Psyllid ID: psy2473

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210---
MTLEGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK
cccccHHHHHHHHHcHHHHHHccccccccccccccccccccccccHHHHHHHHHccccHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHcccHHHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccccccccc
ccccccHHHHHHHHcHHHHHHccccEEEccccccEEEEccccccccHHHHHHHHccccHHHHHHHcccccccccEEcccEEEEcccccHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHcccHHHHHHHHcccEEEEcccEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEccHHHHEccccccc
MTLEGELEQQLLQANPILEafgnaktvkndnssrfvlhqskgkssswktltvsssgatpeqrkefiledpktylflsngnlpvpgvddaVEFQATVQAMNIMGmtnedysaslpdnTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK
MTLEGELEQQLLQANPILEAFGNAKTVKNDNSSRFVlhqskgkssswktltvsssgatpeqrkEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRinrsldrtkRQVYFKLINRYGIILCFLFQSIVK
MTlegeleqqllqANPILEAFGNAKTVKNDNSSRFVLHQSKGkssswktltvsssGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK
****************************************************************FILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSI**
****GEL*QQLLQANPILEAFGNAKTVKNDNSSRFVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDY*****DNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIV*
MTLEGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL***********************QRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK
****GELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQS***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLEGELEQQLLQANPILEAFGNAKTVKNDNSSRFVLHQSKGKSSSWKTLTVSSSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTNEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQVYFKLINRYGIILCFLFQSIVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query213 2.2.26 [Sep-21-2011]
Q99323 2057 Myosin heavy chain, non-m yes N/A 0.882 0.091 0.616 1e-76
Q9JLT0 1976 Myosin-10 OS=Rattus norve yes N/A 0.877 0.094 0.468 1e-53
Q27991 1976 Myosin-10 OS=Bos taurus G yes N/A 0.877 0.094 0.468 1e-53
P35580 1976 Myosin-10 OS=Homo sapiens yes N/A 0.877 0.094 0.468 1e-53
Q61879 1976 Myosin-10 OS=Mus musculus yes N/A 0.877 0.094 0.468 1e-53
P35579 1960 Myosin-9 OS=Homo sapiens no N/A 0.882 0.095 0.458 1e-51
Q258K2 1960 Myosin-9 OS=Canis familia no N/A 0.882 0.095 0.458 1e-51
P14105 1959 Myosin-9 OS=Gallus gallus no N/A 0.882 0.095 0.454 1e-51
P10587 1979 Myosin-11 OS=Gallus gallu no N/A 0.877 0.094 0.439 2e-51
Q8VDD5 1960 Myosin-9 OS=Mus musculus no N/A 0.882 0.095 0.454 2e-51
>sp|Q99323|MYSN_DROME Myosin heavy chain, non-muscle OS=Drosophila melanogaster GN=zip PE=1 SV=2 Back     alignment and function desciption
 Score =  285 bits (730), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/240 (61%), Positives = 173/240 (72%), Gaps = 52/240 (21%)

Query: 4   EGELEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------VLHQSK 41
           EGELEQQLLQANPILEAFGNAKTVKNDNSSRF                      +L +S+
Sbjct: 303 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGFISGANIETYLLEKSR 362

Query: 42  G--KSSSWKTLTVSS---SGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATV 96
              ++   +T  +     +GATPEQR++FIL+D K+Y FLSNG+LPVPGVDD  EFQATV
Sbjct: 363 AIRQAKDERTFHIFYQLLAGATPEQREKFILDDVKSYAFLSNGSLPVPGVDDYAEFQATV 422

Query: 97  QAMNIMGMTNEDYS-------------------------ASLPDNTVAQKIAKLLGLSIT 131
           ++MNIMGMT+ED++                         A+LPDNTVAQKIA LLGLS+T
Sbjct: 423 KSMNIMGMTSEDFNSIFRIVSAVLLFGSMKFRQERNNDQATLPDNTVAQKIAHLLGLSVT 482

Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
           +MT+AFL PRIKVGRDFVTK+QTKEQVEFAVEAI+KACYERMF+WLVNRINRSLDRTKRQ
Sbjct: 483 DMTRAFLTPRIKVGRDFVTKAQTKEQVEFAVEAIAKACYERMFKWLVNRINRSLDRTKRQ 542
Nonmuscle myosin appears to be responsible for cellularization. Required for morphogenesis and cytokinesis.
Drosophila melanogaster (taxid: 7227)
>sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1 SV=1 Back     alignment and function description
>sp|Q27991|MYH10_BOVIN Myosin-10 OS=Bos taurus GN=MYH10 PE=2 SV=2 Back     alignment and function description
>sp|P35580|MYH10_HUMAN Myosin-10 OS=Homo sapiens GN=MYH10 PE=1 SV=3 Back     alignment and function description
>sp|Q61879|MYH10_MOUSE Myosin-10 OS=Mus musculus GN=Myh10 PE=1 SV=2 Back     alignment and function description
>sp|P35579|MYH9_HUMAN Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4 Back     alignment and function description
>sp|Q258K2|MYH9_CANFA Myosin-9 OS=Canis familiaris GN=MYH9 PE=2 SV=1 Back     alignment and function description
>sp|P14105|MYH9_CHICK Myosin-9 OS=Gallus gallus GN=MYH9 PE=2 SV=1 Back     alignment and function description
>sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4 Back     alignment and function description
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 OS=Mus musculus GN=Myh9 PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
307214547 1830 Myosin heavy chain, non-muscle [Harpegna 0.877 0.102 0.635 3e-77
383850896 1968 PREDICTED: myosin heavy chain, non-muscl 0.877 0.095 0.635 6e-77
380023226 1967 PREDICTED: LOW QUALITY PROTEIN: myosin h 0.877 0.095 0.635 6e-77
328790487 1967 PREDICTED: myosin heavy chain, non-muscl 0.877 0.095 0.635 6e-77
345486457 1882 PREDICTED: LOW QUALITY PROTEIN: myosin h 0.877 0.099 0.635 8e-77
328710648 1980 PREDICTED: myosin heavy chain, non-muscl 0.877 0.094 0.631 5e-76
332019192 2033 Myosin heavy chain, non-muscle [Acromyrm 0.877 0.091 0.631 1e-75
340711721 1969 PREDICTED: myosin heavy chain, non-muscl 0.877 0.094 0.627 2e-75
340711723 1979 PREDICTED: myosin heavy chain, non-muscl 0.877 0.094 0.627 2e-75
350412852 1967 PREDICTED: myosin heavy chain, non-muscl 0.877 0.095 0.627 2e-75
>gi|307214547|gb|EFN89532.1| Myosin heavy chain, non-muscle [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  293 bits (750), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 172/239 (71%), Gaps = 52/239 (21%)

Query: 5   GELEQQLLQANPILEAFGNAKTVKNDNSSRF----------------------VLHQSKG 42
           GELEQQLLQANPILEAFGNAKTVKNDNSSRF                      +L +S+ 
Sbjct: 78  GELEQQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDASGYIAGANIETYLLEKSRA 137

Query: 43  --KSSSWKTLTVSS---SGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQ 97
             ++   +T  +     +GA+PEQ+KEFILEDPK Y FLSNG LPVPGVDD+ EF +TV+
Sbjct: 138 IRQAKDERTFHIFYQLLAGASPEQKKEFILEDPKHYPFLSNGALPVPGVDDSAEFFSTVK 197

Query: 98  AMNIMGMTNEDYS-------------------------ASLPDNTVAQKIAKLLGLSITE 132
           +M+IMGMTNED+S                         A+LPDNTVAQKI+ LLGLS+TE
Sbjct: 198 SMHIMGMTNEDFSSIFRIVSAVMLFGSMQFRQERNSDQATLPDNTVAQKISHLLGLSVTE 257

Query: 133 MTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
           MTKAFLKPRIKVGRDFVTK+QTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ
Sbjct: 258 MTKAFLKPRIKVGRDFVTKAQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 316

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|383850896|ref|XP_003701010.1| PREDICTED: myosin heavy chain, non-muscle-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380023226|ref|XP_003695426.1| PREDICTED: LOW QUALITY PROTEIN: myosin heavy chain, non-muscle-like [Apis florea] Back     alignment and taxonomy information
>gi|328790487|ref|XP_623323.3| PREDICTED: myosin heavy chain, non-muscle [Apis mellifera] Back     alignment and taxonomy information
>gi|345486457|ref|XP_003425478.1| PREDICTED: LOW QUALITY PROTEIN: myosin heavy chain, non-muscle [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328710648|ref|XP_001949414.2| PREDICTED: myosin heavy chain, non-muscle isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|332019192|gb|EGI59702.1| Myosin heavy chain, non-muscle [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340711721|ref|XP_003394419.1| PREDICTED: myosin heavy chain, non-muscle-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|340711723|ref|XP_003394420.1| PREDICTED: myosin heavy chain, non-muscle-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350412852|ref|XP_003489788.1| PREDICTED: myosin heavy chain, non-muscle-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query213
ZFIN|ZDB-GENE-030616-162 1992 myh10 "myosin, heavy chain 10, 0.399 0.042 0.662 3.9e-44
UNIPROTKB|Q27991 1976 MYH10 "Myosin-10" [Bos taurus 0.399 0.043 0.674 6e-44
UNIPROTKB|P35580 1976 MYH10 "Myosin-10" [Homo sapien 0.399 0.043 0.674 6e-44
MGI|MGI:1930780 1976 Myh10 "myosin, heavy polypepti 0.399 0.043 0.674 6e-44
RGD|71000 1976 Myh10 "myosin, heavy chain 10, 0.399 0.043 0.674 6e-44
UNIPROTKB|G3V9Y1 1976 Myh10 "Myosin-10" [Rattus norv 0.399 0.043 0.674 6e-44
UNIPROTKB|F8W6L6 1992 MYH10 "Myosin-10" [Homo sapien 0.399 0.042 0.674 6.2e-44
UNIPROTKB|F1LMQ5 2009 Myh10 "Myosin-10" [Rattus norv 0.399 0.042 0.674 6.4e-44
UNIPROTKB|F1LQ02 2013 Myh10 "Myosin-10" [Rattus norv 0.399 0.042 0.674 6.5e-44
UNIPROTKB|F1PVV7 2046 MYH10 "Uncharacterized protein 0.399 0.041 0.674 6.9e-44
ZFIN|ZDB-GENE-030616-162 myh10 "myosin, heavy chain 10, non-muscle" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 304 (112.1 bits), Expect = 3.9e-44, Sum P(3) = 3.9e-44
 Identities = 57/86 (66%), Positives = 73/86 (84%)

Query:   106 NEDYSASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAI 165
             N D  AS+P+NT AQK+  LLG+++ E T+A L PRIKVGRD+V K+QTKEQ +FAVEA+
Sbjct:   385 NTD-QASMPENTAAQKLCHLLGMNVMEFTRAILSPRIKVGRDYVQKAQTKEQADFAVEAL 443

Query:   166 SKACYERMFRWLVNRINRSLDRTKRQ 191
             +KA YER+FRWLV+RIN++LDRTKRQ
Sbjct:   444 AKATYERLFRWLVHRINKALDRTKRQ 469
GO:0016459 "myosin complex" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0051015 "actin filament binding" evidence=IEA
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003779 "actin binding" evidence=IEA
UNIPROTKB|Q27991 MYH10 "Myosin-10" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P35580 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1930780 Myh10 "myosin, heavy polypeptide 10, non-muscle" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|71000 Myh10 "myosin, heavy chain 10, non-muscle" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V9Y1 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F8W6L6 MYH10 "Myosin-10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMQ5 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1LQ02 Myh10 "Myosin-10" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVV7 MYH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q99323MYSN_DROMENo assigned EC number0.61660.88260.0913yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-81
smart00242 677 smart00242, MYSc, Myosin 5e-59
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 2e-58
cd00124 679 cd00124, MYSc, Myosin motor domain 2e-45
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 3e-42
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 2e-39
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 3e-33
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 8e-33
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 5e-29
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 2e-26
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 4e-22
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 8e-20
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 2e-16
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 1e-14
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 2e-14
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 0.004
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information 
 Score =  255 bits (655), Expect = 1e-81
 Identities = 100/248 (40%), Positives = 136/248 (54%), Gaps = 61/248 (24%)

Query: 4   EGELEQQLLQANPILEAFGNAKTVKNDNSSRF---------------------------- 35
           +G LE Q+LQANPILEAFGNAKTV+NDNSSRF                            
Sbjct: 132 QGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADIETYLLEKSR 191

Query: 36  VLHQSKGKSSS---WKTLTVSSSGATPEQRKEFILED-PKTYLFLSNGNLPVPGVDDAVE 91
           V+ Q+ G+ +    ++ L    SGA PE +   +L   P  Y +LS G L +PGVDDA E
Sbjct: 192 VVFQASGERNYHIFYQLL----SGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEE 247

Query: 92  FQATVQAMNIMGMTNEDYS-------------------------ASLPDNTVAQKIAKLL 126
           F+ T +A +I+G ++E+ +                         A L     A K A LL
Sbjct: 248 FKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGTEEADKAAHLL 307

Query: 127 GLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLD 186
           G++  ++ KA L PRIKVGR++VTK Q  EQV F+V A++KA YER+F WLV RIN++LD
Sbjct: 308 GVNSADLLKALLHPRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLD 367

Query: 187 RTKRQVYF 194
             +++ YF
Sbjct: 368 TKQQRAYF 375

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 213
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
PTZ00014 821 myosin-A; Provisional 100.0
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 100.0
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 100.0
KOG0164|consensus 1001 100.0
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
KOG0162|consensus 1106 100.0
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG0163|consensus 1259 100.0
KOG0161|consensus 1930 100.0
KOG0160|consensus 862 100.0
KOG4229|consensus 1062 100.0
PHA0197667 helix-turn-helix protein 80.23
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-63  Score=472.00  Aligned_cols=205  Identities=37%  Similarity=0.601  Sum_probs=191.2

Q ss_pred             cccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------C----CCC--------Cccch---------hHHHHHHhcC
Q psy2473           4 EGELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------H----QSK--------GKSSS---------WKTLTVSSSG   56 (213)
Q Consensus         4 ~~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~----~~G--------EksRv---------fhiFYqll~g   56 (213)
                      .+.|+++|+++||||||||||||+||||||||||      +    ++|        |||||         |||||||++|
T Consensus       187 ~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G  266 (1463)
T COG5022         187 ISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAG  266 (1463)
T ss_pred             HHHHHHHHHhcchHHHHhccccccccCCcccccceEEEEECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcC
Confidence            4589999999999999999999999999999999      3    344        99999         9999999999


Q ss_pred             CCHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------e
Q psy2473          57 ATPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------A  111 (213)
Q Consensus        57 ~~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~  111 (213)
                      .++..++.+++.++.+|.|+++++|. ++|++|.++|+.++.||+++||+.+|+.                        +
T Consensus       267 ~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~g~a  346 (1463)
T COG5022         267 DPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRNGAA  346 (1463)
T ss_pred             ChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeecccchh
Confidence            77777788888899999999999776 9999999999999999999999999998                        4


Q ss_pred             ecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCc
Q psy2473         112 SLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ  191 (213)
Q Consensus       112 ~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~  191 (213)
                      .+.+++.++.+|.|||||+..|.++|++|.+++++|.|.+|++..||..+||||||+||++||+|||++||.+|..... 
T Consensus       347 ~~~~~~~~~~~c~LLgId~~~f~k~lvk~~ikt~~E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~-  425 (1463)
T COG5022         347 IFSDNSVLDKACYLLGIDPSLFVKWLVKRQIKTGGEWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAA-  425 (1463)
T ss_pred             hcCCchHHHHHHHHhCCCHHHHHHHHHHhHhhcCceEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-
Confidence            6778889999999999999999999999999999999999999999999999999999999999999999999987655 


Q ss_pred             ceeeecceeeeeeccCCCccCC
Q psy2473         192 VYFKLINRYGIILCFLFQSIVK  213 (213)
Q Consensus       192 ~~~~~~d~~GilDifGFE~~~~  213 (213)
                          .-.+||||||||||.|+|
T Consensus       426 ----~~~fIGVLDIyGFEiFEk  443 (1463)
T COG5022         426 ----ASNFIGVLDIYGFEIFEK  443 (1463)
T ss_pred             ----cccceeEEeecchhhhcc
Confidence                235899999999999997

>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>PHA01976 helix-turn-helix protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 4e-46
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 8e-46
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 8e-46
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 9e-46
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-45
1br2_A 791 Smooth Muscle Myosin Motor Domain Complexed With Mg 1e-45
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 6e-41
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 3e-29
4db1_A 783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 4e-27
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 8e-27
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 2e-26
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 5e-26
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 7e-25
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 7e-25
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 8e-25
1b7t_A 835 Myosin Digested By Papain Length = 835 8e-25
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 8e-25
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 3e-24
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 3e-24
3mkd_A 692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 3e-23
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-23
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 4e-23
2y9e_X 758 Structural Basis For The Allosteric Interference Of 2e-22
2y0r_X 758 Structural Basis For The Allosteric Interference Of 3e-22
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 3e-22
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 3e-22
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 3e-22
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 3e-22
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 3e-22
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-22
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 3e-22
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 4e-22
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 4e-22
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 4e-22
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 4e-22
2x9h_A 695 Crystal Structure Of Myosin-2 Motor Domain In Compl 5e-22
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 6e-22
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 6e-22
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 7e-22
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 7e-22
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 7e-22
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 8e-22
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 2e-21
1w8j_A 766 Crystal Structure Of Myosin V Motor Domain - Nucleo 2e-11
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 2e-11
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 4e-11
4a7f_C 697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 2e-09
1lkx_A 697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 4e-09
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 4e-08
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 4e-08
2x51_A 789 M6 Delta Insert1 Length = 789 4e-08
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 2e-06
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 3e-05
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 3e-05
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 3e-05
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 3e-05
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 3e-05
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 3e-05
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 3e-05
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 3e-05
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (458), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 132/230 (57%), Gaps = 52/230 (22%)
Query: 14  ANPILEAFGNAKTVKNDNSSRF----------------------VLHQSKGXXXXXXXXX 51
           ANPILEAFGNAKTVKNDNSSRF                      +L +S+          
Sbjct: 226 ANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERT 285
Query: 52  XXX-----XGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATVQAMNIMGMTN 106
                    GA+ + R + +LE    Y FLSNG++P+P   D   FQ T++AM IMG T 
Sbjct: 286 FHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIMGFTE 345
Query: 107 EDYS-------------------------ASLPDNTVAQKIAKLLGLSITEMTKAFLKPR 141
           E+ +                         AS+PDNT AQK+  L+G+++T+ T++ L PR
Sbjct: 346 EEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFTRSILTPR 405
Query: 142 IKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
           IKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+TKRQ
Sbjct: 406 IKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQ 455
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query213
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 8e-72
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 9e-72
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 7e-71
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-69
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 3e-68
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 6e-68
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-67
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 1e-64
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-64
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 3e-58
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
 Score =  230 bits (590), Expect = 8e-72
 Identities = 77/240 (32%), Positives = 116/240 (48%), Gaps = 52/240 (21%)

Query: 4   EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLT------- 51
            G LEQQ+LQANPILEAFGNAKT +N+NSSRF     +   S G  S     +       
Sbjct: 208 SGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASIQSYLLEKSR 267

Query: 52  VSS---------------SGATPEQRKEFILEDPKTYLFLSNGN-LPVPGVDDAVEFQAT 95
           V                 +GAT E++K   L  P+++ +L+    + + GV D+ EF+ T
Sbjct: 268 VVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKIT 327

Query: 96  VQAMNIMGMTNED------------------------YSASLPDNTVAQKIAKLLGLSIT 131
            QAM+I+G + E+                          A L D T     + + G++ +
Sbjct: 328 RQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPS 387

Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
            + KA ++PRI  GRD V +    E+   + +A+ KA Y R+F WLV +IN  L + ++ 
Sbjct: 388 VLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA 447
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 100.0
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 100.0
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 100.0
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
3mhs_C99 SAGA-associated factor 11; multi-protein complex, 86.22
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
Probab=100.00  E-value=8.8e-63  Score=460.86  Aligned_cols=204  Identities=29%  Similarity=0.458  Sum_probs=183.7

Q ss_pred             ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473           5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA   57 (213)
Q Consensus         5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~   57 (213)
                      ++|+++|++|||||||||||||++|+|||||||      +..|            |||||         ||||||||+|+
T Consensus       130 ~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~~g~i~Ga~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~  209 (697)
T 1lkx_A          130 ERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYLLEKSRVVGRTQGERSFHIFYQMLKGL  209 (697)
T ss_dssp             HHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECTTCCEEEEEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTS
T ss_pred             ccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECCCCCEeeeeeeeeeccCceeeeecCCCCceeehhHHhcCC
Confidence            478999999999999999999999999999999      5555            99999         99999999999


Q ss_pred             CHHHHhhcccC-CCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee-------------------------
Q psy2473          58 TPEQRKEFILE-DPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS-------------------------  110 (213)
Q Consensus        58 ~~~~~~~l~L~-~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~-------------------------  110 (213)
                      +++++++|+|. ++++|+||+++++. +++++|+++|+.++.||++|||+++|+.                         
T Consensus       210 ~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~lG~~~~e~~~i~~ilaaILhLGNi~F~~~~~~~~  289 (697)
T 1lkx_A          210 SQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRT  289 (697)
T ss_dssp             CHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCEEEETTC--
T ss_pred             CHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccceEeecccccC
Confidence            99999999998 99999999998765 7899999999999999999999999886                         


Q ss_pred             ----eecCChHHHHHHHHHhCCCHHHHHhhhhcceEeeC----ceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2473         111 ----ASLPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVG----RDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRIN  182 (213)
Q Consensus       111 ----~~~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~----~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN  182 (213)
                          +.+.+++.++.+|+||||++++|.++|+++++.++    +|.+++|++++||..+||||||+||+|||+|||++||
T Consensus       290 ~~~~~~v~~~~~l~~~a~LLgv~~~~L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA~~~rdalaK~lY~rLF~wlV~~IN  369 (697)
T 1lkx_A          290 GTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKIN  369 (697)
T ss_dssp             --CEEEESSHHHHHHHHHHHTSCHHHHHHHHHBCC----------CCCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeCCHHHHHHHHHhhCCCHHHHHHHHhccEEeeccCCCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                34567889999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             hhcccccCcceeeecceeeeeeccCCCccCC
Q psy2473         183 RSLDRTKRQVYFKLINRYGIILCFLFQSIVK  213 (213)
Q Consensus       183 ~~l~~~~~~~~~~~~d~~GilDifGFE~~~~  213 (213)
                      .+|.+....     ..+||||||||||+|++
T Consensus       370 ~~l~~~~~~-----~~~IGvLDI~GFE~f~~  395 (697)
T 1lkx_A          370 TIINCTTEK-----GPVIGILDIYGFEVFQN  395 (697)
T ss_dssp             HHHCCCSCC-----CCEEEEEECCCCCCCSS
T ss_pred             hhcCCCCCC-----ceeEEeeccccccccCc
Confidence            999875432     24799999999999974
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 213
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 2e-40
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-37
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 2e-37
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 1e-36
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-35
d1lkxa_ 684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 4e-31
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  143 bits (362), Expect = 2e-40
 Identities = 108/259 (41%), Positives = 145/259 (55%), Gaps = 56/259 (21%)

Query: 4   EGELEQQLLQANPILEAFGNAKTVKNDNSSRF-----VLHQSKGKSSSWKTLTVS----- 53
            GELE+QLLQANPILEAFGNAKTVKNDNSSRF     +     G        T       
Sbjct: 138 YGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSR 197

Query: 54  -----------------SSGATPEQRKEFILEDPKTYLFLSNGNLPVPGVDDAVEFQATV 96
                             +GA+ + R + +LE    Y FLSNG++P+P   D   FQ T+
Sbjct: 198 AIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETL 257

Query: 97  QAMNIMGMTNED-------------------------YSASLPDNTVAQKIAKLLGLSIT 131
           +AM IMG T E+                           AS+PDNT AQK+  L+G+++T
Sbjct: 258 EAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVT 317

Query: 132 EMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQ 191
           + T++ L PRIKVGRD V K+QTKEQ +FA+EA++KA +ER+FRW++ R+N++LD+TKRQ
Sbjct: 318 DFTRSILTPRIKVGRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDKTKRQ 377

Query: 192 VYFKLINRYGIILCFLFQS 210
               L    GI+    F+ 
Sbjct: 378 GASFL----GILDIAGFEI 392
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query213
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d2r1jl166 P22 C2 repressor, DNA-binding domain {Salmonella b 82.08
d2croa_65 cro 434 {Bacteriophage 434 [TaxId: 10712]} 80.02
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=4.4e-59  Score=436.24  Aligned_cols=203  Identities=38%  Similarity=0.587  Sum_probs=190.1

Q ss_pred             ccHHHHHhhhhHHHHHhcCcccCCCCCCccccc------CCCC------------Cccch---------hHHHHHHhcCC
Q psy2473           5 GELEQQLLQANPILEAFGNAKTVKNDNSSRFVL------HQSK------------GKSSS---------WKTLTVSSSGA   57 (213)
Q Consensus         5 ~~i~~~i~~~~~iLeaFGnA~T~~N~nSSRfgk------~~~G------------EksRv---------fhiFYqll~g~   57 (213)
                      ..++++|+++||||||||||||++|+|||||||      +..|            |||||         |||||||++|+
T Consensus       162 ~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~f~~~g~i~ga~i~~yLLEksRvv~~~~gErnfHIFYqll~g~  241 (712)
T d1d0xa2         162 GVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGA  241 (712)
T ss_dssp             CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECTTSCEEEEEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHS
T ss_pred             chHHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEEEEEcCCCccccceeEEeccCCceEEeeccccccHHHHHHHHhCC
Confidence            458999999999999999999999999999999      4444            99999         99999999999


Q ss_pred             CHHHHhhcccCCCcccccccCCCCC-CCCCchHHHHHHHHHHHHhcCCCcccee------------------------ee
Q psy2473          58 TPEQRKEFILEDPKTYLFLSNGNLP-VPGVDDAVEFQATVQAMNIMGMTNEDYS------------------------AS  112 (213)
Q Consensus        58 ~~~~~~~l~L~~~~~~~yl~~~~~~-~~~~~d~~~f~~l~~al~~lg~~~~e~~------------------------~~  112 (213)
                      +++++++|+|.++..|+||+++++. .++++|+++|+.++.||+.|||+++|+.                        +.
T Consensus       242 ~~~~~~~~~l~~~~~~~yL~~~~~~~~~~~dd~~~f~~~~~al~~lgfs~~e~~~i~~iLaaILhLGNi~F~~~~~~~~~  321 (712)
T d1d0xa2         242 TAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAV  321 (712)
T ss_dssp             CHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCCCBCCSSSSCB
T ss_pred             CHHHHHHhCCCCchhcccccCCCCcccCCcChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccceEeecCCccee
Confidence            9999999999999999999998765 7899999999999999999999999988                        45


Q ss_pred             cCChHHHHHHHHHhCCCHHHHHhhhhcceEeeCceeEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCcc
Q psy2473         113 LPDNTVAQKIAKLLGLSITEMTKAFLKPRIKVGRDFVTKSQTKEQVEFAVEAISKACYERMFRWLVNRINRSLDRTKRQV  192 (213)
Q Consensus       113 ~~~~~~l~~aA~LLgv~~~~L~~~L~~~~~~~~~e~v~~~~~~~~A~~~rDalak~LY~~LF~wIV~~IN~~l~~~~~~~  192 (213)
                      +.+++.++.+|+||||++++|.++|+++++.+++|.+++++++++|..+||||||+||++||+|||++||..|.+.... 
T Consensus       322 i~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e~i~~~l~~~~A~~~rdalaK~LY~~LF~wiV~~IN~~l~~~~~~-  400 (712)
T d1d0xa2         322 LKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKA-  400 (712)
T ss_dssp             CSCCHHHHHHHHHHTCCHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCS-
T ss_pred             cCCHHHHHHHHHHhCCChhHhhhhhcceeeccCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCccc-
Confidence            7788999999999999999999999999999999999999999999999999999999999999999999999876543 


Q ss_pred             eeeecceeeeeeccCCCccCC
Q psy2473         193 YFKLINRYGIILCFLFQSIVK  213 (213)
Q Consensus       193 ~~~~~d~~GilDifGFE~~~~  213 (213)
                           .+||||||||||+|++
T Consensus       401 -----~~IgiLDifGFE~f~~  416 (712)
T d1d0xa2         401 -----YFIGVLDISGFEIFKV  416 (712)
T ss_dssp             -----EEEEEEECCCCCCCSS
T ss_pred             -----ceeeeeeccccccccc
Confidence                 3789999999999974
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Back     information, alignment and structure
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Back     information, alignment and structure