Psyllid ID: psy2466

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220----
Protein Sequence
MNVAGNSLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccEEEcccccccccEEEEccccEEEEEHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
ccccccccEcccccccccccccccccHHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccEEEEEEEccccEEEEcccccccccEEEEccccEEEEEcHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
mnvagnslfdiietepaanedenCLSVQKVLETIKTAWkneklspeilpnkVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFerssdnmylshDELKYAKSYLKSIDNHFDKYlnmlppnlrtleenkklikpdlntYVFLRAGKDVANVYIRdmsenkedefvldegsqhilpyesIAEFVKNNDVQLL
Flexible Loop (DISEMBL)
MNVAGNSLFDIIetepaanedenCLSVQKVLETIKtawkneklspeilpnkvEYIDCMLEQIKQMEENIeklrkddirieihrmeierirfVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHIlpyesiaefvknndvqll
Low Complexity Region (SEG)
MNVAGNSLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDirieihrmeierirFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Disordered region (IsUnstruct)
********FDII*********ENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMS*****EFVLDEGSQHILPYESIAEFV********
Disordered Region (DISOPRED)
***************************QKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQ**********LSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Disordered Region (DISEMBL)
MNVAGNSLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Disordered Region (DISPRO)
*******************E*ENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNVAGNSLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYxxxxxxxxxxxxxxxxxxxxxDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	224	2.2.26 [Sep-21-2011]
Q499W2	223	DNA replication complex G	yes	N/A	0.919	0.923	0.387	7e-40
Q99LZ3	223	DNA replication complex G	yes	N/A	0.924	0.928	0.385	2e-39
Q9BRT9	223	DNA replication complex G	yes	N/A	0.959	0.964	0.344	6e-37
A2VE40	223	DNA replication complex G	yes	N/A	0.959	0.964	0.362	1e-36
Q9P7C8	214	DNA replication complex G	yes	N/A	0.812	0.850	0.273	7e-13
Q2HE71	221	DNA replication complex G	N/A	N/A	0.642	0.651	0.327	1e-12
Q55EA2	211	DNA replication complex G	yes	N/A	0.816	0.867	0.282	1e-11
Q03406	294	DNA replication complex G	yes	N/A	0.861	0.656	0.258	2e-11
Q6CE80	260	DNA replication complex G	yes	N/A	0.776	0.669	0.276	8e-10
Q4IQM6	221	DNA replication complex G	yes	N/A	0.825	0.837	0.260	2e-08

>sp|Q499W2|SLD5_RAT DNA replication complex GINS protein SLD5 OS=Rattus norvegicus GN=Gins4 PE=2 SV=1

 Score =  163 bits (413), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/209 (38%), Positives = 141/209 (67%), Gaps = 3/209 (1%)

Query: 19  NEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIR 78
             +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D++
Sbjct: 15  GSEEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGDLK 74

Query: 79  IEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHDELKYAKSYL 137
           + IHRME+ERIR+V++SYLR R+ KIEKF   I++++  R + +   LS +E  +AK Y+
Sbjct: 75  VSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYM 134

Query: 138 KSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDE 196
              + HF +  L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D 
Sbjct: 135 DHTETHFKNVALKHMPPNLQKVDLMRAVPKPDLDSYVFLRVKERQENILVEPEADEQRDY 194

Query: 197 FV-LDEGSQHILPYESIAEFVKNNDVQLL 224
            + L+EGSQH++ Y++IA  V +  VQL+
Sbjct: 195 VIDLEEGSQHLIRYKTIAPLVASGAVQLI 223

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. SLD5 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.
Rattus norvegicus (taxid: 10116)

>sp|Q99LZ3|SLD5_MOUSE DNA replication complex GINS protein SLD5 OS=Mus musculus GN=Gins4 PE=1 SV=1

 Score =  162 bits (409), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 140/210 (66%), Gaps = 3/210 (1%)

Query: 18  ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDI 77
              +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D+
Sbjct: 14  GGSEEMVLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEENLRRAKKGDL 73

Query: 78  RIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHDELKYAKSY 136
           ++ IHRME+ERIR+V++SYLR R+ KIEKF   I++++  RS  +   LS +E  +AK Y
Sbjct: 74  KVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLSPEEFVFAKEY 133

Query: 137 LKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKED 195
           +   + HF +  L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D
Sbjct: 134 MDHTETHFKNVALKHMPPNLQKVDLLRAVPKPDLDSYVFLRVKERQENILVEPEADEQRD 193

Query: 196 EFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             + L+ GSQH++ Y++IA  V +  VQL+
Sbjct: 194 YVIDLEVGSQHLIRYKTIAPLVASGAVQLI 223

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Mus musculus (taxid: 10090)

>sp|Q9BRT9|SLD5_HUMAN DNA replication complex GINS protein SLD5 OS=Homo sapiens GN=GINS4 PE=1 SV=1

 Score =  154 bits (388), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 75/218 (34%), Positives = 146/218 (66%), Gaps = 3/218 (1%)

Query: 10  DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
           D +  +     +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6   DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65

Query: 70  EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHD 128
            + +++D+++ IH+ME+ERIR+V++SYLR R+ KIEKF   +++++  R   +   LS +
Sbjct: 66  RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125

Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
           EL +A+ ++ + +++  +  L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ + 
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185

Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             ++ + D  + L++GSQH++ Y++IA  V +  VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Homo sapiens (taxid: 9606)

>sp|A2VE40|SLD5_BOVIN DNA replication complex GINS protein SLD5 OS=Bos taurus GN=GINS4 PE=2 SV=1

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 143/218 (65%), Gaps = 3/218 (1%)

Query: 10  DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
           D++  +   + +E  L+  ++++ ++ AW NEK +PE+L NK E ++C++EQ++ MEEN+
Sbjct: 6   DLLGQDSDGDSEEVILTPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENL 65

Query: 70  EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEK-FTLDIVQQDFERSSDNMYLSHD 128
           ++ +K D+++ IH+ME+ERIRFV++SYLR R+ KIEK F   + ++   R  +   LS +
Sbjct: 66  KRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREEEPPILSPE 125

Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
           EL +AK +L + + +  D  L  +PPNL+ ++  + + KPDL+ YVFLR  +   N+ + 
Sbjct: 126 ELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLRTVPKPDLDAYVFLRVKERQENILVE 185

Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             ++ + D  + L+EGSQH++ Y ++A  V +  +QL+
Sbjct: 186 PENDEQRDYVIDLEEGSQHLMRYRTVAPLVASGAIQLI 223

The GINS complex plays an essential role in the initiation of DNA replication, and progression of DNA replication forks. GINS4 is important for GINS complex assembly. GINS complex seems to bind preferentially to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q9P7C8|SLD5_SCHPO DNA replication complex GINS protein sld5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sld5 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 106/205 (51%), Gaps = 23/205 (11%)

Query: 32  ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE----KLRKDDIRIEIHRMEIE 87
           E + T W NE+++P++LP   E +  +L++I+   E ++           R  + + E+E
Sbjct: 21  EDLCTQWVNERMAPDLLPFAEEIVSRVLDRIEAQRETLQLAIGTSSATSYRSVLMQTELE 80

Query: 88  RIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDN--MYLSHDELKYAKSYLKSIDNHF- 144
           R++FV+ SY+R RI KI+K+        + +S  N  +YLS  E +Y   + + +  H+ 
Sbjct: 81  RVKFVLRSYMRTRINKIDKYA------QYIQSHPNLLLYLSSPERQYLLRHQQIVHRHYM 134

Query: 145 DKYLNMLPPNLRTLEEN----KKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFV-L 199
           D +L  +P  +  L++       +  PD++T VF      V N  + +     E+E++ L
Sbjct: 135 DSFLREVPAKMNKLDDKVGNLSMVASPDMDTAVFC-----VVNESVEENFRVSENEYITL 189

Query: 200 DEGSQHILPYESIAEFVKNNDVQLL 224
           D+G   IL Y  I+++++   V L+
Sbjct: 190 DKGDVLILRYSVISDYLRLGVVSLI 214

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation and is required for bir1 localization.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2HE71|SLD5_CHAGB DNA replication complex GINS protein SLD5 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=SLD5 PE=3 SV=1

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 21/165 (12%)

Query: 31  LETIKTAWKNEKLSPEILPNKVEYIDCMLEQI----KQMEENIEKLRKD-----DIRIEI 81
           L+ +  AW  E+ +PE+L       D + E+I    KQ  E +E++  D     +  + +
Sbjct: 24  LQELTRAWIAERSAPELLAWPA---DGLFERINDNIKQQIEKVEEMTGDMDPKTNFALIV 80

Query: 82  HRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSID 141
            + E+ER R+++ SYLR RI KI++ TL  +  D  R+     LS  EL YA  +   + 
Sbjct: 81  IQTELERYRYLVRSYLRARIAKIDRHTLHYLSTDDLRAR----LSEMELAYATRHQALLH 136

Query: 142 NHF-DKYLNMLPPNLRTLEENKKLIK----PDLNTYVFLRAGKDV 181
           NH+   +L+  P NL+ L +    I     PDL + VF+RA KD 
Sbjct: 137 NHYLSSFLSSFPANLQNLNDAAAGISMIETPDLESAVFIRALKDT 181

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901)

>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 OS=Dictyostelium discoideum GN=gins4 PE=3 SV=2

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 104/205 (50%), Gaps = 22/205 (10%)

Query: 30  VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIR-------IEIH 82
           +L+ +K AW NEK +P +L     Y D +++++ +  E  E L    I          I+
Sbjct: 19  LLDKLKKAWINEKYAPNLL----NYEDVIIKEVMEKIEEKESLCASAISNINLQFTANIY 74

Query: 83  RMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMY--LSHDELKYAKSYLKSI 140
            MEIER++++I  YL  RI+KI+KF   I+ +  E    + Y  LS  E+ Y + Y   +
Sbjct: 75  EMEIERLKYIIKCYLVQRIKKIDKFYSSILLE-IENDEYDSYKLLSEFEINYCQKYKALM 133

Query: 141 DNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVL 199
           D +F +  LN +P + + ++ N  + +P LNT+VF +  +D+ +  + D + +       
Sbjct: 134 DGYFKNTLLNSIPKDFQKMDSN-SINRPFLNTFVFCKPREDLGDFLVDDETID------F 186

Query: 200 DEGSQHILPYESIAEFVKNNDVQLL 224
            + S + L Y  I   V+   + L+
Sbjct: 187 KKTSIYFLKYLPIKSLVEGGKMDLI 211

The GINS complex plays an essential role in the initiation of DNA replication.

Dictyostelium discoideum (taxid: 44689)

>sp|Q03406|SLD5_YEAST DNA replication complex GINS protein SLD5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SLD5 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 115/248 (46%), Gaps = 55/248 (22%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR----------- 73
           +S Q+    +  +WKNE+ SPE+LP   + +  +L +I    + IE +            
Sbjct: 54  VSPQQDFSDLMKSWKNERCSPELLPYPHQLMKRLLNRISMQSQLIENISMGFLDMQNASN 113

Query: 74  -------KDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS---SDNM 123
                  +  + +     E+ER++FVI SY+R R+ KI+KF+L + Q + + +   S   
Sbjct: 114 ANPPMPNESKLPLLCMETELERLKFVIRSYIRCRLSKIDKFSLYLRQLNEDENSLISLTD 173

Query: 124 YLSHDELKYAKS----YLKSIDNHFDKYLNMLPPNLRTLEENKKLI----KPDLNTYVFL 175
            LS DE+KY  +    +LK +++   KY   +P  L+ + + +  +    +PD N +VF+
Sbjct: 174 LLSKDEIKYHDTHSLIWLKLVNDSILKY---MPEELQAINDTEGSVNMIDEPDWNKFVFI 230

Query: 176 RA-------------------GKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFV 216
                                GK    V I D+ E    E  L  GS +++ YE I + +
Sbjct: 231 HVNGPPDGKWNEDPLLQENEFGKPCYTVTIPDLKE----EVELTIGSIYVMRYEVIRDLL 286

Query: 217 KNNDVQLL 224
           +++ V L+
Sbjct: 287 RDDKVALI 294

Required for DNA replication. Functions as part of the GINS complex which plays an essential role in the initiation of DNA replication by binding to DNA replication origins and facilitating the assembly of the DNA replication machinery.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6CE80|SLD5_YARLI DNA replication complex GINS protein SLD5 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SLD5 PE=3 SV=1

 Score = 63.9 bits (154), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 103/199 (51%), Gaps = 25/199 (12%)

Query: 37  AWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKD-----DIRIE--IHRMEIERI 89
           +W  E++SP +LP K   +  +L++++   E IE+   D     D+++E  I   E+ERI
Sbjct: 70  SWVTERMSPTLLPTKEALLFRILKRVQLQIEVIEEKSIDMSPDTDVKLELLIVETELERI 129

Query: 90  RFVITSYLRVRIEKIEKFTLDIVQQDFERSS--DNMYLSHDELKYAKSYLKSIDNHF-DK 146
           +++I SYLRVR+ KI+         ++ +SS  D M +S  E  Y   +   + N +  +
Sbjct: 130 KYLIRSYLRVRLLKIDN------SMEYYQSSPLDRMNMSQTERMYLNRHYALLKNLYAHQ 183

Query: 147 YLNMLPPNLRTLEENKK----LIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEG 202
           ++N  P +L+ + ++      + +P+++  VF+R  KD     I        D   L +G
Sbjct: 184 FMNTFPDSLKQMNDSSGSASMVQEPNMDHPVFVRVVKDTGRKIII-----GNDSVKLRKG 238

Query: 203 SQHILPYESIAEFVKNNDV 221
           S  ++ Y  I ++V++ DV
Sbjct: 239 SIVVIKYSIIVKYVESGDV 257

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q4IQM6|SLD5_GIBZE DNA replication complex GINS protein SLD5 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SLD5 PE=3 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 96/207 (46%), Gaps = 22/207 (10%)

Query: 31  LETIKTAWKNEKLSPEIL--PNKVEY------IDCMLEQIKQMEENIEKLRKDDIRIEIH 82
           L+ +   W  E+ +PE+L  P    +      I   +E+++ M  +++   K +  + + 
Sbjct: 24  LQALTRLWVAERSAPELLEWPTDGLFERVNARIKTQIEKVEDMTGDMDP--KTNFALIVI 81

Query: 83  RMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDN 142
           + E+ER +F++ S+LR R+ KI+K TL  +     R      LS  EL YA  +   + N
Sbjct: 82  QTELERYKFLMRSFLRARLAKIDKHTLHYLSSQELRDR----LSPTELSYATKHQALLHN 137

Query: 143 HF-DKYLNMLPPNLRTLEENKKLI----KPDLNTYVFLRAGKDVANVYIRDMSENKEDEF 197
           H+   +L   P  L+ L +    I     PDL+T VF+R  +D  +VY +    + +   
Sbjct: 138 HYLSSFLASFPQQLQNLNDTAGNISMIDSPDLDTAVFIRMLRD-KDVYGK--GTDADITL 194

Query: 198 VLDEGSQHILPYESIAEFVKNNDVQLL 224
               G   I+ + S    V   D +L+
Sbjct: 195 PATNGDVLIIRWSSAKHMVDVGDAELV 221

The GINS complex plays an essential role in the initiation of DNA replication. Has a role in chromosome segregation.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
350535995	219	uncharacterized protein LOC100160910 [Ac	0.892	0.913	0.5	1e-54
307195367	218	DNA replication complex GINS protein SLD	0.937	0.963	0.442	6e-47
332022232	217	DNA replication complex GINS protein SLD	0.879	0.907	0.462	2e-46
383860969	218	PREDICTED: DNA replication complex GINS	0.906	0.931	0.436	3e-46
380016349	217	PREDICTED: DNA replication complex GINS	0.910	0.940	0.437	8e-46
322790095	215	hypothetical protein SINV_11645 [Solenop	0.875	0.911	0.437	8e-46
350403915	218	PREDICTED: DNA replication complex GINS	0.910	0.935	0.432	2e-44
307178339	217	DNA replication complex GINS protein SLD	0.879	0.907	0.445	5e-44
156554799	237	PREDICTED: DNA replication complex GINS	0.892	0.843	0.395	2e-39
395857489	223	PREDICTED: DNA replication complex GINS	0.964	0.968	0.374	9e-39

>gi|350535995|ref|NP_001233033.1| uncharacterized protein LOC100160910 [Acyrthosiphon pisum] gi|239788744|dbj|BAH71038.1| ACYPI004660 [Acyrthosiphon pisum]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 100/200 (50%), Positives = 151/200 (75%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
           ++ QKVL+ ++ AW NEK SPEILP++ +Y+DC+LEQIK ME N+ KL K D ++++H++
Sbjct: 20  MTAQKVLQIVERAWLNEKFSPEILPHQTDYVDCLLEQIKGMEGNLAKLSKTDPKVDLHKL 79

Query: 85  EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHF 144
           E+ERI+FVITSYLR R++KIE F + +++++  RS ++ YLS  ELK+AK +  + DNHF
Sbjct: 80  ELERIKFVITSYLRTRLKKIESFCVRVLEEEATRSEEDAYLSPAELKFAKEFALNADNHF 139

Query: 145 DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQ 204
           D  L  +P     L+ NKK+I+P+LN++VFL+  K + +V I++  E +E+E VL++GSQ
Sbjct: 140 DTILRHMPHLYNKLDRNKKIIEPNLNSFVFLKCNKHIDSVIIKNTLEGQEEEIVLEDGSQ 199

Query: 205 HILPYESIAEFVKNNDVQLL 224
           H++PY SIAEFVK   VQL+
Sbjct: 200 HLMPYSSIAEFVKKGTVQLI 219

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195367|gb|EFN77285.1| DNA replication complex GINS protein SLD5 [Harpegnathos saltator]

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 97/219 (44%), Positives = 145/219 (66%), Gaps = 9/219 (4%)

Query: 7   SLFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQME 66
           SL D +E     ++D   L+ Q  L+ I+ AW NEK +PEILP++   +DCML+QI  ME
Sbjct: 8   SLVDEVE-----DDDVGELTAQDALQAIENAWMNEKFAPEILPHQSNLVDCMLQQIAHME 62

Query: 67  ENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLS 126
            NI++L + D+R+ +HRME+ERIR++I+SYLR R+EKIE++TL I+ ++  RS D  YL+
Sbjct: 63  RNIKRLDRSDLRMLVHRMEVERIRYMISSYLRTRLEKIERYTLHILSEEASRSEDECYLT 122

Query: 127 HDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVY 185
             EL++AK +L  ++  F    L  +PPN +  E NK  +KP++  YVFLRA + V  V 
Sbjct: 123 PGELRFAKEFLAGMETLFKTVALQHMPPNFQRFEVNKFTVKPNMQAYVFLRANQRVTGVV 182

Query: 186 IRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224
           +   + N+E +F  D GSQHI+ Y ++A  VK+  VQL+
Sbjct: 183 LHG-ALNEEIDF--DAGSQHIVQYSAVAHLVKSGVVQLI 218

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022232|gb|EGI62547.1| DNA replication complex GINS protein SLD5 [Acromyrmex echinatior]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/201 (46%), Positives = 141/201 (70%), Gaps = 4/201 (1%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
           L+ Q VL+ I+ AW NE+ +PEILP++ + +DCML+QI  MEENI++L K+D+R  +HRM
Sbjct: 20  LTAQTVLQEIENAWMNERFAPEILPHQSDLVDCMLQQIAHMEENIKRLDKNDLRALVHRM 79

Query: 85  EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHF 144
           E++RI++VI+SYLR R+EKIE++T+ I+ ++  RS +  YL+  EL++AK YL +++  F
Sbjct: 80  ELDRIKYVISSYLRTRLEKIERYTIHILSEEANRSPEEAYLTPGELRFAKEYLANLETFF 139

Query: 145 DKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGS 203
               L  +PPN +  E NK  IKP+L  +VFLR  + V  V +  M  N+E +F  +EGS
Sbjct: 140 KTVALQHMPPNFQRFEANKFTIKPNLQAHVFLRTNQRVTGVVLPGML-NEEIDF--EEGS 196

Query: 204 QHILPYESIAEFVKNNDVQLL 224
           QHI+ Y ++A  VK+  VQL+
Sbjct: 197 QHIIQYSAVANLVKSGVVQLI 217

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860969|ref|XP_003705959.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Megachile rotundata]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 92/211 (43%), Positives = 145/211 (68%), Gaps = 8/211 (3%)

Query: 15  EPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK 74
           EP   E     + Q VL  I+ AW NEK +PEILP++ + +DCML+QI  ME+N+++L K
Sbjct: 15  EPEGQE----FTAQGVLLAIEEAWLNEKFAPEILPHQSDLVDCMLQQITHMEQNMKRLEK 70

Query: 75  DDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAK 134
            D+R+ IH ME++RIRF+I+SYLR+R+EKIEK+ + I+ Q+  RS +  YL+  EL++AK
Sbjct: 71  GDLRLLIHMMELDRIRFLISSYLRIRLEKIEKYAIHILSQEANRSLEECYLTSAELQFAK 130

Query: 135 SYLKSIDNHFDK-YLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENK 193
            +L SI+  F    LN +P N +T E+++ ++KP++  YVFLRA   ++ V +     + 
Sbjct: 131 DFLASIETLFKATALNYMPGNFQTFEKDQLIVKPNMQAYVFLRANDRISGVVLPG---SL 187

Query: 194 EDEFVLDEGSQHILPYESIAEFVKNNDVQLL 224
           ++E   + GSQHI+PY+++A+ VK+  VQL+
Sbjct: 188 DEEIDFEPGSQHIVPYKAVADLVKSGAVQLI 218

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016349|ref|XP_003692149.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Apis florea]

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/208 (43%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 18  ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDI 77
           ++++E  L+ Q VL  I+ AW NEK +PEILP++ + +DCML+QI  MEEN+++L K D+
Sbjct: 13  SDQEEEELTAQSVLLAIEEAWLNEKFAPEILPHRSDLVDCMLQQITHMEENMKRLDKGDL 72

Query: 78  RIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYL 137
           R+ IHRME++RIRF+I+SYLR R+EKIEK+T+ I+ ++  RSS+  YL+  EL++AK +L
Sbjct: 73  RLMIHRMELDRIRFLISSYLRARLEKIEKYTIHILSEEANRSSEECYLTVAELQFAKEFL 132

Query: 138 KSIDNHFDK-YLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDE 196
            +++  F    L  +P N +T E NK  +KP++  YVFLRA   +  + +     + ++E
Sbjct: 133 ANMETLFRTIALQHMPGNFQTFEVNKLTVKPNMKAYVFLRANNRINGIILPG---SMDEE 189

Query: 197 FVLDEGSQHILPYESIAEFVKNNDVQLL 224
              + GSQHI+ Y ++++ VKN  VQL+
Sbjct: 190 IDFESGSQHIIQYNAVSDLVKNGSVQLI 217

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322790095|gb|EFZ15131.1| hypothetical protein SINV_11645 [Solenopsis invicta]

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 88/201 (43%), Positives = 137/201 (68%), Gaps = 5/201 (2%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
           ++ Q VL+ I+ AW NE+ +PEILP++ + +DCML+QI  MEENI++L + D+R  +HRM
Sbjct: 19  VTAQTVLQEIENAWMNERCAPEILPHQSDLVDCMLQQIAHMEENIKRLDRSDLRALVHRM 78

Query: 85  EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHF 144
           E++RIR+VI+SYLR R+EKIE++T  I+ ++  RS +  YL+  EL++AK Y  S++  F
Sbjct: 79  ELDRIRYVISSYLRARLEKIERYTFHILSEESNRSPEEAYLTPGELRFAKEYGDSLEALF 138

Query: 145 DKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGS 203
               L+ +PPN R  E NK  ++P+L T+VFLRA + +  + +        DE   +EGS
Sbjct: 139 KTVALDHMPPNFRGFERNKLTVRPNLQTHVFLRANQSITGIVL----PGTNDEVDFEEGS 194

Query: 204 QHILPYESIAEFVKNNDVQLL 224
           QHI+ Y +++  VK+  VQL+
Sbjct: 195 QHIIQYSAVSNLVKSGVVQLI 215

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403915|ref|XP_003486949.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Bombus impatiens]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 90/208 (43%), Positives = 144/208 (69%), Gaps = 4/208 (1%)

Query: 18  ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDI 77
           ++++E  L+ Q VL  I+ AW NEK +PEILP++ + I+CML+QI  MEEN+++L K D+
Sbjct: 14  SDQEEEELTAQSVLLAIEEAWLNEKFAPEILPHRSDLIECMLQQITHMEENMKRLDKGDL 73

Query: 78  RIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYL 137
           R+ IHRME++RI+++I++YLR R+EKIEK+T+ I+ Q+  RSS++ YLS  EL++AK +L
Sbjct: 74  RLMIHRMELDRIKYMISNYLRARLEKIEKYTIHILSQEANRSSEDCYLSVAELQFAKEFL 133

Query: 138 KSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDE 196
            SI+  F    L  +P N +T E +   +KP++  YVFLRA   +  +    +  + ++E
Sbjct: 134 ASIETLFKTVALQHMPGNFQTFEVDTLAVKPNMQAYVFLRANDRINGIL---LPGSMDEE 190

Query: 197 FVLDEGSQHILPYESIAEFVKNNDVQLL 224
             L+ GSQHI+ Y ++A+ VK   V+L+
Sbjct: 191 IDLEPGSQHIIQYSAVADLVKTGAVKLI 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307178339|gb|EFN67093.1| DNA replication complex GINS protein SLD5 [Camponotus floridanus]

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 141/202 (69%), Gaps = 5/202 (2%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
           L+ Q  L+ I+ AW NE  +PEILP++ + +DCML+QI  MEEN+++L K+D+R  +HRM
Sbjct: 19  LTAQTALQEIENAWMNETFAPEILPHQSDLVDCMLQQIAHMEENVKRLDKNDLRALVHRM 78

Query: 85  EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSD-NMYLSHDELKYAKSYLKSIDNH 143
           E++RIR+VI+SYLR R+EKIE++T+ I+ ++  R+ D   YL+ DEL++AK YL +++  
Sbjct: 79  ELDRIRYVISSYLRTRLEKIERYTIHILSEEENRNPDEEPYLTPDELRFAKEYLANLETL 138

Query: 144 FDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEG 202
           F    L  +PPN +  E NK  +KP++  +VFLRA + +  V +   + N+E +F  +EG
Sbjct: 139 FKTVALQHMPPNFQQFEVNKFTVKPNVQAHVFLRANQRITGVVVPG-TLNEEIDF--EEG 195

Query: 203 SQHILPYESIAEFVKNNDVQLL 224
           SQHI+ Y ++A  VK+  VQL+
Sbjct: 196 SQHIIQYSAVAHLVKSGAVQLI 217

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156554799|ref|XP_001606084.1| PREDICTED: DNA replication complex GINS protein SLD5-like [Nasonia vitripennis]

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/205 (39%), Positives = 132/205 (64%), Gaps = 5/205 (2%)

Query: 21  DENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIE 80
           D+  ++  + ++ ++ AW NEK +PE+LP+++  ++ MLE I  ME N++KL+K DIR+ 
Sbjct: 37  DDEEMTAAQAIQALENAWLNEKFAPELLPHQLPLVETMLEHIVHMENNLKKLKKGDIRLN 96

Query: 81  IHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSI 140
           IH ME+ RIRFVI+SYLR R+EKIE++ + ++ +D +R  +  +++  E K+A+ Y+ S+
Sbjct: 97  IHTMELSRIRFVISSYLRKRLEKIEEYAIHLLSEDAKRDVNEHFMTTAEAKFAREYISSV 156

Query: 141 DNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVL 199
           +N F    L  +PP ++  E NK   KP++N +VF+ A K    + I       + E   
Sbjct: 157 ENLFTAVALQYIPPRIKEFELNKMASKPNMNKHVFVSANKAALGILI----PGNDIEVDF 212

Query: 200 DEGSQHILPYESIAEFVKNNDVQLL 224
           +EGSQHI+ Y +IA  VK  DVQL+
Sbjct: 213 EEGSQHIIQYSAIAHLVKTGDVQLI 237

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|395857489|ref|XP_003801124.1| PREDICTED: DNA replication complex GINS protein SLD5 [Otolemur garnettii]

 Score =  166 bits (419), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 82/219 (37%), Positives = 147/219 (67%), Gaps = 3/219 (1%)

Query: 9   FDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEEN 68
            D++  +     +E  L+  +++E ++ AW NEK +PE+L +K E +DC++EQ++ MEEN
Sbjct: 5   LDLLGQDSDGGSEEVVLTPAELVERLEQAWMNEKFAPELLESKPEIVDCVVEQLEHMEEN 64

Query: 69  IEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSH 127
           + +++K+D+++ IHRME+ER+R+V++SYLR R+ KIEKF   +++++  RS  +   LS 
Sbjct: 65  LRRVKKEDLKVSIHRMELERLRYVLSSYLRCRLAKIEKFFPHVLEKEKTRSEGEPSSLSP 124

Query: 128 DELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYI 186
           +E  +AK Y+ + +++  +  L  +PPNL+ ++  K + KPDL++YVFLR  +   N+ +
Sbjct: 125 EEFAFAKEYMANTESYLRNVALKHMPPNLQKVDLLKAVPKPDLDSYVFLRVRERQENILV 184

Query: 187 RDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
              S+ + D  + L+EGSQH++ Y +IA  V +  VQL+
Sbjct: 185 EPESDEQRDYVIDLEEGSQHLIRYRTIAPLVASGAVQLI 223

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	224
FB|FBgn0039403	228	Sld5 "Sld5" [Drosophila melano	0.915	0.899	0.350	4.1e-33
UNIPROTKB|A2VE40	223	GINS4 "DNA replication complex	0.959	0.964	0.325	6.7e-33
RGD|1307397	223	Gins4 "GINS complex subunit 4	0.910	0.914	0.347	8.5e-33
UNIPROTKB|Q499W2	223	Gins4 "DNA replication complex	0.910	0.914	0.347	8.5e-33
UNIPROTKB|F1SE31	223	GINS4 "Uncharacterized protein	0.959	0.964	0.325	1.1e-32
MGI|MGI:1923847	223	Gins4 "GINS complex subunit 4	0.968	0.973	0.331	1.1e-32
UNIPROTKB|F6X4M2	223	GINS4 "Uncharacterized protein	0.924	0.928	0.342	2.3e-32
ZFIN|ZDB-GENE-040801-59	224	zgc:100817 "zgc:100817" [Danio	0.910	0.910	0.341	6e-32
UNIPROTKB|E2R2C7	224	GINS4 "Uncharacterized protein	0.924	0.924	0.341	7.7e-32
UNIPROTKB|Q9BRT9	223	GINS4 "DNA replication complex	0.959	0.964	0.307	3.3e-31

FB|FBgn0039403 Sld5 "Sld5" [Drosophila melanogaster (taxid:7227)]

 Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
 Identities = 74/211 (35%), Positives = 124/211 (58%)

Query:    15 EPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK 74
             E   ++D   ++ QKVLE I+TAW NE  +PEILP++ + ++ M+ Q+  MEE +  L K
Sbjct:    23 EDEDDDDMEQITAQKVLEIIETAWINEMCAPEILPSQTDMLELMVSQVAHMEEQMRDLDK 82

Query:    75 DDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAK 134
             +D              +++ SYLR R++KIE FT  I+ Q+  R  D+  LS +E K+A+
Sbjct:    83 NDFRAVVHSMELERVRYIMASYLRCRLQKIETFTQHILNQEESREPDDKRLSPEETKFAQ 142

Query:   135 SYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKE 194
              +  ++D +F K      PN +  E  ++++ P+L ++VFL+A     NV +  +    +
Sbjct:   143 EFASNVDEYFHKVATQYMPNQQRGEAEQRIVTPNLMSHVFLKA-----NVAVPAVIVGVD 197

Query:   195 DEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             DE V +  GSQHI+PY+ +A+ ++NN  QL+
Sbjct:   198 DEEVDMAAGSQHIIPYQLVADLIQNNQAQLI 228

GO:0043138 "3'-5' DNA helicase activity" evidence=IDA

GO:0045750 "positive regulation of S phase of mitotic cell cycle" evidence=IMP

GO:0000811 "GINS complex" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|A2VE40 GINS4 "DNA replication complex GINS protein SLD5" [Bos taurus (taxid:9913)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 71/218 (32%), Positives = 131/218 (60%)

Query:    10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
             D++  +   + +E  L+  ++++ ++ AW NEK +PE+L NK E ++C++EQ++ MEEN+
Sbjct:     6 DLLGQDSDGDSEEVILTPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLEHMEENL 65

Query:    70 EKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQD-FERSSDNMYLSHD 128
             ++ +K D              FV++SYLR R+ KIEKF    ++++   R  +   LS +
Sbjct:    66 KRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHTLEKEKTRREEEPPILSPE 125

Query:   129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
             EL +AK +L + + +  D  L  +PPNL+ ++  + + KPDL+ YVFLR  +   N+ + 
Sbjct:   126 ELVFAKEFLANTETYLKDTALKHMPPNLQKVDLLRTVPKPDLDAYVFLRVKERQENILVE 185

Query:   188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
               ++ + D  + L+EGSQH++ Y ++A  V +  +QL+
Sbjct:   186 PENDEQRDYVIDLEEGSQHLMRYRTVAPLVASGAIQLI 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

RGD|1307397 Gins4 "GINS complex subunit 4 (Sld5 homolog)" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 72/207 (34%), Positives = 127/207 (61%)

Query:    21 DENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDXXXX 80
             +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D    
Sbjct:    17 EEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGDLKVS 76

Query:    81 XXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHDELKYAKSYLKS 139
                       +V++SYLR R+ KIEKF   I++++  R + +   LS +E  +AK Y+  
Sbjct:    77 IHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYMDH 136

Query:   140 IDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFV 198
              + HF    L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D  +
Sbjct:   137 TETHFKNVALKHMPPNLQKVDLMRAVPKPDLDSYVFLRVKERQENILVEPEADEQRDYVI 196

Query:   199 -LDEGSQHILPYESIAEFVKNNDVQLL 224
              L+EGSQH++ Y++IA  V +  VQL+
Sbjct:   197 DLEEGSQHLIRYKTIAPLVASGAVQLI 223

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|Q499W2 Gins4 "DNA replication complex GINS protein SLD5" [Rattus norvegicus (taxid:10116)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 72/207 (34%), Positives = 127/207 (61%)

Query:    21 DENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDXXXX 80
             +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +K D    
Sbjct:    17 EEVVLTPAELIERLEQAWMNEKFAPELLESKSEIVECVMEQLEHMEENLRRAKKGDLKVS 76

Query:    81 XXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHDELKYAKSYLKS 139
                       +V++SYLR R+ KIEKF   I++++  R + +   LS +E  +AK Y+  
Sbjct:    77 IHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTRPAGEPSSLSPEEFVFAKEYMDH 136

Query:   140 IDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFV 198
              + HF    L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D  +
Sbjct:   137 TETHFKNVALKHMPPNLQKVDLMRAVPKPDLDSYVFLRVKERQENILVEPEADEQRDYVI 196

Query:   199 -LDEGSQHILPYESIAEFVKNNDVQLL 224
              L+EGSQH++ Y++IA  V +  VQL+
Sbjct:   197 DLEEGSQHLIRYKTIAPLVASGAVQLI 223

GO:0006260 "DNA replication" evidence=IEA

UNIPROTKB|F1SE31 GINS4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 71/218 (32%), Positives = 131/218 (60%)

Query:    10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
             D++  +   + +E  L+  ++++ ++ AW NEK +PE+L NK E ++C++EQ+  MEEN+
Sbjct:     6 DLLGQDSDGDSEEVVLTPAELIDRLEQAWMNEKFAPELLENKSEIVECVMEQLDHMEENL 65

Query:    70 EKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHD 128
              + +K D              FV++SYLR R+ KIEKF   +++++  R   +   LS +
Sbjct:    66 RRAKKGDLKVSIHQMEMERIRFVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125

Query:   129 ELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
             E  +A+ Y+ + +N+     L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ + 
Sbjct:   126 EFAFAQEYMVNTENYLKNVALKHMPPNLQKVDLLRAVPKPDLDSYVFLRVKERQENILVE 185

Query:   188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
               ++ + D  + L+EGSQH++ Y++IA  V +  VQL+
Sbjct:   186 PETDEQRDYVIDLEEGSQHLIRYKTIAPLVASGAVQLI 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923847 Gins4 "GINS complex subunit 4 (Sld5 homolog)" [Mus musculus (taxid:10090)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 73/220 (33%), Positives = 130/220 (59%)

Query:     8 LFDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEE 67
             + D+   +     +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEE
Sbjct:     4 VLDLHGQDSDGGSEEMVLTPAELIEKLEQAWMNEKFAPELLESKAEIVECVMEQLEHMEE 63

Query:    68 NIEKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERSS-DNMYLS 126
             N+ + +K D              +V++SYLR R+ KIEKF   I++++  RS  +   LS
Sbjct:    64 NLRRAKKGDLKVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKVRSEGEPSSLS 123

Query:   127 HDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVY 185
              +E  +AK Y+   + HF    L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ 
Sbjct:   124 PEEFVFAKEYMDHTETHFKNVALKHMPPNLQKVDLLRAVPKPDLDSYVFLRVKERQENIL 183

Query:   186 IRDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             +   ++ + D  + L+ GSQH++ Y++IA  V +  VQL+
Sbjct:   184 VEPEADEQRDYVIDLEVGSQHLIRYKTIAPLVASGAVQLI 223

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006260 "DNA replication" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F6X4M2 GINS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 72/210 (34%), Positives = 128/210 (60%)

Query:    18 ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDX 77
             A+ +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ+  MEEN+ + +K D 
Sbjct:    14 ADSEEVVLTPAELIEKLEQAWMNEKFAPELLESKSEIVECVMEQLDHMEENLRRAKKGDL 73

Query:    78 XXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQD-FERSSDNMYLSHDELKYAKSY 136
                          +V++SYLR R+ KIEKF   I++++   R  +   LS +EL +AK Y
Sbjct:    74 KVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTPREGELSSLSPEELIFAKQY 133

Query:   137 LKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKED 195
             + + + +     L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D
Sbjct:   134 MANTETYLKNVALKHMPPNLQVVDLLRSVPKPDLDSYVFLRVKERQENILVEPETDEQRD 193

Query:   196 EFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
               + L+EGSQH++ Y++IA  V +  VQL+
Sbjct:   194 YVIDLEEGSQHLIRYKTIAPLVASGAVQLI 223

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040801-59 zgc:100817 "zgc:100817" [Danio rerio (taxid:7955)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/208 (34%), Positives = 128/208 (61%)

Query:    21 DENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDXXXX 80
             +E  ++  +++  ++ AW NEK SPE+L NK E ++C++EQ+  MEEN++++RK D    
Sbjct:    17 EEELMTPAELISRLEEAWLNEKFSPELLENKSELVECVMEQLTHMEENLQRVRKGDLKAS 76

Query:    81 XXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERSS-DNMYLSHDELKYAKSYLKS 139
                       FV++S+LR R++KIEKF   +++++  R+  D  +LS +E  +AK YL +
Sbjct:    77 VHRMEIDRIRFVLSSFLRSRLKKIEKFFPHVLEKEKSRADGDPSFLSPEEFAFAKEYLAN 136

Query:   140 IDNHFDKY-LNMLPPNLRTLEENKKLI-KPDLNTYVFLRAGKDVANVYIRDMSENKEDEF 197
              + +     L  +PPNL++++  K  + +P L+++VFLR  +   N+ +   ++ + +  
Sbjct:   137 TEVYLRAVALKHMPPNLQSVDMMKAAVPEPCLDSFVFLRVKEKQENILVEPETDEQREYV 196

Query:   198 V-LDEGSQHILPYESIAEFVKNNDVQLL 224
             V LDEGSQH++ Y +IA  V +  VQL+
Sbjct:   197 VDLDEGSQHLMRYRTIAPLVASGAVQLI 224

GO:0003674 "molecular_function" evidence=ND

GO:0006260 "DNA replication" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E2R2C7 GINS4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/211 (34%), Positives = 128/211 (60%)

Query:    18 ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDX 77
             A+ +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ+  MEEN+ + +K D 
Sbjct:    14 ADSEEVVLTPAELIEKLEQAWMNEKFAPELLESKSEIVECVMEQLDHMEENLRRAKKGDL 73

Query:    78 XXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQD-FERSSDNMYLSHDELKYAKSY 136
                          +V++SYLR R+ KIEKF   I++++   R  +   LS +EL +AK Y
Sbjct:    74 KVSIHRMEMERIRYVLSSYLRCRLMKIEKFFPHILEKEKTPREGELSSLSPEELIFAKQY 133

Query:   137 LKSIDNHFDKY-LNMLPPNLRTLEENKKLI-KPDLNTYVFLRAGKDVANVYIRDMSENKE 194
             + + + +     L  +PPNL+ ++  +  + KPDL++YVFLR  +   N+ +   ++ + 
Sbjct:   134 MANTETYLKNVALKHMPPNLQVVDLLRSAVPKPDLDSYVFLRVKERQENILVEPETDEQR 193

Query:   195 DEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             D  + L+EGSQH++ Y++IA  V +  VQL+
Sbjct:   194 DYVIDLEEGSQHLIRYKTIAPLVASGAVQLI 224

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9BRT9 GINS4 "DNA replication complex GINS protein SLD5" [Homo sapiens (taxid:9606)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 67/218 (30%), Positives = 132/218 (60%)

Query:    10 DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
             D +  +     +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct:     6 DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65

Query:    70 EKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHD 128
              + +++D              +V++SYLR R+ KIEKF   +++++  R   +   LS +
Sbjct:    66 RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125

Query:   129 ELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
             EL +A+ ++ + +++     L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ + 
Sbjct:   126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185

Query:   188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
               ++ + D  + L++GSQH++ Y++IA  V +  VQL+
Sbjct:   186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223

GO:0005737 "cytoplasm" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9P7C8	SLD5_SCHPO	No assigned EC number	0.2731	0.8125	0.8504	yes	N/A
Q99LZ3	SLD5_MOUSE	No assigned EC number	0.3857	0.9241	0.9282	yes	N/A
Q55EA2	SLD5_DICDI	No assigned EC number	0.2829	0.8169	0.8672	yes	N/A
A2VE40	SLD5_BOVIN	No assigned EC number	0.3623	0.9598	0.9641	yes	N/A
Q9BRT9	SLD5_HUMAN	No assigned EC number	0.3440	0.9598	0.9641	yes	N/A
Q499W2	SLD5_RAT	No assigned EC number	0.3875	0.9196	0.9237	yes	N/A
Q4IQM6	SLD5_GIBZE	No assigned EC number	0.2608	0.8258	0.8371	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	224
cd11711	119	cd11711, GINS_A_Sld5, Alpha-helical domain of GINS	2e-38
COG5086	218	COG5086, COG5086, Uncharacterized conserved protei	3e-18
cd11581	103	cd11581, GINS_A, Alpha-helical domain of GINS comp	6e-07

>gnl|CDD|212549 cd11711, GINS_A_Sld5, Alpha-helical domain of GINS complex protein Sld5

 Score =  129 bits (326), Expect = 2e-38
 Identities = 56/120 (46%), Positives = 85/120 (70%), Gaps = 7/120 (5%)

Query: 30  VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR---KDDIRIEIHRMEI 86
            LE +K AW NEK +PE+LP + E ++ +LEQI+Q EEN+E+L+   KDD+R+ +H ME+
Sbjct: 1   DLELLKRAWVNEKFAPELLPYQEELVERVLEQIEQQEENLEELKASEKDDLRLSLHEMEL 60

Query: 87  ERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDK 146
           ERIRF++ SYLR R++KIEK+ L I+ ++   S     LS +EL++AK Y + ++NH   
Sbjct: 61  ERIRFLLRSYLRTRLQKIEKYALHILSEEELPS----RLSPEELEFAKRYAELLENHLKS 116

Sld5 is a component of GINS tetrameric protein complex, and within the complex Sld5 interacts with Psf1 via its N-terminal A-domain, and with Psf2 through a combination of the A and B domains. Sld5 in Drosophila is required for normal cell cycle progression and the maintenance of genomic integrity. GINS is a complex of four subunits (Sld5, Psf1, Psf2 and Psf3) that is involved in both initiation and elongation stages of eukaryotic chromosome replication. Besides being essential for the maintenance of genomic integrity, GINS plays a central role in coordinating DNA replication with cell cycle checkpoints and is involved in cell growth. The eukaryotic GINS subunits are homologous and homologs are also found in the archaea; the complex is not found in bacteria. The four subunits of the complex consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 119

>gnl|CDD|227418 COG5086, COG5086, Uncharacterized conserved protein [Function unknown]

 Score = 79.6 bits (196), Expect = 3e-18
 Identities = 54/208 (25%), Positives = 97/208 (46%), Gaps = 17/208 (8%)

Query: 26  SVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE----KLRKDDIRIEI 81
                L  +  AW+NE+ +P +LP  +  ID  L++I +  E+++    K    +    +
Sbjct: 19  MSFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESIL 78

Query: 82  HRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKY-AKSYLKSI 140
              E+ER++FV+ SY+R R++KI+K     +  +    +  + LS  EL Y  K  L  I
Sbjct: 79  METELERVKFVVRSYIRTRLKKIDKNLYYDLSDE----NSLILLSGGELAYYEKHSLIYI 134

Query: 141 DNHFDKYLNMLPPNLRTLEENKKLI----KPDLNTYVFLRAGKDVANVYIRDMSENKEDE 196
           D   D  L + P     + +         +PD N +VF    +D+       + E +  E
Sbjct: 135 DLLKDSDLYVTPQKFHKVHDFVGFYCMTDEPDWNKFVFGAVNEDLQEND--TVGEKELLE 192

Query: 197 FVLDEGSQHILPYESIAEFVKNNDVQLL 224
             L +G   +  Y+ I +F++ N+V L+
Sbjct: 193 --LFKGDFFVARYDVIMDFLRRNEVILI 218

Length = 218

>gnl|CDD|212547 cd11581, GINS_A, Alpha-helical domain of GINS complex proteins; Sld5, Psf1, Psf2 and Psf3

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 22/106 (20%), Positives = 53/106 (50%), Gaps = 9/106 (8%)

Query: 37  AWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSY 96
           A  NE+ S  +LP   ++++ + E + ++ +      ++ +   +  +E+  IR ++ +Y
Sbjct: 7   AIHNERKSENLLPPPPDFMEEVKELLHRLSKRQRSETQEILEHRLKILELSYIRDLLKTY 66

Query: 97  LRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDN 142
           L  R++KI   +      +F  S+    L+ +E+ Y ++Y K +  
Sbjct: 67  LNSRLDKIRDLS-----PEFLPSN----LTEEEIGYFQTYWKEVAE 103

The GINS complex is involved in both initiation and elongation stages of eukaryotic chromosome replication, with GINS being the component that most likely serves as the replicative helicase that unwinds duplex DNA ahead of the moving replication fork. In eukaryotes, GINS is a tetrameric arrangement of four subunits Sld5, Psf1, Psf2 and Psf3. The GINS complex has been found in eukaryotes and archaea, but not in bacteria. The four subunits of the complex are homologous and consist of two domains each, termed the alpha-helical (A) and beta-strand (B) domains. The A and B domains of Sld5/Psf1 are permuted with respect to Psf1/Psf3. Length = 103

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	224
KOG3176|consensus	223		100.0
COG5086	218	Uncharacterized conserved protein [Function unknow	100.0
KOG3303|consensus	192		99.96
COG5230	194	Uncharacterized conserved protein [Function unknow	99.9
PF05916	108	Sld5: GINS complex protein; InterPro: IPR021151 DN	97.82
COG1711	223	DNA replication initiation complex subunit, GINS f	96.33

>KOG3176|consensus

Probab=100.00  E-value=4.1e-55  Score=365.63  Aligned_cols=197  Identities=39%  Similarity=0.706  Sum_probs=182.5

Q ss_pred             cccCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466          23 NCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI-EKLRKDDIRIEIHRMEIERIRFVITSYLRVRI  101 (224)
Q Consensus        23 e~~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i-~~~~~~~~~~~l~~~eleRikyll~sYlR~RL  101 (224)
                      +++||+++++.|+++|+||||||+||||+.++|+++++||+.|++++ ....+.++++++|+|||||+||+++||+||||
T Consensus        20 ~~~t~~~~le~L~~aW~NEk~APeLLp~~~elve~~ldqIe~~eE~i~~~a~~~dlr~~~~qmELERvkfvlrSYlRcRL   99 (223)
T KOG3176|consen   20 ETLTPEEDLEDLETAWQNEKCAPELLPYALELVERLLDQIEHMEETIERKASNKDLRVSLHQMELERVKFVLRSYLRCRL   99 (223)
T ss_pred             eecCcHHHHHHHHHHHhhhccChhhcCChHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999 55666789999999999999999999999999


Q ss_pred             HHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCcccccccc----ccCccCCCCCCeEEEE
Q psy2466         102 EKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEE----NKKLIKPDLNTYVFLR  176 (224)
Q Consensus       102 ~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~----~~~i~~P~~d~~Vfvr  176 (224)
                      +|||+|+.|++..++.|.+..++||+.|++||.+|+..+++||..+ |+.||+++|..++    ..||.+|+++++||++
T Consensus       100 ~KIekf~~~~ln~ee~re~~~~~LS~~E~kfa~~~a~~~~k~~~~~~l~~mp~~~~~~~dkv~~~~~v~~p~~~s~Vf~~  179 (223)
T KOG3176|consen  100 QKIEKFLQHILNQEELREGALSLLSEEELKFAEEYADILKKHFVDVVLQKMPENLQENDDKVGFVCMVDKPDLDSRVFIK  179 (223)
T ss_pred             HHHHhhhHHhhcchhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhhhceeEEEecCCCceeEEEE
Confidence            9999999999999888877789999999999999999999999999 9999998887654    4799999999999999


Q ss_pred             ecccCCce-EecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         177 AGKDVANV-YIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       177 v~~d~g~v-~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      |+.+..+. .+++ |+.    ++|.|||+|++||..|.+||+.|.|.||
T Consensus       180 vn~~~~~~~~~~D-~e~----~el~~gs~~viry~~v~dll~~~~V~Li  223 (223)
T KOG3176|consen  180 VNESVEETVAVPD-DEL----LELTKGSQHVIRYEVVSDLLRDGEVQLI  223 (223)
T ss_pred             eccccccceeecC-ccc----ccccccceeeeeHHHHHHHHhcCCeeeC
Confidence            99987654 4555 454    9999999999999999999999999997

>COG5086 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-39  Score=261.82  Aligned_cols=190  Identities=26%  Similarity=0.428  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHh-hccc---chhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466          26 SVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIE-KLRK---DDIRIEIHRMEIERIRFVITSYLRVRI  101 (224)
Q Consensus        26 t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~-~~~~---~~~~~~l~~~eleRikyll~sYlR~RL  101 (224)
                      .|...++.|..+|+|||+||+||||...+|++++++|+.|.+.++ .+.+   +...-.+.++|+||+||+++||+||||
T Consensus        19 ~~~~d~~DL~~~w~NEr~tp~LLPya~~li~r~LdrIs~q~e~v~ia~g~S~a~~~~S~lMetElERvKFvvrsYirtRl   98 (218)
T COG5086          19 MSFPDLNDLILAWQNERSTPRLLPYALHLIDRFLDRISEQTEHVKIALGKSIAKNNESILMETELERVKFVVRSYIRTRL   98 (218)
T ss_pred             CCcCCHHHHHHHHhccccCccccCcHHHHHHHHHHHHHHHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            456689999999999999999999999999999999999998887 3322   222334579999999999999999999


Q ss_pred             HHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCccccccccc----cCccCCCCCCeEEEE
Q psy2466         102 EKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEEN----KKLIKPDLNTYVFLR  176 (224)
Q Consensus       102 ~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~~----~~i~~P~~d~~Vfvr  176 (224)
                      .||.+|+.|+++++...    =.||..|++|..+++....+|++.+ |.-+|..++++++.    .|+.+|++++||||-
T Consensus        99 ~Kidk~~~y~~s~~N~L----ilLS~~E~~y~~~Hs~I~~~l~~ds~l~~~p~k~~kv~d~vG~~~m~dePD~nk~Vf~~  174 (218)
T COG5086          99 KKIDKNLYYDLSDENSL----ILLSGGELAYYEKHSLIYIDLLKDSDLYVTPQKFHKVHDFVGFYCMTDEPDWNKFVFGA  174 (218)
T ss_pred             HHhhhhHHHhhcCCcee----eEecchhHHHHHHhhHHHHHHHHhhHHHHhHHHHHHHHhhccceeeecCCCccceeEEE
Confidence            99999999998865432    4899999999999999999999999 99999999998764    799999999999999


Q ss_pred             ecccCCc-eEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         177 AGKDVAN-VYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       177 v~~d~g~-v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      |++|+.+ ..++. .|    .++|.||++|++||+.|.++++.|.|-||
T Consensus       175 VnEdlqEN~~V~e-kE----~~el~kGd~~v~ry~vI~D~Lr~~~V~Li  218 (218)
T COG5086         175 VNEDLQENDTVGE-KE----LLELFKGDFFVARYDVIMDFLRRNEVILI  218 (218)
T ss_pred             Ecchhhhccccch-hh----eeeeecCcEEEEEHHHHHHHHhcCceeeC
Confidence            9988753 22222 12    49999999999999999999999999987

>KOG3303|consensus

Probab=99.96  E-value=3.2e-28  Score=199.38  Aligned_cols=171  Identities=18%  Similarity=0.280  Sum_probs=139.2

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhc--------ccc---hhHHHHHHHHHHHHHHHHHH
Q psy2466          27 VQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKL--------RKD---DIRIEIHRMEIERIRFVITS   95 (224)
Q Consensus        27 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~--------~~~---~~~~~l~~~eleRikyll~s   95 (224)
                      +.+++.++++.   ...  .|+||++++|+.++++|++...+...+        ++.   +..+.+++..++|+|+|+.|
T Consensus         7 g~~Li~d~kr~---~~~--~Lppyn~d~ir~i~~E~~~l~~~~~~i~~~~~~g~~~d~~~~~~~~m~h~~~~RNkRClmA   81 (192)
T KOG3303|consen    7 GLQLILDLKRT---PLG--QLPPYNEDLIRQILEEIDALDARNESIKQKAQSGGSDDNLLPVNYLMMHLSLERNKRCLMA   81 (192)
T ss_pred             HHHHHHHHhhC---ccc--cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHHhHHHHHH
Confidence            56778888875   211  689999999999999999875554432        111   33566789999999999999


Q ss_pred             HHHHHHHHHHHhHHHhhhccccCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCcccccccc-ccCccCCCCCCeE
Q psy2466          96 YLRVRIEKIEKFTLDIVQQDFERSS-DNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEE-NKKLIKPDLNTYV  173 (224)
Q Consensus        96 YlR~RL~KIe~~~~~il~~~~~~~~-~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~-~~~i~~P~~d~~V  173 (224)
                      |++.|+..|..++|..+..   .|. .+-.||.+|.+|+++|+.++++|+.+..         +|. ..|  .||++.||
T Consensus        82 Y~~~R~~~lr~~~W~~g~~---lps~i~~sls~~E~eyf~~Ys~~La~y~~~~g---------idl~~~~--vPPk~lfI  147 (192)
T KOG3303|consen   82 YVYLRLARLRDLAWSYGLD---LPSSIRFSLSHEEEEYFKNYSNLLAEYMGPLG---------IDLTGDM--VPPKDLFI  147 (192)
T ss_pred             HHHHHHHHHHHHHHhcCCC---ccHHHHHhhhHHHHHHHHHHHHHHHHHhcCcc---------chhccCc--CCCccceE
Confidence            9999999999999987632   222 4567999999999999999999977641         222 234  49999999


Q ss_pred             EEEecccCCceEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCee
Q psy2466         174 FLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQ  222 (224)
Q Consensus       174 fvrv~~d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~  222 (224)
                      -|||++|+|+|.+++|      ++.|.|+|+|++|..+|++||.||.|.
T Consensus       148 ~VR~LkD~Ge~ete~g------~inL~KdS~hfl~r~d~E~LI~qG~v~  190 (192)
T KOG3303|consen  148 QVRVLKDYGEFETEDG------TINLKKDSQHFLKRTDCERLIAQGFVL  190 (192)
T ss_pred             EEEEecccCceeecCC------eEEeeccchhhccHhHHHHHHHccchh
Confidence            9999999999999876      499999999999999999999999765

>COG5230 Uncharacterized conserved protein [Function unknown]

Probab=99.90  E-value=4.9e-23  Score=165.82  Aligned_cols=164  Identities=13%  Similarity=0.210  Sum_probs=126.6

Q ss_pred             cCCCCCCCchHHHHHHHHHHHHHH----HHHhhcc------cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy2466          43 LSPEILPNKVEYIDCMLEQIKQME----ENIEKLR------KD--DIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLD  110 (224)
Q Consensus        43 ~aPeLLpy~~~lV~~v~~~I~~~e----e~i~~~~------~~--~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~~~  110 (224)
                      .-| |+||..+.|+.+..++++..    +.++..+      +.  .....+.....+|+|+||+||.+.|.+.+..++|.
T Consensus        19 Ld~-lp~Y~~d~i~~i~~E~~~ldr~~~eilqeasq~g~~~d~~~~~~y~~m~~~~erNkRcL~aY~~lR~~~L~~~~ws   97 (194)
T COG5230          19 LDP-LPPYRRDEIKAIEGENEHLDRRMEEILQEASQAGSGIDEELSVNYVMMKYFKERNKRCLRAYKFLRSAALFDSFWS   97 (194)
T ss_pred             ccC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence            355 99999999999999998763    3333211      11  22233445556699999999999999999999995


Q ss_pred             hhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeEEEEecccCCceEecCCC
Q psy2466         111 IVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMS  190 (224)
Q Consensus       111 il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~Vfvrv~~d~g~v~l~~~~  190 (224)
                      -+..-++  ...-.||.+|.+|+++|+.++..|.        ..|..+|.+.. ..||.+.||-|||++|||.|+++.| 
T Consensus        98 ~gk~m~s--~~dt~LSh~E~eyl~~Ys~ll~~yk--------g~~~~iDltgs-lvPP~~~FidVrvLkD~G~i~tEyg-  165 (194)
T COG5230          98 KGKRMKS--VGDTMLSHEEEEYLEKYSNLLREYK--------GPFKHIDLTGS-LVPPVQFFIDVRVLKDCGVIMTEYG-  165 (194)
T ss_pred             CCcchhh--hhccccchHHHHHHHHHHHHHHHHh--------CCceeeccccc-cCCchheeEEeEeecccchhccccc-
Confidence            3221111  1123499999999999999999973        34555665533 4599999999999999999998876 


Q ss_pred             CCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         191 ENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       191 ~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                           +++|.|+++|++|-++|++||.||.+.-|
T Consensus       166 -----~inL~Kdsq~fvr~~dverLI~qGfl~ki  194 (194)
T COG5230         166 -----LINLKKDSQYFVRKNDVERLIDQGFLRKI  194 (194)
T ss_pred             -----eEEeeccchhhhhHhHHHHHHHhhhhhcC
Confidence                 59999999999999999999999988644

>PF05916 Sld5: GINS complex protein; InterPro: IPR021151 DNA replication in eukaryotes results from a highly coordinated interaction between proteins, often as part of protein complexes, and the DNA template

Probab=97.82  E-value=2.7e-05  Score=58.12  Aligned_cols=44  Identities=27%  Similarity=0.425  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhhccccCCccCCCCCHHHH
Q psy2466          87 ERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDEL  130 (224)
Q Consensus        87 eRikyll~sYlR~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~  130 (224)
                      +|+|+||.+|+++|+.||.+++|++............+||+.|+
T Consensus        65 ~~ik~~l~~~~~~R~~KI~~~~~~~~~~~~~~~~~~~~Ls~~Er  108 (108)
T PF05916_consen   65 ERIKRLLRDYLRIRLKKILSLAWHLLSGNDDPQEILENLSEEER  108 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCHHHHHCTTCHHHHTTS-HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHccCCHhhC
Confidence            99999999999999999999999983111111125689999985

One of the key early steps leading to DNA replication is formation of the pre- replication complex, or pre-RC. The pre-RC is formed by the sequential binding of the origin recognition complex (ORC), Cdc6 and Cdt1 proteins, and the MCM complex. Activation of the pre-RC into the initiation complex (IC) is achieved via the action of S-phase kinases, eventually leading to the loading of the replication machinery. Recently, a novel replication complex, GINS (for Go, Ichi, Nii, and San; five, one, two, and three in Japanese), has been identified [, ]. The precise function of GINS is not known. However, genetic and two-hybrid interactions indicate that it mediates the loading of the enzymatic replication machinery at a step after the action of the S-phase kinases []. Furthermore, GINS may be a part of the replication machinery itself, since it is found associated with replicating DNA [, ]. Electron microscopy of GINS shows that it forms a ring-like structure [], reminiscent of the structure of PCNA [], the DNA polymerase delta replication clamp.This observation, coupled with the observed interactions for GINS, indicates that the complex may represent the replication clamp for DNA polymerase epsilon []. The GINS complex is essential for initiation of DNA replication in Xenopus egg extracts []. This 100 kDa stable complex includes Sld5, Psf1, Psf2, and Psf3. Homologues of these components are found also in other eukaryotes. ; PDB: 2EHO_L 2E9X_G 2Q9Q_H 3ANW_B.

>COG1711 DNA replication initiation complex subunit, GINS family [Replication, recombination, and repair]

Probab=96.33  E-value=0.1  Score=44.95  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2466          30 VLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR-KDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFT  108 (224)
Q Consensus        30 ~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~-~~~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~  108 (224)
                      ++++|.++.-.|++.-.|---+.+.=+.+-.-|+.++....+.. ..++...+....+++++...++-..-|+.||-+-|
T Consensus         2 ~i~eLR~~~~kErS~~~L~~Id~dFY~~v~~~I~eLe~~~~~~~~~~D~e~~~~~~~~et~~~~~r~ifqrR~~Kiv~~A   81 (223)
T COG1711           2 DIEELRRALYKERSQDGLTEIDEDFYRDVRSFIKELEDEAGRAEEARDIEKYLLTDRIETAKSDARSIFQRRYGKIVSRA   81 (223)
T ss_pred             CHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788888888999999999999999999999999998887653 34554444445899999999999999999999999


Q ss_pred             HHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy2466         109 LDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDK  146 (224)
Q Consensus       109 ~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~  146 (224)
                      |+=..-.     ..+.|+++|++|+....+.+....-+
T Consensus        82 ~~~~~~~-----~~~~Lt~eEk~ly~~l~~~I~~e~~~  114 (223)
T COG1711          82 IYDVPGE-----TISNLTPEEKELYEDLVNFIEDERIS  114 (223)
T ss_pred             HHhcccc-----chhcCCHHHHHHHHHHHHHHhhchhh
Confidence            9844321     14799999999999988888776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	224
2e9x_D	223	The Crystal Structure Of Human Gins Core Complex Le		1e-30
2eho_A	203	Crystal Structure Of Human Gins Complex Length = 20		2e-26

>pdb|2E9X|D Chain D, The Crystal Structure Of Human Gins Core Complex Length = 223

Iteration: 1
 Score =  129 bits (324), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Query: 10  DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
           D +  +     +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6   DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65
Query: 70  EKLRKDDXXXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHD 128
            + +++D              +V++SYLR R+ KIEKF   +++++  R   +   LS +
Sbjct: 66  RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125
Query: 129 ELKYAKSYLKSIDNHF-DKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
           EL +A+ ++ + +++  +  L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ + 
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185
Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             ++ + D  + L++GSQH++ Y++IA  V +  VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223

>pdb|2EHO|A Chain A, Crystal Structure Of Human Gins Complex Length = 203

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 121/199 (60%), Gaps = 3/199 (1%)
Query: 18  ANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDX 77
              +E  L+  +++E ++ AW NEK +PE+L +K E ++C+ EQ++  EEN+ + +++D 
Sbjct: 4   GGSEEVVLTPAELIERLEQAWXNEKFAPELLESKPEIVECVXEQLEHXEENLRRAKREDL 63
Query: 78  XXXXXXXXXXXXXFVITSYLRVRIEKIEKFTLDIVQQDFERS-SDNMYLSHDELKYAKSY 136
                        +V++SYLR R+ KIEKF   +++++  R   +   LS +EL +A+ +
Sbjct: 64  KVSIHQXEXERIRYVLSSYLRCRLXKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREF 123
Query: 137 LKSIDNHFDKY-LNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKED 195
             + +++     L   PPNL+ ++  + + KPDL++YVFLR  +   N+ +   ++ + D
Sbjct: 124 XANTESYLKNVALKHXPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVEPDTDEQRD 183
Query: 196 EFV-LDEGSQHILPYESIA 213
             + L++GSQH++ Y++IA
Sbjct: 184 YVIDLEKGSQHLIRYKTIA 202

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	224
2e9x_D	223	GINS complex subunit 4; eukaryotic DNA replication	1e-53
2q9q_C	196	DNA replication complex GINS protein PSF1; elongat	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06

>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A* Length = 223

 Score =  170 bits (432), Expect = 1e-53
 Identities = 75/218 (34%), Positives = 145/218 (66%), Gaps = 3/218 (1%)

Query: 10  DIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENI 69
           D +  +     +E  L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+
Sbjct: 6   DFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENL 65

Query: 70  EKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFTLDIVQQDFER-SSDNMYLSHD 128
            + +++D+++ IH+ME+ERIR+V++SYLR R+ KIEKF   +++++  R   +   LS +
Sbjct: 66  RRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPE 125

Query: 129 ELKYAKSYLKSIDNHFDK-YLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGKDVANVYIR 187
           EL +A+ ++ + +++     L  +PPNL+ ++  + + KPDL++YVFLR  +   N+ + 
Sbjct: 126 ELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKPDLDSYVFLRVRERQENILVE 185

Query: 188 DMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
             ++ + D  + L++GSQH++ Y++IA  V +  VQL+
Sbjct: 186 PDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 223

>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens} Length = 196

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 28/190 (14%), Positives = 69/190 (36%), Gaps = 22/190 (11%)

Query: 44  SPEILPNKVEYIDCMLEQIKQMEENIEKL---------RKDDIRIEIHRMEIERIRFVIT 94
             ++     + +  +LE++K + E  +                 I+     + R R    
Sbjct: 18  EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTV 77

Query: 95  SYLRVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPN 154
           +YL  R+ +I     +           +M  + +E+++  +Y +S+  +          +
Sbjct: 78  AYLYDRLLRIRALRWEYGSILPNALRFHM--AAEEMEWFNNYKRSLATYMRSLGGDEGLD 135

Query: 155 LRTLEENKKLIKPDLNTYVFLRAGKDVANVYIRDMSENKEDEFVLDEGSQHILPYESIAE 214
           +       + +KP  + Y+ +R  KD     + D         +L + SQH LP     +
Sbjct: 136 IT------QDMKPPKSLYIEVRCLKDYGEFEVDD-----GTSVLLKKNSQHFLPRWKCEQ 184

Query: 215 FVKNNDVQLL 224
            ++   ++ +
Sbjct: 185 LIRQGVLEHI 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-07
 Identities = 26/171 (15%), Positives = 60/171 (35%), Gaps = 21/171 (12%)

Query: 32  ETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK-DDIRIEIHRMEIERIR 90
           ET +  ++ + +        V+  DC  + ++ M ++I    + D I +      +    
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDA--VSGTL 65

Query: 91  FVITSYLRVRIEKIEKFTLDIVQQDFE-----RSSDNMYLSHDELKYAKSYLKSI--DNH 143
            +  + L  + E ++KF  ++++ +++       ++    S     Y       +  DN 
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQ 124

Query: 144 -FDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLR----AGKDV-ANVYIRD 188
            F KY          L +    ++P     V +     +GK   A      
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLGSGKTWVALDVCLS 173

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 51/202 (25%)

Query: 29  KVLETIKTAWKNEKLS-PEILPNKVEYIDCMLEQIKQMEENI-----EKLRKDDIRIEIH 82
            +L  I   W +   S   ++ NK+     + +Q K+   +I     E   K +    +H
Sbjct: 390 ILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 83  RMEIERIRFV----------------ITSYL---RVRIEKIEKFT------LDI--VQQD 115
           R  ++                       S++      IE  E+ T      LD   ++Q 
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 116 FERSSDNMYLSHD------ELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEEN------KK 163
               S     S        +LK+ K Y+   D  +++ +N +   L  +EEN        
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 164 LIKPDL---NTYVFLRAGKDVA 182
           L++  L   +  +F  A K V 
Sbjct: 567 LLRIALMAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	224
2e9x_D	223	GINS complex subunit 4; eukaryotic DNA replication	100.0
2q9q_C	196	DNA replication complex GINS protein PSF1; elongat	100.0
2e9x_A	149	DNA replication complex GINS protein PSF1; eukaryo	99.95
3anw_A	188	GINS51, putative uncharacterized protein; SLD5 sup	98.63
3anw_B	171	GINS23, putative uncharacterized protein; SLD5 sup	97.05

>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB: 2q9q_B* 2eho_A*

Probab=100.00  E-value=1.2e-62  Score=421.27  Aligned_cols=216  Identities=35%  Similarity=0.703  Sum_probs=181.9

Q ss_pred             ccccCCCCCCCccccccCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Q psy2466           9 FDIIETEPAANEDENCLSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIER   88 (224)
Q Consensus         9 ~~~~~~~~~~~~~~e~~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~~~~~~~l~~~eleR   88 (224)
                      -|+.++++++++++|.+|++++++.|+++|+||++||+||||++++|++++++|+.|++++..+.++++++.+||+||+|
T Consensus         5 ~~~~~~~~~~~~~~~~~t~~~~~~~L~~~w~nE~~aPeLlpy~~~lv~~v~~~i~~~~e~i~~~~~~~~~l~i~~~eleR   84 (223)
T 2e9x_D            5 VDFLGQDSDGGSEEVVLTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMER   84 (223)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHH
T ss_pred             hhhhhccccCCccccccChHHHHHHHHHHHHcccCCCcccCcchHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHH
Confidence            46777777888888899999999999999999999999999999999999999999999999888889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhccccCCccC-CCCCHHHHHHHHHHHHHHHHHHHHh-hccCCccccccccccCccC
Q psy2466          89 IRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDN-MYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIK  166 (224)
Q Consensus        89 ikyll~sYlR~RL~KIe~~~~~il~~~~~~~~~~-~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~~~~i~~  166 (224)
                      +||||+||||+||+||++|+||++..+..+.+.. ++||++|++||++|+.++++||.++ |++||+.++++|.+.|+++
T Consensus        85 ~k~~l~sYlR~RL~KIe~~~~~~~~~~~~r~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~~L~~~P~~~~~ld~~~m~~~  164 (223)
T 2e9x_D           85 IRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPK  164 (223)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCCCHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChhhhccccccccCCHHHHHHHHHHHHHHHHHHHhhhhhhCCHhhhccCccccccC
Confidence            9999999999999999999999998765543444 8999999999999999999999999 9999999999999899999


Q ss_pred             CCCCCeEEEEecccCCceEecCCC-CCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         167 PDLNTYVFLRAGKDVANVYIRDMS-ENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       167 P~~d~~Vfvrv~~d~g~v~l~~~~-~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      ||++.||||||++|+|+|.+++++ +.++.+++|.||++|++||++|++||.+|.|+||
T Consensus       165 P~~d~~VfvRvl~d~g~v~~~~~~g~~~~~~i~L~kgs~~~vry~~ve~LI~~G~velI  223 (223)
T 2e9x_D          165 PDLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI  223 (223)
T ss_dssp             CCTTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred             CCCCCeEEEEEeeccCeEEeCCCCCCccceeEEEccCCEEEEEHHHHHHHHHcCCEEeC
Confidence            999999999999999999998752 2233579999999999999999999999999997

>2q9q_C DNA replication complex GINS protein PSF1; elongated spindle, helix bundle, replication; HET: DNA; 2.36A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=301.67  Aligned_cols=179  Identities=17%  Similarity=0.230  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhhccCC-CCCCCchHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2466          30 VLETIKTAWKNEKLSP-EILPNKVEYIDCMLEQIKQMEENIEKLR---------KDDIRIEIHRMEIERIRFVITSYLRV   99 (224)
Q Consensus        30 ~~~~L~~~w~NEk~aP-eLLpy~~~lV~~v~~~I~~~ee~i~~~~---------~~~~~~~l~~~eleRikyll~sYlR~   99 (224)
                      .++.++.+|.+   +| +||||++++|++++++|+.|++++..+.         ...+.+.++|++|+|+||||+||||+
T Consensus         6 a~~Ll~el~r~---~~~~L~py~~dlv~~v~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~R~Kr~l~aYlr~   82 (196)
T 2q9q_C            6 AMELIRELHRA---PEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYD   82 (196)
T ss_dssp             HHHHHHHHHTS---CTTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556543   45 9999999999999999999998875332         24578999999999999999999999


Q ss_pred             HHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeEEEEecc
Q psy2466         100 RIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYVFLRAGK  179 (224)
Q Consensus       100 RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~Vfvrv~~  179 (224)
                      |++||++|+|+++..-  .+...++|||+|++||++|++++++|+.+...+     .++|.+. ..+||+|.||||||++
T Consensus        83 Rl~KI~~~~w~~~~~l--~~~~~~~LS~~E~~y~~~y~~ll~~y~~~~~~~-----~~ldlt~-~~~Pp~d~~V~VRvl~  154 (196)
T 2q9q_C           83 RLLRIRALRWEYGSIL--PNALRFHMAAEEMEWFNNYKRSLATYMRSLGGD-----EGLDITQ-DMKPPKSLYIEVRCLK  154 (196)
T ss_dssp             HHHHHHHHHHHTCSSC--CHHHHTTSCHHHHHHHHHHHHHHHHHHHHHSSS-----SCCCTTS-CCSCCCC---------
T ss_pred             HHHHHHHHHHHhcccC--CHHHHhhCCHHHHHHHHHHHHHHHHHHHhcccc-----cCcCccC-CCCCCCCCeEEEEEec
Confidence            9999999999987421  112468999999999999999999999876211     1345443 3589999999999999


Q ss_pred             cCCceEecCCCCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         180 DVANVYIRDMSENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       180 d~g~v~l~~~~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      |+|+|.+++| +    +|+|.||++|++||++|++||.+|.|++|
T Consensus       155 d~gev~~~~g-~----~v~L~kgs~~~lr~~~ve~LI~~G~leli  194 (196)
T 2q9q_C          155 DYGEFEVDDG-T----SVLLKKNSQHFLPRWKCEQLIRQGVLEHI  194 (196)
T ss_dssp             ---------------------------------------------
T ss_pred             ccCeEEecCC-C----EEEEeeCCEEEEEHHHHHHHHHCCceecc
Confidence            9999998776 2    49999999999999999999999999986

>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*

Probab=99.95  E-value=9.4e-28  Score=193.35  Aligned_cols=134  Identities=14%  Similarity=0.192  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcc---------cchhHHHHHHHHHHHHHHHHHHHH
Q psy2466          27 VQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLR---------KDDIRIEIHRMEIERIRFVITSYL   97 (224)
Q Consensus        27 ~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~---------~~~~~~~l~~~eleRikyll~sYl   97 (224)
                      |.+++++++++   +  +|+||||++++|++|+++|+.+++++..+.         ...+.+.+++++|+|+||||+||+
T Consensus         6 a~~Ll~el~rs---~--~~~Lppy~~dlVr~v~~ei~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~RnKrcLlAYl   80 (149)
T 2e9x_A            6 AMELIRELHRA---P--EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYL   80 (149)
T ss_dssp             HHHHHHHHHHS---C--TTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc---C--CCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555554   4  899999999999999999999998876531         135678899999999999999999


Q ss_pred             HHHHHHHHHhHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCCCCeE
Q psy2466          98 RVRIEKIEKFTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDLNTYV  173 (224)
Q Consensus        98 R~RL~KIe~~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~d~~V  173 (224)
                      |+|++||++++|+++..-  .+..+++|||+|++|+++|++++.+|+.+..+..     ++|.+.. .+||++.||
T Consensus        81 ~~Rl~kI~~~~w~~g~~L--~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~~~~~~-----~ldlt~~-l~PPk~l~i  148 (149)
T 2e9x_A           81 YDRLLRIRALRWEYGSVL--PNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDE-----GLDITQD-MKPPKSLYI  148 (149)
T ss_dssp             HHHHHHHHHHHHHHCSSC--CHHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSS-----CCCTTSC-CSCCC----
T ss_pred             HHHHHHHHHHHHHccccC--ChHHHhcCCHHHHHHHHHHHHHHHHHHHhcCccc-----ccCCCCC-CCCCCcccC
Confidence            999999999999986521  1125689999999999999999999988631111     1344333 369999997

>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=98.63  E-value=3.7e-06  Score=69.54  Aligned_cols=173  Identities=13%  Similarity=0.174  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy2466          31 LETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRK--DDIRIEIHRMEIERIRFVITSYLRVRIEKIEKFT  108 (224)
Q Consensus        31 ~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~--~~~~~~l~~~eleRikyll~sYlR~RL~KIe~~~  108 (224)
                      +++|...|.+|+.++.|.+-+.+.-+.+-+-|..++..+.....  ..+...++..++++++..+.+-.+.|+.||=+.+
T Consensus         3 i~eL~~il~~Er~s~~L~~i~~~FY~~v~~yI~~L~~~~~~~~~~~~~~e~~~~~~el~~~~~~~~~i~~~Rl~KIv~~a   82 (188)
T 3anw_A            3 IVKLRELLEAELSSTDLNELDEDFYVEFDSLIKALKLSAESSRERGEDVEERLYLAQLKIAESLMKEIIKLRLHKIVDLA   82 (188)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999998888888888888887765443  2344566788999999999999999999999998


Q ss_pred             HHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCcc-cc-cccc-ccC---ccCCCCCCeEEEEecccCC
Q psy2466         109 LDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPN-LR-TLEE-NKK---LIKPDLNTYVFLRAGKDVA  182 (224)
Q Consensus       109 ~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~-l~-~ld~-~~~---i~~P~~d~~Vfvrv~~d~g  182 (224)
                      ..         ...++|+++|+.++......+..+-..    +|.. .. +... ...   -+.+..+.||   ++.|.+
T Consensus        83 ~~---------~~~~~Lt~EEk~l~~~l~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~~~---v~~d~p  146 (188)
T 3anw_A           83 VE---------GKIAEMTAEEKRLFNVIRAFIEREELP----EISEEVQPQEESEAEAEYRSKEVPKEAYI---IQIDLP  146 (188)
T ss_dssp             HH---------TEECCCCHHHHHHHHHHHHHHTTCCCC----CC---------------CCCCCCCEEEEE---ECSCBC
T ss_pred             hh---------hhhhhCCHHHHHHHHHHHHHHHhcccc----ccccccccccccccccccccccCcCcceE---EEeCCC
Confidence            21         134799999999998876666442110    1110 00 0000 000   0111122344   389999


Q ss_pred             ceEecCCCCCCcceEE-ecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         183 NVYIRDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       183 ~v~l~~~~~~~~~~v~-L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      .|.-.++     .... |.+|++..+|......|+..|.++.|
T Consensus       147 ~i~~~d~-----r~Y~Pl~~~Dvv~LP~~~A~~L~kr~~a~~i  184 (188)
T 3anw_A          147 AVLGPDM-----KEYGPFMAGDMAIIPTVIGRALVEREAARRV  184 (188)
T ss_dssp             CEECTTS-----CEECCBCTTCEEEEEHHHHHHHHTTTSEEEC
T ss_pred             ceecCCc-----CcccCCCcccEEeecHHHHHHHHhCCCeEEe
Confidence            8873332     2477 99999999999999999999998754

>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}

Probab=97.05  E-value=0.0085  Score=48.59  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcccchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466          28 QKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRI-EIHRMEIERIRFVITSYLRVRIEKIEK  106 (224)
Q Consensus        28 ~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~~~~~~-~l~~~eleRikyll~sYlR~RL~KIe~  106 (224)
                      ..++.+|.+.-.-||.++.|-+-+.+.=.++..-|..+++.+...++.+... ...-.++.+.+..+++-.+.|+.||=+
T Consensus        55 ~~~I~eL~~il~eEr~~~~L~~LP~dFY~rvr~yI~~Le~ei~~~~~~d~~~~~~kl~elk~~~~~l~~L~~~Ri~KIv~  134 (171)
T 3anw_B           55 DKIIGEIDKVIAEERESEPLTLLPEGLYERAEFYAYYLENYVRLNPRESVDTINVKLTKLANLRKKLRDLKLIRFNKILK  134 (171)
T ss_dssp             HHHHHHHHHHHHHHTTSSSCCCCCTTHHHHHHHHHHHHHHHTTCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777998888888888888999999999998887665433221 111167999999999999999999999


Q ss_pred             hHHHhhhccccCCccCCCCCHHHHHHHHHHHHHHHHHH
Q psy2466         107 FTLDIVQQDFERSSDNMYLSHDELKYAKSYLKSIDNHF  144 (224)
Q Consensus       107 ~~~~il~~~~~~~~~~~~LS~~E~~f~~~y~~ll~~~~  144 (224)
                      .+..-   +.. ....++|||+|+.++..-...+..++
T Consensus       135 la~~~---~~~-~eil~rLTpEEk~iy~~l~~~i~~w~  168 (171)
T 3anw_B          135 AVMLR---PNS-LELLSRLAPEERRIYLQMSKIRNEWL  168 (171)
T ss_dssp             HHTC-----CC-HHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcC---CCc-HHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence            99431   110 02468999999999999988887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	224
d2e9xd1	145	a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5	5e-44
d2e9xd2	58	d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5	2e-12

>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]} Length = 145

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: SLD5 N-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  142 bits (360), Expect = 5e-44
 Identities = 52/145 (35%), Positives = 101/145 (69%), Gaps = 2/145 (1%)

Query: 25  LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRM 84
           L+  +++E ++ AW NEK +PE+L +K E ++C++EQ++ MEEN+ + +++D+++ IH+M
Sbjct: 1   LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQM 60

Query: 85  EIERIRFVITSYLRVRIEKIEKFTLDIVQQDFERSSDNM-YLSHDELKYAKSYLKSIDNH 143
           E+ERIR+V++SYLR R+ KIEKF   +++++  R       LS +EL +A+ ++ + +++
Sbjct: 61  EMERIRYVLSSYLRCRLMKIEKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESY 120

Query: 144 FDK-YLNMLPPNLRTLEENKKLIKP 167
                L  +PPNL+ ++  + + KP
Sbjct: 121 LKNVALKHMPPNLQKVDLFRAVPKP 145

>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: SLD5 C-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 2e-12
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 168 DLNTYVFLRAGKDVANVYIRDMSENKEDEFV-LDEGSQHILPYESIAEFVKNNDVQLL 224
           DL++YVFLR  +   N+ +   ++ + D  + L++GSQH++ Y++IA  V +  VQL+
Sbjct: 1   DLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	224
d2e9xd1	145	GINS complex subunit 4, SLD5 {Human (Homo sapiens)	100.0
d2e9xa1	144	DNA replication complex GINS protein PSF1 {Human (	99.85
d2e9xd2	58	GINS complex subunit 4, SLD5 {Human (Homo sapiens)	99.63

>d2e9xd1 a.278.1.4 (D:21-165) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: SLD5 N-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-47  Score=303.12  Aligned_cols=143  Identities=36%  Similarity=0.759  Sum_probs=131.7

Q ss_pred             cCHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2466          25 LSVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKLRKDDIRIEIHRMEIERIRFVITSYLRVRIEKI  104 (224)
Q Consensus        25 ~t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~~~~~~~~~l~~~eleRikyll~sYlR~RL~KI  104 (224)
                      +||++++++|+++|+|||+||+||||+.++|+++++||+.|+++++...++++++++++|||+|+||+++|||||||.||
T Consensus         1 ~t~~~~l~~L~~aW~NEr~aPELLp~~~~lv~~v~~qi~~~ee~~~~~~~~~l~~~i~~~EleRikfllrsYLR~RL~KI   80 (145)
T d2e9xd1           1 LTPAELIERLEQAWMNEKFAPELLESKPEIVECVMEQLEHMEENLRRAKREDLKVSIHQMEMERIRYVLSSYLRCRLMKI   80 (145)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCSSCCCCCHHHHHHHHHHHHHTTCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhccChhccCCcHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhHHHhhhccccCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHh-hccCCccccccccccCccCC
Q psy2466         105 EKFTLDIVQQDFERSS-DNMYLSHDELKYAKSYLKSIDNHFDKY-LNMLPPNLRTLEENKKLIKP  167 (224)
Q Consensus       105 e~~~~~il~~~~~~~~-~~~~LS~~E~~f~~~y~~ll~~~~~~~-L~~lp~~l~~ld~~~~i~~P  167 (224)
                      |+|+.||+.++..++. ..++||++|++||++|..++++||.++ |++||+++|++|...||++|
T Consensus        81 ek~~~hil~~~~~~~~~~~~~LS~~E~~fa~~~~~~~~~h~~~s~L~~~P~~lq~ld~~~~v~~P  145 (145)
T d2e9xd1          81 EKFFPHVLEKEKTRPEGEPSSLSPEELAFAREFMANTESYLKNVALKHMPPNLQKVDLFRAVPKP  145 (145)
T ss_dssp             HHTHHHHHHHHHTCCTTSCCSSCHHHHHHHHHHHHHHHHHHHHHTGGGSCGGGCCCCHHHHSCCC
T ss_pred             HHhHHHHHhhhccCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHcccccccCCCC
Confidence            9999999998776654 568999999999999999999999999 99999999999999999988

>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: GINS helical bundle-like
superfamily: GINS helical bundle-like
family: PSF1 N-terminal domain-like
domain: DNA replication complex GINS protein PSF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=149.48  Aligned_cols=130  Identities=14%  Similarity=0.194  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHHhhccCCCCCCCchHHHHHHHHHHHHHHHHHhhc----cc-----chhHHHHHHHHHHHHHHHHHHH
Q psy2466          26 SVQKVLETIKTAWKNEKLSPEILPNKVEYIDCMLEQIKQMEENIEKL----RK-----DDIRIEIHRMEIERIRFVITSY   96 (224)
Q Consensus        26 t~~~~~~~L~~~w~NEk~aPeLLpy~~~lV~~v~~~I~~~ee~i~~~----~~-----~~~~~~l~~~eleRikyll~sY   96 (224)
                      +|.++|.+|+++   +  ...|+||++++|+.|+++++.+.+.+..+    ..     ....+.++|..++|+|+||.+|
T Consensus         5 ~a~~Li~elkrs---~--~~~LPpyn~dlvr~i~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~RNKRCLLAY   79 (144)
T d2e9xa1           5 KAMELIRELHRA---P--EGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAY   79 (144)
T ss_dssp             HHHHHHHHHHHS---C--TTCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---c--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence            578899999974   2  13599999999999999999886555432    21     1245678999999999999999


Q ss_pred             HHHHHHHHHHhHHHhhhccccCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCccccccccccCccCCCC
Q psy2466          97 LRVRIEKIEKFTLDIVQQDFERSS-DNMYLSHDELKYAKSYLKSIDNHFDKYLNMLPPNLRTLEENKKLIKPDL  169 (224)
Q Consensus        97 lR~RL~KIe~~~~~il~~~~~~~~-~~~~LS~~E~~f~~~y~~ll~~~~~~~L~~lp~~l~~ld~~~~i~~P~~  169 (224)
                      ++.|+.||+.++|..+..   .|+ .++.||+.|++|+++|++++.+|+.+..     ...++|.+..+ +||+
T Consensus        80 ~~~R~~ri~~lrW~~g~~---Lp~~~~~~Ls~~E~eyf~~Ys~lL~~Y~~~~g-----~~~~lDLt~dl-~PPk  144 (144)
T d2e9xa1          80 LYDRLLRIRALRWEYGSV---LPNALRFHMAAEEMEWFNNYKRSLATYMRSLG-----GDEGLDITQDM-KPPK  144 (144)
T ss_dssp             HHHHHHHHHHHHHHHCSS---CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSS-----SSSCCCTTSCC-SCCC
T ss_pred             HHHHHHHHHHHHhccCCC---CcHHHHhhCCHHHHHHHHHHHHHHHHHHHhcC-----CCCCccccCCC-CCcC
Confidence            999999999999987543   333 5689999999999999999999976631     12345555443 6775

>d2e9xd2 d.344.1.3 (D:166-223) GINS complex subunit 4, SLD5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: GINS/PriA/YqbF domain
superfamily: PriA/YqbF domain
family: SLD5 C-terminal domain-like
domain: GINS complex subunit 4, SLD5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-16  Score=103.39  Aligned_cols=57  Identities=37%  Similarity=0.664  Sum_probs=53.2

Q ss_pred             CCCCeEEEEecccCCceEecCC-CCCCcceEEecCCCEEEEehhhHHHHHHcCCeeeC
Q psy2466         168 DLNTYVFLRAGKDVANVYIRDM-SENKEDEFVLDEGSQHILPYESIAEFVKNNDVQLL  224 (224)
Q Consensus       168 ~~d~~Vfvrv~~d~g~v~l~~~-~~~~~~~v~L~kgs~~~l~y~~I~~Lv~~G~v~LI  224 (224)
                      |+|+|||+||++....|.++++ |++++..++|.+||+|++||+.|.+||.+|.|+||
T Consensus         1 NldsyVFLrvn~~~~~ilv~~e~D~q~d~~iDle~GSQHimrY~~ia~LV~~gaVqLI   58 (58)
T d2e9xd2           1 DLDSYVFLRVRERQENILVEPDTDEQRDYVIDLEKGSQHLIRYKTIAPLVASGAVQLI   58 (58)
T ss_dssp             CTTCEEEEEESSCEEEEEECCSSCGGGCEEEEECTTCEEEEEHHHHHHHHHHTSEEEC
T ss_pred             CCcceEEEEeccccCceEECCccCcccceeEecccCceeEEeehhHHHHHhcCceeeC
Confidence            5899999999999999999876 66678899999999999999999999999999997