Q Consensus       128 ~~~~~~~~e~~~~l~~~G~~~itvh~Rt  155 (311)
                      .++   ....++.+.+.|+|++|||+-.
T Consensus        67 g~t---~~~~~~~~~~~gad~~TVh~~~   91 (212)
T d1km4a_          67 PET---NEKICRATFKAGADAIIVHGFP   91 (212)
T ss_dssp             HHH---HHHHHHHHHHTTCSEEEEESTT
T ss_pred             ccH---HHHhHhhhccccccEEEEeccC
Confidence            221   2456777889999999999764

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=83.39  E-value=1.5  Score=36.52  Aligned_cols=74  Identities=11%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEE
Q psy2386         134 VRDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVM  212 (311)
Q Consensus       134 ~~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVm  212 (311)
                      ..++++..+ .|+++|.|..-..+++|            +++.+.++++.+ ++||.--==|.++-++.+.... ||+|.
T Consensus        63 ~~~~a~~ye-~GA~aiSVLTd~~~F~G------------s~~~l~~vr~~~-~~PiLrKDFIid~~QI~ea~~~GADaiL  128 (251)
T d1i4na_          63 LEDFIRMYD-ELADAISILTEKHYFKG------------DPAFVRAARNLT-CRPILAKDFYIDTVQVKLASSVGADAIL  128 (251)
T ss_dssp             HHHHHHHHH-HHCSEEEEECCCSSSCC------------CTHHHHHHHTTC-CSCEEEECCCCSTHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHh-cCCcceEEecccCCCCC------------CHHHHHHHhhcc-cCchhhhhhhhCHHHHHHHHhhccceEE
Confidence            568888775 69999999865444444            568889999887 8999999889999999888765 99998


Q ss_pred             EehhhhhCC
Q psy2386         213 LGREAYKNP  221 (311)
Q Consensus       213 igRa~l~~P  221 (311)
                      +=-+++.+.
T Consensus       129 LI~~~L~~~  137 (251)
T d1i4na_         129 IIARILTAE  137 (251)
T ss_dssp             EEGGGSCHH
T ss_pred             eecccccHH
Confidence            876666543

>d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.36  E-value=2.5  Score=36.55  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=69.9

Q ss_pred             CHHHHHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccc-cceeEEEEec---------cC
Q psy2386          56 EPKKLAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSV-EIDITVKHRI---------GI  125 (311)
Q Consensus        56 ~~~~~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~-~~pvsvKiR~---------g~  125 (311)
                      +.+.+.+.++.+.+.|...|-| +|.|.....|+..|+.-.+.-.++.+.++++++.. ++-|.+-+-+         |.
T Consensus        67 Sid~L~~eie~~~~lGI~av~L-F~vpi~~~~Kd~~gseA~n~~~lv~rAIr~iK~~fpdl~vi~DVcLcpYT~hGHcGi  145 (340)
T d1h7na_          67 GVNRLKDYLKPLVAKGLRSVIL-FGVPLIPGTKDPVGTAADDPAGPVIQGIKFIREYFPELYIICDVCLCEYTSHGHCGV  145 (340)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEE-EEECCSTTCCBTTCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSC
T ss_pred             CHHHHHHHHHHHHHcCCCeeec-CCCCCCCCCCCCcchhhhhhccHHHHHHHHHHhhhcccEEEeccccchhhhhccccc
Confidence            5688888888889999999988 57776555688888888777779999999999876 5556666543         11


Q ss_pred             ------CCC-CcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386         126 ------DDI-NSYDFVRDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus       126 ------~~~-~~~~~~~e~~~~l~~~G~~~itvh  152 (311)
                            .++ .+.+.+.+.+....++|+|.|.-.
T Consensus       146 l~~~~~innd~Tl~~L~k~Al~~A~AGaDiVAPS  179 (340)
T d1h7na_         146 LYDDGTINRERSVSRLAAVAVNYAKAGAHCVAPS  179 (340)
T ss_dssp             BCTTSSBCHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             ccccccccchHHHHHHHHHHHHHHHccCCccccc
Confidence                  011 133445566666779999999854

>d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.76  E-value=5.9  Score=33.36  Aligned_cols=95  Identities=11%  Similarity=0.052  Sum_probs=66.9

Q ss_pred             CCCCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEe--ccC----CCccccccCcccCcccCChHHHHHHHHHHhcc
Q psy2386          43 AEEHPIAFQVG----DNEPKKLAKSAKIIQKWGYDEINL--NCG----CPSNRVQNGFFGAILMTKPLLVSDCIKAMRDS  112 (311)
Q Consensus        43 ~~~~p~~~Ql~----g~~~~~~~~aa~~~~~~g~d~Idi--N~g----CP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~  112 (311)
                      -.++|++.-+.    |-+|+++++.+..+..-|+|.|-=  |+.    ||.            .++.+.+.+.++...+.
T Consensus        16 v~~RPL~~tiiKP~~Gls~~~~a~~~~~~~~GGvD~IKDDe~l~~~~~~p~------------~eRv~~~~~a~~~a~~~   83 (291)
T d2d69a1          16 VKDRPLTATVPKPKMGWSVEEYAEIAYELWSGGIDLLKDDENFTSFPFNRF------------EERVRKLYRVRDRVEAE   83 (291)
T ss_dssp             CCSSCEEEECCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSCBTTBCH------------HHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEeeeCCcCCCCHHHHHHHHHHHHccCCceecCCccCCCCCCCCH------------HHHHHHHHHHHHHHHHH
Confidence            34799998886    889999999999999989998852  332    443            34455666666666666


Q ss_pred             ccceeEEEEeccCCCCCcHHHHHHHHHHHHHcCCCEEEEec
Q psy2386         113 VEIDITVKHRIGIDDINSYDFVRDFVGTVSSAGCRTFIVHA  153 (311)
Q Consensus       113 ~~~pvsvKiR~g~~~~~~~~~~~e~~~~l~~~G~~~itvh~  153 (311)
                      ++..+..=..+  +.  +.+++.+-++.+.++|+..+.|..
T Consensus        84 tG~~~~Ya~Ni--t~--~~~~m~~ra~~~~~~G~~~vmi~~  120 (291)
T d2d69a1          84 TGETKEYLINI--TG--PVNIMEKRAEMVANEGGQYVMIDI  120 (291)
T ss_dssp             HSSCCEEECBC--CS--SHHHHHHHHHHHHHHTCCEEEEEH
T ss_pred             hCCeeEEEEec--cC--CHHHHHHHHHHHHHcCCCEEEecc
Confidence            66655443343  22  244678889999999999987753

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=82.66  E-value=4.4  Score=33.29  Aligned_cols=85  Identities=16%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCEEEe------------ccCCCccccccCcccCcc-cCChHHHHHHHHHHhccccceeEEEE
Q psy2386          55 NEPKKLAKSAKIIQKWGYDEINL------------NCGCPSNRVQNGFFGAIL-MTKPLLVSDCIKAMRDSVEIDITVKH  121 (311)
Q Consensus        55 ~~~~~~~~aa~~~~~~g~d~Idi------------N~gCP~~~v~~~~~G~~L-l~~~~~~~~iv~~v~~~~~~pvsvKi  121 (311)
                      .||.+..+||+.+.+-||...=-            ++||..-.--..--||.. +.+|..+..|++.    .++||.|.-
T Consensus       109 PD~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~n~~~l~~i~~~----~~vPvIvDA  184 (251)
T d1xm3a_         109 PDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQ----AKVPVIVDA  184 (251)
T ss_dssp             BCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHH----CSSCBEEES
T ss_pred             CCHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcCCCcCChHHHHHHHhc----CCccEEEec
Confidence            35677778888777777765432            356754332222223322 5788887766654    678999976


Q ss_pred             eccCCCCCcHHHHHHHHHHHHHcCCCEEEEe
Q psy2386         122 RIGIDDINSYDFVRDFVGTVSSAGCRTFIVH  152 (311)
Q Consensus       122 R~g~~~~~~~~~~~e~~~~l~~~G~~~itvh  152 (311)
                      -+|..        .+ +...-+.|+|+|-+.
T Consensus       185 GIG~p--------Sd-Aa~AMElG~daVLvN  206 (251)
T d1xm3a_         185 GIGSP--------KD-AAYAMELGADGVLLN  206 (251)
T ss_dssp             CCCSH--------HH-HHHHHHTTCSEEEES
T ss_pred             CCCCH--------HH-HHHHHHccCCEEEec
Confidence            66632        12 445578999999875

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=82.19  E-value=2.4  Score=35.26  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHhh-cCEEEE
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKKDFPELEIIINGGIKTKKEIDLHLNY-IDGVML  213 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~~~~~ipvi~nGgI~s~~da~~~l~~-adgVmi  213 (311)
                      .++++ ..+.|+++|.|..-..+++|            +++.+..+++.+ ++||.--==|.++.++.+.... ||+|.+
T Consensus        71 ~~~a~-~~~~gA~aiSVLTe~~~F~G------------s~~~l~~v~~~~-~~PiLrKDFIid~~QI~ear~~GADavLL  136 (254)
T d1piia2          71 ARIAA-IYKHYASAISVLTDEKYFQG------------SFNFLPIVSQIA-PQPILCKDFIIDPYQIYLARYYQADACLL  136 (254)
T ss_dssp             HHHHH-HHTTTCSEEEEECCSTTTCC------------CTTHHHHHHHHC-CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHH-HHHhccCceEEecccccCCC------------CHHHHHHHHhcc-ccccchhcccCcHHHHHHHHhhccchhhh
Confidence            45554 77899999999765544555            457788889888 7999888888999999988876 999998


Q ss_pred             ehhhhhC
Q psy2386         214 GREAYKN  220 (311)
Q Consensus       214 gRa~l~~  220 (311)
                      =-+++.+
T Consensus       137 I~~~L~~  143 (254)
T d1piia2         137 MLSVLDD  143 (254)
T ss_dssp             ETTTCCH
T ss_pred             hHhhhcc
Confidence            7777654

>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Bacillus subtilis [TaxId: 1423]

Probab=81.05  E-value=3.7  Score=33.90  Aligned_cols=102  Identities=16%  Similarity=0.208  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHcCCCEEEeccCCCccccccCcccCcccCChHHHHHHHHHHhccccceeEEEEeccCCCCC-----cHHHH
Q psy2386          60 LAKSAKIIQKWGYDEINLNCGCPSNRVQNGFFGAILMTKPLLVSDCIKAMRDSVEIDITVKHRIGIDDIN-----SYDFV  134 (311)
Q Consensus        60 ~~~aa~~~~~~g~d~IdiN~gCP~~~v~~~~~G~~Ll~~~~~~~~iv~~v~~~~~~pvsvKiR~g~~~~~-----~~~~~  134 (311)
                      +.+..+.+.+.||+.|||+-|.            .-+ +.+.-.++++.+++. ..   |=--.|+.+.+     +.++.
T Consensus        88 ~~~y~~~~~~lGf~~iEiSdg~------------i~i-~~~~~~~~I~~~~~~-~~---V~sEvG~K~~~~~~~~~~~~~  150 (249)
T d1u83a_          88 VNEFHRYCTYFGCEYIEISNGT------------LPM-TNKEKAAYIADFSDE-FL---VLSEVGSKDAELASRQSSEEW  150 (249)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSS------------SCC-CHHHHHHHHHHHTTT-SE---EEEECSCCC------CCSTHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCc------------ccC-CHHHHHHHHHHHHhc-Ce---eccccCCcCccccCCCCHHHH
Confidence            3444566778999999998442            222 334456677777664 32   32345665421     22357


Q ss_pred             HHHHHHHHHcCCCEEEEecCccccccCCCCcCCCCCcCcHHHHHHHHH
Q psy2386         135 RDFVGTVSSAGCRTFIVHARNAFLKKLNPKQNRKIPILKYNFVYNLKK  182 (311)
Q Consensus       135 ~e~~~~l~~~G~~~itvh~Rt~~~~G~~g~~~~~~~~~~~~~i~~i~~  182 (311)
                      ++.++...++|++.|++-+|.....|+..    ..+...++.+.++..
T Consensus       151 i~~~~~~LeaGA~~ViiEarEsg~~Gi~~----~~g~~r~~~i~~ii~  194 (249)
T d1u83a_         151 LEYIVEDMEAGAEKVITEARESGTGGICS----SSGDVRFQIVDDIIS  194 (249)
T ss_dssp             HHHHHHHHHHTEEEEEEC----------------------CCHHHHHT
T ss_pred             HHHHHHHHHCCCceEEeehhccCCCCCcC----CCcchhHHHHHHHHH
Confidence            78889999999999999998642223321    122244556666544