Psyllid ID: psy2518

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
Protein Sequence
MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYTI
Secondary Structure (PSIPRED)
ccEEEEccEEEEEEEEcccccccccEEEEEEEEcccEEEEEEEcccccccccccccEEEEEEEEEEEEEccEEEEEEEEcccccccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHccccccccccccEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHcccEEEEEccccEcHHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
minricegEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVenecgeiptvLVQNKIdlldqsvvapeEADLLSRALGCRLMRTsvkedinvNSIFRYLTTKCLSELRQQEEeysingnglppyti
Flexible Loop (DISEMBL)
minricegeeVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLmrtsvkedinvnsIFRYLTTKCLSELRQqeeeysingnglppyti
Low Complexity Region (SEG)
MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYTI
Disordered region (IsUnstruct)
****ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL*******************
Disordered Region (DISOPRED)
*INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK************************
Disordered Region (DISEMBL)
MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYTI
Disordered Region (DISPRO)
MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYTI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	208	2.2.26 [Sep-21-2011]
Q9ULC3	237	Ras-related protein Rab-2	yes	N/A	0.581	0.510	0.694	8e-44
P35288	237	Ras-related protein Rab-2	yes	N/A	0.581	0.510	0.677	3e-42
P51153	203	Ras-related protein Rab-1	no	N/A	0.802	0.822	0.337	8e-20
Q5KTJ6	203	Ras-related protein Rab-1	N/A	N/A	0.721	0.738	0.344	2e-19
P17609	200	GTP-binding protein ypt2	yes	N/A	0.802	0.835	0.315	2e-19
Q58DS5	203	Ras-related protein Rab-1	no	N/A	0.802	0.822	0.314	4e-19
Q5U316	201	Ras-related protein Rab-3	no	N/A	0.658	0.681	0.330	1e-18
Q6PHN9	201	Ras-related protein Rab-3	no	N/A	0.658	0.681	0.330	1e-18
Q15286	201	Ras-related protein Rab-3	no	N/A	0.658	0.681	0.330	1e-18
Q9FPJ4	202	Ras-related protein RABD2	yes	N/A	0.735	0.757	0.327	3e-18

>sp|Q9ULC3|RAB23_HUMAN Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1

 Score =  176 bits (447), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 84/121 (69%), Positives = 98/121 (80%)

Query: 72  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
           E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ KV  E G+IP
Sbjct: 56  EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIP 115

Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQ 191
           TVLVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NVN +F+YL  K L +L+Q
Sbjct: 116 TVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQ 175

Query: 192 Q 192
           Q
Sbjct: 176 Q 176

Homo sapiens (taxid: 9606)

>sp|P35288|RAB23_MOUSE Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2

 Score =  171 bits (434), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 97/121 (80%)

Query: 72  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
           E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ KV  E G+IP
Sbjct: 56  EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP 115

Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQ 191
           T LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV+ +F+YL  K L +L+Q
Sbjct: 116 TALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQKLKQ 175

Query: 192 Q 192
           Q
Sbjct: 176 Q 176

Mus musculus (taxid: 10090)

>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 59/175 (33%), Positives = 86/175 (49%), Gaps = 8/175 (4%)

Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    +I F+    D+F   +   + +  K    + EG++++L +WDTAGQE F  IT A
Sbjct: 20  GKTCLIIRFA---EDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTA 76

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRGA   ++ +   D  SFE   +W   + EN    +  +L+ NK D+  +  V  E+A
Sbjct: 77  YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQA 136

Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYT 207
           D L+R  G R   TS K  +NV+  F  L       L +     S NGN  PP T
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFSSLARDI---LLKSGGRRSGNGNK-PPST 187

Could participate in polarized transport, in the assembly and/or the activity of tight junctions.

Homo sapiens (taxid: 9606)

>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 4/154 (2%)

Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    +I F+    D+F   +   + +  K    E EG+ ++L +WDTAGQE F  IT A
Sbjct: 20  GKTCLIIRFA---EDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTA 76

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRGA   ++ +   D  SFE   +W   + EN    +  +L+ NK D+  +  V  E+A
Sbjct: 77  YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQA 136

Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
           D L+R  G R   TS K  +NV+  F  L    L
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL 170

Could participate in polarized transport, in the assembly and/or the activity of tight junctions.

Mesocricetus auratus (taxid: 10036)

>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ypt2 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 4/171 (2%)

Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    ++ FS    DSF  +    + +  K    E +G+ ++L +WDTAGQE F  IT A
Sbjct: 21  GKSCLLLRFS---EDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTA 77

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEA 152
           YYRGA   ++ +   D+ SF+   +W   VE    E +  +L+ NK D  DQ  V+ E+ 
Sbjct: 78  YYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQG 137

Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGL 203
             L+  LG + +  S K ++NV+  F  L  +   +    E E+S   N +
Sbjct: 138 QALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNV 188

Protein transport. Probably involved in vesicular traffic.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 8/175 (4%)

Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    +I F+    D+F   +   + +  +    + EG++++L +WDTAGQE F  IT A
Sbjct: 20  GKTCLIIRFA---EDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTA 76

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRGA   ++ +   D  SFE   +W   + EN    +  +L+ NK D+  +  V  E+A
Sbjct: 77  YYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQA 136

Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPPYT 207
           D L+R  G R   TS K  +NV+  F  L    L     +     +  N  PP T
Sbjct: 137 DKLAREHGIRFFETSAKSSMNVDEAFSSLARDIL----LKSGGRRLKNNNKPPST 187

Could participate in polarized transport, in the assembly and/or the activity of tight junctions.

Bos taurus (taxid: 9913)

>sp|Q5U316|RAB35_RAT Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           ++F  ++   + V  K    E  GE+V+L +WDTAGQE F  IT  YYRG    ++ +  
Sbjct: 31  NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90

Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
              +SF     W  ++   C ++  +LV NK D  ++ VV  E+A   +  +G +L  TS
Sbjct: 91  TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150

Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
            KE++NV  +F      C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, Endosome (By similarity). Melanosome (By similarity). namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.

Rattus norvegicus (taxid: 10116)

>sp|Q6PHN9|RAB35_MOUSE Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           ++F  ++   + V  K    E  GE+V+L +WDTAGQE F  IT  YYRG    ++ +  
Sbjct: 31  NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90

Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
              +SF     W  ++   C ++  +LV NK D  ++ VV  E+A   +  +G +L  TS
Sbjct: 91  TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150

Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
            KE++NV  +F      C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, Endosome (By similarity). Melanosome (By similarity). namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.

Mus musculus (taxid: 10090)

>sp|Q15286|RAB35_HUMAN Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           ++F  ++   + V  K    E  GE+V+L +WDTAGQE F  IT  YYRG    ++ +  
Sbjct: 31  NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDV 90

Query: 108 IDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS 167
              +SF     W  ++   C ++  +LV NK D  ++ VV  E+A   +  +G +L  TS
Sbjct: 91  TSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETS 150

Query: 168 VKEDINVNSIFRYLTTKCLSEL 189
            KE++NV  +F      C++EL
Sbjct: 151 AKENVNVEEMF-----NCITEL 167

In the process of endocytosis, essential rate-limiting regulator of a fast recycling pathway back to the plasma membrane. During cytokinesis, required for the postfurrowing terminal steps, namely for intercellular bridge stability and abscission, possibly by controlling phosphatidylinositol 4,5-bis phosphate (PIP2) and SEPT2 localization at the intercellular bridge.

Homo sapiens (taxid: 9606)

>sp|Q9FPJ4|RAD2B_ARATH Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DS+  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++T+  
Sbjct: 31  DSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVTYDV 90

Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D +SF     W  +++    E +  +LV NK DL  Q VV+ E A   +  LG   + T
Sbjct: 91  TDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDLTSQKVVSTETAKAFADELGIPFLET 150

Query: 167 SVKEDINVNSIFRYLTTKCLSELRQQEEEYSINGNGLPP 205
           S K   NV   F  +T    + +  Q       G   PP
Sbjct: 151 SAKNATNVEEAFMAMTAAIKTRMASQPA-----GGAKPP 184

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
242015478	182	rab23, putative [Pediculus humanus corpo	0.663	0.758	0.791	4e-61
91087349	232	PREDICTED: similar to GA15247-PA [Tribol	0.524	0.469	0.837	3e-57
332374980	239	unknown [Dendroctonus ponderosae]	0.644	0.560	0.770	2e-56
242247191	231	GTP-binding protein YPTM1-like [Acyrthos	0.673	0.606	0.697	7e-55
357631098	222	putative rab23 [Danaus plexippus]	0.600	0.563	0.752	2e-52
307212547	240	Ras-related protein Rab-23 [Harpegnathos	0.620	0.537	0.705	3e-50
307167470	240	Ras-related protein Rab-23 [Camponotus f	0.620	0.537	0.705	6e-50
158288058	226	AGAP011565-PA [Anopheles gambiae str. PE	0.600	0.553	0.736	9e-50
332020425	240	Ras-related protein Rab-23 [Acromyrmex e	0.620	0.537	0.697	2e-49
383860301	240	PREDICTED: ras-related protein Rab-23-li	0.620	0.537	0.689	2e-49

>gi|242015478|ref|XP_002428380.1| rab23, putative [Pediculus humanus corporis] gi|212512992|gb|EEB15642.1| rab23, putative [Pediculus humanus corporis]

 Score =  239 bits (610), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 110/139 (79%), Positives = 129/139 (92%), Gaps = 1/139 (0%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           +GE+VRLMLWDTAGQEEFDAITKAYYRGAQACV+TFST +RDSFEA HSWK+KVE+ECGE
Sbjct: 2   KGEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLTFSTTNRDSFEAIHSWKLKVEDECGE 61

Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
           IPTVLVQNKIDL+DQSVV PEE + LS++LGC+L+RTSVKEDIN+NS+FRYL  KCLSE+
Sbjct: 62  IPTVLVQNKIDLIDQSVVEPEEVERLSQSLGCKLIRTSVKEDININSVFRYLAAKCLSEI 121

Query: 190 RQQEEEYSINGNGLPPYTI 208
            +QE+EYSI GNG+ P+TI
Sbjct: 122 HEQEKEYSI-GNGISPFTI 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91087349|ref|XP_975612.1| PREDICTED: similar to GA15247-PA [Tribolium castaneum] gi|270010613|gb|EFA07061.1| hypothetical protein TcasGA2_TC010038 [Tribolium castaneum]

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/123 (83%), Positives = 116/123 (94%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DRDSFEAAHSWK+KVENEC
Sbjct: 52  EVDGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVLAFSTTDRDSFEAAHSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTV+VQNKIDL+DQSVV PEEADLL+RALGCRL+RTSVKED+NV ++FR+L  +CL+
Sbjct: 112 GEIPTVIVQNKIDLMDQSVVNPEEADLLARALGCRLLRTSVKEDVNVAAVFRHLAARCLA 171

Query: 188 ELR 190
           ELR
Sbjct: 172 ELR 174

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374980|gb|AEE62631.1| unknown [Dendroctonus ponderosae]

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/135 (77%), Positives = 125/135 (92%), Gaps = 1/135 (0%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DRDSFEAAHSWK+KVENEC
Sbjct: 52  EVDGEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLAFSTTDRDSFEAAHSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTV+VQNKIDLL+QSVV PEEA+LL+RALGCRL+RTSVKED+NV+++FR+L  +CL+
Sbjct: 112 GEIPTVIVQNKIDLLEQSVVNPEEAELLARALGCRLVRTSVKEDVNVSAVFRHLAQRCLA 171

Query: 188 ELRQ-QEEEYSINGN 201
           ELR  +E++ +I G+
Sbjct: 172 ELRDPREDDCAIPGD 186

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247191|ref|NP_001156195.1| GTP-binding protein YPTM1-like [Acyrthosiphon pisum] gi|239799251|dbj|BAH70556.1| ACYPI005808 [Acyrthosiphon pisum]

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/142 (69%), Positives = 128/142 (90%), Gaps = 2/142 (1%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           EC GE+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DRDSFEA HSWK+KVE+EC
Sbjct: 52  ECNGEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLAFSTTDRDSFEAIHSWKIKVEDEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           G+IPTV+VQNK+DL+++S V P+E D+L+R+LGC+L+ TSVK+D+NVN++FRYL T+CL 
Sbjct: 112 GKIPTVIVQNKVDLIERSQVDPQEVDILARSLGCKLICTSVKDDVNVNNVFRYLATRCLM 171

Query: 188 ELRQQEEEYSINGNGL-PPYTI 208
           E++++E+EY ++GNG+   YTI
Sbjct: 172 EIQKEEQEY-MSGNGIHQTYTI 192

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631098|gb|EHJ78793.1| putative rab23 [Danaus plexippus]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/125 (75%), Positives = 111/125 (88%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           +GEEVRLMLWDTAGQEEFDAITKAYYRGA ACV+ FST DRDSF A HSWK+KVENECGE
Sbjct: 54  DGEEVRLMLWDTAGQEEFDAITKAYYRGAHACVLAFSTTDRDSFLALHSWKLKVENECGE 113

Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
           IPT++VQNKIDL+DQ VV P+EA+L++RALGCRLMR SVKED+NV ++FR L ++CL++L
Sbjct: 114 IPTIIVQNKIDLMDQCVVGPDEAELVARALGCRLMRASVKEDVNVGAVFRALASRCLADL 173

Query: 190 RQQEE 194
           R   E
Sbjct: 174 RADSE 178

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212547|gb|EFN88270.1| Ras-related protein Rab-23 [Harpegnathos saltator]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 112/129 (86%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+VRLMLWDTAGQEEFDAIT AYYRGA ACV+ +S  DRDSF+A  SWK+KVENEC
Sbjct: 52  EVDGEDVRLMLWDTAGQEEFDAITAAYYRGAHACVLAYSATDRDSFDAIPSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTVLVQNKIDL+DQ V+ P+EA+ L RALGC+L+RTSVKEDI V S+FR+L ++CL 
Sbjct: 112 GEIPTVLVQNKIDLVDQCVIDPDEAERLGRALGCKLLRTSVKEDIGVMSVFRHLASRCLH 171

Query: 188 ELRQQEEEY 196
           E+R+ +++Y
Sbjct: 172 EMRRSDDDY 180

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167470|gb|EFN61043.1| Ras-related protein Rab-23 [Camponotus floridanus]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 91/129 (70%), Positives = 113/129 (87%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+VRLMLWDTAGQEEFDAIT AYYRGA ACV+ +S+ DRDSF+A  SWK+KVENEC
Sbjct: 52  EVDGEDVRLMLWDTAGQEEFDAITAAYYRGAHACVLAYSSTDRDSFDAIPSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTVLVQNKIDL++Q VV P+EA+ L RALGC+L+RTSVKEDI V S+FR+L ++CL 
Sbjct: 112 GEIPTVLVQNKIDLVEQCVVDPDEAERLGRALGCKLLRTSVKEDIGVMSVFRHLASRCLH 171

Query: 188 ELRQQEEEY 196
           E+R+ +++Y
Sbjct: 172 EMRRSDDDY 180

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158288058|ref|XP_309942.4| AGAP011565-PA [Anopheles gambiae str. PEST] gi|157019291|gb|EAA05694.4| AGAP011565-PA [Anopheles gambiae str. PEST]

 Score =  202 bits (513), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 92/125 (73%), Positives = 109/125 (87%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE++R+MLWDTAGQEEFDAITKAYYRGAQACV+TFST DR SFEA   WK KVENEC
Sbjct: 66  EIDGEDIRIMLWDTAGQEEFDAITKAYYRGAQACVLTFSTTDRASFEAIREWKRKVENEC 125

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            EIPTVLVQNKIDL+DQ+VV+ EEA+ L+ +LGCRL+RTSVKED+NV ++FRYL TKC  
Sbjct: 126 SEIPTVLVQNKIDLMDQAVVSFEEAEALAHSLGCRLIRTSVKEDVNVATVFRYLATKCHQ 185

Query: 188 ELRQQ 192
            ++QQ
Sbjct: 186 MMKQQ 190

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020425|gb|EGI60845.1| Ras-related protein Rab-23 [Acromyrmex echinatior]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/129 (69%), Positives = 111/129 (86%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+VRLMLWDTAGQEEFDAIT AYYRGA ACV+ +S  DRDSF+A  SWK+KVENEC
Sbjct: 52  EVDGEDVRLMLWDTAGQEEFDAITAAYYRGAHACVLAYSATDRDSFDAIPSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTVLVQNKIDL+DQSV+  +EA+ L R LGC+L+RTSVKEDI V S+FR+L ++CL 
Sbjct: 112 GEIPTVLVQNKIDLVDQSVIDADEAERLGRTLGCKLLRTSVKEDIGVMSVFRHLASRCLH 171

Query: 188 ELRQQEEEY 196
           E+R+ +++Y
Sbjct: 172 EMRRSDDDY 180

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860301|ref|XP_003705629.1| PREDICTED: ras-related protein Rab-23-like [Megachile rotundata]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/129 (68%), Positives = 112/129 (86%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+VRLMLWDTAGQEEFDAIT AYYRGA ACV+ +S  DRDSF+A  SWK+KVENEC
Sbjct: 52  EVDGEDVRLMLWDTAGQEEFDAITAAYYRGAHACVLAYSATDRDSFDAIPSWKLKVENEC 111

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           GEIPTVLVQNK+DL+DQ V+ P+EA+ L RALGC+L+RTSVKED+ V S+FR+L ++CL 
Sbjct: 112 GEIPTVLVQNKMDLVDQCVIDPDEAERLGRALGCKLLRTSVKEDVGVMSVFRHLASRCLH 171

Query: 188 ELRQQEEEY 196
           E+R+ +++Y
Sbjct: 172 EMRRCDDDY 180

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	208
FB|FBgn0037364	268	Rab23 "Rab23" [Drosophila mela	0.697	0.541	0.614	1.5e-44
ZFIN|ZDB-GENE-050522-328	237	rab23 "RAB23, member RAS oncog	0.600	0.527	0.704	1.2e-42
UNIPROTKB|Q9ULC3	237	RAB23 "Ras-related protein Rab	0.639	0.561	0.649	3.6e-41
UNIPROTKB|F1RZV2	237	RAB23 "Uncharacterized protein	0.639	0.561	0.641	5.9e-41
UNIPROTKB|E2QWS2	237	RAB23 "Uncharacterized protein	0.639	0.561	0.641	2e-40
UNIPROTKB|E1BAI0	237	RAB23 "Uncharacterized protein	0.639	0.561	0.634	4.2e-40
RGD|1306867	237	Rab23 "RAB23, member RAS oncog	0.625	0.548	0.648	4.2e-40
UNIPROTKB|F1NTT5	237	RAB23 "Uncharacterized protein	0.639	0.561	0.626	6.8e-40
MGI|MGI:99833	237	Rab23 "RAB23, member RAS oncog	0.639	0.561	0.634	1.1e-39
FB|FBgn0031090	201	Rab35 "Rab35" [Drosophila mela	0.759	0.786	0.347	7e-22

FB|FBgn0037364 Rab23 "Rab23" [Drosophila melanogaster (taxid:7227)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 91/148 (61%), Positives = 114/148 (77%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I E +GE+VR+MLWDTAGQEEFD ITKAYYRGAQA V+ FST DR SF+A   WK 
Sbjct:    75 LERQI-EIDGEDVRIMLWDTAGQEEFDCITKAYYRGAQASVLVFSTTDRASFDAIKDWKR 133

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KVENEC EIPTV+VQNKIDL++Q+VV  +E + L++ L CRL+RTSVKEDINV S+FRYL
Sbjct:   134 KVENECNEIPTVIVQNKIDLIEQAVVTADEVETLAKLLNCRLIRTSVKEDINVASVFRYL 193

Query:   182 TTKCLSELRQQEEEYSIN--GNGLPPYT 207
              TKC   + Q  ++ + N   +  PPY+
Sbjct:   194 ATKCHQLMTQSYDQVAGNQQNSSHPPYS 221

GO:0003924 "GTPase activity" evidence=ISS

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-050522-328 rab23 "RAB23, member RAS oncogene family" [Danio rerio (taxid:7955)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 88/125 (70%), Positives = 101/125 (80%)

Query:    71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEI 130
             GE+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SWK KVE E G+I
Sbjct:    55 GEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWKEKVEMEVGDI 114

Query:   131 PTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELR 190
             PTVLVQNKIDLLD +V+  EEA+ L++ L  R  RTSVKED+NVN +F+YL  K L  L+
Sbjct:   115 PTVLVQNKIDLLDDTVIKNEEAEGLAKRLKLRFYRTSVKEDLNVNEVFKYLADKYLQRLK 174

Query:   191 QQEEE 195
             QQ  E
Sbjct:   175 QQSAE 179

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9ULC3 RAB23 "Ras-related protein Rab-23" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 87/134 (64%), Positives = 104/134 (77%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPTVLVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NVN +F+YL
Sbjct:   106 KVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L +L+QQ  E
Sbjct:   166 AEKYLQKLKQQIAE 179

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0005776 "autophagic vacuole" evidence=IDA

GO:0000045 "autophagic vacuole assembly" evidence=IMP

GO:0006968 "cellular defense response" evidence=IMP

GO:0003924 "GTPase activity" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=IDA

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0097094 "craniofacial suture morphogenesis" evidence=IMP

GO:0045335 "phagocytic vesicle" evidence=IDA

UNIPROTKB|F1RZV2 RAB23 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 86/134 (64%), Positives = 104/134 (77%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVHDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G++PTVLVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NVN +F+YL
Sbjct:   106 KVVAEVGDVPTVLVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRTSVKEDLNVNEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L +L+QQ  E
Sbjct:   166 AEKYLQKLKQQIAE 179

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|E2QWS2 RAB23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 86/134 (64%), Positives = 103/134 (76%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPTVLVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV  +F+YL
Sbjct:   106 KVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRTSVKEDLNVTEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L +L+QQ  E
Sbjct:   166 AEKYLQKLKQQIAE 179

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E1BAI0 RAB23 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 85/134 (63%), Positives = 103/134 (76%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPT LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV+ +F+YL
Sbjct:   106 KVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRTSVKEDLNVSEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L +L+QQ  E
Sbjct:   166 AEKYLQKLKQQIAE 179

GO:0045861 "negative regulation of proteolysis" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

RGD|1306867 Rab23 "RAB23, member RAS oncogene family" [Rattus norvegicus (taxid:10116)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 85/131 (64%), Positives = 102/131 (77%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPT LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NVN +F+YL
Sbjct:   106 KVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVNEVFKYL 165

Query:   182 TTKCLSELRQQ 192
               K L +L+QQ
Sbjct:   166 AEKHLQKLKQQ 176

GO:0000045 "autophagic vacuole assembly" evidence=ISO

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006968 "cellular defense response" evidence=ISO

GO:0007165 "signal transduction" evidence=ISO

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007399 "nervous system development" evidence=ISO

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA;ISO

GO:0042733 "embryonic digit morphogenesis" evidence=IEA;ISO

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=IEA;ISO

GO:0097094 "craniofacial suture morphogenesis" evidence=ISO

UNIPROTKB|F1NTT5 RAB23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 84/134 (62%), Positives = 101/134 (75%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   EEVRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SF+A  +WK 
Sbjct:    47 LERQI-QVNDEEVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFKAIPTWKE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPTVLVQNKIDLLD S +  EEA+ L++ L  R  R SVKED+N+  +F+YL
Sbjct:   106 KVMTEVGDIPTVLVQNKIDLLDDSCIKNEEAEALAKKLKLRFYRASVKEDLNITEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L  L+QQ  E
Sbjct:   166 ADKYLQRLKQQTAE 179

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0008589 "regulation of smoothened signaling pathway" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0045861 "negative regulation of proteolysis" evidence=IEA

MGI|MGI:99833 Rab23 "RAB23, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 85/134 (63%), Positives = 103/134 (76%)

Query:    62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
             ++R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ 
Sbjct:    47 LERQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWRE 105

Query:   122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             KV  E G+IPT LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV+ +F+YL
Sbjct:   106 KVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL 165

Query:   182 TTKCLSELRQQEEE 195
               K L +L+QQ  E
Sbjct:   166 AEKHLQKLKQQITE 179

GO:0000045 "autophagic vacuole assembly" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005776 "autophagic vacuole" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006968 "cellular defense response" evidence=ISO

GO:0007165 "signal transduction" evidence=IMP

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0008589 "regulation of smoothened signaling pathway" evidence=IGI

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0021513 "spinal cord dorsal/ventral patterning" evidence=IGI;IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IMP

GO:0042992 "negative regulation of transcription factor import into nucleus" evidence=ISO

GO:0045335 "phagocytic vesicle" evidence=ISO

GO:0045861 "negative regulation of proteolysis" evidence=IMP

GO:0097094 "craniofacial suture morphogenesis" evidence=ISO

FB|FBgn0031090 Rab35 "Rab35" [Drosophila melanogaster (taxid:7227)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 57/164 (34%), Positives = 88/164 (53%)

Query:    34 GAQACVITFSTIDRDSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITK 92
             G  + +I FS    D+F  ++   + V  K RT+ + EG  V+L +WDTAGQE F  IT 
Sbjct:    20 GKSSLLIRFSD---DTFSGSYITTIGVDFKIRTV-DIEGMRVKLQIWDTAGQERFRTITS 75

Query:    93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA 152
              YYRG    ++ +   + +SF     W  +++N C  +  VLV NK D  D+ VV  E+A
Sbjct:    76 TYYRGTHGVIVVYDVTNGESFANVRRWLEEIQNNCDVVKKVLVGNKNDDPDRKVVITEDA 135

Query:   153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS-ELRQQEEE 195
                ++ +   L  TS K++INV ++F  +T + L  +LR    E
Sbjct:   136 QRFAKQMDIELFETSAKDNINVENMFLSITRQVLDHKLRTSPNE 179

GO:0003924 "GTPase activity" evidence=ISS

GO:0000910 "cytokinesis" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0031982 "vesicle" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54NU2	RAB1D_DICDI	No assigned EC number	0.3409	0.6298	0.6421	yes	N/A
P07560	SEC4_YEAST	No assigned EC number	0.3068	0.8076	0.7813	yes	N/A
O42819	SEC4_CANGA	No assigned EC number	0.3181	0.8076	0.7813	yes	N/A
P35288	RAB23_MOUSE	No assigned EC number	0.6776	0.5817	0.5105	yes	N/A
P17609	YPT2_SCHPO	No assigned EC number	0.3157	0.8028	0.835	yes	N/A
Q9FPJ4	RAD2B_ARATH	No assigned EC number	0.3270	0.7355	0.7574	yes	N/A
Q9ULC3	RAB23_HUMAN	No assigned EC number	0.6942	0.5817	0.5105	yes	N/A
Q9SEH3	RAD2C_ARATH	No assigned EC number	0.3270	0.7355	0.7574	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	208
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-61
pfam00071	162	pfam00071, Ras, Ras family	9e-39
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-37
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-35
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-28
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-27
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	8e-27
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-26
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	7e-25
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-24
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	9e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-24
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	5e-23
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	6e-23
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-22
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-22
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-22
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	8e-22
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	9e-22
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-20
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-19
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-19
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	4e-19
pfam00071	162	pfam00071, Ras, Ras family	7e-19
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-18
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-18
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-18
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-18
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-17
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-17
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-17
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	6e-17
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-16
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-16
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-16
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	3e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	4e-16
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-16
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	6e-16
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-15
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-15
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-15
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-15
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-15
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	6e-15
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-15
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-14
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-14
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-14
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-14
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-14
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	3e-14
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	5e-14
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-14
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-13
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-13
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-13
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	2e-13
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-13
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	4e-13
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-13
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	4e-13
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	4e-13
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	5e-13
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	6e-13
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-12
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-12
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-12
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	6e-12
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-11
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-11
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-11
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	4e-11
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	5e-11
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	7e-11
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-11
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-11
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-10
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-10
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	1e-10
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-10
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-10
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-10
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-10
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	5e-10
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	7e-10
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	8e-10
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	8e-10
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-10
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-09
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-09
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-09
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-09
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	6e-09
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-08
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-08
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-08
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-08
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	6e-08
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	6e-08
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	8e-08
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-07
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-07
pfam08477	116	pfam08477, Miro, Miro-like protein	6e-07
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-07
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-07
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-07
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	1e-06
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-06
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	4e-06
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	5e-06
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	6e-06
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	1e-05
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-05
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-05
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-05
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-05
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-05
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	4e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	8e-05
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-04
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	1e-04
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	2e-04
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	3e-04
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-04
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-04
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	4e-04
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	7e-04
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	0.001
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	0.001
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	0.002
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.002
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	0.003
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	0.004
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.004

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  188 bits (480), Expect = 1e-61
 Identities = 80/115 (69%), Positives = 92/115 (80%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEI 130
            E+VRLMLWDTAGQEEFDAITKAYYRGAQAC++ FST DR+SFEA  SWK KVE ECG+I
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDI 107

Query: 131 PTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
           P VLVQ KIDLLDQ+V+  EEA+ L++ L   L RTSVK+D NV  +F YL  KC
Sbjct: 108 PMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEKC 162

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  130 bits (330), Expect = 9e-39
 Identities = 52/125 (41%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
                E +G+ V+L +WDTAGQE F A+   YYRGAQ  ++ +    RDSFE    W  +
Sbjct: 37  YTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEE 96

Query: 123 VENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
           +     E +P VLV NK DL DQ VV+ EE + L++ LG   M TS K + NV   F  L
Sbjct: 97  ILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEEL 156

Query: 182 TTKCL 186
             + L
Sbjct: 157 AREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  126 bits (320), Expect = 3e-37
 Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           +G++V+L +WDTAGQE F +IT +YYRGA   ++ +   +R+SFE    W  +++     
Sbjct: 45  DGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPP 104

Query: 130 -IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
            IP +LV NK DL D+  V+ EEA   ++  G     TS K   NV+  F  L  
Sbjct: 105 NIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  122 bits (308), Expect = 2e-35
 Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +TI E +G+ V+L +WDTAGQE F +IT +YYRGA   ++ +   +R+SFE   +W  ++
Sbjct: 40  KTI-EVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKEL 98

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                  +  +LV NK DL +Q  V+ EEA+  +   G     TS K + NV   F  L 
Sbjct: 99  REYASPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158

Query: 183 TK 184
            +
Sbjct: 159 RE 160

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  104 bits (262), Expect = 1e-28
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 1/138 (0%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           + F   H    + S  +      G+ + L +WDTAGQE + A+   YYR A   ++ +  
Sbjct: 23  NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDI 82

Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D DSF+    W  +++   G  I  V+V NKIDL  Q VV+  EA+  ++++G +   T
Sbjct: 83  TDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFET 142

Query: 167 SVKEDINVNSIFRYLTTK 184
           S K    +  +F  L  +
Sbjct: 143 SAKTGKGIEELFLSLAKR 160

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  102 bits (256), Expect = 1e-27
 Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 2/121 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E +G++++L +WDTAGQE F  IT +YYRGA   ++ +   D  SFE   +W   +
Sbjct: 43  RTI-ELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNI 101

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    E +  +LV NK D+ ++ VV+ EE + L+R  G + + TS K +INV   F  L 
Sbjct: 102 DEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLA 161

Query: 183 T 183
            
Sbjct: 162 K 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  102 bits (255), Expect = 1e-27
 Identities = 46/116 (39%), Positives = 63/116 (54%), Gaps = 2/116 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E +G+ V+L +WDTAGQE F  IT +YYRGA   +I +   D++SF     W  ++
Sbjct: 42  RTI-ELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI 100

Query: 124 EN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +      +  +LV NK DL D+ VV   EA   +  LG   + TS K   NV   F
Sbjct: 101 DRYASENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  100 bits (250), Expect = 8e-27
 Identities = 43/53 (81%), Positives = 47/53 (88%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
            E+VRLMLWDTAGQEEFDAITKAYYRGAQAC++ FST DR+SFEA  SWK KV
Sbjct: 48  DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKV 100

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 99.5 bits (249), Expect = 1e-26
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R     +GE   L + DTAGQEEF A+   Y R     ++ +S   R+SFE   + + ++
Sbjct: 37  RKQIVVDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQI 96

Query: 124 EN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
               +  ++P VLV NK DL ++  V+ EE + L+   GC  + TS K +IN++ +F  L
Sbjct: 97  LRVKDKEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTL 156

Query: 182 TTK 184
             +
Sbjct: 157 VRE 159

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 97.4 bits (243), Expect = 2e-25
 Identities = 47/127 (37%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM----KVEN 125
               VRL LWD AGQE F  +T+ YY+GA   +I F      +FEA   WK     KV  
Sbjct: 46  PNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTL 105

Query: 126 ECGE-IPTVLVQNKIDLL-DQSVVAPEEADLLSRA---LGCRLMRTSVKEDINVNSIFRY 180
             GE IP +L+ NK DL  ++    PE+ D   +    +G     TS KE+IN+    R+
Sbjct: 106 PNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGW--FETSAKENINIEEAMRF 163

Query: 181 LTTKCLS 187
           L    L 
Sbjct: 164 LVKNILK 170

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 96.1 bits (239), Expect = 7e-25
 Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)

Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G  + ++ F+    ++F  ++   + V  K    E  GE V+L +WDTAGQE F  IT  
Sbjct: 18  GKSSLLLRFAD---NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITST 74

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
           YYRG    ++ +   + +SF     W  ++E  C ++  VLV NK D  ++ VV  E+A 
Sbjct: 75  YYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAY 134

Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
             +  +G  L  TS KE+INV  +F  +T   L
Sbjct: 135 KFAGQMGISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 92.3 bits (230), Expect = 7e-24
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG- 128
           + + VRL LWDTAGQE F ++  +Y R +   V+ +   +R SF+    W   V +E G 
Sbjct: 45  DDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN 104

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
           ++  VLV NK DL D+  V+ EE +  ++      + TS K   NV  +F+
Sbjct: 105 DVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 92.0 bits (229), Expect = 9e-24
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D+F+   S  + V  K      +G++V+L +WDTAGQE F  +T +YYRGAQ  ++ +  
Sbjct: 23  DTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDV 82

Query: 108 IDRDSFEAAHSWKMKVENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             RD+F+   +W  +++          +LV NKID  +   V  EE    +R      + 
Sbjct: 83  TRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKID-KENREVTREEGQKFARKHNMLFIE 141

Query: 166 TSVKEDINVNSIFRYLTTK 184
           TS K  I V   F  L  K
Sbjct: 142 TSAKTRIGVQQAFEELVEK 160

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 93.3 bits (232), Expect = 9e-24
 Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R I+   G  ++L LWDTAGQE F +IT++YYR +   ++ F   +R+SFE  H W  + 
Sbjct: 42  RLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEA 101

Query: 124 EN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
            +  +      +LV +K DL  Q  V  EEA+ L++ LG + + TS +   NV   F  L
Sbjct: 102 RSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161

Query: 182 T 182
           T
Sbjct: 162 T 162

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 89.9 bits (224), Expect = 5e-23
 Identities = 46/120 (38%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R   E +GE   L + DTAGQEEF A+   Y R  +  ++ +S  DR SFE    ++ ++
Sbjct: 38  RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQI 97

Query: 124 EN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
               +  ++P VLV NK DL  + VV+ EE   L+R  GC  + TS KE +NV+  F  L
Sbjct: 98  LRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDL 157

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 89.9 bits (224), Expect = 6e-23
 Identities = 47/120 (39%), Positives = 66/120 (55%), Gaps = 2/120 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK--M 121
           R   E +GE   L + DTAGQEEF A+   Y R  +  ++ +S  DR SFE    ++  +
Sbjct: 40  RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQI 99

Query: 122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
               +  ++P VLV NK DL ++ VV+ EE   L+R  GC  + TS KE INV+  F  L
Sbjct: 100 LRVKDRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDL 159

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 88.8 bits (221), Expect = 2e-22
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 1/111 (0%)

Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW-KMKVENEC 127
            +   V+  +WDTAGQE + ++   YYRGA A ++ +     +SFE A SW K   E+  
Sbjct: 45  LDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGP 104

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
             I   L  NK DL  +  V+ EEA   +   G   M TS K   NVN +F
Sbjct: 105 PNIVIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELF 155

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF +A    + +  K        + ++L +WDTAGQE +  IT AYYRGA   ++ +  
Sbjct: 24  DSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 83

Query: 108 IDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF A   W  +++    +   V LV NK D+ D+ VV+ E    L+  LG      
Sbjct: 84  TNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEA 143

Query: 167 SVKEDINVNSIFRYL 181
           S KE+INV  +F  L
Sbjct: 144 SAKENINVKQVFERL 158

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 87.1 bits (216), Expect = 7e-22
 Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 6/118 (5%)

Query: 66  IKECE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWK 120
            K+CE  G+  RL + DTAGQEEF A+ + Y R  +  ++ FS  DR SFE     H+  
Sbjct: 40  TKQCEIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQI 99

Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           ++V++   E P +LV NK DL  Q  V+ EE   L+R L    + TS K+ +NV+  F
Sbjct: 100 LRVKD-RDEFPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAF 156

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 87.2 bits (217), Expect = 8e-22
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI + +G+ ++  +WDTAGQE + AIT AYYRGA   ++ +    + +FE    W +K 
Sbjct: 43  RTI-QIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERW-LKE 100

Query: 124 --ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
             ++    I  +LV NK DL     V  EEA   +   G   + TS  +  NV   F+ L
Sbjct: 101 LRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160

Query: 182 TTK 184
            T+
Sbjct: 161 LTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 87.3 bits (217), Expect = 9e-22
 Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 10/132 (7%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG- 128
           +   V L +WDTAGQE F ++  A+YRGA  CV+ +   +  SFE+  SW+ +   +   
Sbjct: 45  DDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASP 104

Query: 129 ----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTT 183
                 P V++ NKIDL ++  V+ ++A    ++ G      TS KE INV+  F  +  
Sbjct: 105 RDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIAR 164

Query: 184 KCLSELRQQEEE 195
             L    +QE+E
Sbjct: 165 LAL----EQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 3/122 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ E +G+ V+L +WDTAGQE F  IT++YYR A   +I +    R SFE+   W  +V
Sbjct: 43  KTL-EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEV 101

Query: 124 ENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYL 181
           E      +  +L+ NK DL +Q  V  EEA  L+   G   ++ TS KE  NV   F  +
Sbjct: 102 EKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLM 161

Query: 182 TT 183
            T
Sbjct: 162 AT 163

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +GE+++L +WDTAGQE F +IT++YYR A A ++T+     +SF     W  ++E   
Sbjct: 50  EIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 109

Query: 128 G-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
             ++ T+LV NKIDL ++  V+ + A+  S A     + TS KE  NV  +F  L  +
Sbjct: 110 NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 80.2 bits (198), Expect = 4e-19
 Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 1/130 (0%)

Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           F+  H   + V     +   +G++++L +WDTAGQE F +IT++YYRGA   ++ +    
Sbjct: 29  FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 88

Query: 110 RDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
           R++F    SW            T+ L+ NK DL  +  V+ EE +  +R  G   M TS 
Sbjct: 89  RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSA 148

Query: 169 KEDINVNSIF 178
           K   NV   F
Sbjct: 149 KTASNVEEAF 158

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 80.8 bits (199), Expect = 4e-19
 Identities = 47/146 (32%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D+F  A    + V  K    E  G+++RL +WDTAGQE F++IT AYYR A+  ++ +  
Sbjct: 23  DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI 82

Query: 108 IDRDSFEAAHSW-KM--KVENECGEIPTVLVQNKIDL-LDQSVVAPEEADLLSRALGCRL 163
             +++F+    W KM  K  +E  E+  +LV NK+D   D+ +   +      +  G R 
Sbjct: 83  TKKETFDDLPKWMKMIDKYASEDAEL--LLVGNKLDCETDREITRQQGEKFAQQITGMRF 140

Query: 164 MRTSVKEDINVNSIFRYLTTKCLSEL 189
              S K++ NV+ IF  L    L ++
Sbjct: 141 CEASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 79.5 bits (197), Expect = 7e-19
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 6  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ V+L +WDTAGQE F A+   YYRGAQ  ++ +    RDSFE    W
Sbjct: 43 VDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKW 93

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 78.3 bits (193), Expect = 2e-18
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 4/114 (3%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF---EAAHSWKMKVE 124
           E +G++  L + DTAG E+F A+   Y +  Q  V+ +S   + +F   +      ++V+
Sbjct: 43  EVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVK 102

Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +   ++P +LV NK DL D+ VV  E+   L+R  GC  + TS K  INVN IF
Sbjct: 103 D-TEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIF 155

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 77.5 bits (192), Expect = 3e-18
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          +G++V+L +WDTAGQE F +IT +YYRGA   ++ +   +R+SFE    W
Sbjct: 45 DGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDKW 94

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 78.0 bits (192), Expect = 3e-18
 Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 7/117 (5%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-- 125
           E +G  V L +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK +     
Sbjct: 48  EVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 107

Query: 126 ---ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVNSIF 178
              E    P V++ NKID+ ++  V+ EEA    R  G      TS K+  NV + F
Sbjct: 108 DVKEPESFPFVILGNKIDIPERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 77.6 bits (192), Expect = 4e-18
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 13/121 (10%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           G++V L LWDTAGQEE+D +    Y      ++ FS     SFE     W  ++++ C  
Sbjct: 45  GKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPN 104

Query: 130 IPTVLVQNKIDLLD-----------QSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177
           +P +LV  KIDL D           Q  + PEE + L++ +G  + M  S      +  +
Sbjct: 105 VPIILVGTKIDLRDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEV 164

Query: 178 F 178
           F
Sbjct: 165 F 165

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 14/123 (11%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS     SFE     W  +V++ C 
Sbjct: 42  DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP 101

Query: 129 EIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSVKEDINVN 175
            +P +LV  K+DL +            Q  V  E+   L++ +G  + +  S      V 
Sbjct: 102 NVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVR 161

Query: 176 SIF 178
            +F
Sbjct: 162 EVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 74.9 bits (185), Expect = 4e-17
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          +G+ V+L +WDTAGQE F +IT +YYRGA   ++ +   +R+SFE   +W
Sbjct: 45 DGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENW 94

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 75.7 bits (186), Expect = 4e-17
 Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 1/110 (0%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECG 128
           +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W  ++ E    
Sbjct: 46  DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQS 105

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           ++  +L+ NK D+  + VV  E+ + L++  G   M TS K  +NV   F
Sbjct: 106 DVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 74.6 bits (184), Expect = 6e-17
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-- 128
           G+E  L + DTAGQ+E+  + + Y  G    ++ +S   R SFE       K+ +  G  
Sbjct: 46  GQEYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKE 105

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
            +P VLV NK DL  +  V+ EE   L+ + G   + +S KE+ NV   F  L
Sbjct: 106 SVPIVLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELL 158

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 5/123 (4%)

Query: 62  IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA--CVITFSTIDRDSFEAAHSW 119
           +   I+E +G+  +  L DTAGQE++DAI + YYR  ++   V     +  D  E     
Sbjct: 40  VTTVIEE-DGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQ 98

Query: 120 KMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
             ++ +     +P +LV NKIDL D   +    A L ++  G  ++  S +   N++S F
Sbjct: 99  TKEIIHHAESGVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Query: 179 RYL 181
           + +
Sbjct: 158 KIV 160

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 74.6 bits (183), Expect = 1e-16
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 1/130 (0%)

Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           F+  H   + V     +   + + ++L +WDTAGQE F +IT++YYRGA   ++ +    
Sbjct: 31  FQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 90

Query: 110 RDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
           R++F    SW            T+ L+ NK DL  +  V+ EE +  ++  G   M  S 
Sbjct: 91  RETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASA 150

Query: 169 KEDINVNSIF 178
           K   NV   F
Sbjct: 151 KTAQNVEEAF 160

Length = 210

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 74.6 bits (183), Expect = 2e-16
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 23/154 (14%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF-STIDRDSFEAAHSWKMKV 123
              E     ++L LWDTAGQEE+ ++   YYRGA   +I + ST+   S E    W  ++
Sbjct: 45  KTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEEL 104

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---------------RLMRTS 167
                + +P +LV NKIDL D+   + E  + L+R +                  L+ TS
Sbjct: 105 RELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164

Query: 168 VK--EDINVNSIFRYLTTKCLSELRQQEEEYSIN 199
            K     NVN +F+    + L +L ++ E+  + 
Sbjct: 165 AKSLTGPNVNELFK----ELLRKLLEEIEKLVLK 194

Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 55  SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           ++K +  I       + E   L + DTAGQ EF A+   Y R  +  +I +S  DR SF+
Sbjct: 38  AYKTQARI-------DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQ 90

Query: 115 AAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
            A  +K  +       +IP VLV NK+DL  Q  V  EE   L+R   C    TS     
Sbjct: 91  EASEFKELITRVRLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRF 150

Query: 173 NVNSIFRYLTTKCLSELRQQEEE 195
            ++  F  L    + E+R++E  
Sbjct: 151 YIDDAFHGL----VREIRRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 7/128 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFD-----AITKAYYRGAQACVITFSTIDRDSFE 114
                 +KE +  +V+L+L DT G +EF       + +   RGA   ++   + DR+S E
Sbjct: 33  RDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEE 92

Query: 115 AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE-ADLLSRALGCRLMRTSVKEDIN 173
            A    +        IP +LV NKIDLL++  V      + L++ LG  +   S K    
Sbjct: 93  DAK-LLILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEG 151

Query: 174 VNSIFRYL 181
           V+ +F  L
Sbjct: 152 VDELFEKL 159

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 73.2 bits (179), Expect = 4e-16
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF-EAAHSWKMKVENECGE 129
           G+ ++L +WDTAGQE F  +T +YYR AQ  ++ +    R++F   +  W  +VE     
Sbjct: 59  GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTN 118

Query: 130 IPTV--LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
              V  LV NK+D   +  V+ EE   L++  GC  +  S K   NV   F  L  K +
Sbjct: 119 QDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIM 177

Length = 211

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 6/118 (5%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVE--- 124
             +EVR+  +D +G  E+  +   +Y+  Q  ++ +   DR SFEA  SW  +MK E   
Sbjct: 45  RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGP 104

Query: 125 -NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
                 I  V+  NKIDL     V+ +E  L + + G +   TS      VN +F+ L
Sbjct: 105 HGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTL 162

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 71.9 bits (176), Expect = 1e-15
 Identities = 40/117 (34%), Positives = 60/117 (51%), Gaps = 2/117 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RT+ + EG+ V+  +WDTAGQE + AIT AYYRGA   ++ +    R +F+    W  ++
Sbjct: 52  RTL-QVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLREL 110

Query: 124 ENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
            +     I  ++  NK DL     VA E+   L+   G   + TS  E  NV   F+
Sbjct: 111 RDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167

Length = 216

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 70.5 bits (173), Expect = 2e-15
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 15/125 (12%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
           RT+ E +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF +  SW   
Sbjct: 42  RTV-EIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW--- 97

Query: 123 VENEC------GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---EDIN 173
           +E EC       E+P +LV NK DL +Q  V  + A   + A    L  TS K   E+ +
Sbjct: 98  IE-ECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDH 156

Query: 174 VNSIF 178
           V +IF
Sbjct: 157 VEAIF 161

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 70.6 bits (173), Expect = 2e-15
 Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 1/114 (0%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN 125
           I E  G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    SW     N
Sbjct: 43  IIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 102

Query: 126 ECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
                    L+ NK DL  Q  V  EEA   +   G   +  S K   NV   F
Sbjct: 103 LTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 39/141 (27%), Positives = 68/141 (48%)

Query: 42  FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101
            +++   S E+ + + M +  K T    +G  V+L LWDT+GQ  F  I ++Y RGAQ  
Sbjct: 23  LASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82

Query: 102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
           ++ +   +R SF+    W  +++     +P +LV N++ L  +  VA E+A   +   G 
Sbjct: 83  ILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM 142

Query: 162 RLMRTSVKEDINVNSIFRYLT 182
                S   + N+   F  L 
Sbjct: 143 TFFEVSPLCNFNITESFTELA 163

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 69.5 bits (170), Expect = 4e-15
 Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           EG+ + +  WDTAGQE F  +  +YY  A AC++ F    + +++    W  ++     E
Sbjct: 45  EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPE 104

Query: 130 IPTVLVQNKIDLLDQSVV 147
           IP ++V NKID LD SV 
Sbjct: 105 IPCIVVANKID-LDPSVT 121

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 68.9 bits (169), Expect = 6e-15
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
           ++R  +WDTAGQE+F  +   YY   Q  +I F    R +++   +W   +   C  IP 
Sbjct: 48  KIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 107

Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           VL  NK+D+ D+ V    +     R    +    S K + N    F +L  K
Sbjct: 108 VLCGNKVDIKDRKV--KPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 68.6 bits (168), Expect = 9e-15
 Identities = 41/116 (35%), Positives = 58/116 (50%), Gaps = 5/116 (4%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-E 129
           G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+SF A  +W          +
Sbjct: 46  GKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPD 105

Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
           I  +LV NK DL D   V   EA   ++  G   + TS     NV   F     KC
Sbjct: 106 IVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAF----LKC 157

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 68.7 bits (168), Expect = 1e-14
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 2/106 (1%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
              V L LWDTAGQE F ++T A++R A   ++ F      SF    +W  +++    C 
Sbjct: 60  AFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCE 119

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174
               VL+ NK DL DQ  V+  +A  L+   G     TS     NV
Sbjct: 120 NPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNV 165

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 1/136 (0%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           + F ++H   + V  K    E +G +VR+ +WDTAGQE +  ITK YYR AQ   + +  
Sbjct: 23  NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDI 82

Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
               S++    W   V+    E +  +L+ NK D   +  V  E+ + L++  G     T
Sbjct: 83  SSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFET 142

Query: 167 SVKEDINVNSIFRYLT 182
           S   + N+   F  LT
Sbjct: 143 SACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 1/112 (0%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           VRL LWDTAGQE F ++  +Y R + A ++ +   +R SFE    W   + NE G ++  
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVII 88

Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            LV NK DL D   V  EE    ++        TS K   N+  +F+ +  K
Sbjct: 89  ALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK 140

Length = 176

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 6/118 (5%)

Query: 70  EGEEVRLMLWDTAGQEEFDA--ITKAYYRGAQACVITFSTIDRDSFEAAHSWKM---KVE 124
           +GE+V L + DT GQ++ +     +   R A   V+ +S  DR SF+          +++
Sbjct: 43  DGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIK 102

Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN-VNSIFRYL 181
              GEIP +LV NK DLL    V+ EE   L+  LGC     S  E+   V ++F  L
Sbjct: 103 KRDGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHEL 160

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 4/114 (3%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
               V L +WDTAG E ++A+++ YYRGA+A ++ +   D  SFE A  W  +++N    
Sbjct: 46  GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEH 105

Query: 130 IPTVLVQNKIDLLDQSV----VAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
               L   K DL++Q      V   +    +  +  +   TS K   NV+ +F+
Sbjct: 106 CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 67.6 bits (165), Expect = 3e-14
 Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 6/130 (4%)

Query: 67  KECE-GEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK---M 121
           K+C   EE  L+ + DTAGQEE+ A+   Y R  Q  +  +S   R SFE   S++   +
Sbjct: 44  KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL 103

Query: 122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
           +V+++   +P +LV NK DL  +  V+  E   L+++ G   + TS K+ +NV+  F  L
Sbjct: 104 RVKDK-DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162

Query: 182 TTKCLSELRQ 191
             +    L++
Sbjct: 163 VREIRKYLKE 172

Length = 189

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 5/116 (4%)

Query: 67  KEC--EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
           K+   +GE   L + DTAGQEE+ A+   Y R  +  +  F+   R SFE  H+++ +++
Sbjct: 40  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK 99

Query: 125 --NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
              +  ++P VLV NK DL  ++ V+  +   L+++ G   + TS K    V   F
Sbjct: 100 RVKDSDDVPMVLVGNKCDLAART-VSTRQGQDLAKSYGIPYIETSAKTRQGVEEAF 154

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 45/137 (32%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +D F+  +   + V  +    E  G    L LWDTAGQE F  I   YYRGAQA +I F 
Sbjct: 22  KDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81

Query: 107 TIDRDSFEAAHSW---KMKVENECGEIPTVLVQNKIDLL--DQSVVAPEEADLLSRALGC 161
             D  S E    W    +K EN+   +   LV  K DL    Q  +  ++A  L+R +  
Sbjct: 82  LTDVASLEHTRQWLEDALK-ENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKA 140

Query: 162 RLMRTSVKEDINVNSIF 178
                S     NV   F
Sbjct: 141 EYWAVSALTGENVRDFF 157

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 27/76 (35%), Positives = 40/76 (52%)

Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
            +   +WDTAGQE+F  +   YY   Q  +I F    R +++   +W   +   C  IP 
Sbjct: 57  PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPI 116

Query: 133 VLVQNKIDLLDQSVVA 148
           VLV NK+D+ D+ V A
Sbjct: 117 VLVGNKVDVKDRQVKA 132

Length = 215

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 4   RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVS 61
            I  G  ++L LWDTAGQE F +IT++YYR +   ++ F   +R+SFE  H W  +  
Sbjct: 45  EIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEAR 102

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 65.2 bits (159), Expect = 2e-13
 Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           E +     L + DTAG E+F ++   Y +  Q  ++ +S +++ +F+     + ++    
Sbjct: 43  EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVK 102

Query: 128 G--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           G  ++P +LV NK+DL  +  V+  E   L+   GC  M TS K    VN +F
Sbjct: 103 GYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 65.6 bits (160), Expect = 2e-13
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 80  DTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV----ENECGEIPTVLV 135
           DTAGQEE+ A+   + R  +  ++ +S   R +FE    ++ ++    +    ++P ++V
Sbjct: 53  DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIV 112

Query: 136 QNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
            NK D + +  V+ EE   L+R LGC  +  S K ++NV   F       +  LRQQ +
Sbjct: 113 GNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAF----YTLVRALRQQRQ 167

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
           ++R   WDTAGQE+F  +   YY   Q  +I F    R +++   +W   +   C  IP 
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           VL  NK+D+ ++ V A  +     R    +    S K + N    F YL  K
Sbjct: 121 VLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170

Length = 219

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 23/51 (45%), Positives = 28/51 (54%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
              VRL LWD AGQE F  +T+ YY+GA   +I F      +FEA   WK
Sbjct: 46 PNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWK 96

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 64.9 bits (158), Expect = 4e-13
 Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 14/131 (10%)

Query: 66  IKECE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
           + +C   G+ V+L LWDTAGQEE++ +    Y  A   +I F+    DS E   + W  +
Sbjct: 39  VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEE 98

Query: 123 VENECGEIPTVLVQNKIDLLDQSV----------VAPEEADLLSRALGCR-LMRTSVKED 171
           V   C  +P +LV  K DL  ++V          V  ++A L++RA+G +  M  S    
Sbjct: 99  VRRYCPNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTG 158

Query: 172 INVNSIFRYLT 182
             V+ +F   T
Sbjct: 159 EGVDDVFEAAT 169

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 8/125 (6%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK---MKVENE 126
           +GEEV+L + DTAGQE++ AI   Y+R  +  ++ FS  D +SF A   ++   ++V+ +
Sbjct: 44  DGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKED 103

Query: 127 CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
              +P +LV NK DL D+  V+ EEA  L+   G   + TS K   NV+ +F  L    +
Sbjct: 104 -DNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDL----V 158

Query: 187 SELRQ 191
            E+RQ
Sbjct: 159 REIRQ 163

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%)

Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
            +R  +WDTAGQE+F  +   YY   Q  +I F    R +++   +W   +   C  IP 
Sbjct: 43  PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPI 102

Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
           VL  NK+D+ D+ V A  ++    R    +    S K + N    F +L  K + +
Sbjct: 103 VLCGNKVDVKDRKVKA--KSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 63.7 bits (155), Expect = 5e-13
 Identities = 40/121 (33%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 61  SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
           S ++ I E + ++  L + DTAG E+F A+   Y +  Q   + +S   + SF      +
Sbjct: 37  SYRKQI-EVDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLR 95

Query: 121 MKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSI 177
            ++    +  ++P +LV NK DL D+ VV+ EE   L+R  G C  + TS K  INV+ I
Sbjct: 96  EQILRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEI 155

Query: 178 F 178
           F
Sbjct: 156 F 156

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 64.3 bits (157), Expect = 6e-13
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMK 122
            T++   G+ + L LWDTAGQE++D +    Y      +I +S  +  S +     W  +
Sbjct: 42  TTLQVPNGKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPE 101

Query: 123 VENECGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGC-RLMRTSVK 169
           V + C   P VLV  K DL                 V PE+ + +++++G    +  S K
Sbjct: 102 VNHFCPGTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAK 161

Query: 170 EDINVNSIFRYLTTKCLSELRQQ 192
              NV+ +F       LS+  + 
Sbjct: 162 LMENVDEVFDAAINVALSKSGRA 184

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 62.2 bits (152), Expect = 2e-12
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          +G+ ++  +WDTAGQE + AIT AYYRGA   ++ +    + +FE    W
Sbjct: 48 DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERW 97

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E     W  ++ +   
Sbjct: 45  DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAP 104

Query: 129 EIPTVLVQNKIDLLD 143
            +P VLV  K+DL D
Sbjct: 105 GVPIVLVGTKLDLRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 61.4 bits (149), Expect = 5e-12
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
           +G  V L +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK
Sbjct: 50  DGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 100

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 60.9 bits (148), Expect = 6e-12
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)

Query: 1  MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          MI    +G++++L +WDTAGQE F +IT++YYRGA   ++ +    R++F    SW
Sbjct: 45 MIT--IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 98

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 38/119 (31%), Positives = 51/119 (42%), Gaps = 10/119 (8%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G  V L LWDTAGQEEFD +    Y      ++ FS  + DS E   S W  ++ + C 
Sbjct: 44  DGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCP 103

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLS---------RALGCRLMRTSVKEDINVNSIF 178
            +  VLV  K DL +           +S         R   CR +  S K +  VN  F
Sbjct: 104 GVKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAF 162

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 18/144 (12%)

Query: 48  DSFEAAHSWKMKVSIKRTIKECE-------GEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100
           D+FE  H        +RT++E         G +V + + DT+G   F A+ K   +   A
Sbjct: 22  DTFEPKH--------RRTVEELHSKEYEVAGVKVTIDILDTSGSYSFPAMRKLSIQNGDA 73

Query: 101 CVITFSTIDRDSFEAAHSWKMKVE--NECGEIPTVLVQNKIDLL-DQSVVAPEEADLLSR 157
             + +S  D +SFE     + ++    E   +P V+V NKID L ++ V A +    +  
Sbjct: 74  FALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAERQVEAADALSTVEL 133

Query: 158 ALGCRLMRTSVKEDINVNSIFRYL 181
                 +  S K++ NV  +F+ L
Sbjct: 134 DWNNGFVEASAKDNENVTEVFKEL 157

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R   E +G +  L + DTAG E+F A+ + Y +  Q  ++ +S     S       + +V
Sbjct: 39  RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQV 98

Query: 124 E--NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIF 178
               +   +P VLV NK DL D   V+ E+   LS+  G      TS ++  NV+ +F
Sbjct: 99  LRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVF 156

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
           +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W  +      I
Sbjct: 46  DGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTE------I 99

Query: 67  KECEGEEVRLMLWDTAGQEEFDAITK 92
            E    +V +ML         + + K
Sbjct: 100 LEYAQSDVVIMLLGNKADMSGERVVK 125

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK--M 121
           RT+   +GEE  L+++D   QE+   +  +  +   A VI +S  DR SFE A   +  +
Sbjct: 40  RTV-SVDGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQL 98

Query: 122 KVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
           +   +  +IP +LV NK DL+    V+ +E    +    C+ + TS     NV+ +F 
Sbjct: 99  RRARQAEDIPIILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFE 156

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 58.3 bits (141), Expect = 7e-11
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
            + V L ++D+AGQE F  + +  +       + +   +  SF     W  +++  +   
Sbjct: 50  SDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGL 109

Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
             P VLV NK DL D+  V   +A  L++A   +   TS KE +   + F
Sbjct: 110 HTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPF 159

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 57.9 bits (141), Expect = 8e-11
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 6  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +   V+  +WDTAGQE + ++   YYRGA A ++ +     +SFE A SW
Sbjct: 45 LDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSW 95

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 57.8 bits (140), Expect = 9e-11
 Identities = 22/49 (44%), Positives = 34/49 (69%)

Query: 8  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+SF A  +W
Sbjct: 46 GKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNW 94

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 57.6 bits (139), Expect = 1e-10
 Identities = 22/50 (44%), Positives = 34/50 (68%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +GE+++L +WDTAGQE F +IT++YYR A A ++T+     +SF     W
Sbjct: 52  KGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 101

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 24/63 (38%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIK 67
           G+++RL +WDTAGQE F++IT AYYR A+  ++ +    +++F+    W MK+  K   +
Sbjct: 46  GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW-MKMIDKYASE 104

Query: 68  ECE 70
           + E
Sbjct: 105 DAE 107

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 14/133 (10%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 43  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 102

Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE   ++  +G    +  S K    
Sbjct: 103 CPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTKEG 162

Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 163 VREVFEMATRAAL 175

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 14/123 (11%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G  V L LWDTAGQEE+D +    Y      +I FS     S+E   H W  +V + C 
Sbjct: 47  DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP 106

Query: 129 EIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDINVN 175
            +P +LV  K DL +            Q+ + P++   L++ +   + +  S      V 
Sbjct: 107 NVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVK 166

Query: 176 SIF 178
            +F
Sbjct: 167 EVF 169

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
           + + VRL LWDTAGQE F ++  +Y R +   V+ +   +R SF+    W     I   +
Sbjct: 45  DDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKW-----ID-DV 98

Query: 67  KECEGEEVRLML 78
           ++  G +V ++L
Sbjct: 99  RDERGNDVIIVL 110

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 29/66 (43%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 13  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE 72
           L LWDTAGQE F  I   YYRGAQA +I F   D  S E    W     ++  +KE +  
Sbjct: 51  LQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQW-----LEDALKENDPS 105

Query: 73  EVRLML 78
            V L L
Sbjct: 106 SVLLFL 111

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 57.0 bits (138), Expect = 2e-10
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 14/123 (11%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-AHSWKMKVENECG 128
           +G+ VRL L DTAGQ+EFD +    Y      ++ FS ++  SF+  +  W  ++     
Sbjct: 44  DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP 103

Query: 129 EIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALG-CRLMRTSVKEDINVN 175
           + P +LV  + DL                 V+   A  L+  +G C  +  S     N+ 
Sbjct: 104 KAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLK 163

Query: 176 SIF 178
            +F
Sbjct: 164 EVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           + + ++L +WDTAGQE F +IT++YYRGA   ++ +    R++F    SW
Sbjct: 51  DNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASW 100

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 55.2 bits (133), Expect = 7e-10
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 4  RICE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          RI E  G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    SW
Sbjct: 42 RIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 96

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 56.2 bits (135), Expect = 8e-10
 Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 5/86 (5%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF-EAAHSWKMKVSIKRTI 66
           G+ ++L +WDTAGQE F  +T +YYR AQ  ++ +    R++F   +  W  +V +  T 
Sbjct: 59  GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTN 118

Query: 67  KECEGEEVRLMLWDTAGQEEFDAITK 92
           ++C    V++++ +   +E    +++
Sbjct: 119 QDC----VKMLVGNKVDRESERDVSR 140

Length = 211

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 56.1 bits (135), Expect = 8e-10
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           EG+ V+  +WDTAGQE + AIT AYYRGA   ++ +    R +F+    W
Sbjct: 57  EGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRW 106

Length = 216

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            GE V+L +WDTAGQE F  IT  YYRG    ++ +   + +SF     W
Sbjct: 51  NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRW 100

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 54.8 bits (132), Expect = 1e-09
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 45  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 104

Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 105 NTPIILVGTKLDLRD 119

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
              V L +WDTAG E ++A+++ YYRGA+A ++ +   D  SFE A  W
Sbjct: 46 GERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFW 95

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 7   EGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
           +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF +  SW         
Sbjct: 47  DGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW--------- 97

Query: 66  IKECEGEEV 74
           I+ECE   +
Sbjct: 98  IEECEQHSL 106

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 52.9 bits (128), Expect = 5e-09
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIK 67
           GE   L + DTAGQEEF A+   Y R     ++ +S   R+SFE   +  ++  I R +K
Sbjct: 44  GETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKN--IREQILR-VK 100

Query: 68  ECE 70
           + E
Sbjct: 101 DKE 103

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSW 56
          +G+ V L LWDTAGQE++D +    Y      +I FS     SFE     W
Sbjct: 42 DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKW 92

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 3   NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF-STIDRDSFEAAHSWKMKVS 61
                   ++L LWDTAGQEE+ ++   YYRGA   +I + ST+   S E    W  ++ 
Sbjct: 46  TIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELR 105

Query: 62  IKR 64
              
Sbjct: 106 ELA 108

Length = 219

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 14/155 (9%)

Query: 11  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
           VRL LWDTAGQE F ++  +Y R + A ++ +   +R SFE    W   +  +R      
Sbjct: 29  VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER------ 82

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYY-RGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           G++V + L     + +   + K  Y  G Q      +     S +A H+ K+  +    +
Sbjct: 83  GKDVIIAL--VGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK 140

Query: 130 IPTVLVQNK-----IDLLDQSVVAPEEADLLSRAL 159
           +P +   N      +D+   +     + ++LS+ +
Sbjct: 141 LPNLDNSNSNDANVVDIQLTNNSNANDKNMLSKCM 175

Length = 176

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 3  NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 54
          N + +G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E   
Sbjct: 41 NVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVL 92

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 13/103 (12%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 46  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 105

Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG 160
            P +LV  +IDL D            Q  + PE  + L+R L 
Sbjct: 106 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 20/50 (40%), Positives = 30/50 (60%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G  V+L LWDT+GQ  F  I ++Y RGAQ  ++ +   +R SF+    W
Sbjct: 51  DGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRW 100

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 50.0 bits (119), Expect = 6e-08
 Identities = 21/54 (38%), Positives = 30/54 (55%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
          +G +VR+ +WDTAGQE +  ITK YYR AQ   + +      S++    W   V
Sbjct: 45 DGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDV 98

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 37/130 (28%), Positives = 52/130 (40%), Gaps = 5/130 (3%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT- 132
           V L +WD  GQ+    +   Y  GAQA  + +   +  SFE    W   V+    E  T 
Sbjct: 50  VTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETK 109

Query: 133 ---VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS-E 188
              VLV NK DL     V  E+    ++      +  S K    V   F+ +  + L  +
Sbjct: 110 PKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLGVK 169

Query: 189 LRQQEEEYSI 198
           L Q E E S 
Sbjct: 170 LSQAELEQSQ 179

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 8  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSW 56
          G++V L LWDTAGQEE+D +    Y      ++ FS     SFE     W
Sbjct: 45 GKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKW 94

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          EG+ + +  WDTAGQE F  +  +YY  A AC++ F    + +++    W
Sbjct: 45 EGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKW 94

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVSIKRT 65
           +G  V L LWDTAGQEEFD +    Y      ++ FS  + DS E   S W  ++     
Sbjct: 44  DGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIR---- 99

Query: 66  IKECEGEEVRLML 78
              C G  V+L+L
Sbjct: 100 -HHCPG--VKLVL 109

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 46.2 bits (110), Expect = 6e-07
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
              E +G+   L +WD  G+EE       + + A A ++ +   DR+S          + 
Sbjct: 39  DTLEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLP 98

Query: 125 N---ECGEIPTVLVQNKI 139
           N     G+IP +LV NK+
Sbjct: 99  NLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 47.1 bits (112), Expect = 7e-07
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIK 67
              V L LWDTAGQE F ++T A++R A   ++ F      SF    +W   +S  +   
Sbjct: 60  AFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNW---MSQLQAHA 116

Query: 68  ECEGEEVRL 76
            CE  ++ L
Sbjct: 117 YCENPDIVL 125

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            +EVR+  +D +G  E+  +   +Y+  Q  ++ +   DR SFEA  SW
Sbjct: 45 RNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSW 94

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 47.4 bits (113), Expect = 9e-07
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 10  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            +   +WDTAGQE+F  +   YY   Q  +I F    R +++   +W
Sbjct: 57  PICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNW 103

Length = 215

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-AHSW 56
          +G+ VRL L DTAGQ+EFD +    Y      ++ FS ++  SF+  +  W
Sbjct: 44 DGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKW 94

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 46.0 bits (110), Expect = 1e-06
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECGEIP 131
           V+  +WD  GQ++   + K YY      +    + DR+  E A +   K+  E E    P
Sbjct: 43  VKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAP 102

Query: 132 TVLVQNKIDLLDQSVVA 148
            +++ NK DL      +
Sbjct: 103 LLILANKQDLPGALTES 119

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 16/47 (34%), Positives = 26/47 (55%)

Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          ++R  +WDTAGQE+F  +   YY   Q  +I F    R +++   +W
Sbjct: 48 KIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNW 94

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E + + + L LWDT+G   +D +    Y  + A +I F     ++ ++    WK +V   
Sbjct: 43  EVDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREF 102

Query: 127 CGEIPTVLVQNKIDL---------LDQSVVAP---EEADLLSRALGCR--LMRTSVKEDI 172
           C   P +LV  K DL         L      P   E+   L++ +G    +  ++   + 
Sbjct: 103 CPNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

Query: 173 NVNSIFRYLTTKCL 186
           +V  +F   T  CL
Sbjct: 163 SVRDVFEMATLACL 176

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
           R +  C      L + DT G  +F A+ +       A ++ +S   + S E     +++ 
Sbjct: 39  RQVISCSKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELI 98

Query: 123 VE---NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
            E   N   +IP +LV NK D      V+  E   L+R   C  M TS K + NV  +F+
Sbjct: 99  CEIKGNNLEKIPIMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELFQ 158

Query: 180 YL 181
            L
Sbjct: 159 EL 160

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 45.4 bits (107), Expect = 5e-06
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E E + V L LWDT+G   +D +    Y  + A ++ F     + F++A   W+ ++ + 
Sbjct: 55  ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDY 114

Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
           C     +L+  K DL              Q+ ++ E+   +++ LG    L  ++   + 
Sbjct: 115 CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSAFTSEK 174

Query: 173 NVNSIFRYLTTKCLSEL 189
           +++SIFR  +  C+++L
Sbjct: 175 SIHSIFRTASLLCINKL 191

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 17/120 (14%)

Query: 72  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECGEI 130
           E V   + DT+ + +  A   A  R A    + +S     + E   + W   +     ++
Sbjct: 47  ERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKV 106

Query: 131 PTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT----------SVKEDINVNSIFRY 180
           P +LV NK DL D S  A  E ++L       +M            S K  INV+ +F Y
Sbjct: 107 PIILVGNKSDLRDGSSQAGLEEEMLP------IMNEFREIETCVECSAKTLINVSEVFYY 160

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVS 61
           +G  V L LWDTAGQEE+D +    Y      +I FS     S+E   H W  +V 
Sbjct: 47  DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVC 102

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           G++  L L+DTAGQE++D +    Y      +I FS ++  SF+     W  +++     
Sbjct: 45  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 104

Query: 130 IPTVLVQNKIDLLD 143
           +P +L+  +IDL D
Sbjct: 105 VPYLLIGTQIDLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 8   GEEVRLMLWDTAGQEEFDAITKAYYRGAQA--CVITFSTIDRDSFEAAHSWKMKVSIKRT 65
           G+  +  L DTAGQE++DAI + YYR  ++   V     +  D  E       ++     
Sbjct: 48  GKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEI----- 102

Query: 66  IKECEGEEVRLMLW 79
           I   E   V ++L 
Sbjct: 103 IHHAES-GVPIILV 115

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +R  +WDTAGQE+F  +   YY   Q  +I F    R +++   +W
Sbjct: 43 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNW 89

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 38/152 (25%), Positives = 60/152 (39%), Gaps = 34/152 (22%)

Query: 78  LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQ 136
           +WDTAG+E+F  +   Y RGA A ++T+   +  S E      + + +   E     +V 
Sbjct: 48  IWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVG 107

Query: 137 NKIDLLDQSVVAPEEADLLSR---------------ALGCRLMR---------------- 165
           NK+DL ++  +A +E D   R               A   R+ +                
Sbjct: 108 NKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMC 167

Query: 166 --TSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
             TS K   NV+ +F YL    L  +  Q  E
Sbjct: 168 FETSAKTGYNVDELFEYLFNLVLPLILAQRAE 199

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 11/124 (8%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS---------WKM 121
           GE  +L + DT+G   F A+ +         ++ FS  +R+SFE               +
Sbjct: 45  GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCL 104

Query: 122 KVE-NECGEIPTVLVQNKIDL-LDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
           K +  E  +IP V+  NK D    + V   E   L+     C     S K++ N++ +FR
Sbjct: 105 KNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFR 164

Query: 180 YLTT 183
            L +
Sbjct: 165 ALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 9  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
          E   L + DTAGQ EF A+   Y R  +  +I +S  DR SF+ A  +K
Sbjct: 48 EPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFK 96

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 16/47 (34%), Positives = 25/47 (53%)

Query: 10  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           ++R   WDTAGQE+F  +   YY   Q  +I F    R +++   +W
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW 107

Length = 219

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 61  SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-- 118
           +I   ++  E + ++  +WD  G+ +   + K YY   QA V    +  RD    AHS  
Sbjct: 30  TIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSEL 89

Query: 119 WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLS 156
            K+  E E  +   ++  NK D +  ++   E  +LLS
Sbjct: 90  AKLLTEKELRDALLLIFANKQD-VAGALSVEEMTELLS 126

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 26/120 (21%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDA-----ITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            I   E +++RL +WD  GQE + A     +T    R     V    T D  S      W
Sbjct: 42  KIPAPERKKIRLNVWDFGGQEIYHATHQFFLTS---RSLYLLVFDLRTGDEVS--RVPYW 96

Query: 120 KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--RLMRTSVKEDINVNSI 177
             +++   G  P +LV   ID  +       +  L  +       +   S K    +  +
Sbjct: 97  LRQIKAFGGVSPVILVGTHID--ESCDEDILKKALNKKFPAIINDIHFVSCKNGKGIAEL 154

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--CGEIP 131
           V + +WD  GQ  F ++ + Y RG  A V      DR+  E A +    +  +     IP
Sbjct: 44  VTIKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIP 103

Query: 132 TVLVQNKIDLLDQSVVAP--EEADLLS---RALGCRLMRTSVKEDINVNSIFRYLT 182
            +++ NK DL     V    E+ +L S   R + C     S KE  N++ +  +L 
Sbjct: 104 LLVLGNKNDLPGALSVDELIEQMNLKSITDREVSC--YSISAKEKTNIDIVLDWLI 157

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 8  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
          G+ + L LWDTAGQE++D +    Y      +I +S  +  S +
Sbjct: 49 GKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLD 92

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 3   NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVS 61
           N + +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V 
Sbjct: 41  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR 100

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA 53
          +G+ V+L LWDTAGQEE++ +    Y  A   +I F+    DS E  
Sbjct: 45 DGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENV 91

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           E   I  V+V NK DL+D   +           LG  ++  S K    ++ +   L  K
Sbjct: 30  EASGIEPVIVLNKADLVDDEELEELLEIY--EKLGYPVLAVSAKTGEGLDELRELLKGK 86

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 7  EGEEVRLMLWDTAGQEEFD-----AITKAYYRGAQACVITFSTIDRDSFEAAH 54
          +  +V+L+L DT G +EF       + +   RGA   ++   + DR+S E A 
Sbjct: 43 DKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK 95

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
          +G++V L LWDTAGQE++D +    Y      ++ FS    DS E
Sbjct: 45 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 89

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%)

Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVENECG 128
           G E+   +WD  GQ EF  +     + A A +  F    + +  +   W  + +  N+  
Sbjct: 46  GTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA 105

Query: 129 EIPTVLVQNKIDLL------DQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            IP +LV  K DL       +Q  +  ++A   ++A+   L+  S    INV  IF+++ 
Sbjct: 106 -IP-ILVGTKYDLFADLPPEEQEEIT-KQARKYAKAMKAPLIFCSTSHSINVQKIFKFVL 162

Query: 183 TK 184
            K
Sbjct: 163 AK 164

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 9   EEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
           EE  L+ + DTAGQEE+ A+   Y R  Q  +  +S   R SFE   S++ ++
Sbjct: 50  EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQI 102

Length = 189

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 7  EGEEVRLMLWDTAGQEEFDA--ITKAYYRGAQACVITFSTIDRDSFEAA 53
          +GE+V L + DT GQ++ +     +   R A   V+ +S  DR SF+  
Sbjct: 43 DGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVV 91

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E + + + L LWDT+G   +D +    Y  + A +I F     ++ ++    WK +++  
Sbjct: 47  EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF 106

Query: 127 CGEIPTVLVQNKIDL 141
           C     +LV  K DL
Sbjct: 107 CPNTKMLLVGCKSDL 121

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 2/72 (2%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF-EAAHSWKMKVENECGE-IP 131
            RLM WD  GQEE  ++   YY  +   +    + DR+ F E+  +++  + NE  E +P
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVP 110

Query: 132 TVLVQNKIDLLD 143
            +++ NK DL D
Sbjct: 111 LLVLANKQDLPD 122

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA 52
          +GEEV+L + DTAGQE++ AI   Y+R  +  ++ FS  D +SF A
Sbjct: 44 DGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTA 89

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMK 122
            ++    + V+  +WD  GQE    + + Y+    A +    + DRD  E A      + 
Sbjct: 49  NVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALL 108

Query: 123 VENECGEIPTVLVQNKIDLLD 143
            E E  + P +++ NK DL  
Sbjct: 109 NEEELADAPLLILANKQDLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 11  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
           V+  +WD  GQ++   + + YY G Q  +    + DRD  + A     +  + R I + E
Sbjct: 53  VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEA-----RQELHRIINDRE 107

Query: 71  GEEVRLMLW 79
             +  L+++
Sbjct: 108 MRDALLLVF 116

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
           E + ++  +WD  G+ +   + K YY   QA V    +  RD    AHS   K+  ++ +
Sbjct: 39  EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKEL 98

Query: 67  KE 68
           ++
Sbjct: 99  RD 100

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
           IK  + +  +L +WD  GQ +     + Y+      +    + DR  FE A     ++  
Sbjct: 51  IKNVQADGFKLNVWDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLE 110

Query: 124 ENECGEIPTVLVQNKIDLLD 143
           E +   +P ++  NK DLL 
Sbjct: 111 EEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	208
KOG0084|consensus	205		100.0
KOG0078|consensus	207		100.0
KOG0098|consensus	216		100.0
KOG0094|consensus	221		100.0
KOG0092|consensus	200		100.0
KOG0087|consensus	222		100.0
KOG0080|consensus	209		100.0
KOG0079|consensus	198		100.0
KOG0093|consensus	193		100.0
KOG0095|consensus	213		100.0
KOG0086|consensus	214		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394|consensus	210		100.0
KOG0081|consensus	219		100.0
KOG0091|consensus	213		100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0083|consensus	192		100.0
KOG0088|consensus	218		100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
KOG0097|consensus	215		100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0393|consensus	198		100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
KOG0395|consensus	196		100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
PLN03108	210	Rab family protein; Provisional	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
PTZ00099	176	rab6; Provisional	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.98
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.98
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.98
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.98
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.98
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.98
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.98
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
KOG4252|consensus	246		99.97
PLN03118	211	Rab family protein; Provisional	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.97
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.97
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.95
PLN00223	181	ADP-ribosylation factor; Provisional	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.95
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.95
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
PLN00023	334	GTP-binding protein; Provisional	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.93
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.93
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.93
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.92
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.92
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.92
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.91
KOG0096|consensus	216		99.91
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.91
COG1100	219	GTPase SAR1 and related small G proteins [General	99.9
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.9
KOG1673|consensus	205		99.9
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.9
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.89
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.89
KOG4423|consensus	229		99.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.88
KOG0073|consensus	185		99.87
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.87
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.87
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.87
KOG0070|consensus	181		99.86
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.85
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.85
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.83
KOG3883|consensus	198		99.83
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.83
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.83
PRK04213	201	GTP-binding protein; Provisional	99.82
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.82
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
KOG0075|consensus	186		99.8
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.8
PRK03003	472	GTP-binding protein Der; Reviewed	99.8
PRK12299	335	obgE GTPase CgtA; Reviewed	99.79
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.79
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.79
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.78
KOG0071|consensus	180		99.77
PRK15494	339	era GTPase Era; Provisional	99.77
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.76
PRK03003	472	GTP-binding protein Der; Reviewed	99.76
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.76
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.76
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.76
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.74
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.74
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.73
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.72
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.72
KOG0076|consensus	197		99.72
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.72
PRK11058	426	GTPase HflX; Provisional	99.72
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.71
cd00881	189	GTP_translation_factor GTP translation factor fami	99.71
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.71
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.7
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.7
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.7
KOG0072|consensus	182		99.7
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
KOG1707|consensus	625		99.69
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.69
PRK05433	600	GTP-binding protein LepA; Provisional	99.69
CHL00189	742	infB translation initiation factor 2; Provisional	99.68
KOG0074|consensus	185		99.68
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.67
PRK12297	424	obgE GTPase CgtA; Reviewed	99.67
PRK05306	787	infB translation initiation factor IF-2; Validated	99.65
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.65
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.65
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.64
PRK12296	500	obgE GTPase CgtA; Reviewed	99.63
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.62
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.62
PRK00089	292	era GTPase Era; Reviewed	99.61
PRK00093	435	GTP-binding protein Der; Reviewed	99.61
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.61
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.6
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.6
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.59
COG2229	187	Predicted GTPase [General function prediction only	99.58
PRK10218	607	GTP-binding protein; Provisional	99.58
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.57
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.57
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.57
PRK12298	390	obgE GTPase CgtA; Reviewed	99.56
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.56
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.54
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.53
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.51
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.51
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.49
PRK12317	425	elongation factor 1-alpha; Reviewed	99.49
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.48
PRK04004	586	translation initiation factor IF-2; Validated	99.47
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.46
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.45
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.45
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.4
COG1159	298	Era GTPase [General function prediction only]	99.37
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.34
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.32
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.31
COG1160	444	Predicted GTPases [General function prediction onl	99.3
PRK13351	687	elongation factor G; Reviewed	99.28
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.28
COG0486	454	ThdF Predicted GTPase [General function prediction	99.27
COG1160	444	Predicted GTPases [General function prediction onl	99.27
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.27
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.26
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.26
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.26
KOG0462|consensus	650		99.25
PRK12736	394	elongation factor Tu; Reviewed	99.24
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.24
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.24
KOG0077|consensus	193		99.23
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.21
PRK12735	396	elongation factor Tu; Reviewed	99.21
PRK14845	1049	translation initiation factor IF-2; Provisional	99.2
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.17
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.16
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.14
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.13
KOG1707|consensus	625		99.13
KOG0090|consensus	238		99.12
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.1
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.09
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.07
COG2262	411	HflX GTPases [General function prediction only]	99.03
PRK00098	298	GTPase RsgA; Reviewed	99.03
KOG0705|consensus	749		99.03
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.03
PLN00043	447	elongation factor 1-alpha; Provisional	99.02
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.01
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.01
PLN03126	478	Elongation factor Tu; Provisional	99.01
PRK12289	352	GTPase RsgA; Reviewed	99.01
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.0
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	98.99
CHL00071	409	tufA elongation factor Tu	98.98
PRK12740	668	elongation factor G; Reviewed	98.98
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.98
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.98
KOG1423|consensus	379		98.98
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.97
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.97
COG0218	200	Predicted GTPase [General function prediction only	98.96
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.95
PRK00049	396	elongation factor Tu; Reviewed	98.94
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.92
PRK12288	347	GTPase RsgA; Reviewed	98.91
PRK12739	691	elongation factor G; Reviewed	98.91
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.9
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.88
KOG3886|consensus	295		98.86
COG3596	296	Predicted GTPase [General function prediction only	98.85
PLN03127	447	Elongation factor Tu; Provisional	98.84
PRK09866	741	hypothetical protein; Provisional	98.83
PTZ00141	446	elongation factor 1- alpha; Provisional	98.83
PRK13768	253	GTPase; Provisional	98.83
KOG3905|consensus	473		98.82
PRK09602	396	translation-associated GTPase; Reviewed	98.81
KOG1191|consensus	531		98.77
KOG1145|consensus	683		98.75
KOG1489|consensus	366		98.69
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.67
COG1084	346	Predicted GTPase [General function prediction only	98.65
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.61
COG1163	365	DRG Predicted GTPase [General function prediction	98.58
PRK00007	693	elongation factor G; Reviewed	98.56
COG0536	369	Obg Predicted GTPase [General function prediction	98.55
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.54
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.51
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.5
PRK13796	365	GTPase YqeH; Provisional	98.47
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.45
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.44
KOG0094|consensus	221		98.44
KOG1490|consensus	620		98.42
PRK07560	731	elongation factor EF-2; Reviewed	98.41
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.39
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.38
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.37
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.36
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	98.35
KOG1144|consensus	1064		98.33
PTZ00416	836	elongation factor 2; Provisional	98.33
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.33
KOG4273|consensus	418		98.28
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.27
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.23
KOG0082|consensus	354		98.21
PRK01889	356	GTPase RsgA; Reviewed	98.21
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.19
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.19
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	98.15
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.14
KOG0084|consensus	205		98.11
PTZ00258	390	GTP-binding protein; Provisional	98.1
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.1
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.01
KOG0086|consensus	214		98.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	97.97
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.96
COG1162	301	Predicted GTPases [General function prediction onl	97.96
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	97.87
KOG0468|consensus	971		97.86
KOG0088|consensus	218		97.81
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	97.8
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.78
KOG0092|consensus	200		97.76
KOG0458|consensus	603		97.75
KOG0461|consensus	522		97.73
KOG0091|consensus	213		97.71
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.69
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	97.68
KOG3887|consensus	347		97.64
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	97.63
KOG0080|consensus	209		97.61
KOG0079|consensus	198		97.6
PRK09601	364	GTP-binding protein YchF; Reviewed	97.59
COG5019	373	CDC3 Septin family protein [Cell division and chro	97.56
KOG0394|consensus	210		97.55
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.52
KOG0087|consensus	222		97.46
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.44
KOG1532|consensus	366		97.44
KOG0093|consensus	193		97.43
KOG0098|consensus	216		97.36
KOG1547|consensus	336		97.36
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	97.34
KOG0095|consensus	213		97.29
KOG0078|consensus	207		97.26
KOG2655|consensus	366		97.23
KOG0099|consensus	379		97.09
KOG1486|consensus	364		97.0
KOG0081|consensus	219		96.98
KOG0097|consensus	215		96.92
cd03110	179	Fer4_NifH_child This protein family's function is	96.87
KOG0083|consensus	192		96.85
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	96.8
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	96.75
KOG0467|consensus	887		96.73
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.66
KOG0410|consensus	410		96.64
COG5258	527	GTPBP1 GTPase [General function prediction only]	96.64
KOG1143|consensus	591		96.64
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.62
KOG0466|consensus	466		96.62
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.59
COG0050	394	TufB GTPases - translation elongation factors [Tra	96.55
KOG0393|consensus	198		96.55
KOG0465|consensus	721		96.5
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	96.29
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	96.26
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	96.13
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	96.09
KOG0464|consensus	753		95.94
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	95.82
COG1161	322	Predicted GTPases [General function prediction onl	95.79
KOG4252|consensus	246		95.77
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.76
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	95.65
KOG0085|consensus	359		95.55
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	95.53
COG0012	372	Predicted GTPase, probable translation factor [Tra	95.52
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	95.4
KOG1424|consensus	562		95.32
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	94.99
KOG2486|consensus	320		94.92
PTZ00099	176	rab6; Provisional	94.8
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	94.73
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	94.63
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	94.56
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	94.54
KOG1954|consensus	532		94.49
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	94.38
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	94.31
KOG3859|consensus	406		94.3
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.26
KOG0469|consensus	842		94.23
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	94.11
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	93.85
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	93.71
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	93.59
COG1149	284	MinD superfamily P-loop ATPase containing an inser	93.39
KOG2484|consensus	435		93.3
KOG0460|consensus	449		93.23
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	93.02
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	92.86
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	92.84
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	92.69
PHA02518	211	ParA-like protein; Provisional	92.67
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	92.66
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	92.61
KOG0448|consensus	749		92.6
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	92.57
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	92.49
PLN00023	334	GTP-binding protein; Provisional	92.45
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	92.34
KOG1673|consensus	205		92.3
PRK09563	287	rbgA GTPase YlqF; Reviewed	92.22
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	92.17
cd02036	179	MinD Bacterial cell division requires the formatio	92.16
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	92.11
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	91.81
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	91.53
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	91.44
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	91.37
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	91.33
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	91.3
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	91.23
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	90.9
PRK13695	174	putative NTPase; Provisional	90.83
PTZ00369	189	Ras-like protein; Provisional	90.69
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	90.64
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	90.6
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	90.54
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	90.5
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	90.46
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	90.08
KOG4423|consensus	229		89.75
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	89.73
KOG2423|consensus	572		89.71
TIGR00064	272	ftsY signal recognition particle-docking protein F	89.61
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	89.57
KOG0459|consensus	501		89.51
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	89.33
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	89.19
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	89.0
PLN03110	216	Rab GTPase; Provisional	88.94
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	88.63
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	88.54
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	88.4
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	88.33
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	88.32
KOG3929|consensus	363		88.13
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	87.88
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	87.67
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	87.67
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	87.65
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	87.17
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	87.12
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	87.07
cd02117	212	NifH_like This family contains the NifH (iron prot	87.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	86.93
COG1100	219	GTPase SAR1 and related small G proteins [General	86.76
cd03111	106	CpaE_like This protein family consists of proteins	86.54
PRK10416	318	signal recognition particle-docking protein FtsY;	86.48
KOG0447|consensus	980		86.09
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	85.87
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	85.78
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	85.71
COG3523	1188	IcmF Type VI protein secretion system component Va	85.6
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	85.19
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	85.07
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	84.75
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	84.66
PRK14974	336	cell division protein FtsY; Provisional	84.62
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	84.52
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	84.46
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	84.36
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	84.27
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	84.19
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	84.1
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	84.09
PLN03118	211	Rab family protein; Provisional	83.76
CHL00175	281	minD septum-site determining protein; Validated	83.7
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	83.6
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	83.57
KOG0096|consensus	216		83.45
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	82.98
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	82.46
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	82.42
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	82.2
CHL00072	290	chlL photochlorophyllide reductase subunit L	82.1
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	82.08
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	82.02
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	81.91
PLN00223	181	ADP-ribosylation factor; Provisional	81.88
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	81.85
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	81.67

>KOG0084|consensus

Probab=100.00  E-value=1.8e-47  Score=278.96  Aligned_cols=175  Identities=29%  Similarity=0.488  Sum_probs=166.3

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .+.|+++|||+++|++||||  ++.||..+.|.+.|..|+|+|+..+.+.++|+.++++||||+||++|+++...||++|
T Consensus         3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a   82 (205)
T KOG0084|consen    3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA   82 (205)
T ss_pred             CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence            35689999999999999999  5799999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~~  176 (208)
                      |++|+|||+++.+||+++..|+.++.++.. +.|.++||||+|+.++++++.++++.++.+++++ ++|+|||++.||++
T Consensus        83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~  162 (205)
T KOG0084|consen   83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED  162 (205)
T ss_pred             CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence            999999999999999999999999999998 7899999999999999999999999999999998 99999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhh
Q psy2518         177 IFRYLTTKCLSELRQQEEE  195 (208)
Q Consensus       177 ~f~~i~~~~~~~~~~~~~~  195 (208)
                      .|..++..+..+.......
T Consensus       163 ~F~~la~~lk~~~~~~~~~  181 (205)
T KOG0084|consen  163 AFLTLAKELKQRKGLHVKW  181 (205)
T ss_pred             HHHHHHHHHHHhcccCCCC
Confidence            9999999998876654443

>KOG0078|consensus

Probab=100.00  E-value=5.2e-45  Score=269.69  Aligned_cols=170  Identities=29%  Similarity=0.545  Sum_probs=164.5

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      +.|++++|++++|+++|||  ++.+|..+.|...+..|+|+||..+++.++|..+.+++|||+||++|+.+.+.||++|+
T Consensus         7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~   86 (207)
T KOG0078|consen    7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAM   86 (207)
T ss_pred             CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcC
Confidence            4799999999999999999  57899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||+++..||+++..|+..+.++.+ ..|+++||||+|+.++|+|+.+.++++|.++|+.|+|+|||+|.||++.|
T Consensus        87 gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   87 GILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            99999999999999999999999999998 89999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy2518         179 RYLTTKCLSELRQ  191 (208)
Q Consensus       179 ~~i~~~~~~~~~~  191 (208)
                      ..+++.++.+...
T Consensus       167 ~~La~~i~~k~~~  179 (207)
T KOG0078|consen  167 LSLARDILQKLED  179 (207)
T ss_pred             HHHHHHHHhhcch
Confidence            9999999976544

>KOG0098|consensus

Probab=100.00  E-value=2.2e-44  Score=260.12  Aligned_cols=171  Identities=25%  Similarity=0.444  Sum_probs=164.0

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      |...+|++++|+.||||  +++||..+.|.+.+..|+|+++..+.+++++++++++||||+|++.|++..+.||++|.++
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            67899999999999999  6899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      |+|||+++++||+.+..|+.++.++. ++..++++|||+||...|.|+.+|+++||+++|+.++|+||++++||+|+|..
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n  162 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN  162 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence            99999999999999999999999996 49999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhh
Q psy2518         181 LTTKCLSELRQQEE  194 (208)
Q Consensus       181 i~~~~~~~~~~~~~  194 (208)
                      ....+....+....
T Consensus       163 ta~~Iy~~~q~g~~  176 (216)
T KOG0098|consen  163 TAKEIYRKIQDGVF  176 (216)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999988766544

>KOG0094|consensus

Probab=100.00  E-value=5.9e-43  Score=254.64  Aligned_cols=166  Identities=30%  Similarity=0.423  Sum_probs=157.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ..+.+|++++|+.+|||  ++.||+.+.|...|.+|||+||..+++.+.+.++.|++|||+|||+|+++.+.|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            34569999999999999  5799999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++|||+++..||++..+|++.+.+..+  +.-+++||||.||.++|+++.++++..|++++..|+|+||+.|.||.++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            999999999999999999999998887  477789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      .|+..++...
T Consensus       179 rIaa~l~~~~  188 (221)
T KOG0094|consen  179 RIAAALPGME  188 (221)
T ss_pred             HHHHhccCcc
Confidence            9988887653

>KOG0092|consensus

Probab=100.00  E-value=1.9e-42  Score=251.81  Aligned_cols=166  Identities=28%  Similarity=0.435  Sum_probs=158.1

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+|++++|++++||  +..||..+.|.+...||+|..|..+++.+++..++++||||+|+|+|.++.+.||++|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            579999999999999  579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||+++.+||..++.|+.++.+..+ ++-+.+||||+||.+.|+|..++++.+|...|..|||+|||+|.||+++|..|+
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence            9999999999999999999998887 677788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy2518         183 TKCLSELRQ  191 (208)
Q Consensus       183 ~~~~~~~~~  191 (208)
                      +.++....+
T Consensus       164 ~~lp~~~~~  172 (200)
T KOG0092|consen  164 EKLPCSDPQ  172 (200)
T ss_pred             HhccCcccc
Confidence            999876544

>KOG0087|consensus

Probab=100.00  E-value=5.3e-42  Score=252.75  Aligned_cols=173  Identities=28%  Similarity=0.463  Sum_probs=165.9

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .++|+++|||+++|+++|||  ++.||..+.|..+..+|+|+++..+.+.++++.++.+||||+||++|+.....||++|
T Consensus         8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA   87 (222)
T KOG0087|consen    8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA   87 (222)
T ss_pred             ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence            46899999999999999999  6889999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      .++++|||++.+.+|+++..|+.++..+.+ ++++++||||+||.+.|.|+.++++.+|+..+..++|+||.++.||++.
T Consensus        88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~a  167 (222)
T KOG0087|consen   88 VGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKA  167 (222)
T ss_pred             ceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHH
Confidence            999999999999999999999999999997 9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy2518         178 FRYLTTKCLSELRQQE  193 (208)
Q Consensus       178 f~~i~~~~~~~~~~~~  193 (208)
                      |..++..+.....++.
T Consensus       168 F~~~l~~I~~~vs~k~  183 (222)
T KOG0087|consen  168 FERVLTEIYKIVSKKQ  183 (222)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988765543

>KOG0080|consensus

Probab=100.00  E-value=2.3e-42  Score=244.00  Aligned_cols=170  Identities=28%  Similarity=0.467  Sum_probs=161.7

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      +.|..++||+++|++|+||  ++++|..+.|++..+.|+|+||..+.+.++|..+++-||||+|||+|+.+.+.||++|.
T Consensus         6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq   85 (209)
T KOG0080|consen    6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ   85 (209)
T ss_pred             cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence            5688899999999999999  68999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++|+|||++.+++|.++..|+.++..++.  ++-.++||||.|.+.+|.|+.+++..+|+++++-|+|||||+..||+..
T Consensus        86 GiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~  165 (209)
T KOG0080|consen   86 GIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCC  165 (209)
T ss_pred             eeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHH
Confidence            99999999999999999999999998887  6777999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy2518         178 FRYLTTKCLSELRQ  191 (208)
Q Consensus       178 f~~i~~~~~~~~~~  191 (208)
                      |++++.++++.+.-
T Consensus       166 FeelveKIi~tp~l  179 (209)
T KOG0080|consen  166 FEELVEKIIETPSL  179 (209)
T ss_pred             HHHHHHHHhcCcch
Confidence            99999999876543

>KOG0079|consensus

Probab=100.00  E-value=1.6e-42  Score=241.69  Aligned_cols=168  Identities=30%  Similarity=0.558  Sum_probs=161.9

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ..|++++|.+++|++|+||  ++.+|-.+.|...|..|+|+|+..+++.++|..++++||||+|+|+|+.+...||++.+
T Consensus         3 r~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth   82 (198)
T KOG0079|consen    3 RDYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH   82 (198)
T ss_pred             ccHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence            3588999999999999999  57888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++++|||+++.+||.++++|++++.+.++..|-++||||.|..+.+.|..++++.+|..+|+++||+|||++.|++..|.
T Consensus        83 gv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~  162 (198)
T KOG0079|consen   83 GVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH  162 (198)
T ss_pred             eEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      -|.++++...
T Consensus       163 cit~qvl~~k  172 (198)
T KOG0079|consen  163 CITKQVLQAK  172 (198)
T ss_pred             HHHHHHHHHH
Confidence            9999887665

>KOG0093|consensus

Probab=100.00  E-value=2.7e-41  Score=235.20  Aligned_cols=170  Identities=28%  Similarity=0.473  Sum_probs=162.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .|+.++|+.++|++++||  ++.++..++|...+..|+|+++..|++--..+.++++||||+|+|+|+.+...+|++|++
T Consensus        17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg   96 (193)
T KOG0093|consen   17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG   96 (193)
T ss_pred             cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence            589999999999999999  578899999999999999999999988778899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +|+|||++|.+||+.+..|..+++.++- ++|+|++|||||+.++|.++.+.++.++.++|+.|||+|||.+.||+++|+
T Consensus        97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe  176 (193)
T KOG0093|consen   97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE  176 (193)
T ss_pred             EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence            9999999999999999999999999887 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy2518         180 YLTTKCLSELRQQ  192 (208)
Q Consensus       180 ~i~~~~~~~~~~~  192 (208)
                      .++..+++++.+.
T Consensus       177 ~lv~~Ic~kmses  189 (193)
T KOG0093|consen  177 RLVDIICDKMSES  189 (193)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999877654

>KOG0095|consensus

Probab=100.00  E-value=5.2e-40  Score=229.59  Aligned_cols=173  Identities=29%  Similarity=0.472  Sum_probs=163.2

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      +|+|..+|||+++|..|+||  +.++|.++-|++-...|+|++|..+++.++|++++++||||+|+++|+++...||+.|
T Consensus         1 medykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa   80 (213)
T KOG0095|consen    1 MEDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA   80 (213)
T ss_pred             CcccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence            57899999999999999999  5689999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +++++|||++-..||+.+.+|+.++.++.. ..-.|+||||.|+.+.|+++...++++++...+-|.|+||++..||+.+
T Consensus        81 halilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l  160 (213)
T KOG0095|consen   81 HALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL  160 (213)
T ss_pred             ceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence            999999999999999999999999999988 5667999999999999999999999999998889999999999999999


Q ss_pred             HHHHHHHHHHHhhhhh
Q psy2518         178 FRYLTTKCLSELRQQE  193 (208)
Q Consensus       178 f~~i~~~~~~~~~~~~  193 (208)
                      |..++-.+....+...
T Consensus       161 f~~~a~rli~~ar~~d  176 (213)
T KOG0095|consen  161 FLDLACRLISEARQND  176 (213)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999998887765543

>KOG0086|consensus

Probab=100.00  E-value=2.9e-40  Score=231.68  Aligned_cols=174  Identities=27%  Similarity=0.408  Sum_probs=165.0

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      -+|.|++++|++++|++|.||  ++.+|..++|.+....|+|++|..+.+.+.++.++++||||+||++|++..+.||++
T Consensus         2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG   81 (214)
T KOG0086|consen    2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG   81 (214)
T ss_pred             cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence            368899999999999999999  578899999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |.+.++|||+++++||+.+..|+.......+ ++-++++|||.||.++|+|+..++-.+|.+..+-+.|+||++|+||+|
T Consensus        82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE  161 (214)
T KOG0086|consen   82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE  161 (214)
T ss_pred             ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence            9999999999999999999999999988877 888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhh
Q psy2518         177 IFRYLTTKCLSELRQQE  193 (208)
Q Consensus       177 ~f~~i~~~~~~~~~~~~  193 (208)
                      .|-..++.++.+.+..+
T Consensus       162 aFl~c~~tIl~kIE~GE  178 (214)
T KOG0086|consen  162 AFLKCARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99999999998765443

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.5e-39  Score=243.70  Aligned_cols=168  Identities=26%  Similarity=0.429  Sum_probs=157.3

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .|...+||+++|+.++||  ++.++..+.|.+++.+|++.++..+.+.+++..+.+++|||+|+++|..++..+++++|+
T Consensus         2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~   81 (189)
T cd04121           2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG   81 (189)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            367789999999999999  578888899999999999999988889999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +++|||++++.||+++..|+.++.+..++.|++|||||+||.+.+.++.++++.+++..+++|+||||++|.||+++|++
T Consensus        82 illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          82 IILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999999887779999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy2518         181 LTTKCLSELR  190 (208)
Q Consensus       181 i~~~~~~~~~  190 (208)
                      +++.+..+..
T Consensus       162 l~~~i~~~~~  171 (189)
T cd04121         162 LARIVLMRHG  171 (189)
T ss_pred             HHHHHHHhcC
Confidence            9998876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394|consensus

Probab=100.00  E-value=5.1e-40  Score=237.10  Aligned_cols=166  Identities=25%  Similarity=0.430  Sum_probs=155.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|++|+||  +.+++..+.|...|..|||.||..|.+.+++..+.++||||+|+++|.++.-.+|++||+++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            5689999999999999  57899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCC--CCCCCHHHHHHHHHHhC-CeEEEEecCCCCCH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLD--QSVVAPEEADLLSRALG-CRLMRTSVKEDINV  174 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~--~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i  174 (208)
                      +|||++++.||+++..|..++.....     ..|+||+|||.|+.+  +|+|+.+.+++||+..| ++|||+|||.+.||
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            99999999999999999999877664     689999999999965  38999999999999986 59999999999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy2518         175 NSIFRYLTTKCLSELR  190 (208)
Q Consensus       175 ~~~f~~i~~~~~~~~~  190 (208)
                      .+.|..+++.++....
T Consensus       167 ~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  167 DEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999999887654

>KOG0081|consensus

Probab=100.00  E-value=4.7e-39  Score=226.91  Aligned_cols=177  Identities=25%  Similarity=0.386  Sum_probs=163.4

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC---------CeEEEEEEEeCCChhhhc
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE---------GEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~---------~~~~~l~i~Dt~g~~~~~   88 (208)
                      |..+|++++|.+.+|+||+||  ++.++..+.|......|+|+||..|.+-++         +..+.+++|||+|+|+|+
T Consensus         2 ~~GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFR   81 (219)
T KOG0081|consen    2 GDGDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFR   81 (219)
T ss_pred             CCccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHH
Confidence            567899999999999999999  578899999999999999999999988773         367999999999999999


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      ++...++++|-+++++||+++..||-++..|+.++..+.-  ++-++++|||+||++.|+|+++++.++|.++++||||+
T Consensus        82 SLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfET  161 (219)
T KOG0081|consen   82 SLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFET  161 (219)
T ss_pred             HHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeee
Confidence            9999999999999999999999999999999999877654  88899999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhhhhhhh
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSELRQQEEEY  196 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~  196 (208)
                      ||-+|.||++..+.++..+.++.++-..++
T Consensus       162 SA~tg~Nv~kave~LldlvM~Rie~~v~~s  191 (219)
T KOG0081|consen  162 SACTGTNVEKAVELLLDLVMKRIEQCVEKS  191 (219)
T ss_pred             ccccCcCHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999988876655443

>KOG0091|consensus

Probab=100.00  E-value=3.5e-39  Score=228.47  Aligned_cols=169  Identities=28%  Similarity=0.437  Sum_probs=156.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      |-+.++.+++|++.+||  ++..|..++|.+-.+||+|+|++.+.+.+ +|..+++++|||+||++|+++.+.||+++-+
T Consensus         5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg   84 (213)
T KOG0091|consen    5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG   84 (213)
T ss_pred             eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence            56788999999999999  56778899999999999999999998888 6899999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +++|||++|++||+.+..|+.+...+..   .+-+.+||+|+||..+|+|+.++++.+|+.+|+.|+|+||++|.||++.
T Consensus        85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA  164 (213)
T KOG0091|consen   85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA  164 (213)
T ss_pred             eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence            9999999999999999999988776654   4556889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy2518         178 FRYLTTKCLSELRQQ  192 (208)
Q Consensus       178 f~~i~~~~~~~~~~~  192 (208)
                      |..+.+.++....+.
T Consensus       165 F~mlaqeIf~~i~qG  179 (213)
T KOG0091|consen  165 FDMLAQEIFQAIQQG  179 (213)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999887663

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5.3e-38  Score=239.42  Aligned_cols=162  Identities=26%  Similarity=0.498  Sum_probs=150.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +.|+++|++|+||  ++.++..+.|.+.|.+|+|.++..+.+.+++..+.++||||+|+++|+.+++.++++||++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            3689999999999  47888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |+++++||+++..|+..+.+... +.|+++||||+|+.+.+.++.+++++++++. ++.|+||||++|.||+++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998877654 7999999999999888899999999999885 789999999999999999999999


Q ss_pred             HHHHHh
Q psy2518         184 KCLSEL  189 (208)
Q Consensus       184 ~~~~~~  189 (208)
                      .+.+..
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            887653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0083|consensus

Probab=100.00  E-value=2.9e-38  Score=217.00  Aligned_cols=158  Identities=25%  Similarity=0.453  Sum_probs=149.3

Q ss_pred             EEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518          31 YYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST  107 (208)
Q Consensus        31 ~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~  107 (208)
                      +++|+|++||  ++.||..+.|.. +..+|+|+|+..+.+..++.+++++||||+||++|++....||++||+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            3689999999  578888888875 5789999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       108 ~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .++.||++++.|+.++..+.. ...++++|||+|+.++|.|+.++++.+++.++++|.|+|||+|.||+-.|-.+++.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            999999999999999998887 7888999999999999999999999999999999999999999999999999999886


Q ss_pred             HH
Q psy2518         187 SE  188 (208)
Q Consensus       187 ~~  188 (208)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            54

>KOG0088|consensus

Probab=100.00  E-value=7.8e-39  Score=225.66  Aligned_cols=169  Identities=28%  Similarity=0.493  Sum_probs=160.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...||++++|..++||  +.+|++.+.|+..+-+|+...|..+.+.+++....+.||||+|+++|..+.+.||+++++++
T Consensus        11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal   90 (218)
T KOG0088|consen   11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL   90 (218)
T ss_pred             ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence            5689999999999999  46899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      +|||++|++||+.++.|..++.+..+ .+.+++||||.||+++|+|+.++++++|+.-|..|+++||+++.||.++|+.+
T Consensus        91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~L  170 (218)
T KOG0088|consen   91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESL  170 (218)
T ss_pred             EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHH
Confidence            99999999999999999999998887 78899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhh
Q psy2518         182 TTKCLSELRQQE  193 (208)
Q Consensus       182 ~~~~~~~~~~~~  193 (208)
                      ...+++.....+
T Consensus       171 t~~MiE~~s~~q  182 (218)
T KOG0088|consen  171 TAKMIEHSSQRQ  182 (218)
T ss_pred             HHHHHHHhhhcc
Confidence            999887664433

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=1.5e-37  Score=233.65  Aligned_cols=161  Identities=22%  Similarity=0.388  Sum_probs=147.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|++++||  ++.++..+.|.+.|.||++.++ .+.+.+++..+.++||||+|+++|..+++.+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            4578999999999999  5788889999999999998554 577889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.||+++ ..|+..+.+..++.|+++||||+||.+            ++.++.++++++|+++++ +|+||||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997 899999988888899999999999964            356999999999999996 9999999


Q ss_pred             CCCCC-HHHHHHHHHHHHH
Q psy2518         169 KEDIN-VNSIFRYLTTKCL  186 (208)
Q Consensus       169 ~~~~~-i~~~f~~i~~~~~  186 (208)
                      ++|.| |+++|..+++.++
T Consensus       162 k~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         162 LQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            99998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.3e-37  Score=232.63  Aligned_cols=158  Identities=27%  Similarity=0.434  Sum_probs=145.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|+.++||  ++.++..+.|.++|.||++..+ .+.+.+++..++++||||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            7999999999999  5788999999999999998654 567788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCC----------CCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518         106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQS----------VVAPEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus       106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      |+++++||+++ ..|+..+.+..++.|+++||||+||.+++          .++.++++++++..++ .|+||||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 78999998877789999999999996543          5899999999999998 699999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCL  186 (208)
Q Consensus       174 i~~~f~~i~~~~~  186 (208)
                      |+++|+.+++.++
T Consensus       161 V~~~F~~~~~~~~  173 (176)
T cd04133         161 VKAVFDAAIKVVL  173 (176)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.3e-36  Score=235.73  Aligned_cols=163  Identities=23%  Similarity=0.382  Sum_probs=149.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+++|||  ++.++..+.|.++|.||++.++ .+.+.+++..+.++||||+|+++|..+++.++++||+++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            4578999999999999  5678889999999999999665 556888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||+++++||+++ ..|+..+.+..++.|+++||||+||.+            .+.++.++++++|+++++ .|+||||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            99999999999985 899999998877899999999999964            367999999999999999 7999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHHH
Q psy2518         169 KEDI-NVNSIFRYLTTKCLSE  188 (208)
Q Consensus       169 ~~~~-~i~~~f~~i~~~~~~~  188 (208)
                      ++|. ||+++|..++..+++.
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9998 8999999999988765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=9e-37  Score=228.79  Aligned_cols=159  Identities=22%  Similarity=0.379  Sum_probs=145.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|++++||  ++.++..+.|.+.|.||++.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            37999999999999  5788889999999999998654 57788999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518         105 FSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE  170 (208)
Q Consensus       105 ~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~  170 (208)
                      ||+++++||+++ ..|+..+.+..++.|+++||||+||.+            ++.++.++++++++++++ .|+||||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999996 899999998888999999999999954            356999999999999997 899999999


Q ss_pred             CCC-HHHHHHHHHHHHH
Q psy2518         171 DIN-VNSIFRYLTTKCL  186 (208)
Q Consensus       171 ~~~-i~~~f~~i~~~~~  186 (208)
                      |.| |+++|..+++..+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998654

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=2e-36  Score=229.40  Aligned_cols=162  Identities=23%  Similarity=0.385  Sum_probs=145.5

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|++++||  ++.++..+.|.+.|.||++.. +.+.+.+++..+.++||||+|+++|+.+++.+++++|++++
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            358999999999999  578888999999999999854 45667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecC
Q psy2518         104 TFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVK  169 (208)
Q Consensus       104 v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~  169 (208)
                      |||+++++||+++. .|...+.+..++.|+++||||+||.+.            +.++.++++++++.++. +|+||||+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            99999999999996 698888776668999999999999654            34788899999999984 99999999


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q psy2518         170 EDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~~  188 (208)
                      +|.||+++|+.+++.+...
T Consensus       161 ~g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCCHHHHHHHHHHHHhcc
Confidence            9999999999999988654

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0097|consensus

Probab=100.00  E-value=1.2e-35  Score=206.24  Aligned_cols=171  Identities=27%  Similarity=0.422  Sum_probs=160.5

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      --.|.+.||.+++|+-|+||  ++.+|..++|...-+.|+|++|..+.+.+.|++++++||||+|+++|+...+.||+++
T Consensus         5 pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga   84 (215)
T KOG0097|consen    5 PYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA   84 (215)
T ss_pred             ccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence            34688999999999999999  5678889999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      .+.+.|||++.+.+++.+..|+.......+ +..++++|||.||+.+|.|+.+++.+++.+.|+-|+|+|||+|.||++.
T Consensus        85 agalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda  164 (215)
T KOG0097|consen   85 AGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA  164 (215)
T ss_pred             cceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence            999999999999999999999999887766 7788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy2518         178 FRYLTTKCLSELRQ  191 (208)
Q Consensus       178 f~~i~~~~~~~~~~  191 (208)
                      |-+.++++......
T Consensus       165 fle~akkiyqniqd  178 (215)
T KOG0097|consen  165 FLETAKKIYQNIQD  178 (215)
T ss_pred             HHHHHHHHHHhhhc
Confidence            99999998876543

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4.4e-35  Score=217.12  Aligned_cols=161  Identities=29%  Similarity=0.428  Sum_probs=149.7

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  ++.++..+.|.+.+++|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            58999999999999  4688889999999999999999888889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||+++++||+.+..|+..+..... +.|+++||||+|+.+++.++.+++.++++..++++++|||++|.|++++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998877654 7899999999999888889999999999999999999999999999999999998


Q ss_pred             HHHH
Q psy2518         184 KCLS  187 (208)
Q Consensus       184 ~~~~  187 (208)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=4.1e-35  Score=218.74  Aligned_cols=160  Identities=29%  Similarity=0.360  Sum_probs=146.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  ++.++..+.|.+.+.||++. .+.+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED-AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc-eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999  46788899999999999984 4456678899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ||++++.||+.+..|...+.+..  ++.|+++||||+|+.+.++++.++++++++.++++|+||||++|.||+++|++++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988877653  3799999999999988788999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         183 TKCLS  187 (208)
Q Consensus       183 ~~~~~  187 (208)
                      +.+..
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            98775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=3.2e-35  Score=219.90  Aligned_cols=158  Identities=23%  Similarity=0.366  Sum_probs=142.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ++|++++|+.++||  ++.++..+.|.+.|.||++.++ .+.+.+++..+.++||||+|+++|..++..+++++|++++|
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv   79 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   79 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence            47999999999999  5788889999999999998555 45677889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhC-CeEEEEecCC
Q psy2518         105 FSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALG-CRLMRTSVKE  170 (208)
Q Consensus       105 ~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~e~Sa~~  170 (208)
                      ||+++++||+++. .|+..+.+..++.|+++||||+|+.+.            +.++.+++++++++.+ +.|+||||++
T Consensus        80 ~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          80 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            9999999999996 699888877678999999999998543            6788999999999888 5999999999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKC  185 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~  185 (208)
                      |.|++++|+.++..+
T Consensus       160 g~~v~~~f~~~~~~~  174 (175)
T cd01874         160 QKGLKNVFDEAILAA  174 (175)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998864

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2e-34  Score=216.14  Aligned_cols=163  Identities=25%  Similarity=0.389  Sum_probs=149.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC----------CeEEEEEEEeCCChhhhcchhH
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE----------GEEVRLMLWDTAGQEEFDAITK   92 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~----------~~~~~l~i~Dt~g~~~~~~~~~   92 (208)
                      .+.+||+++|++++||  +++++..+.|.+.+.+|++.++..+.+.+.          +..+.++||||+|++++..++.
T Consensus         2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   81 (180)
T cd04127           2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT   81 (180)
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence            4679999999999999  568888999999999999999888777764          4678999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                      .+++++|++++|||+++++||.++..|+..+....  ++.|+++||||+|+.+.+.++.+++.+++...+++++++||++
T Consensus        82 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~  161 (180)
T cd04127          82 AFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAAT  161 (180)
T ss_pred             HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence            99999999999999999999999999999987764  3789999999999988788999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCLS  187 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~~  187 (208)
                      |.|++++|+.+++.+++
T Consensus       162 ~~~v~~l~~~l~~~~~~  178 (180)
T cd04127         162 GTNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.3e-34  Score=217.85  Aligned_cols=159  Identities=21%  Similarity=0.317  Sum_probs=141.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|++++||  ++.++..+.|.++|.||+|.++..+.+.+++..+.++||||+|+++|..++..++++||++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999  46788899999999999999998899999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC-----CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD-----QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      |+++++||+++..|+..+.+..+ ..| ++||||+|+..     ++....++++++++..++++++|||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999987665 455 68899999842     122234677889998999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         180 YLTTKCLS  187 (208)
Q Consensus       180 ~i~~~~~~  187 (208)
                      .+++.++.
T Consensus       160 ~l~~~l~~  167 (182)
T cd04128         160 IVLAKAFD  167 (182)
T ss_pred             HHHHHHHh
Confidence            99998875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=3.1e-34  Score=219.09  Aligned_cols=164  Identities=29%  Similarity=0.471  Sum_probs=149.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +||+++|+.++||  +++++..+.|.+.+.||+|.++..+.+.++ +..+.+++|||+|++++..+++.+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5999999999999  468888999999999999999988888888 8899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f  178 (208)
                      ||+++++||+.+..|+..+....     .+.|+++||||+|+.+.+.+..+++.++++..+ ..|++|||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886532     378999999999997667889999999999999 599999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy2518         179 RYLTTKCLSELRQ  191 (208)
Q Consensus       179 ~~i~~~~~~~~~~  191 (208)
                      +.+++.+.+..+.
T Consensus       161 ~~l~~~l~~~~~~  173 (201)
T cd04107         161 RFLVKNILANDKN  173 (201)
T ss_pred             HHHHHHHHHhchh
Confidence            9999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.7e-34  Score=213.14  Aligned_cols=157  Identities=26%  Similarity=0.443  Sum_probs=146.8

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|.+.+.||+|.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999  46788899999999999999988889999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |+++++||+.+..|+..+.+..+ +.|+++||||+|+.+++.+..+++..+++..+++|+||||++|.||+++|.++++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765 79999999999998888899999999999999999999999999999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=2.5e-34  Score=221.80  Aligned_cols=162  Identities=19%  Similarity=0.359  Sum_probs=145.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|.+.|.||++.++ ...+.+++..+.++||||+|++.|..+++.+|+++|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            7999999999999  5788889999999999998655 567888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518         106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      |+++++||+++ ..|...+....++.|++|||||+||.+.            ..++.++++.++++.++ .|+||||+++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~  160 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS  160 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            99999999999 6788888777778999999999999542            24888999999999996 9999999999


Q ss_pred             CC-HHHHHHHHHHHHHHHhh
Q psy2518         172 IN-VNSIFRYLTTKCLSELR  190 (208)
Q Consensus       172 ~~-i~~~f~~i~~~~~~~~~  190 (208)
                      .+ |+++|..++...+.+..
T Consensus       161 ~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         161 ERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CcCHHHHHHHHHHHHHhccC
Confidence            85 99999999998776543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=1.1e-34  Score=213.82  Aligned_cols=158  Identities=30%  Similarity=0.472  Sum_probs=151.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|+.++||  ++.++..+.|.+.+.||+|.+...+.+.+++..+.+++||++|++++..+...+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999  467888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +++++||+++..|+..+....+ +.|++++|||+|+.+.+.++.+++++++++++++|+||||+++.||.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999999988 799999999999988899999999999999999999999999999999999999987


Q ss_pred             H
Q psy2518         186 L  186 (208)
Q Consensus       186 ~  186 (208)
                      +
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.6e-34  Score=211.48  Aligned_cols=162  Identities=31%  Similarity=0.534  Sum_probs=150.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|+.++||  ++.++..+.|.+.+.||++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            579999999999999  578888999999999999999888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||++++++|+.+..|+..+.+... +.|+++||||+|+.+.+.+..+++..++..++++++++||++|.|++++|++++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999987654 789999999999987788888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         183 TKCLS  187 (208)
Q Consensus       183 ~~~~~  187 (208)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=7.9e-34  Score=216.54  Aligned_cols=169  Identities=31%  Similarity=0.535  Sum_probs=155.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ++..+||+++|+.++||  ++.++..+.|...+.||++.++....+.+++..+.+.||||+|++.+..++..++++++++
T Consensus         3 ~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i   82 (199)
T cd04110           3 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGV   82 (199)
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence            56689999999999999  4678888999999999999999888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ++|||+++++||+.+..|+..+....+..|+++||||+|+.+.+.+..+++..++...+++|+++||++|.||+++|+.+
T Consensus        83 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l  162 (199)
T cd04110          83 IVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCI  162 (199)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999999999998877789999999999998777888899999999999999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy2518         182 TTKCLSELRQQ  192 (208)
Q Consensus       182 ~~~~~~~~~~~  192 (208)
                      ++.++.....+
T Consensus       163 ~~~~~~~~~~~  173 (199)
T cd04110         163 TELVLRAKKDN  173 (199)
T ss_pred             HHHHHHhhhcc
Confidence            99988765443

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=3.1e-34  Score=217.79  Aligned_cols=156  Identities=22%  Similarity=0.346  Sum_probs=132.0

Q ss_pred             eeeEEEecCceEEE-EEE--eee-----cCcccccccccccc-ceeeEE--------EEECCeEEEEEEEeCCChhhhcc
Q psy2518          27 ITKAYYRGAQACVI-TFS--TID-----RDSFEAAHSWKMKV-SIKRTI--------KECEGEEVRLMLWDTAGQEEFDA   89 (208)
Q Consensus        27 ~~ki~~vG~s~~gk-~~~--~~~-----~~~f~~~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~Dt~g~~~~~~   89 (208)
                      .+||+++|++++|| .+.  ++.     .+.|.++|.||++. +.+...        ..+++..+.++||||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            47999999999999 332  333     34567889999973 433332        25789999999999999986  3


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC-------------------CCCCCH
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD-------------------QSVVAP  149 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~-------------------~~~v~~  149 (208)
                      +.+.+++++|++++|||++++.||+++. .|+..+.+..++.|+++||||+||.+                   .+.++.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4567899999999999999999999996 69999887777899999999999964                   478999


Q ss_pred             HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         150 EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       150 ~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ++++++|++++++|+||||++|.||+++|+.+++.
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999998864

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=1.4e-33  Score=217.78  Aligned_cols=169  Identities=27%  Similarity=0.457  Sum_probs=155.9

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      ++.+.+||+++|++++||  ++.++..+.|...+.+|+|.++..+.+.+++..+.++||||+|++++..++..+++++++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            356789999999999999  466888899988999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+++..|+..+.+..+ +.|+++||||+|+.+.+.++.+++..++...+++++++||++|.|++++|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999888765 799999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy2518         180 YLTTKCLSELRQ  191 (208)
Q Consensus       180 ~i~~~~~~~~~~  191 (208)
                      .+++.+.+....
T Consensus       168 ~l~~~i~~~~~~  179 (216)
T PLN03110        168 TILLEIYHIISK  179 (216)
T ss_pred             HHHHHHHHHhhc
Confidence            999998775443

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=1.3e-33  Score=209.19  Aligned_cols=161  Identities=30%  Similarity=0.483  Sum_probs=148.6

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ++||+++|+.++||  ++.++..+.|...+.||+|.++..+.+..++..+.+++|||+|++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v   80 (165)
T cd01865           1 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM   80 (165)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence            37999999999999  5788889999999999999888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||++++++|+.+..|+..+.+... ..|+++||||+|+.+.+.+..+++.+++..++++++++||++|.|++++|+.+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999987765 7899999999999877788888999999999999999999999999999999998


Q ss_pred             HHHH
Q psy2518         184 KCLS  187 (208)
Q Consensus       184 ~~~~  187 (208)
                      .+.+
T Consensus       161 ~~~~  164 (165)
T cd01865         161 IICD  164 (165)
T ss_pred             HHHh
Confidence            8764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=5.9e-34  Score=212.86  Aligned_cols=156  Identities=23%  Similarity=0.385  Sum_probs=140.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|+.++||  ++.++..+.|.++|.||++ +.+.+.+.+++..+.++||||+|++.+..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999  4677888999999999997 566677788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518         106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      |+++++||+++. .|+..+....++.|+++||||+|+.+.            +.++.+++++++++++. +|+||||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999995 698888777668999999999999542            36889999999999995 9999999999


Q ss_pred             CCHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTK  184 (208)
Q Consensus       172 ~~i~~~f~~i~~~  184 (208)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=5.3e-34  Score=220.42  Aligned_cols=162  Identities=23%  Similarity=0.350  Sum_probs=147.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|++|+||  ++.++..+.|...+.||+|.++....+..++..+.+++|||+|+++|..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            5679999999999999  46778899999999999999998888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      +|||+++++||+++..|+..+.+..++.|+++||||+|+.. +.+..+++ .+++..+++|++|||++|.||+++|.+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~  168 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHH
Confidence            99999999999999999999988777899999999999954 45556655 67888889999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         183 TKCLSE  188 (208)
Q Consensus       183 ~~~~~~  188 (208)
                      +.+...
T Consensus       169 ~~~~~~  174 (219)
T PLN03071        169 RKLAGD  174 (219)
T ss_pred             HHHHcC
Confidence            988654

>KOG0393|consensus

Probab=100.00  E-value=9.3e-34  Score=210.62  Aligned_cols=165  Identities=24%  Similarity=0.382  Sum_probs=152.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ...+|+++||+.++||  ++..+..+.|.++|.||+- |-+...+.++ |+.+.+.+|||+||+.|..+++..|..+|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999  5788889999999999997 8888889995 9999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518         102 VITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS  167 (208)
Q Consensus       102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S  167 (208)
                      ++||++++++||+++ .+|+.++.+++++.|+|+||+|.||..+            ..++.++++.+|++.|+ .|+|||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            999999999999998 8999999999999999999999999742            47899999999999996 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         168 VKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      |++..|+.++|+..+..++....
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999999887653

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=2.1e-33  Score=212.49  Aligned_cols=166  Identities=26%  Similarity=0.327  Sum_probs=149.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|++++||  ++.++..+.|...+.||++..+ .+.+.+++..+.++||||+|+++|..++..+++++|++++
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            458999999999999  4678889999999999998544 6788899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++++|+.+..|+..+.+...  +.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.||+++|..+
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999998877654  78999999999997778888888999999889999999999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy2518         182 TTKCLSELRQQ  192 (208)
Q Consensus       182 ~~~~~~~~~~~  192 (208)
                      ++.+.+..++.
T Consensus       163 ~~~l~~~~~~~  173 (189)
T PTZ00369        163 VREIRKYLKED  173 (189)
T ss_pred             HHHHHHHhhcc
Confidence            99988765543

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=2e-33  Score=216.78  Aligned_cols=161  Identities=23%  Similarity=0.282  Sum_probs=148.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +||+++|++++||  +++++.++.|...|.||++.+++.+.+.+++ ..+.++||||+|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999  5788889999999999999999999888865 689999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ||+++++||+++..|+..+.+...    ++|+++||||+|+.+.+.++.+++..+++.++++++++||++|.||+++|+.
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999987653    4689999999999877889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         181 LTTKCLSE  188 (208)
Q Consensus       181 i~~~~~~~  188 (208)
                      +++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>KOG0395|consensus

Probab=100.00  E-value=9.2e-33  Score=208.98  Aligned_cols=161  Identities=30%  Similarity=0.395  Sum_probs=152.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+|++++|..|+||  +..+|.++.|.+.|.||++ +.+.+.+.++++.+.+.|+||+|++.|..+...+++++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999  6799999999999999998 8899999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ||+++++.||+.+..+..++.+...  ..|+++||||+|+...|+|+.+++++++..++++|+|+||+.+.+++++|..+
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999966554  78999999999999889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         182 TTKCLS  187 (208)
Q Consensus       182 ~~~~~~  187 (208)
                      ++.+-.
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998765

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=3.4e-33  Score=211.17  Aligned_cols=165  Identities=27%  Similarity=0.456  Sum_probs=152.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  +++++..+.|...+.+|+|.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999  57888899999889999998888888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++++|+++..|+..+.+... ..|++++|||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999987765 68999999999998778889999999999989999999999999999999999999


Q ss_pred             HHHHhhhh
Q psy2518         185 CLSELRQQ  192 (208)
Q Consensus       185 ~~~~~~~~  192 (208)
                      +..+....
T Consensus       161 ~~~~~~~~  168 (188)
T cd04125         161 IIKRLEEQ  168 (188)
T ss_pred             HHHHhhcC
Confidence            88765443

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.9e-33  Score=207.26  Aligned_cols=160  Identities=29%  Similarity=0.500  Sum_probs=149.1

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+|++++|.+++||  ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            58999999999999  5788888999999999999999889999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||+++++||.++..|+..+.+... +.|+++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++|..+++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            999999999999999999987763 7899999999999877888899999999999999999999999999999999998


Q ss_pred             HHH
Q psy2518         184 KCL  186 (208)
Q Consensus       184 ~~~  186 (208)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            875

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=2.8e-33  Score=215.26  Aligned_cols=165  Identities=28%  Similarity=0.467  Sum_probs=151.1

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      .+||+++|++++||  +++++..+.|...+.||+|.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            58999999999999  57888889999999999999999888887 5778999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||+++++||+++..|+..+.+...  ..|+++||||+|+.+.+.++.+++.++++.++++|+++||++|.|++++|+.+
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887654  57789999999998878899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy2518         182 TTKCLSELRQ  191 (208)
Q Consensus       182 ~~~~~~~~~~  191 (208)
                      ++.+.+..+.
T Consensus       162 ~~~~~~~~~~  171 (211)
T cd04111         162 TQEIYERIKR  171 (211)
T ss_pred             HHHHHHHhhc
Confidence            9998876543

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2e-33  Score=213.98  Aligned_cols=154  Identities=24%  Similarity=0.405  Sum_probs=140.8

Q ss_pred             ecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh
Q psy2518          33 RGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR  110 (208)
Q Consensus        33 vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~  110 (208)
                      +|+.++||  ++.++..+.|.+.|.||+|.++..+.+.+++..+.++||||+|+++|..++..+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999  5788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         111 DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       111 ~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      .||+++..|+..+.+..++.|+++||||+|+.. +.+..+. ..+++..++.|+||||++|.||+++|.++++.+...
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~  156 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  156 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999998877899999999999864 5566554 467888899999999999999999999999988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.8e-33  Score=207.76  Aligned_cols=159  Identities=27%  Similarity=0.353  Sum_probs=143.4

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|+.++||  +++++..+.|.++|.||++.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999  578889999999999999999988889999999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc-C-CCCEEEEEeCCCCCCCCC--CCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENEC-G-EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~-~-~~piivvgnK~Dl~~~~~--v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ++++++|+.+..|+..+.+.. + +.|+++||||+|+.+.+.  +.++++..++++++++|+++||++|.|++++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999886553 3 578999999999965433  456778888888899999999999999999999999


Q ss_pred             HHHHH
Q psy2518         183 TKCLS  187 (208)
Q Consensus       183 ~~~~~  187 (208)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=2.1e-33  Score=212.58  Aligned_cols=161  Identities=26%  Similarity=0.359  Sum_probs=142.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      .||+++|+.++||  ++.++..+.|.+.+.||++..+ .+.+.+++..+.++||||+|++.|..+++.+++++|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3899999999999  5688889999999999998654 456777888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhC-CeEEEEecCCC
Q psy2518         106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALG-CRLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~e~Sa~~~  171 (208)
                      |+++++||+.+. .|+..+....++.|+++||||+|+.+.+            .++.+++..+++..+ ++|+||||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999985 6999998777789999999999996543            467788888988887 59999999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q psy2518         172 INVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~~~~  189 (208)
                      .||+++|.++++.++...
T Consensus       160 ~~v~e~f~~l~~~~~~~~  177 (189)
T cd04134         160 RGVNEAFTEAARVALNVR  177 (189)
T ss_pred             CCHHHHHHHHHHHHhccc
Confidence            999999999999887544

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=3.6e-33  Score=205.75  Aligned_cols=157  Identities=29%  Similarity=0.411  Sum_probs=143.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|.+.+.||++ +.+.+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999  4688889999999999997 667788889999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++++|+.+..|+..+.+...  +.|+++|+||+|+.+.+.+..+++..+++.++.+++++||++|.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998877643  7999999999999777788888888899888899999999999999999999987


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            64

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=5.3e-33  Score=210.50  Aligned_cols=162  Identities=24%  Similarity=0.373  Sum_probs=144.9

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|+.++||  +++++..+.|.+.+.||++.. +.+.+.+++..+.++||||+|+++|..++..+++++|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999  467788899999999999854 45667788999999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      +++++||+.+..|+..+....    ++.|+++||||+|+.+.+.++.+++..++..++++|+++||++|.|++++|+.++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999998887654    3689999999999987788898889999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy2518         183 TKCLSELRQ  191 (208)
Q Consensus       183 ~~~~~~~~~  191 (208)
                      +.+..+...
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            987655443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=211.06  Aligned_cols=167  Identities=25%  Similarity=0.464  Sum_probs=153.9

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.+.+||+++|+.++||  +++++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++.+..++..+++++|++
T Consensus         3 ~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~   82 (210)
T PLN03108          3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGA   82 (210)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45689999999999999  5688888889999999999999889999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+.+.++.++++++++.++++++++||+++.||+++|.+
T Consensus        83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988876654 7999999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh
Q psy2518         181 LTTKCLSELR  190 (208)
Q Consensus       181 i~~~~~~~~~  190 (208)
                      +++.+.+...
T Consensus       163 l~~~~~~~~~  172 (210)
T PLN03108        163 TAAKIYKKIQ  172 (210)
T ss_pred             HHHHHHHHhh
Confidence            9999887644

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=7.1e-33  Score=204.83  Aligned_cols=159  Identities=24%  Similarity=0.385  Sum_probs=147.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|.+++||  +++++.++.|.+.+.||++.++..+.+.+++..+.+++|||+|++.+..+++.+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999  57888899999999999999998899999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC------CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG------EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~------~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      |++++.+|+.+..|+..+.+...      +.|+++|+||+|+.+++.+..++++.++...+++++++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999887653      589999999999976677889999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy2518         180 YLTTKCL  186 (208)
Q Consensus       180 ~i~~~~~  186 (208)
                      .+++.++
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1e-32  Score=212.70  Aligned_cols=160  Identities=23%  Similarity=0.324  Sum_probs=139.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  ++.++..+.|.. +.||+|.++..+..    ..+.+.||||+|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            5899999999999  578888999975 68899877655433    5688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHhC-----
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD-------------------QSVVAPEEADLLSRALG-----  160 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~-------------------~~~v~~~~~~~~~~~~~-----  160 (208)
                      |+++++||+++..|+..+.+... +.|+++||||+||.+                   .++++.++++.++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            99999999999888877776544 789999999999965                   68899999999999876     


Q ss_pred             ---------CeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2518         161 ---------CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ  192 (208)
Q Consensus       161 ---------~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~  192 (208)
                               ++|+||||++|.||+++|..+++.++...-+.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~  196 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQ  196 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence                     68999999999999999999999887655443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=1e-32  Score=203.96  Aligned_cols=157  Identities=29%  Similarity=0.410  Sum_probs=142.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|.+.+.||++.. +.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            6999999999999  467888899999999999844 4677888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++.+|+.+.+|+..+.+..  .+.|+++||||+|+.+++.++.+++.++++.++++++++||++|.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999999987654  37999999999999877778888888899989999999999999999999999987


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      .+
T Consensus       161 ~l  162 (164)
T cd04175         161 QI  162 (164)
T ss_pred             Hh
Confidence            65

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=2e-32  Score=203.36  Aligned_cols=164  Identities=26%  Similarity=0.467  Sum_probs=151.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      |..++||+++|.+++||  ++.++..+.+...+.+|.|.++..+.+.+++..+.+.+|||+|++++..+...+++++|++
T Consensus         1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   80 (168)
T cd01866           1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   80 (168)
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            56789999999999999  5677888899999999999998888899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.||+.+..|+..+.+.. ++.|+++|+||.|+.+++.++.+++..++...+++++|+||+++.|++++|..
T Consensus        81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~  160 (168)
T cd01866          81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN  160 (168)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998765 37999999999999877788999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy2518         181 LTTKCLS  187 (208)
Q Consensus       181 i~~~~~~  187 (208)
                      +++.+++
T Consensus       161 ~~~~~~~  167 (168)
T cd01866         161 TAKEIYE  167 (168)
T ss_pred             HHHHHHh
Confidence            9988754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=1.8e-32  Score=202.72  Aligned_cols=160  Identities=28%  Similarity=0.470  Sum_probs=148.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|.+++||  +++++..+.|...+.||++.++..+.+..++..+.+++||++|++++..++..++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            468999999999999  578888899999999999999989999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||++++.+|+++.+|+..+.+..+ +.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999988776 699999999999987788889999999998889999999999999999999998


Q ss_pred             HHH
Q psy2518         183 TKC  185 (208)
Q Consensus       183 ~~~  185 (208)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=1.2e-32  Score=202.80  Aligned_cols=157  Identities=53%  Similarity=0.789  Sum_probs=145.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +||+++|++++||  +++++..+.|.+.+.||++.++..+.+.+.  +..+.+++|||+|++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999  578888899999999999999888888887  888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |||++++++|+.+..|+..+.+..++.|+++|+||+|+..++.+..+++..+++..+++++++||++|.|++++|+.+.+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999999877778999999999999877888889999999999999999999999999999999875


Q ss_pred             H
Q psy2518         184 K  184 (208)
Q Consensus       184 ~  184 (208)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PTZ00099 rab6; Provisional

Probab=100.00  E-value=9.2e-32  Score=201.09  Aligned_cols=143  Identities=29%  Similarity=0.431  Sum_probs=132.7

Q ss_pred             cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2518          47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE  126 (208)
Q Consensus        47 ~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  126 (208)
                      .+.|.+.|.||+|.++..+.+.+++..+++.||||+|++++..++..++++||++|+|||+++++||+.+..|+..+.+.
T Consensus         2 ~~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~   81 (176)
T PTZ00099          2 YDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE   81 (176)
T ss_pred             CCCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             cC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         127 CG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       127 ~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      .. +.|+++||||+||.+.+.++.+++..++..+++.|+||||++|.||+++|+++++.+.+..
T Consensus        82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            54 7899999999999877788999999999999999999999999999999999999987644

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.9e-32  Score=203.22  Aligned_cols=158  Identities=26%  Similarity=0.414  Sum_probs=142.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  ++.++..+.|...+.||++.++....+..++..+.+++|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5999999999999  46777789999999999999988888888899999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      |+++++||+.+..|+..+.+..++.|+++||||+|+.+ +.+.. +..++++..+++++|+||++|.|++++|+++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            99999999999999999988877899999999999963 44443 44567777778999999999999999999999988


Q ss_pred             HH
Q psy2518         186 LS  187 (208)
Q Consensus       186 ~~  187 (208)
                      .+
T Consensus       159 ~~  160 (166)
T cd00877         159 LG  160 (166)
T ss_pred             Hh
Confidence            65

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=2.9e-32  Score=201.77  Aligned_cols=159  Identities=32%  Similarity=0.476  Sum_probs=146.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|.+++||  ++.++..+.|.+++.+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            579999999999999  467778899999999999988888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..+++..+. .++++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999999987654 799999999999987778888899999998887 78999999999999999999


Q ss_pred             HHH
Q psy2518         182 TTK  184 (208)
Q Consensus       182 ~~~  184 (208)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            865

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=2.1e-32  Score=201.93  Aligned_cols=157  Identities=22%  Similarity=0.358  Sum_probs=143.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  ++.++..+.|.+.+.||++ +++.+.+.+++..+.++||||+|+++|..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            7999999999999  4568889999999999987 677788889999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++.||+++..|+..+.+..  .+.|+++||||+|+.+++.+..+++..+++..++++++|||++|.|++++|..+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998888764  37999999999999777778888888899888899999999999999999999987


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            54

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=3.9e-32  Score=205.93  Aligned_cols=162  Identities=25%  Similarity=0.460  Sum_probs=148.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +||+++|+.++||  ++.++..+.|.. .+.+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            5899999999999  467777888864 7889999898888889999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||++++++|+++..|+..+.+..+ ..|+++||||+|+..++.+..+++..+++.++++|+++||++|.|++++|..+++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999999999999988765 7899999999999777888888999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy2518         184 KCLSEL  189 (208)
Q Consensus       184 ~~~~~~  189 (208)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=4.4e-32  Score=201.91  Aligned_cols=159  Identities=30%  Similarity=0.446  Sum_probs=146.3

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-chhHhhhcCCcEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-AITKAYYRGAQACVI  103 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~~~~~~~~d~ii~  103 (208)
                      .+||+++|++++||  ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999  567888899999999999999999999999999999999999999887 578889999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCCHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE---DINVNSIF  178 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~---~~~i~~~f  178 (208)
                      |||++++.+|+.+..|+..+.....  +.|+++|+||+|+.+.+.++.+++.++++..+++|+||||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            9999999999999999999887653  799999999999988888999999999999999999999999   89999999


Q ss_pred             HHHHHHH
Q psy2518         179 RYLTTKC  185 (208)
Q Consensus       179 ~~i~~~~  185 (208)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=6.2e-32  Score=203.92  Aligned_cols=163  Identities=23%  Similarity=0.356  Sum_probs=143.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +||+++|+.++||  ++.++..+.|.+.+.||++.++.. .+... +..+.++||||+|++++..+++.+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            5899999999999  468888999999999999866644 45554 8889999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC----CCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHH
Q psy2518         105 FSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ----SVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIF  178 (208)
Q Consensus       105 ~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f  178 (208)
                      ||+++++||+++. .|+..+....++.|+++||||+|+.++    +.+..+++++++..+++ ++++|||++|.||+++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  159 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence            9999999999995 698888776668999999999999543    36778899999999998 99999999999999999


Q ss_pred             HHHHHHHHHHhhh
Q psy2518         179 RYLTTKCLSELRQ  191 (208)
Q Consensus       179 ~~i~~~~~~~~~~  191 (208)
                      ..+++.+......
T Consensus       160 ~~l~~~~~~~~~~  172 (187)
T cd04132         160 DTAIEEALKKEGK  172 (187)
T ss_pred             HHHHHHHHhhhhh
Confidence            9999998876544

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=7.9e-32  Score=200.29  Aligned_cols=159  Identities=28%  Similarity=0.449  Sum_probs=144.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  ++.++..+.|.+.+.+|+|.++..+.+.+++..+.++||||+|++++..++..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            3579999999999999  46778889999999999999888888999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNS  176 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~  176 (208)
                      +|||+++++||+.+..|...+.+...     +.|+++||||+|+. ++.+..+++++++++++. +++++||++|.|+.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988876542     58999999999996 567888999999999885 899999999999999


Q ss_pred             HHHHHHHH
Q psy2518         177 IFRYLTTK  184 (208)
Q Consensus       177 ~f~~i~~~  184 (208)
                      +|+.+++.
T Consensus       162 ~~~~~~~~  169 (170)
T cd04116         162 AFEEAVRR  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.2e-32  Score=200.41  Aligned_cols=150  Identities=18%  Similarity=0.220  Sum_probs=130.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++|+||  ++.++..+.|.+.+.|+.+ .+ .+.+.+++..+.+++|||+|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999  4567888999888877643 44 57788999999999999999975     35678999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCC--CCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLL--DQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      |+++++||+++..|+..+.+...  +.|+++||||+|+.  .++.++.+++++++++.+ +.|+||||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987763  78999999999985  357899999999998874 79999999999999999999


Q ss_pred             HHHH
Q psy2518         181 LTTK  184 (208)
Q Consensus       181 i~~~  184 (208)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04140 ARHI_like ARHI subfamily

Probab=99.98  E-value=1.1e-31  Score=198.81  Aligned_cols=155  Identities=21%  Similarity=0.289  Sum_probs=139.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  ++.++..+.|...+.||++ ..+.+.+..++..+.+++|||+|++++..++..+++.+|++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999  5678889999999999997 445667777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |+++++||+++..|+..+.+..    ++.|+++||||+|+.+.+.+..+++..++..++++|+||||++|.|++++|+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999988776653    368999999999997777888888898999889999999999999999999998


Q ss_pred             HH
Q psy2518         182 TT  183 (208)
Q Consensus       182 ~~  183 (208)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04124 RabL2 RabL2 subfamily

Probab=99.98  E-value=1.3e-31  Score=197.72  Aligned_cols=158  Identities=23%  Similarity=0.380  Sum_probs=140.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  ++.++..+.|.+.+.+|.+.+++.+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999  46778889999999999988888888888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      |++++.+|+++..|+..+.+..++.|+++|+||+|+...   ..++...++...+++++++||++|.|++++|+.+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999887678999999999998432   23455667777788999999999999999999999887


Q ss_pred             HHH
Q psy2518         186 LSE  188 (208)
Q Consensus       186 ~~~  188 (208)
                      ++.
T Consensus       158 ~~~  160 (161)
T cd04124         158 VSY  160 (161)
T ss_pred             Hhc
Confidence            653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.98  E-value=5e-32  Score=201.99  Aligned_cols=156  Identities=26%  Similarity=0.399  Sum_probs=140.1

Q ss_pred             EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518          30 AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST  107 (208)
Q Consensus        30 i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~  107 (208)
                      |+++|+.++||  ++.++..+.|...+.||++.. +...+.+++..+.+++|||+|++++..+++.+++++|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            57999999999  568888999999999998744 456778899999999999999999999999999999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518         108 IDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus       108 ~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      ++++||+++. .|+..+.+..++.|+++||||+|+..+            +.++.+++.++++..+. +|++|||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999995 699999887779999999999999642            34888999999999997 999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCL  186 (208)
Q Consensus       174 i~~~f~~i~~~~~  186 (208)
                      ++++|+.+++.++
T Consensus       160 v~~lf~~l~~~~~  172 (174)
T smart00174      160 VREVFEEAIRAAL  172 (174)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999998874

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04113 Rab4 Rab4 subfamily

Probab=99.98  E-value=1.5e-31  Score=197.08  Aligned_cols=157  Identities=29%  Similarity=0.442  Sum_probs=145.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++...++.+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999  46777889999999999999998899999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++.+|.++..|+..+..... +.|+++++||+|+.+.+.+..+++..+++..++.++++||+++.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998876654 89999999999998778889999999999999999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.98  E-value=1.8e-31  Score=197.11  Aligned_cols=158  Identities=21%  Similarity=0.350  Sum_probs=141.3

Q ss_pred             eeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +||+++|++++||  ++.++..+  .|.+++.+|+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            5899999999999  34555544  7889999999999888888775 67899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      +|||++++++|+.+..|+..+.+...+.|+++|+||+|+.+++++..++++.++...++++++|||++|.|++++|+.++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            99999999999999999999887766799999999999977777888888888888889999999999999999999998


Q ss_pred             HHH
Q psy2518         183 TKC  185 (208)
Q Consensus       183 ~~~  185 (208)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.98  E-value=1.7e-31  Score=197.22  Aligned_cols=158  Identities=31%  Similarity=0.425  Sum_probs=143.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  +++++..+.|...+.||++ +.+.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999  4688888999999999987 556777888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++++|+.+..|...+.+...  +.|+++||||+|+.+++.+..+++..+++..+.+|++|||++|.|++++|+.+++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888876544  7899999999999877778888899999999999999999999999999999998


Q ss_pred             HHH
Q psy2518         184 KCL  186 (208)
Q Consensus       184 ~~~  186 (208)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04118 Rab24 Rab24 subfamily

Probab=99.98  E-value=3.3e-31  Score=200.99  Aligned_cols=164  Identities=23%  Similarity=0.348  Sum_probs=147.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +||+++|++++||  ++.++..+.|.. .|.+|+|.++..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            5899999999999  578888899985 7999999888888999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC----CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD----QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~----~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ||++++.+|+++..|+..+....++.|+++|+||+|+.+    .+.+..+++.+++...+++++++||++|.|++++|+.
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999887766899999999999853    2456677888888888999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy2518         181 LTTKCLSELRQ  191 (208)
Q Consensus       181 i~~~~~~~~~~  191 (208)
                      +++.+.+...+
T Consensus       161 i~~~~~~~~~~  171 (193)
T cd04118         161 VAEDFVSRANN  171 (193)
T ss_pred             HHHHHHHhccc
Confidence            99998765543

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.98  E-value=1.6e-31  Score=199.45  Aligned_cols=155  Identities=22%  Similarity=0.341  Sum_probs=139.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|+.++||  ++.++..+.|..++.||.. +.+...+.+++..+.+++|||+|++++..+++.+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            6899999999999  4677778899999999984 677778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518         106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      |++++.||+.+ ..|+..+.+..++.|++++|||+|+..            ++.+..+++..+++..+. +|++|||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            99999999998 479988887656799999999999853            467889999999999998 9999999999


Q ss_pred             CCHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTT  183 (208)
Q Consensus       172 ~~i~~~f~~i~~  183 (208)
                      .||+++|+.++-
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999998764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=3.1e-31  Score=194.95  Aligned_cols=156  Identities=26%  Similarity=0.349  Sum_probs=140.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  +++++..+.|...+.||++. .+.+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh-eEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6999999999999  56888889999999999984 45677888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++.+|+++..|+..+.+...  +.|+++|+||+|+.+ +.+..+++.++++..+++++++||++|.|++++|+.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998887653  789999999999965 567788888899888999999999999999999999987


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=3.8e-31  Score=195.15  Aligned_cols=158  Identities=29%  Similarity=0.354  Sum_probs=142.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  +++++..+.|...+.+|++ +.+.+...+++..+.+++|||+|++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999  4677888999999999997 44566778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ||++++.+|+.+..|+..+.+...  +.|+++++||+|+..++.+..+++.++++..+++++++||++|.|++++|+.++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999999998877543  789999999999987777888888999998899999999999999999999998


Q ss_pred             HHH
Q psy2518         183 TKC  185 (208)
Q Consensus       183 ~~~  185 (208)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=1.8e-31  Score=203.24  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=140.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhcC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYRG   97 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~   97 (208)
                      +||+++|+.++||  +++++..+.|...+.||++.+++...+.+++..+.+++|||+|.+.+..        .....++.
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999  4678889999999999998888778888899999999999998654421        23345789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDI  172 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~  172 (208)
                      +|++++|||+++++||+.+..|+..+.+..    .+.|+++||||+|+...+.+..++++.++. ..+++|++|||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887764    379999999999997777788888877765 558899999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q psy2518         173 NVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~~~~  190 (208)
                      ||+++|+.+++.+..+-+
T Consensus       161 ~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         161 HILLLFKELLISATTRGR  178 (198)
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            999999999998876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=1.8e-31  Score=198.59  Aligned_cols=161  Identities=23%  Similarity=0.211  Sum_probs=142.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.++||+++|++|+||  ++.++..+.|. .+|.||++.++..+.+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            5789999999999999  57889999999 89999999888888888999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||.+++.+|+.+..|+..+... .+.|+++|+||+|+.+++.+..++.+++++.+++ .++++||++|.|++++|+.
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            9999999999999999998876432 3699999999999966555555666778888887 5799999999999999999


Q ss_pred             HHHHHH
Q psy2518         181 LTTKCL  186 (208)
Q Consensus       181 i~~~~~  186 (208)
                      +++.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            998875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=4.4e-31  Score=207.13  Aligned_cols=157  Identities=23%  Similarity=0.303  Sum_probs=141.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|+.++||  ++.++..+.|.+.|.||++ +++.+.+.+++..+.++||||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999  5788889999999999998 788888999999999999999999999988888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhh----------cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCH
Q psy2518         106 STIDRDSFEAAHSWKMKVENE----------CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINV  174 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~----------~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~i  174 (208)
                      |+++++||+++..|+.++...          ..+.|+++|+||+|+.+++.+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999888654          12789999999999977678888888887764 3678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKC  185 (208)
Q Consensus       175 ~~~f~~i~~~~  185 (208)
                      +++|+.+++.+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG4252|consensus

Probab=99.97  E-value=3.5e-33  Score=200.91  Aligned_cols=172  Identities=44%  Similarity=0.599  Sum_probs=164.9

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .++|...+|++++|..++||  .+.+++.+-|...|..|+|+|+....+.++++.+.+.+|||+|+++|..+.+.||++|
T Consensus        14 e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrga   93 (246)
T KOG4252|consen   14 ETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGA   93 (246)
T ss_pred             chhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccc
Confidence            56788999999999999999  5799999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      .+.++||+.+|+.||+.+..|.+++.+..+.+|.++|.||.||.++.++..++++.+++.+++.++.+|++...||.++|
T Consensus        94 qa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF  173 (246)
T KOG4252|consen   94 QASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVF  173 (246)
T ss_pred             cceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy2518         179 RYLTTKCLSELRQQ  192 (208)
Q Consensus       179 ~~i~~~~~~~~~~~  192 (208)
                      ..+++++..+.+++
T Consensus       174 ~YLaeK~~q~~kq~  187 (246)
T KOG4252|consen  174 AYLAEKLTQQKKQS  187 (246)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998877663

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=198.69  Aligned_cols=168  Identities=27%  Similarity=0.409  Sum_probs=146.9

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      ...+...+||+++|..++||  ++.++..+.+ ..+.||.|.++....+.+++..+.+.+|||+|+++|..++..+++++
T Consensus         8 ~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   86 (211)
T PLN03118          8 SSGYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA   86 (211)
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            45567789999999999999  4566666666 46889999888888888899999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHH-HHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          99 QACVITFSTIDRDSFEAAHS-WKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      |++++|||++++++|+++.. |...+.....  +.|+++|+||+|+...+.+..+++..++...++.|++|||++|.|++
T Consensus        87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~  166 (211)
T PLN03118         87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE  166 (211)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999965 6666654433  68999999999998777888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy2518         176 SIFRYLTTKCLSEL  189 (208)
Q Consensus       176 ~~f~~i~~~~~~~~  189 (208)
                      ++|+.+.+.+....
T Consensus       167 ~l~~~l~~~~~~~~  180 (211)
T PLN03118        167 QCFEELALKIMEVP  180 (211)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999987654

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=1.8e-30  Score=191.09  Aligned_cols=157  Identities=30%  Similarity=0.497  Sum_probs=144.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  ++.++..+.|...+.|+.+.++..+.+.+++..+++++|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999  46777889999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++++|+.+..|+..+.+..+ +.|+++++||+|+.+++.+..++...+++..+++++++||+++.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665 69999999999997767888899999999889999999999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=3e-30  Score=190.26  Aligned_cols=160  Identities=32%  Similarity=0.506  Sum_probs=147.3

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|.+++||  ++.++....+...+.+|++.++....+.+++..+.+++||++|++++......+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999  46778788888899999998888888999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++.+++.+..|+..+.... ++.|+++++||+|+...+.+..+.++++++..+++++++||++|.|++++|+.+.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999988876 489999999999997767788899999999999999999999999999999999988


Q ss_pred             HHH
Q psy2518         185 CLS  187 (208)
Q Consensus       185 ~~~  187 (208)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            754

Rab GTPases are implicated in vesicle trafficking.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=3e-30  Score=199.77  Aligned_cols=161  Identities=20%  Similarity=0.257  Sum_probs=141.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc-CCcEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR-GAQACVI  103 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~-~~d~ii~  103 (208)
                      +||+++|+.|+||  ++.++..+.|. ..+.+|.+.+++.+.+.+++..+.+.+|||+|++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            5899999999999  46777788887 78889988788889999999999999999999983  33455667 9999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.||+.+..|+..+.+...  +.|+++|+||+|+...+.++.+++.+++..++++|+++||++|.||+++|+.+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877653  79999999999998778888898999999999999999999999999999999


Q ss_pred             HHHHHHHhh
Q psy2518         182 TTKCLSELR  190 (208)
Q Consensus       182 ~~~~~~~~~  190 (208)
                      ++.+.....
T Consensus       159 ~~~~~~~~~  167 (221)
T cd04148         159 VRQIRLRRD  167 (221)
T ss_pred             HHHHHhhhc
Confidence            998865443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.97  E-value=1.5e-30  Score=192.51  Aligned_cols=157  Identities=29%  Similarity=0.355  Sum_probs=137.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhcCCcEEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYRGAQACVITF  105 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~d~ii~v~  105 (208)
                      ||+++|++++||  ++.+++.+.|...+.+|.+.. +.+.+.+++..+.+++|||+|+++ +......+++++|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999  356888889988899998644 456778899999999999999985 3445778899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFRYL  181 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~i  181 (208)
                      |++++.||+.+..|+..+.....   +.|+++||||+|+.+.+.++.+++.++++..+++|++|||++|. ||+++|+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            99999999999999988877642   79999999999997778889999999999999999999999995 999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=5e-30  Score=189.09  Aligned_cols=159  Identities=27%  Similarity=0.430  Sum_probs=146.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|++++||  +++++..+.+.+.+.+|.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            37999999999999  4688888999888999999888889999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||++++++|+....|+..+..... ..|+++++||+|+...+.++.++...++...++.++++||++|.|++++|+.+++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999999887763 7899999999999777788888999999999999999999999999999999998


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04177 RSR1 RSR1 subgroup

Probab=99.97  E-value=5.2e-30  Score=190.32  Aligned_cols=158  Identities=25%  Similarity=0.334  Sum_probs=143.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  ++.++..+.|...+.||++ +.+.+.+.+++..+.+++|||+|+++|..+++.+++.++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            6899999999999  4677888999999999998 455778888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |++++++|+.+..|...+.+...  +.|+++++||.|+.+.+.++.+++..+++.++ ++++++||++|.|++++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999998876543  79999999999998778888888888988888 6999999999999999999999


Q ss_pred             HHHH
Q psy2518         183 TKCL  186 (208)
Q Consensus       183 ~~~~  186 (208)
                      .+++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=3.4e-30  Score=192.09  Aligned_cols=157  Identities=22%  Similarity=0.324  Sum_probs=139.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  +++++..+.|.+.+.||++ +.+...+.+++..+.+++|||+|++.|...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999  4677888999989999987 555667888999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518         106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      |++++.+|+++. .|+..+.+..++.|+++||||+|+.+.            +.++.++++.+++..++ +|++|||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999999984 688888776568999999999998542            46888899999999997 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKC  185 (208)
Q Consensus       172 ~~i~~~f~~i~~~~  185 (208)
                      .|++++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=3e-29  Score=186.37  Aligned_cols=161  Identities=28%  Similarity=0.462  Sum_probs=145.3

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+++||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999  46788889999999999998888888899999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~~f~  179 (208)
                      |++++.+|+++..|...+.....     +.|+++|+||+|+..++.+..++...+++..+ .+++++||++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999899887766543     78999999999997666777888888888887 6999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         180 YLTTKCLSE  188 (208)
Q Consensus       180 ~i~~~~~~~  188 (208)
                      .+.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04114 Rab30 Rab30 subfamily

Probab=99.97  E-value=3.6e-29  Score=185.61  Aligned_cols=163  Identities=30%  Similarity=0.479  Sum_probs=146.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      ++...+|++++|.+++||  ++.++..+.+.+.+.+|++.++..+.+.+++..+.+.+||++|++.+...+..+++.+|+
T Consensus         3 ~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~   82 (169)
T cd04114           3 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANA   82 (169)
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence            456789999999999999  456666778888899999988888889999999999999999999999988999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+..|+..+..... ..|+++|+||+|+.+++.+..+..+.+.+.....+++|||++|.|++++|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  162 (169)
T cd04114          83 LILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL  162 (169)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence            9999999999999999999998877665 789999999999987778888888888887788999999999999999999


Q ss_pred             HHHHHH
Q psy2518         180 YLTTKC  185 (208)
Q Consensus       180 ~i~~~~  185 (208)
                      .+.+.+
T Consensus       163 ~i~~~~  168 (169)
T cd04114         163 DLACRL  168 (169)
T ss_pred             HHHHHh
Confidence            998764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04123 Rab21 Rab21 subfamily

Probab=99.97  E-value=3.4e-29  Score=184.01  Aligned_cols=158  Identities=28%  Similarity=0.471  Sum_probs=144.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|.+++||  +++++..+.+.+.+.+|.+.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999  46788888888888888887888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++++++.+..|+..+.+..+ +.|+++++||+|+..++.+..++..++++..+++++++||+++.|++++|+++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999887766 78999999999998777888888888999899999999999999999999999876


Q ss_pred             H
Q psy2518         185 C  185 (208)
Q Consensus       185 ~  185 (208)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=3.3e-29  Score=184.45  Aligned_cols=156  Identities=30%  Similarity=0.473  Sum_probs=141.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|..++||  +++++..+.+...+.||.+.++....+.+++..+.+++|||+|++.+..+...+++.+|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            6899999999999  46778888888889999998888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++.+|+.+..|+..+.+...  +.|+++++||+|+.+ +.+..++..+++...+++++++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999999887754  799999999999964 566778889999999999999999999999999999887


Q ss_pred             H
Q psy2518         184 K  184 (208)
Q Consensus       184 ~  184 (208)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            5

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.97  E-value=2.3e-29  Score=187.75  Aligned_cols=157  Identities=29%  Similarity=0.464  Sum_probs=137.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      .||+++|+.++||  ++.++.++.|.+.|.||++..+ ...+.+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999  5788889999999999998554 456788899999999999999999998888999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518         106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus       106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      |++++++|+++ ..|+..+.+..++.|+++|+||+|+.+.            ..+..++++++++..+. ++++|||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            99999999998 4688888776668999999999998532            34667888889988876 8999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKC  185 (208)
Q Consensus       172 ~~i~~~f~~i~~~~  185 (208)
                      .|++++|+.+++.+
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.96  E-value=3.3e-29  Score=190.74  Aligned_cols=145  Identities=13%  Similarity=0.278  Sum_probs=127.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-----CeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-----GEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      +||+++|++++||  ++.++..+.|.+.+.||+|.++..+.+.++     +..+.++||||+|+++|..++..+|+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999  578888999999999999988888887774     578999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc--------------------CCCCEEEEEeCCCCCCCCCCCHHH----HHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC--------------------GEIPTVLVQNKIDLLDQSVVAPEE----ADLLS  156 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--------------------~~~piivvgnK~Dl~~~~~v~~~~----~~~~~  156 (208)
                      +|+|||+++++||+++..|+.++.+..                    .+.|+++||||+|+.++|.+..+.    ...+|
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999987641                    268999999999997777666653    44578


Q ss_pred             HHhCCeEEEEecCCCC
Q psy2518         157 RALGCRLMRTSVKEDI  172 (208)
Q Consensus       157 ~~~~~~~~e~Sa~~~~  172 (208)
                      .+.+++.++.+++++.
T Consensus       161 ~~~~~~~i~~~c~~~~  176 (202)
T cd04102         161 EQGNAEEINLNCTNGR  176 (202)
T ss_pred             HhcCCceEEEecCCcc
Confidence            8899999999998653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=8.1e-29  Score=187.12  Aligned_cols=162  Identities=27%  Similarity=0.398  Sum_probs=140.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      .|++++|+.|+||  +++++..+.|.+.+.+|++.. +...+.+++..+.+.+|||+|++.+......+++++|++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999  457777788988888988744 4456778888899999999999998887778899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC----------CCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518         106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD----------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus       106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~----------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      |++++++|+.+. .|+..+.+..++.|+++||||+|+.+          .+.+..+++..+++..+. +||+|||++|.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            999999999995 69999988777899999999999854          356777889999999986 899999999999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q psy2518         174 VNSIFRYLTTKCLSELR  190 (208)
Q Consensus       174 i~~~f~~i~~~~~~~~~  190 (208)
                      ++++|+.+++.++...+
T Consensus       161 v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         161 VDDVFEAATRAALLVRK  177 (187)
T ss_pred             HHHHHHHHHHHHhcccC
Confidence            99999999988765443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=2.7e-28  Score=179.67  Aligned_cols=158  Identities=30%  Similarity=0.363  Sum_probs=141.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|.+++||  +++++..+.|...+.+|++ +.+.+....++..+.+.+|||+|++.+...+..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999  4678888999999999987 455677788999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |++++.+|.++..|+..+....  .+.|+++|+||+|+...+....++...++..++++++++||++|.|++++|+.+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999999888774  37999999999999765667788888889888999999999999999999999988


Q ss_pred             HHH
Q psy2518         184 KCL  186 (208)
Q Consensus       184 ~~~  186 (208)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2.4e-29  Score=186.17  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=127.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      .|+++|+.++||  ++.++..+.|.+.+.||+|.+.    ..+++..+++.+|||+|+++++.++..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            378999999999  4678888889999999998653    3456677899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH----HHHHHHHHHhCCeEEEEecCC------CCCHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP----EEADLLSRALGCRLMRTSVKE------DINVNS  176 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~----~~~~~~~~~~~~~~~e~Sa~~------~~~i~~  176 (208)
                      .+++.+|.....|+..+.+..++.|+++|+||+|+...+.+..    .++..++++.++.+++|||++      ++||++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~  156 (164)
T cd04162          77 SADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKD  156 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHH
Confidence            9999999999999988876556899999999999976554332    234556666778899999998      999999


Q ss_pred             HHHHHHH
Q psy2518         177 IFRYLTT  183 (208)
Q Consensus       177 ~f~~i~~  183 (208)
                      +|+.++.
T Consensus       157 ~~~~~~~  163 (164)
T cd04162         157 LLSQLIN  163 (164)
T ss_pred             HHHHHhc
Confidence            9998764

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=7.6e-28  Score=185.62  Aligned_cols=165  Identities=24%  Similarity=0.348  Sum_probs=145.4

Q ss_pred             ccceeeeEEEecCceEEE-EE-EeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI-TF-STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk-~~-~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+|++++|++|+|| ++ .++..+.|...|.||++.++....+..++..+.+++|||+|++.+..++..+++.+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            345678999999999999 44 4788899999999999999988888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +++|||++++.+|..+..|+..+.+...+.|++++|||+|+.+ +.+..+. ..+++..++.++++||++|.|++++|..
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~~f~~  162 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD-RQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKPFLW  162 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999999987777899999999999854 3444444 4577778889999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +++.+....
T Consensus       163 ia~~l~~~p  171 (215)
T PTZ00132        163 LARRLTNDP  171 (215)
T ss_pred             HHHHHhhcc
Confidence            999887643

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=1.6e-28  Score=182.49  Aligned_cols=151  Identities=16%  Similarity=0.239  Sum_probs=122.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  ++.++..+.|. .+.||+|.++.  .+.  ...+.+++|||+|+++++.+++.+++++|++++
T Consensus         8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~   82 (168)
T cd04149           8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF   82 (168)
T ss_pred             CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            358999999999999  45666677775 47889987653  222  356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~  176 (208)
                      |||++++.+|+++..|+.++....  .+.|+++|+||+|+.+  .+..++++.++..     ..+.++++||++|.|+++
T Consensus        83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            999999999999988887776532  3789999999999854  3566776665432     224789999999999999


Q ss_pred             HHHHHHH
Q psy2518         177 IFRYLTT  183 (208)
Q Consensus       177 ~f~~i~~  183 (208)
                      +|++|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.95  E-value=1.2e-27  Score=182.23  Aligned_cols=157  Identities=24%  Similarity=0.332  Sum_probs=137.0

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|+.++||  ++.++..+.|...+.+|++ ++..+.+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            789999999999  5788889999999999986 6677788889988999999999999999989999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCC-CCCCCHHHHHHHHH-HhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLD-QSVVAPEEADLLSR-ALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ++++.+|+.+..|+..+.+...  +.|+++|+||.|+.. .+.+..++..+... ..+.+++++||++|.|++++|+.++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654  799999999999855 45666666555543 4457899999999999999999999


Q ss_pred             HHHH
Q psy2518         183 TKCL  186 (208)
Q Consensus       183 ~~~~  186 (208)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=6.9e-28  Score=181.16  Aligned_cols=152  Identities=16%  Similarity=0.258  Sum_probs=121.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|.+++||  ++.++..+.|. .+.||+|.++.  .  ++...+.+++||++|+++++.++..+++++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~--~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--T--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--E--EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            468999999999999  45666677776 57899986543  2  33456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCCCC
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--------RLMRTSVKEDIN  173 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~e~Sa~~~~~  173 (208)
                      |||+++++++..+..|+..+.+..  ++.|++|++||+|+.+.  +..++   +.+..++        .+++|||++|+|
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~~g~g  165 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAE---ITDKLGLHSLRQRHWYIQSTCATSGEG  165 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHH---HHHHhCccccCCCceEEEeccCCCCCC
Confidence            999999999999888877765432  37999999999999553  33333   3333333        356899999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCLS  187 (208)
Q Consensus       174 i~~~f~~i~~~~~~  187 (208)
                      |.++|+++++.+.+
T Consensus       166 v~e~~~~l~~~~~~  179 (181)
T PLN00223        166 LYEGLDWLSNNIAN  179 (181)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999988754

>cd00876 Ras Ras family

Probab=99.95  E-value=2.2e-27  Score=174.05  Aligned_cols=155  Identities=30%  Similarity=0.482  Sum_probs=141.0

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|+.++||  ++.++..+.+...+.+|.+ +...+.+.+++..+.+++||++|++.+..++..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            789999999999  4567777889999999988 7777888888889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ++++++++++..|...+.+...  ..|+++++||+|+.+.+.++.+++.++++.++++++++||+++.|++++|+.+++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988887765  89999999999997767788899999999988999999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd00154 Rab Rab family

Probab=99.95  E-value=2.5e-27  Score=172.92  Aligned_cols=155  Identities=34%  Similarity=0.545  Sum_probs=142.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  +++++..+.+...+.+|.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999  46778889999989999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |++++++++.+..|+..+.... ...|+++++||+|+........++..+++...+++++++||+++.|++++|+.++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999999998887 4799999999999975567788999999998889999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04158 ARD1 ARD1 subfamily

Probab=99.95  E-value=8e-28  Score=178.82  Aligned_cols=152  Identities=18%  Similarity=0.274  Sum_probs=125.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|..++||  ++.++..+.|.. +.||+|.++.  .  ++...+.+++|||+|++.+...+..+++++|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~--~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--T--VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--E--EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            689999999999  457777777764 8899886653  2  33356789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG------CRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++++|.++..|+..+.+...  +.|+++++||+|+..  .++.+++++++...+      +.+++|||++|.||+++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            9999999999999988875432  689999999999953  467777777664322      267899999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         179 RYLTTKCLS  187 (208)
Q Consensus       179 ~~i~~~~~~  187 (208)
                      +++++.+..
T Consensus       154 ~~l~~~~~~  162 (169)
T cd04158         154 DWLSRQLVA  162 (169)
T ss_pred             HHHHHHHhh
Confidence            999887654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd00157 Rho Rho (Ras homology) family

Probab=99.95  E-value=2.1e-27  Score=176.25  Aligned_cols=155  Identities=28%  Similarity=0.434  Sum_probs=135.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  +++++..+.|...+.||+. +.....+..++..+.+++|||+|++.+......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999  4678888888888888886 555666778899999999999999998888888899999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518         106 STIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQS-----------VVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus       106 d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~-----------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      |++++.+|... ..|+..+....++.|+++|+||+|+.+.+           .+..+++..++..+++ +|+++||++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            99999999887 56888888777789999999999986543           4567888889999988 99999999999


Q ss_pred             CHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTT  183 (208)
Q Consensus       173 ~i~~~f~~i~~  183 (208)
                      |++++|+.+++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=1.5e-27  Score=176.80  Aligned_cols=158  Identities=20%  Similarity=0.213  Sum_probs=127.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|++++|++++||  +++++..+.|.+.++++.+ + ......+++..+.+++|||+|++.+...+..+++++|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999  5788888999877665543 2 2444566788899999999999988877788899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhC-C-eEEEEecCCCCCHHHHHHH
Q psy2518         106 STIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALG-C-RLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       106 d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~-~-~~~e~Sa~~~~~i~~~f~~  180 (208)
                      |++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+..  .+++...++..++ . ++++|||++|.|++++|+.
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            999999999984 688888776668999999999999664432  2334444444443 3 8999999999999999999


Q ss_pred             HHHHHHH
Q psy2518         181 LTTKCLS  187 (208)
Q Consensus       181 i~~~~~~  187 (208)
                      +.+.++.
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.95  E-value=3.5e-27  Score=177.59  Aligned_cols=162  Identities=15%  Similarity=0.209  Sum_probs=131.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      -+||+++|+.++||  ++.++..+.|... .||.|.+.....+.. ++..+.+++|||+|++++..++..+++++|++++
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            58999999999999  4677778888754 688887776666655 4577899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--h----CCeEEEEecCCCCCHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA--L----GCRLMRTSVKEDINVN  175 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~----~~~~~e~Sa~~~~~i~  175 (208)
                      |||++++.+++.+..|+..+.+...  +.|+++|+||+|+.+  .+..++...+...  .    +++++++||++|.|++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~  159 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ  159 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence            9999999999999889888776543  799999999999853  3455555544431  1    2468899999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy2518         176 SIFRYLTTKCLSELRQ  191 (208)
Q Consensus       176 ~~f~~i~~~~~~~~~~  191 (208)
                      ++|+.+++.+.+.++.
T Consensus       160 ~l~~~l~~~l~~~~~~  175 (183)
T cd04152         160 EGLEKLYEMILKRRKM  175 (183)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999988765543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=1.1e-27  Score=176.45  Aligned_cols=149  Identities=15%  Similarity=0.244  Sum_probs=117.3

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|..++||  ++.++..+.|. .+.||+|.++.  .+.  ...+.+++|||+|++++..++..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            4899999999999  46777678887 47899986653  233  35688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHH-HHHHHH----HhCCeEEEEecCCCCCHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEE-ADLLSR----ALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~----~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      |++++.+|+.+.+|+..+....  .+.|+++++||+|+.+.  ...++ ...+..    ..++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            9999999999988877765432  26899999999999542  23333 232221    123357899999999999999


Q ss_pred             HHHHH
Q psy2518         179 RYLTT  183 (208)
Q Consensus       179 ~~i~~  183 (208)
                      +++.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            98864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=4.6e-28  Score=181.17  Aligned_cols=153  Identities=15%  Similarity=0.208  Sum_probs=120.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  ++.++..+.|. .+.||+|.++..  +..  ..+.+++|||+|++++..++..+++++|++++
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            368999999999999  45667677775 478999876542  333  45789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |||++++++++....|+..+.+..  .+.|++||+||+|+.+.  .+.++......     ...+.++++||++|.|+++
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            999999999999988888775432  37899999999999543  23333332221     1223577999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      +|+++.+.+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999987764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PLN00023 GTP-binding protein; Provisional

Probab=99.95  E-value=1.3e-27  Score=190.89  Aligned_cols=138  Identities=14%  Similarity=0.190  Sum_probs=121.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-------------CeEEEEEEEeCCChhhhc
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-------------GEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~g~~~~~   88 (208)
                      ..+.+||+++|++++||  ++.++..+.|...+.+|+|.++..+.+.++             ++.+.++||||+|+++|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            45679999999999999  467888999999999999999888878775             357899999999999999


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-------------CCCCEEEEEeCCCCCCCC---C---CCH
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-------------GEIPTVLVQNKIDLLDQS---V---VAP  149 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~piivvgnK~Dl~~~~---~---v~~  149 (208)
                      .++..++++++++|+|||++++.||+++..|+..+....             .++|++|||||+||.+++   .   +..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            999999999999999999999999999999999998763             148999999999996542   3   368


Q ss_pred             HHHHHHHHHhCC
Q psy2518         150 EEADLLSRALGC  161 (208)
Q Consensus       150 ~~~~~~~~~~~~  161 (208)
                      ++++++|+++++
T Consensus       178 e~a~~~A~~~g~  189 (334)
T PLN00023        178 DAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHcCC
Confidence            999999999875

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=7.8e-27  Score=174.98  Aligned_cols=162  Identities=25%  Similarity=0.353  Sum_probs=142.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      .||+++|..|+||  ++.++....|...+.||.+..+ ...+.+++..+.+++|||+|++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999  4677778888888889887444 567788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |+++..+|+.+..|+..+.+...  +.|+++|+||+|+...+.+..++...+++.++.+++++||+++.|+.++|.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877543  6899999999999776777777888888888899999999999999999999999


Q ss_pred             HHHHHhh
Q psy2518         184 KCLSELR  190 (208)
Q Consensus       184 ~~~~~~~  190 (208)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            8876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=5.7e-27  Score=176.30  Aligned_cols=157  Identities=12%  Similarity=0.194  Sum_probs=121.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|+.++||  ++.++..+.|.. +.||+|.++.  .+.  ...+.+++|||+|+++++.++..+++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            358999999999999  456666777865 7789986653  333  356889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |||++++++|.....|+..+.+..  .+.|+++|+||+|+.+  ....++......     ...+.++++||++|.|+++
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            999999999999887777765432  3689999999999854  233333322211     1123567999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2518         177 IFRYLTTKCLSEL  189 (208)
Q Consensus       177 ~f~~i~~~~~~~~  189 (208)
                      +|+++.+.+.+++
T Consensus       169 ~~~~l~~~i~~~~  181 (182)
T PTZ00133        169 GLDWLSANIKKSM  181 (182)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999998876543

>cd04154 Arl2 Arl2 subfamily

Probab=99.94  E-value=1.8e-26  Score=172.12  Aligned_cols=154  Identities=15%  Similarity=0.144  Sum_probs=122.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .-...+||+++|..++||  +++++..+ +...+.||+|..  ...+.++  .+.+.+|||+|++.++.++..+++++|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            345568999999999999  35555555 445678888744  3445554  4779999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDIN  173 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~  173 (208)
                      +++|||.+++.+|.+...|+..+.+..  .+.|+++|+||+|+.+.  ...+++..+..     ..+++++++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  162 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAVTGEG  162 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence            999999999999999988888775432  37999999999999553  34555555543     2356899999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         174 VNSIFRYLTT  183 (208)
Q Consensus       174 i~~~f~~i~~  183 (208)
                      ++++|+++++
T Consensus       163 i~~l~~~l~~  172 (173)
T cd04154         163 LLQGIDWLVD  172 (173)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.93  E-value=1.1e-25  Score=168.19  Aligned_cols=151  Identities=15%  Similarity=0.232  Sum_probs=119.5

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|.+++||  ++.++..+.|.. +.||+|.++.  .+.+  ..+.+.+|||+|++.+...+..+++++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            468999999999999  466777788875 6788886643  2333  35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHH-HHHHH----HHhCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEE-ADLLS----RALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~-~~~~~----~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |||.++++++.....|+..+.+...  +.|+++++||+|+.+  ..+.++ ...+.    +..++++++|||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999999988887777765432  689999999999854  233333 23322    22345789999999999999


Q ss_pred             HHHHHHH
Q psy2518         177 IFRYLTT  183 (208)
Q Consensus       177 ~f~~i~~  183 (208)
                      +|+++.+
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04157 Arl6 Arl6 subfamily

Probab=99.93  E-value=1.9e-25  Score=164.32  Aligned_cols=149  Identities=13%  Similarity=0.184  Sum_probs=115.8

Q ss_pred             eEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +|+++|+.++||  ++.++..+. +...+.||+|..+.  .+  ....+.+++|||+|++++..++..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SF--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EE--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999  456666665 46778899985432  22  345678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |.+++.+|..+..|+..+.+..    .+.|+++|+||+|+.+..  ..++......     ...++++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999998888888776542    279999999999985432  2232222211     1123689999999999999


Q ss_pred             HHHHHHH
Q psy2518         177 IFRYLTT  183 (208)
Q Consensus       177 ~f~~i~~  183 (208)
                      +|+++.+
T Consensus       155 ~~~~l~~  161 (162)
T cd04157         155 GVQWLQA  161 (162)
T ss_pred             HHHHHhc
Confidence            9999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.93  E-value=6e-26  Score=168.47  Aligned_cols=148  Identities=16%  Similarity=0.199  Sum_probs=116.9

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      +|+++|.+++||  +++++. +.|...+.||+|..  ...+..  ..+.+++||++|++.++.++..+++++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~-~~~~~~~~~t~g~~--~~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQ-GEIPKKVAPTVGFT--PTKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHh-CCCCccccCcccce--EEEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            478999999999  344444 44888899999854  334444  45779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHH------HHHHHHhC--CeEEEEecCCC-----
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEA------DLLSRALG--CRLMRTSVKED-----  171 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~------~~~~~~~~--~~~~e~Sa~~~-----  171 (208)
                      ++++.+|+++..|+..+.+...  +.|+++|+||+|+.+.+.  .++.      ..++++.+  +.+++|||++|     
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~  153 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI  153 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence            9999999999999998876543  789999999999965432  2221      22332333  46788999998     


Q ss_pred             -CCHHHHHHHHHH
Q psy2518         172 -INVNSIFRYLTT  183 (208)
Q Consensus       172 -~~i~~~f~~i~~  183 (208)
                       .|+.+.|++|..
T Consensus       154 ~~g~~~~~~wl~~  166 (167)
T cd04161         154 DPSIVEGLRWLLA  166 (167)
T ss_pred             ccCHHHHHHHHhc
Confidence             899999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.92  E-value=4.9e-25  Score=161.96  Aligned_cols=149  Identities=16%  Similarity=0.237  Sum_probs=116.8

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      +|+++|.+++||  +++++..+.|.. +.||++.++  ..+.. +..+.+.+|||+|++.+...+..+++++|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~--~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNV--EMLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcce--EEEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            589999999999  467777887764 468887554  33333 346789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH------HHhCCeEEEEecCCCCCHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS------RALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      .+++.++..+..|+..+.+..  .+.|+++|+||+|+...  ...++.....      ...++++++|||++|.|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            999999999988888876543  37999999999998542  2333333221      1223478999999999999999


Q ss_pred             HHHHH
Q psy2518         179 RYLTT  183 (208)
Q Consensus       179 ~~i~~  183 (208)
                      +.+.+
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            98864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.92  E-value=2.2e-25  Score=163.74  Aligned_cols=148  Identities=14%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|..++||  ++.++..+.+. .+.||++.++.  .  +++..+.+++|||+|++.+..++..+++++|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--T--VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--E--EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            689999999999  45666566665 45788876543  2  33356789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++++.++.....|+..+.+..  .+.|+++|+||+|+.+..  ..++......     ..+.+++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            999998887766665554322  278999999999985422  2233222111     1234699999999999999999


Q ss_pred             HHHH
Q psy2518         180 YLTT  183 (208)
Q Consensus       180 ~i~~  183 (208)
                      ++++
T Consensus       154 ~l~~  157 (158)
T cd04151         154 WLVN  157 (158)
T ss_pred             HHhc
Confidence            9864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.92  E-value=1.4e-24  Score=164.11  Aligned_cols=154  Identities=18%  Similarity=0.258  Sum_probs=124.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.+.+|++++|.+++||  ++.++..+.+ ..+.||++..  ...+.+++  +.+.+||++|++.+...+..+++.+|++
T Consensus        16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~--~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          16 YNKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPT--SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcc--eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            35679999999999999  4566666666 4578888754  34455554  5689999999999988899999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------hCCeE
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA----------------LGCRL  163 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~----------------~~~~~  163 (208)
                      ++|+|.+++.+|.....|+..+.+...  +.|+++++||+|+..  .+..++.+++...                ..+++
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV  168 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence            999999999999988888888776443  699999999999843  5667777766643                12468


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ++|||++|.|++++|+++.+.
T Consensus       169 ~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         169 FMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EEeEecCCCChHHHHHHHHhh
Confidence            999999999999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.91  E-value=1.2e-24  Score=159.62  Aligned_cols=148  Identities=17%  Similarity=0.222  Sum_probs=116.9

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|..++||  ++.++..+. ...+.+|++....  .+.++  .+.+.+||++|++.+..++..+++++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            789999999999  456666665 4567788875543  33333  5779999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++++++.....|+..+.+...  ..|+++++||+|+....  ..++..+....     ..++++++||++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            9999999999888888766543  79999999999986533  33333333322     235899999999999999999


Q ss_pred             HHHH
Q psy2518         180 YLTT  183 (208)
Q Consensus       180 ~i~~  183 (208)
                      .+..
T Consensus       154 ~l~~  157 (158)
T cd00878         154 WLLQ  157 (158)
T ss_pred             HHhh
Confidence            9875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0096|consensus

Probab=99.91  E-value=6.9e-25  Score=159.46  Aligned_cols=164  Identities=21%  Similarity=0.314  Sum_probs=145.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .-.+|++++|+.|.||  ...+...+.|+.+|.+|+|++.+...+.-+...+++..|||+|+|.+..+...+|-.+.+++
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4589999999999999  46888899999999999999988887777777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ++||++.+..+.++..|...+.+.+.++||+++|||.|..+ +.+ ......+-+..+++|+++||+++.|.+..|.+++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccc-ccc-ccccceeeecccceeEEeecccccccccchHHHh
Confidence            99999999999999999999999999999999999999855 332 2333446677789999999999999999999999


Q ss_pred             HHHHHHhh
Q psy2518         183 TKCLSELR  190 (208)
Q Consensus       183 ~~~~~~~~  190 (208)
                      +++.....
T Consensus       166 rKl~G~p~  173 (216)
T KOG0096|consen  166 RKLTGDPS  173 (216)
T ss_pred             hhhcCCCC
Confidence            99865443

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.91  E-value=4.8e-24  Score=157.75  Aligned_cols=149  Identities=22%  Similarity=0.322  Sum_probs=116.1

Q ss_pred             eEEEecCceEEE--EEEeeec------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          29 KAYYRGAQACVI--TFSTIDR------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      +|+++|..++||  +++++..      +.+...+.||++.++.  .+.++  ...+.+|||+|++.+..++..+++.+|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999  2344332      2234567788876654  33444  5679999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-------hCCeEEEEecCCC
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-------LGCRLMRTSVKED  171 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~e~Sa~~~  171 (208)
                      +++|+|.++++++.....|+..+.+...  +.|+++++||+|+..  ....++...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            9999999999999998888888766532  799999999999854  3444555544433       2358999999999


Q ss_pred             CCHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTT  183 (208)
Q Consensus       172 ~~i~~~f~~i~~  183 (208)
                      .|++++|+++.+
T Consensus       155 ~gv~e~~~~l~~  166 (167)
T cd04160         155 TGVREGIEWLVE  166 (167)
T ss_pred             cCHHHHHHHHhc
Confidence            999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.90  E-value=6.8e-23  Score=158.15  Aligned_cols=165  Identities=28%  Similarity=0.371  Sum_probs=138.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|+.|+||  ++.++..+.|.+.+.+|++..+........+..+++.+|||+|+++++.++..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            349999999999999  468899999999999999988888888887779999999999999999999999999999999


Q ss_pred             EEeCCChh-hHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHh---CCeEEEE
Q psy2518         104 TFSTIDRD-SFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQS------------VVAPEEADLLSRAL---GCRLMRT  166 (208)
Q Consensus       104 v~d~~~~~-s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~---~~~~~e~  166 (208)
                      |||.++.. +++....|...+....+ ..|+++++||+|+...+            ....+.....+...   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            99999954 55556899999988875 79999999999997653            33333333333333   2358999


Q ss_pred             ecC--CCCCHHHHHHHHHHHHHHHhh
Q psy2518         167 SVK--EDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       167 Sa~--~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      ||+  ++.++.++|..+...+.....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~~  189 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEIE  189 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence            999  999999999999999876543

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.90  E-value=2e-23  Score=157.29  Aligned_cols=154  Identities=14%  Similarity=0.212  Sum_probs=120.0

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.+.+||+++|..++||  +++++..+.|. .+.||.+...  ..+.++  .+++.+||++|++.++.++..+++++|++
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i   88 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI   88 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            35569999999999999  45666666664 4567776432  233333  46789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEe
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA------------LGCRLMRTS  167 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~e~S  167 (208)
                      ++|+|+++++++.....|+..+.+..  .+.|+++|+||+|+..  .++.++..+....            ....+++||
T Consensus        89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S  166 (184)
T smart00178       89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS  166 (184)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence            99999999999999888888776542  3789999999999843  4556655543311            123689999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTK  184 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~  184 (208)
                      |++|.|++++++++.++
T Consensus       167 a~~~~g~~~~~~wl~~~  183 (184)
T smart00178      167 VVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             cccCCChHHHHHHHHhh
Confidence            99999999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG1673|consensus

Probab=99.90  E-value=2.9e-23  Score=146.40  Aligned_cols=170  Identities=16%  Similarity=0.241  Sum_probs=146.8

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR   96 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   96 (208)
                      .+..+-...+||-++|++.+||  +...+.++.+++++..|.|+.+..+++.+.|..+.+.|||.+|++++..+.+...+
T Consensus        12 ~~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~   91 (205)
T KOG1673|consen   12 IPAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACK   91 (205)
T ss_pred             CcccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeec
Confidence            3344556789999999999999  45678899999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-----CCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ-----SVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ++-+++|+||++.+.+++.+..|+.+........-.|+||+|.|+--.     ..--..+++.+|+.++...|.||+..+
T Consensus        92 dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~s  171 (205)
T KOG1673|consen   92 DSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHS  171 (205)
T ss_pred             CcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccc
Confidence            999999999999999999999999998877775556778999996211     111234567788888999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCLSE  188 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~~~  188 (208)
                      .||+.+|.-+.-++++.
T Consensus       172 INv~KIFK~vlAklFnL  188 (205)
T KOG1673|consen  172 INVQKIFKIVLAKLFNL  188 (205)
T ss_pred             ccHHHHHHHHHHHHhCC
Confidence            99999999998888764

>cd01890 LepA LepA subfamily

Probab=99.90  E-value=4.5e-23  Score=154.28  Aligned_cols=152  Identities=14%  Similarity=0.159  Sum_probs=113.6

Q ss_pred             eEEEecCceEEE--EEEeeecC-------ccccccccc------cccceeeEEEEE-----CCeEEEEEEEeCCChhhhc
Q psy2518          29 KAYYRGAQACVI--TFSTIDRD-------SFEAAHSWK------MKVSIKRTIKEC-----EGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~-------~f~~~~~~t------~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~~~~   88 (208)
                      +|.++|..++||  ++.++...       .+...+.+|      .|+.+..+.+..     ++..+.+++|||+|++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999  34444432       233344443      344554444333     6778999999999999999


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---eEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---RLMR  165 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~~~e  165 (208)
                      ..+..+++.+|++++|||+++..+++....|.....   .+.|+++|+||+|+.+.+  ..+...++++.+++   .+++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~  156 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAIL  156 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEE
Confidence            999999999999999999999877777666654332   268999999999985422  23334566666676   4899


Q ss_pred             EecCCCCCHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +||++|.|++++|+.+.+.+
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         157 VSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             eeccCCCCHHHHHHHHHhhC
Confidence            99999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.89  E-value=3.7e-23  Score=150.91  Aligned_cols=149  Identities=22%  Similarity=0.275  Sum_probs=118.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      .|.++|.+++||  +++++....|...+.||++.++..  +..+  .+.+.+||++|++.+..++..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            378999999999  568888899999999999876643  3333  3789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++++.++.....|+..+....  .+.|+++|+||+|+.+...  .++.....     ...+.+++++||++|.|++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999999988877777765533  2789999999999855322  22222111     11235789999999999999999


Q ss_pred             HHHH
Q psy2518         180 YLTT  183 (208)
Q Consensus       180 ~i~~  183 (208)
                      .+.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.89  E-value=9.7e-23  Score=152.35  Aligned_cols=155  Identities=19%  Similarity=0.278  Sum_probs=122.8

Q ss_pred             cceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ..+.+||+++|..++|| + +.++..+.+ ..+.||.|...  ..+.++  .+.+.+||.+|+..++.+|+.+++++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~-~~~~pT~g~~~--~~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEI-SETIPTIGFNI--EEIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSE-EEEEEESSEEE--EEEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhccc-cccCccccccc--ceeeeC--cEEEEEEeccccccccccceeecccccee
Confidence            36789999999999999 3 444444443 45889998543  344444  45689999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------hCCeEEEEecCCCCC
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA------LGCRLMRTSVKEDIN  173 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------~~~~~~e~Sa~~~~~  173 (208)
                      ++|+|.++++.+......+..+.....  +.|+++++||+|+.+  ..+.++.......      ..+.++.|||++|.|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999999998888877766533  799999999999854  4566666654322      234689999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKC  185 (208)
Q Consensus       174 i~~~f~~i~~~~  185 (208)
                      +.+.|++|.+.+
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>KOG4423|consensus

Probab=99.88  E-value=4.3e-25  Score=160.06  Aligned_cols=166  Identities=25%  Similarity=0.370  Sum_probs=145.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe-EEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      ..+++|+.++|+.++||  +..|+....|...|..|+|+++..+.+..+.. .+++++||.+||++|..+...||+.+++
T Consensus        22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~  101 (229)
T KOG4423|consen   22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG  101 (229)
T ss_pred             hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence            46799999999999999  46888899999999999999999999988654 5689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVA-PEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~-~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      ..+|||+++...|+...+|.+++.....     +.|+++.+||||+.+..... .....++++++|+ ..+|+|+|.+.|
T Consensus       102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn  181 (229)
T KOG4423|consen  102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN  181 (229)
T ss_pred             eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence            9999999999999999999998854432     68889999999986543222 3667788999998 899999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2518         174 VNSIFRYLTTKCLSEL  189 (208)
Q Consensus       174 i~~~f~~i~~~~~~~~  189 (208)
                      +.|+-..+++.++..-
T Consensus       182 i~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  182 IPEAQRELVEKILVND  197 (229)
T ss_pred             hhHHHHHHHHHHHhhc
Confidence            9999999999887654

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.88  E-value=1.3e-22  Score=146.42  Aligned_cols=132  Identities=18%  Similarity=0.231  Sum_probs=101.2

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh-----hhhcchhHhhhcCCcEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----EEFDAITKAYYRGAQAC  101 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----~~~~~~~~~~~~~~d~i  101 (208)
                      ||+++|++++||  +++++..+.+  .+.+|+++++.       +     .+|||+|+     +.+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            899999999999  4677766665  35666654432       1     68999997     33444433 58999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.++.. ..|....     ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+.
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  139 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDY  139 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999998865 3454322     249999999999864 44566777888888877 8999999999999999998


Q ss_pred             HH
Q psy2518         181 LT  182 (208)
Q Consensus       181 i~  182 (208)
                      +.
T Consensus       140 l~  141 (142)
T TIGR02528       140 LN  141 (142)
T ss_pred             Hh
Confidence            74

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0073|consensus

Probab=99.87  E-value=2.8e-21  Score=137.55  Aligned_cols=157  Identities=17%  Similarity=0.185  Sum_probs=124.5

Q ss_pred             ceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          25 DAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      .+.+.|.++|-.++|| ++..-+.+.-.+...||.|.+  .++  +..+.+++++||.+||...++.|+.||..+|++|+
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~--Ikt--l~~~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQ--IKT--LEYKGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCCCccccCCcccee--eEE--EEecceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            4589999999999999 333223344467788888743  333  34466779999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHH------HHHHHHHhCCeEEEEecCCCCCHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEE------ADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~------~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      |+|.+|+..++.....+..+.....  ..|+++++||.|+..  .+..++      .+.+++..+++.+-|||.+|+++.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            9999999999988777766655433  689999999999953  233332      234556778899999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      +.|.++...+..
T Consensus       168 ~gidWL~~~l~~  179 (185)
T KOG0073|consen  168 EGIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>cd04155 Arl3 Arl3 subfamily

Probab=99.87  E-value=9.9e-22  Score=146.20  Aligned_cols=149  Identities=16%  Similarity=0.287  Sum_probs=112.9

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+|++++|.+|+|| + +.++.+..+ ..+.||.|..+  ..+..++  ..+.+||++|+..+...+..+++.+|+++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            4479999999999999 3 444444444 45778887443  3444554  56899999999998888899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--------eEEEEecCCCC
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--------RLMRTSVKEDI  172 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~e~Sa~~~~  172 (208)
                      +|+|.++..++.....|+..+.+...  ..|+++++||+|+.+..  ..+   .+....++        +++++||++|.
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~Sa~~~~  161 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQACSAKTGE  161 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEeECCCCC
Confidence            99999999999888777766654432  79999999999985422  222   23333332        47899999999


Q ss_pred             CHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTT  183 (208)
Q Consensus       173 ~i~~~f~~i~~  183 (208)
                      |++++|+++++
T Consensus       162 gi~~~~~~l~~  172 (173)
T cd04155         162 GLQEGMNWVCK  172 (173)
T ss_pred             CHHHHHHHHhc
Confidence            99999999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.87  E-value=1.1e-21  Score=145.12  Aligned_cols=151  Identities=16%  Similarity=0.100  Sum_probs=104.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccc-cc-cccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHhhh
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAA-HS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKAYY   95 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~-~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~   95 (208)
                      +|+++|.+++||  +++++..+.+... ++ +|.+  .....  .....+.+++|||+|+....         .......
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~--~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   77 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKS--LFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA   77 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccc--eeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence            689999999999  4666667666432 21 2322  22222  22245789999999974211         0011112


Q ss_pred             cCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          96 RGAQACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      ..+|++++|+|++++.++  +....|+..+.+...+.|+++|+||+|+...+.+..  ..++++..+.++++|||++|.|
T Consensus        78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g  155 (168)
T cd01897          78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG  155 (168)
T ss_pred             hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence            346899999999987654  556678888876555799999999999965443332  4555555567899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKC  185 (208)
Q Consensus       174 i~~~f~~i~~~~  185 (208)
                      ++++|+++.+.+
T Consensus       156 i~~l~~~l~~~~  167 (168)
T cd01897         156 VDEVKNKACELL  167 (168)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.87  E-value=2.7e-21  Score=140.52  Aligned_cols=154  Identities=23%  Similarity=0.315  Sum_probs=127.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|.+++||  +++++..+.+...+.++.+.++....+..++..+.+.+||++|+..+..++..+.+.+++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999  4566667778888888998888887788888888999999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         105 FSTIDR-DSFEAAH-SWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       105 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      +|+... .++.... .|...+.+... +.|+++++||+|+...+ ...+....+......+++++||++|.|+.++|+.+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999887 7777664 77777776666 78999999999996543 34444444444445689999999999999999875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0070|consensus

Probab=99.86  E-value=1e-20  Score=137.84  Aligned_cols=156  Identities=15%  Similarity=0.221  Sum_probs=123.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ....+|+++|-.++||  .+.++..+.+... .||+|....  .  +..+++.+.+||.+|+++++.+|+.|+++.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE--~--v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVE--T--VEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccccee--E--EEEcceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            3468999999999999  3455556666555 999984433  2  3334888999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~  175 (208)
                      +|.|.+|++-+...+.-+..+..+..  +.|+++.+||.|++.  ..+..+..+....     ....+..|+|.+|+|+.
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            99999999999998877777776665  899999999999955  3444444333322     33467899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      |.++++.+.+..
T Consensus       168 egl~wl~~~~~~  179 (181)
T KOG0070|consen  168 EGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHhc
Confidence            999999888753

>cd04171 SelB SelB subfamily

Probab=99.85  E-value=4.4e-21  Score=141.10  Aligned_cols=149  Identities=16%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             eEEEecCceEEE--EEEeeec---CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~---~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      -|.++|..++||  +++++..   +.+.+++.++...+.....+.+.+ ...+++|||||++++......+++.+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            478999999999  3455543   445544444444444444555542 3579999999999987767778899999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHH---hCCeEEEEecCCCCCHH
Q psy2518         104 TFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRA---LGCRLMRTSVKEDINVN  175 (208)
Q Consensus       104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~  175 (208)
                      |+|+++   +++++.+.    .+. .....|+++++||+|+.++.  ....++..+..+.   .+.+++++||++|.|++
T Consensus        81 V~d~~~~~~~~~~~~~~----~~~-~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  155 (164)
T cd04171          81 VVAADEGIMPQTREHLE----ILE-LLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE  155 (164)
T ss_pred             EEECCCCccHhHHHHHH----HHH-HhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence            999987   44444332    111 11234999999999995432  1112333333333   35689999999999999


Q ss_pred             HHHHHHHH
Q psy2518         176 SIFRYLTT  183 (208)
Q Consensus       176 ~~f~~i~~  183 (208)
                      ++|+.+.+
T Consensus       156 ~l~~~l~~  163 (164)
T cd04171         156 ELKEYLDE  163 (164)
T ss_pred             HHHHHHhh
Confidence            99998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01898 Obg Obg subfamily

Probab=99.85  E-value=8.4e-21  Score=140.67  Aligned_cols=152  Identities=16%  Similarity=0.145  Sum_probs=104.2

Q ss_pred             eEEEecCceEEE--EEEeeecCcccc-c-cccccccceeeEEEEECCeEEEEEEEeCCChh----hhcchhHhh---hcC
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEA-A-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----EFDAITKAY---YRG   97 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~-~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----~~~~~~~~~---~~~   97 (208)
                      .|+++|..++||  +++++....... . ..+|.  +.....+.+++ ...+.+|||||..    ....+...+   ++.
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~--~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCcccc--CCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            478999999999  344444333211 1 11222  11112223333 2478999999963    222333444   346


Q ss_pred             CcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCC
Q psy2518          98 AQACVITFSTIDR-DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDI  172 (208)
Q Consensus        98 ~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~  172 (208)
                      +|++++|+|++++ ++++.+..|...+....+   ..|+++|+||+|+.+...+ .+....+... .+.+++++||+++.
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE  157 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence            9999999999999 799999999888876642   6899999999999664443 3444445555 36789999999999


Q ss_pred             CHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTK  184 (208)
Q Consensus       173 ~i~~~f~~i~~~  184 (208)
                      |++++|+.+.+.
T Consensus       158 gi~~l~~~i~~~  169 (170)
T cd01898         158 GLDELLRKLAEL  169 (170)
T ss_pred             CHHHHHHHHHhh
Confidence            999999998865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.83  E-value=1.3e-20  Score=143.08  Aligned_cols=147  Identities=13%  Similarity=0.092  Sum_probs=106.4

Q ss_pred             eeeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~   90 (208)
                      ..+|+++|.+++||  ++.++..  +.|...+            .++.|..+..+...++.+.+.+++|||+|+++|...
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~   81 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE   81 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence            45899999999999  4565655  5665543            345666677777777777889999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HhCCe
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV-VAPEEADLLSR-------ALGCR  162 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~-v~~~~~~~~~~-------~~~~~  162 (208)
                      ...+++.+|++++|||+++.. +.....|+.....  .+.|+++|+||+|+...+. ...++..++..       ..+++
T Consensus        82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            999999999999999998742 3333344444332  2689999999999954322 11233344432       23678


Q ss_pred             EEEEecCCCCCHHH
Q psy2518         163 LMRTSVKEDINVNS  176 (208)
Q Consensus       163 ~~e~Sa~~~~~i~~  176 (208)
                      ++++||++|.|+.+
T Consensus       159 iv~~Sa~~g~~~~~  172 (194)
T cd01891         159 VLYASAKNGWASLN  172 (194)
T ss_pred             EEEeehhccccccc
Confidence            99999999977643

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>KOG3883|consensus

Probab=99.83  E-value=5.7e-20  Score=129.54  Aligned_cols=167  Identities=19%  Similarity=0.278  Sum_probs=137.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhh-cchhHhhhcCC
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEF-DAITKAYYRGA   98 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-~~~~~~~~~~~   98 (208)
                      .+.-|++++|-.++||  .+.++..+  .-..++.||+. |++.-.+.. .|..-.+.++||+|...+ ..+-+.|++-+
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a   85 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA   85 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence            4578999999999999  23333333  33456889997 666666655 466678999999998777 45677889999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |++++|||..+++||+.+......+.+...  ..||+++|||+|+.+++++..+-+..||+.-.++.+|++|.+...+-+
T Consensus        86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e  165 (198)
T KOG3883|consen   86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE  165 (198)
T ss_pred             ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence            999999999999999887555555555544  799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy2518         177 IFRYLTTKCLSELRQQ  192 (208)
Q Consensus       177 ~f~~i~~~~~~~~~~~  192 (208)
                      .|..+...+...+.+.
T Consensus       166 pf~~l~~rl~~pqskS  181 (198)
T KOG3883|consen  166 PFTYLASRLHQPQSKS  181 (198)
T ss_pred             HHHHHHHhccCCcccc
Confidence            9999999987665543

>cd01878 HflX HflX subfamily

Probab=99.83  E-value=2.5e-20  Score=142.49  Aligned_cols=151  Identities=18%  Similarity=0.130  Sum_probs=107.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCChhh---------hcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE---------FDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~---------~~~~~   91 (208)
                      +..++|+++|..|+||  +++++....+...  +.+|+.  .....+.+++. ..+.+|||+|...         +... 
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-  114 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-  114 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-
Confidence            5578999999999999  3455555554322  344543  33444445443 2689999999722         2221 


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                      ...+..+|++++|+|.+++.++.....|...+..... +.|+++|+||+|+......     ...+...+.+++++||++
T Consensus       115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~  189 (204)
T cd01878         115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKT  189 (204)
T ss_pred             HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCC
Confidence            1236789999999999999988887777776655443 6899999999998553221     134444566899999999


Q ss_pred             CCCHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTK  184 (208)
Q Consensus       171 ~~~i~~~f~~i~~~  184 (208)
                      |.|++++|+.+.+.
T Consensus       190 ~~gi~~l~~~L~~~  203 (204)
T cd01878         190 GEGLDELLEAIEEL  203 (204)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.83  E-value=8e-20  Score=133.66  Aligned_cols=145  Identities=14%  Similarity=0.164  Sum_probs=107.8

Q ss_pred             EecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhhc--CCcEE
Q psy2518          32 YRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYYR--GAQAC  101 (208)
Q Consensus        32 ~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~~--~~d~i  101 (208)
                      ++|.+++||  +++++.+..+...+.++.+.+.....+.+++  ..+.+|||||++.+..      +...++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999  4566656555544555555666667777776  4689999999977654      3556664  99999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ++|+|.+++++..   .|...+.+.  +.|+++++||+|+.+...+..+ ...++..++++++++||++|.|+.++|+.+
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l  152 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLEL--GLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDAI  152 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHHc--CCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHHH
Confidence            9999999865432   344444332  6899999999999665444433 456777788999999999999999999988


Q ss_pred             HHH
Q psy2518         182 TTK  184 (208)
Q Consensus       182 ~~~  184 (208)
                      .+.
T Consensus       153 ~~~  155 (158)
T cd01879         153 AEL  155 (158)
T ss_pred             HHH
Confidence            775

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK04213 GTP-binding protein; Provisional

Probab=99.82  E-value=8.6e-21  Score=144.71  Aligned_cols=149  Identities=15%  Similarity=0.182  Sum_probs=103.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC-----------hhhhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG-----------QEEFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~~~~~~~~   91 (208)
                      ...++|+++|.+++||  +++++.++.+...+.|+.+  +....+.+.    .+.+|||+|           +++++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            3468999999999999  4677777777665666543  333334333    589999999           67777777


Q ss_pred             Hhhhc----CCcEEEEEEeCCChhhHHHHHHH------------HHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH
Q psy2518          92 KAYYR----GAQACVITFSTIDRDSFEAAHSW------------KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL  155 (208)
Q Consensus        92 ~~~~~----~~d~ii~v~d~~~~~s~~~~~~~------------~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~  155 (208)
                      ..+++    .++++++|+|.++...+  ...|            ...+..  .+.|+++|+||+|+.+.+   .+...++
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~---~~~~~~~  153 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR---DEVLDEI  153 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH---HHHHHHH
Confidence            77764    34677777776543221  0122            111221  278999999999985433   4456666


Q ss_pred             HHHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         156 SRALGC---------RLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       156 ~~~~~~---------~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +..+++         +++++||++| |++++|+.+.+.+..
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            776665         4799999999 999999999987643

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.82  E-value=3.6e-19  Score=127.92  Aligned_cols=150  Identities=33%  Similarity=0.596  Sum_probs=117.5

Q ss_pred             EecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC
Q psy2518          32 YRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI  108 (208)
Q Consensus        32 ~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~  108 (208)
                      ++|..++||  +++++..... ...+.+|. .++........+....+.+||++|+..+......+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999  3455555555 56667777 7888888888888899999999999988888888999999999999999


Q ss_pred             ChhhHHHHHHHH--HHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         109 DRDSFEAAHSWK--MKVENECGEIPTVLVQNKIDLLDQSVVAPEE-ADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       109 ~~~s~~~~~~~~--~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ++.++.....|.  ..........|+++++||+|+.......... ........+.+++++||+.+.|++++++++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999999887772  2222333389999999999986543332222 3344555567999999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=5.1e-19  Score=154.01  Aligned_cols=157  Identities=15%  Similarity=0.142  Sum_probs=117.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecC-------cccccccc------ccccceeeEEEEE-----CCeEEEEEEEeCCChh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRD-------SFEAAHSW------KMKVSIKRTIKEC-----EGEEVRLMLWDTAGQE   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~-------~f~~~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~   85 (208)
                      ...+++++|..++||  +..+++..       .+...+..      +.|+.+..+.+.+     ++..+.+++|||||++
T Consensus         2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~   81 (595)
T TIGR01393         2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV   81 (595)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence            467899999999999  33444332       23333332      3366665554443     5778999999999999


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---R  162 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~  162 (208)
                      .|...+..+++.+|++++|+|+++..+++....|.....   .+.|+++|+||+|+.+.  ...+...+++..+++   .
T Consensus        82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~--~~~~~~~el~~~lg~~~~~  156 (595)
T TIGR01393        82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSA--DPERVKKEIEEVIGLDASE  156 (595)
T ss_pred             HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCcc--CHHHHHHHHHHHhCCCcce
Confidence            999999999999999999999999877777666654443   26899999999998542  123334556666666   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         163 LMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       163 ~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      ++++||++|.|++++|+.+++.+..
T Consensus       157 vi~vSAktG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       157 AILASAKTGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             EEEeeccCCCCHHHHHHHHHHhCCC
Confidence            8999999999999999999887643

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0075|consensus

Probab=99.80  E-value=5.4e-19  Score=123.78  Aligned_cols=152  Identities=22%  Similarity=0.313  Sum_probs=121.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .....+.++|-..+||  +.+....+.|.+.-.||+|    .....++...+.+.+||.+|+.+|+++|..|++++++++
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvG----fnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv   93 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVG----FNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV   93 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhccccc----ceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence            3456788999999999  4577778899999999999    445577788899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--------CCeEEEEecCCCC
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--------GCRLMRTSVKEDI  172 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--------~~~~~e~Sa~~~~  172 (208)
                      +|+|..+++.+.....-+..+.....  .+|++++|||.|+.+  ......   +..++        .+-+|.+||++..
T Consensus        94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~---li~rmgL~sitdREvcC~siScke~~  168 (186)
T KOG0075|consen   94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIA---LIERMGLSSITDREVCCFSISCKEKV  168 (186)
T ss_pred             EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHH---HHHHhCccccccceEEEEEEEEcCCc
Confidence            99999999888766544444433332  799999999999854  233322   22333        3458999999999


Q ss_pred             CHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKC  185 (208)
Q Consensus       173 ~i~~~f~~i~~~~  185 (208)
                      |++.+.++++++-
T Consensus       169 Nid~~~~Wli~hs  181 (186)
T KOG0075|consen  169 NIDITLDWLIEHS  181 (186)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999999998864

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.80  E-value=5.3e-19  Score=130.64  Aligned_cols=154  Identities=14%  Similarity=0.095  Sum_probs=103.8

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      .|+++|..++||  +++++..+.+...+.++...+.....+..+ +....+.+|||+|++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            388999999999  467777777776544444333333333333 24667899999999999888888999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC-HHHHHHHHH----H--hCCeEEEEecCCCCCHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA-PEEADLLSR----A--LGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~-~~~~~~~~~----~--~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      |.++....+... .+..+..  .+.|+++|+||+|+....... .+....+..    .  .+++++++||++|.|+.++|
T Consensus        82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence            998843222111 1112222  268999999999985421100 011111111    1  13589999999999999999


Q ss_pred             HHHHHHH
Q psy2518         179 RYLTTKC  185 (208)
Q Consensus       179 ~~i~~~~  185 (208)
                      +.+.+..
T Consensus       159 ~~l~~~~  165 (168)
T cd01887         159 EAILLLA  165 (168)
T ss_pred             HHHHHhh
Confidence            9998764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.80  E-value=4.3e-19  Score=151.46  Aligned_cols=157  Identities=19%  Similarity=0.134  Sum_probs=111.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh-
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT-   91 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~-   91 (208)
                      ..+||+++|..++||  +++++....+. ....++.+.+.....+.+++..+  .+|||+|.          +.|..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~--~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW--RFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE--EEEECCCccccccccchHHHHHHHHH
Confidence            468999999999999  46777666542 23445555677777788887764  79999994          4444443 


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHHH-HHHHHhCCeEEEEec
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEAD-LLSRALGCRLMRTSV  168 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~~-~~~~~~~~~~~e~Sa  168 (208)
                      ..++++||++++|+|++++.+++.+. ++..+..  .+.|+++|+||+|+.+...  ...++.. .+.....++++++||
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            24678999999999999998888764 4444433  2689999999999954211  0111111 122223468999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~~  187 (208)
                      ++|.||+++|+.+.+.+..
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887643

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.79  E-value=1e-18  Score=142.49  Aligned_cols=161  Identities=17%  Similarity=0.151  Sum_probs=113.3

Q ss_pred             cceeeeEEEecCceEEE-E-EEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHh--
Q psy2518          24 FDAITKAYYRGAQACVI-T-FSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKA--   93 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~--   93 (208)
                      ....-.|.++|..++|| + ++++...... ..|+ +|+.  ...-.+.+. ....+.+||+||...    ...+...  
T Consensus       155 lk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~--p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~fl  231 (335)
T PRK12299        155 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLH--PNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFL  231 (335)
T ss_pred             EcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeC--ceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHH
Confidence            44566899999999999 3 3443332211 1222 2332  222233332 223589999999732    1223334  


Q ss_pred             -hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q psy2518          94 -YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK  169 (208)
Q Consensus        94 -~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  169 (208)
                       .+..++++++|+|+++.++++.+..|..++..+.+   +.|+++|+||+|+.+...+..++.+.++...+.+++++||+
T Consensus       232 rhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAk  311 (335)
T PRK12299        232 KHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAV  311 (335)
T ss_pred             HHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcC
Confidence             45679999999999998899999999999887654   68999999999996655444455555666667899999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy2518         170 EDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~  187 (208)
                      ++.|++++|+.+.+.+.+
T Consensus       312 tg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        312 TGEGLDELLRALWELLEE  329 (335)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            999999999999888754

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.79  E-value=9.5e-19  Score=147.54  Aligned_cols=154  Identities=17%  Similarity=0.144  Sum_probs=116.1

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCc--cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDS--FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------   90 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------   90 (208)
                      +..+..+||+++|+.++||  +++++....  +...++. .+.++....+.+++.+  +.+|||+|...+...       
T Consensus       198 ~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pg-tTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~  274 (442)
T TIGR00450       198 EKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKG-TTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIE  274 (442)
T ss_pred             HHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCC-cEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHH
Confidence            5667789999999999999  456666553  3344433 3457777788887765  589999998544322       


Q ss_pred             -hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q psy2518          91 -TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK  169 (208)
Q Consensus        91 -~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  169 (208)
                       ...+++.+|++++|||.+++.+++..  |+..+..  .+.|+++|+||+|+.+.      +...+++.++.+++++||+
T Consensus       275 ~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak  344 (442)
T TIGR00450       275 KSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAK  344 (442)
T ss_pred             HHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEe
Confidence             24578999999999999999888765  7666543  26899999999998542      2234566677889999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q psy2518         170 EDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~~~  189 (208)
                      + .||+++|+.+.+.+.+..
T Consensus       345 ~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       345 Q-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             c-CCHHHHHHHHHHHHHHHh
Confidence            8 699999999999876543

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.79  E-value=2.2e-19  Score=125.59  Aligned_cols=112  Identities=23%  Similarity=0.387  Sum_probs=87.7

Q ss_pred             eEEEecCceEEE--EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ||+++|+.|+||  +++++....+.  ..+.++.+..+.............+++||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            799999999999  45667677776  23444445555566677788887899999999999988888889999999999


Q ss_pred             EeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518         105 FSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus       105 ~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      ||++++.||+.+   ..|+..+.+...+.|+++||||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999987   446777766566899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.78  E-value=2.4e-18  Score=141.27  Aligned_cols=149  Identities=20%  Similarity=0.180  Sum_probs=106.1

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCCh---------hhhcchhH
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ---------EEFDAITK   92 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~---------~~~~~~~~   92 (208)
                      ..++|+++|.+++||  +++++.+..+...  ..+|.  |.....+.+++. ..+.+|||+|.         +.|.+. .
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-l  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-L  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-H
Confidence            568999999999999  4666666654322  23444  556667777432 36889999997         233332 2


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ..+++||++++|+|.+++.+++.+..|...+..... +.|+++|+||+|+.+..     +..... ....+++++||++|
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~~-~~~~~~i~iSAktg  337 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERLE-EGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHHH-hCCCCEEEEEccCC
Confidence            357899999999999999888887766655555433 78999999999985422     112111 12246899999999


Q ss_pred             CCHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTK  184 (208)
Q Consensus       172 ~~i~~~f~~i~~~  184 (208)
                      .|++++++.+.+.
T Consensus       338 ~GI~eL~~~I~~~  350 (351)
T TIGR03156       338 EGLDLLLEAIAER  350 (351)
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999988754

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0071|consensus

Probab=99.77  E-value=7.9e-18  Score=117.09  Aligned_cols=154  Identities=17%  Similarity=0.224  Sum_probs=118.2

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +.++++.+|-.++|| +++.-+.-.-..+..||+|..  .+  .+..+++++++||.+|+++.+.+|+.||.++.++|||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFn--ve--tVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV   91 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFN--VE--TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV   91 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCccccccccee--EE--EEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence            467899999999999 444333444455678888833  23  3445778899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      .|..+++..++.+.-+-.+.++..  +.|+++.+||.|+++  ..+..++..+..     ....-+..+||.+|.++.|.
T Consensus        92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            999999888877655555544443  899999999999965  345555554432     22345689999999999999


Q ss_pred             HHHHHHHH
Q psy2518         178 FRYLTTKC  185 (208)
Q Consensus       178 f~~i~~~~  185 (208)
                      |.++...+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            99988764

>PRK15494 era GTPase Era; Provisional

Probab=99.77  E-value=4e-18  Score=139.67  Aligned_cols=151  Identities=17%  Similarity=0.214  Sum_probs=105.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc---cccccccccceeeEEEEECCeEEEEEEEeCCChh-hhcchhH------
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-EFDAITK------   92 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~~~~------   92 (208)
                      .+.++|+++|..++||  +++++.++.+.   +.+.+|.  +.....+..++.  ++.+|||||.. .+..+..      
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr--~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~  125 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTR--SIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCA  125 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCcc--CcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHH
Confidence            5678999999999999  46777777664   2333443  334455555554  57999999984 2222221      


Q ss_pred             -hhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEec
Q psy2518          93 -AYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSV  168 (208)
Q Consensus        93 -~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa  168 (208)
                       ..+++||++++|+|.++  +|.... .|+..+...  +.|.++|+||+|+.+.   ...++.+++...+  ..++++||
T Consensus       126 ~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSA  198 (339)
T PRK15494        126 WSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISA  198 (339)
T ss_pred             HHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEec
Confidence             34789999999999765  455553 445544433  4677889999998542   2345555555544  47999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~  186 (208)
                      ++|.|++++|+.+.+.+.
T Consensus       199 ktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        199 LSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             cCccCHHHHHHHHHHhCC
Confidence            999999999999988764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.76  E-value=1.2e-18  Score=128.14  Aligned_cols=138  Identities=15%  Similarity=0.159  Sum_probs=97.2

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh-----hhhcchhHhhhcCCcEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----EEFDAITKAYYRGAQAC  101 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----~~~~~~~~~~~~~~d~i  101 (208)
                      ||+++|..++||  ++++ +.+.+.. ..+|.++       .+++.    .+|||||.     +.+..+ ...++.+|++
T Consensus         3 ~i~~iG~~~~GKstl~~~-l~~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~i   68 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNA-LQGNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDML   68 (158)
T ss_pred             EEEEECCCCCCHHHHHHH-HcCCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEE
Confidence            799999999999  3444 3344321 2233332       22222    26999997     332222 2347899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC--eEEEEecCCCCCHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC--RLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++|+|.++.+++.  ..|+..+   ..+.|+++++||+|+.+   ...+...+++.+.++  +++++||++|.|++++|+
T Consensus        69 l~v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         69 IYVHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEEeCCCccccc--CHHHHhc---cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999999988763  3455443   23679999999999854   345667777778875  899999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         180 YLTTKCLSE  188 (208)
Q Consensus       180 ~i~~~~~~~  188 (208)
                      .+.+.+.+.
T Consensus       141 ~l~~~~~~~  149 (158)
T PRK15467        141 YLASLTKQE  149 (158)
T ss_pred             HHHHhchhh
Confidence            998876543

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.76  E-value=3.6e-18  Score=145.81  Aligned_cols=153  Identities=14%  Similarity=0.085  Sum_probs=107.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKA   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~   93 (208)
                      ....+|+++|..++||  +++++..+.+. ....|++..+.....+.+++..  +.+|||+|.+.        +......
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~  113 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEV  113 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHH
Confidence            4567999999999999  46777766543 2334444445555555566654  78999999752        3444566


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      +++.||++|+|+|.++..++.. ..|...+..  .+.|+++|+||+|+...   ..+..+.+  ..++ ..+++||++|.
T Consensus       114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~---~~~~~~~~--~~g~~~~~~iSA~~g~  185 (472)
T PRK03003        114 AMRTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERG---EADAAALW--SLGLGEPHPVSALHGR  185 (472)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCcc---chhhHHHH--hcCCCCeEEEEcCCCC
Confidence            7899999999999998866543 233333333  26899999999998532   12222222  3344 46799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCLS  187 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~  187 (208)
                      |++++|+.+++.+.+
T Consensus       186 gi~eL~~~i~~~l~~  200 (472)
T PRK03003        186 GVGDLLDAVLAALPE  200 (472)
T ss_pred             CcHHHHHHHHhhccc
Confidence            999999999988754

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.76  E-value=8.6e-18  Score=136.90  Aligned_cols=158  Identities=16%  Similarity=0.157  Sum_probs=109.5

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhHhh-
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITKAY-   94 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~~~-   94 (208)
                      ......|.++|..++||  +++++...... ..|+ +|.  .-....+.+++ ...+.+||+||....    ..+...+ 
T Consensus       154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~--~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~fl  230 (329)
T TIGR02729       154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTL--VPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFL  230 (329)
T ss_pred             eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCcc--CCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHH
Confidence            45567899999999999  34444433321 1222 122  11222333433 356899999997432    2344444 


Q ss_pred             --hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          95 --YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        95 --~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                        +..++++++|+|+++.   ++++.+..|..++..+.+   +.|+++|+||+|+.+... ..+..+.++...+.+++++
T Consensus       231 rhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~i  309 (329)
T TIGR02729       231 KHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPI  309 (329)
T ss_pred             HHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEE
Confidence              4479999999999987   678888888888776643   789999999999965432 3445555666667899999


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ||+++.|++++|+.+.+.+
T Consensus       310 SAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       310 SALTGEGLDELLYALAELL  328 (329)
T ss_pred             EccCCcCHHHHHHHHHHHh
Confidence            9999999999999988754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.76  E-value=3.2e-18  Score=144.98  Aligned_cols=148  Identities=16%  Similarity=0.135  Sum_probs=109.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------h
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI--------T   91 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~   91 (208)
                      .+..+||+++|..++||  +++++.....  ...+ +....++....+.+++.+  +.+|||+|.+.+...        .
T Consensus       212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~  288 (449)
T PRK05291        212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERS  288 (449)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHH
Confidence            44568999999999999  4666666543  2223 333346667777777654  799999998654332        2


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ..+++.+|++++|||.+++.+++....|..     ..+.|+++|+||+|+.+.....        ...+.+++++||++|
T Consensus       289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg  355 (449)
T PRK05291        289 REAIEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG  355 (449)
T ss_pred             HHHHHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence            346889999999999999988876655543     3378999999999995533221        334568999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCLS  187 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~~  187 (208)
                      .|++++++.+.+.+..
T Consensus       356 ~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        356 EGIDELREAIKELAFG  371 (449)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999988753

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.76  E-value=2.8e-18  Score=127.62  Aligned_cols=150  Identities=18%  Similarity=0.149  Sum_probs=100.7

Q ss_pred             EecCceEEE--EEEeeecCcc-cccc-ccccccceeeEEEEECCeEEEEEEEeCCChhh----hcchh---HhhhcCCcE
Q psy2518          32 YRGAQACVI--TFSTIDRDSF-EAAH-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAIT---KAYYRGAQA  100 (208)
Q Consensus        32 ~vG~s~~gk--~~~~~~~~~f-~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~---~~~~~~~d~  100 (208)
                      ++|++++||  +++++.+..+ ...+ .+|.+.  ....+.+++ ...+.+|||||...    ...+.   ...++++|+
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~--~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   77 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEP--NLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA   77 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecC--cceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence            589999999  3455545543 2222 233332  223344441 34579999999632    22222   345788999


Q ss_pred             EEEEEeCCCh------hhHHHHHHHHHHHHhhc--------CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518         101 CVITFSTIDR------DSFEAAHSWKMKVENEC--------GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus       101 ii~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      +++|+|.+++      .+++....|...+....        .+.|+++|+||+|+...+..............+.+++++
T Consensus        78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  157 (176)
T cd01881          78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI  157 (176)
T ss_pred             EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence            9999999988      57887777777776443        268999999999996544433332233444445689999


Q ss_pred             ecCCCCCHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~  184 (208)
                      ||+++.|++++++.+.+.
T Consensus       158 Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         158 SAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             ehhhhcCHHHHHHHHHhh
Confidence            999999999999988754

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01889 SelB_euk SelB subfamily

Probab=99.74  E-value=6.9e-18  Score=127.90  Aligned_cols=156  Identities=11%  Similarity=0.065  Sum_probs=99.0

Q ss_pred             eeEEEecCceEEE--EEEeeec----Ccccc-----ccccccccceeeEEEE----------ECCeEEEEEEEeCCChhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDR----DSFEA-----AHSWKMKVSIKRTIKE----------CEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~----~~f~~-----~~~~t~~~~~~~~~~~----------~~~~~~~l~i~Dt~g~~~   86 (208)
                      ++|+++|..++||  +..++..    ..+..     ....|++..+....+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            5799999999999  2344433    11222     1234555554444443          124467899999999876


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHHHHH-HH------
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEADLL-SR------  157 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~~~~-~~------  157 (208)
                      +........+.+|++++|+|.++.........|..  .... +.|+++++||+|+.....  ...++..+. ..      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~~-~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEIL-CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHHc-CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            54433344567899999999988544443322221  1112 579999999999853211  112222221 11      


Q ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         158 ALGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       158 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ..+++++++||++|.|++++++.+.+++.
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            13568999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.74  E-value=1.3e-17  Score=121.59  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=101.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhc
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYR   96 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~   96 (208)
                      ++|+++|++++||  +++++....+.. ...++...++....+..++  ..+.+|||+|...+..        .....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            5899999999999  345554444321 2223333355555555554  4579999999754432        1234678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      .+|++++|+|++++.+..+...|..     ....|+++|+||+|+.+....       .....+.+++++||+++.|+++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~~  147 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLDE  147 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHHH
Confidence            9999999999999888776654432     337999999999998653322       3334456899999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      +++.+.+.+
T Consensus       148 l~~~l~~~~  156 (157)
T cd04164         148 LKEALLELA  156 (157)
T ss_pred             HHHHHHHhh
Confidence            999987653

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01894 EngA1 EngA1 subfamily

Probab=99.73  E-value=1.8e-17  Score=120.88  Aligned_cols=143  Identities=14%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             EEecCceEEE--EEEeeecCc--cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------hhHhhhcCC
Q psy2518          31 YYRGAQACVI--TFSTIDRDS--FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------ITKAYYRGA   98 (208)
Q Consensus        31 ~~vG~s~~gk--~~~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~~   98 (208)
                      +++|.+|+||  +++++....  +.+.++++. .+........++  ..+.+|||||...+..        .....++.+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   77 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVT-RDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA   77 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCce-eCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence            4789999999  345554443  223333322 234444444544  5689999999876433        334567899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|+|..+..+.... .+...+.+.  +.|+++|+||+|+.+....     .......+. +++++||++|.|++++
T Consensus        78 d~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          78 DVILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             CEEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            999999999876554432 112222222  5899999999998553221     223344566 8899999999999999


Q ss_pred             HHHHHHH
Q psy2518         178 FRYLTTK  184 (208)
Q Consensus       178 f~~i~~~  184 (208)
                      |+.+++.
T Consensus       150 ~~~l~~~  156 (157)
T cd01894         150 LDAILEL  156 (157)
T ss_pred             HHHHHhh
Confidence            9999875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.72  E-value=5.3e-17  Score=140.94  Aligned_cols=152  Identities=13%  Similarity=0.159  Sum_probs=108.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+..+|.++|..++||  ++.++....+...+.+++..++....+.+++.. .+.+|||||++.|..++...++.+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            4557899999999999  456666777776665555445545555554332 6899999999999999998999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCC
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG---------CRLMRTSVKEDIN  173 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~  173 (208)
                      +|+|.++...-+....| .....  .+.|+++++||+|+.+   ...+.....+...+         .+++++||++|.|
T Consensus       164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~~---~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG  237 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKPE---ANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG  237 (587)
T ss_pred             EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECccccc---CCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence            99999874322221111 11111  2689999999999854   23344444433332         3699999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         174 VNSIFRYLTT  183 (208)
Q Consensus       174 i~~~f~~i~~  183 (208)
                      ++++|+.+..
T Consensus       238 I~eLl~~I~~  247 (587)
T TIGR00487       238 IDELLDMILL  247 (587)
T ss_pred             hHHHHHhhhh
Confidence            9999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00436 era GTP-binding protein Era

Probab=99.72  E-value=4.9e-17  Score=129.55  Aligned_cols=150  Identities=12%  Similarity=0.069  Sum_probs=100.2

Q ss_pred             eEEEecCceEEE--EEEeeecCcccc--ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc--------chhHhhhc
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEA--AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD--------AITKAYYR   96 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~   96 (208)
                      +|+++|..++||  +++++.+..+..  ..+.|.. +.. ..+...+ ..++.+|||||.....        .....+++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr-~~i-~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~   78 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTR-NRI-SGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG   78 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCccc-CcE-EEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence            689999999999  467666666542  2222332 222 2222222 2468999999974321        12345678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~  175 (208)
                      ++|++++|+|.++..+.+  ..++..+...  +.|+++|+||+|+.+... ..+....++...+. +++++||++|.|++
T Consensus        79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        79 GVDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             hCCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            999999999999887764  3344444332  689999999999853221 22334445554555 89999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCL  186 (208)
Q Consensus       176 ~~f~~i~~~~~  186 (208)
                      ++++.+.+.+.
T Consensus       154 ~L~~~l~~~l~  164 (270)
T TIGR00436       154 FLAAFIEVHLP  164 (270)
T ss_pred             HHHHHHHHhCC
Confidence            99999887763

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0076|consensus

Probab=99.72  E-value=1.2e-17  Score=120.31  Aligned_cols=155  Identities=21%  Similarity=0.255  Sum_probs=117.6

Q ss_pred             eeeEEEecCceEEE-EEEeeecCccc--------cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          27 ITKAYYRGAQACVI-TFSTIDRDSFE--------AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        27 ~~ki~~vG~s~~gk-~~~~~~~~~f~--------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      -+-++++|...+|| +|+-.....|.        ..-.||+|......  .+.  ...+.+||-+|++..+++|..||..
T Consensus        17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i--~v~--~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTI--EVC--NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecce--eec--cceeEEEEcCChHHHHHHHHHHHHH
Confidence            46788999999999 44433333343        45567777544333  333  4458999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHH---HHh---CCeEEEEecC
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLS---RAL---GCRLMRTSVK  169 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~---~~~---~~~~~e~Sa~  169 (208)
                      +|++|+++|.++++-|+....-+..+..+..  ++|+++.+||.|+.+.  ...++.....   ...   .+++..|||.
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            9999999999999999988777777665554  8999999999998552  3333333322   222   3589999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy2518         170 EDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~  187 (208)
                      +|.||++...+++..+.+
T Consensus       171 ~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             hcccHHHHHHHHHHHHhh
Confidence            999999999999998764

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.72  E-value=6.9e-17  Score=122.48  Aligned_cols=154  Identities=14%  Similarity=0.098  Sum_probs=104.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT   91 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~   91 (208)
                      .+...+|+++|.+++||  +++++..+.|...+.++.|..........   ...+.+|||+|.          +.+..+.
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~   97 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI   97 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence            45678999999999999  46777777777777777764433222222   367999999993          4555555


Q ss_pred             HhhhcCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeEE
Q psy2518          92 KAYYRGA---QACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALGCRLM  164 (208)
Q Consensus        92 ~~~~~~~---d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~  164 (208)
                      ..+++.+   +++++|+|.+++.+...  +..|+    .. .+.|+++++||+|+.+....  ..+++.......+.+++
T Consensus        98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l----~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~  172 (196)
T PRK00454         98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWL----KE-YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI  172 (196)
T ss_pred             HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHH----HH-cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence            6666644   67888999887654432  22332    11 26899999999998542211  11223333333357899


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ++||+++.|++++|+.+.+.+
T Consensus       173 ~~Sa~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        173 LFSSLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             EEEcCCCCCHHHHHHHHHHHh
Confidence            999999999999999887654

>PRK11058 GTPase HflX; Provisional

Probab=99.72  E-value=9.7e-17  Score=134.73  Aligned_cols=154  Identities=20%  Similarity=0.148  Sum_probs=104.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh--cchh------HhhhcC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--DAIT------KAYYRG   97 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--~~~~------~~~~~~   97 (208)
                      .+|+++|.+++||  +++++....+.....+..+.+.....+.+.+.. .+.+|||+|..+.  ..++      ...++.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            5899999999999  467666655443223333345555566665431 4679999997431  1222      234689


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe-EEEEecCCCCCHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVN  175 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~i~  175 (208)
                      ||++++|+|.+++.+++.+..|...+..... +.|+++|+||+|+.+...   ....  ....+.+ ++++||++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            9999999999999888877555444443332 689999999999854211   1111  1123554 5899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++++.+.+.+..
T Consensus       352 eL~e~I~~~l~~  363 (426)
T PRK11058        352 LLFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHHhhh
Confidence            999999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.71  E-value=9.5e-17  Score=135.82  Aligned_cols=157  Identities=15%  Similarity=0.084  Sum_probs=103.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch----------h
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI----------T   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~----------~   91 (208)
                      ...+|++++|..++||  +++++...... ....+....+.....+..++.  .+.+|||+|..++...          .
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHH
Confidence            4568999999999999  35555554422 111222223444555556665  5789999996443321          1


Q ss_pred             -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH-HHHHHh----CCeEEE
Q psy2518          92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD-LLSRAL----GCRLMR  165 (208)
Q Consensus        92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~-~~~~~~----~~~~~e  165 (208)
                       ..+++.+|++++|+|.+++.+.+... ++..+.+.  +.|+++|+||+|+.+.. ...++.. .+...+    ++++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi~  323 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIVF  323 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceEE
Confidence             24688999999999999988776653 33333332  68999999999986211 1111222 122222    368999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +||++|.|++++|+.+.+.+..
T Consensus       324 ~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       324 ISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998876543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.71  E-value=5e-17  Score=122.10  Aligned_cols=152  Identities=13%  Similarity=0.111  Sum_probs=103.3

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccc----------------cccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWK----------------MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t----------------~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~   90 (208)
                      +|+++|..++||  +++.+....+...+.++                +..+.....+..  ....+.+|||+|...+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence            478999999999  34555555554433221                111222222222  3567999999999988888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHH----------
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRA----------  158 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~----------  158 (208)
                      +..+++.+|++++|+|.+++.+... ..++..+..  .+.|+++++||+|+..+...  ..++..+..+.          
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            8899999999999999988765443 233444433  37999999999998542211  12223333332          


Q ss_pred             ----hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         159 ----LGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       159 ----~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                          ...+++++||++|.|++++|..+.+.+
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                245899999999999999999988875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.71  E-value=7.3e-17  Score=140.47  Aligned_cols=150  Identities=15%  Similarity=0.153  Sum_probs=111.7

Q ss_pred             eEEEecCceEEE--EEEeeec---CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~---~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      .|.++|..++||  +++++..   +.+.+++.+++++++....+.+++  ..+.+|||||+++|.......+.++|++++
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL   79 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL   79 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence            578999999999  3444442   566677777777777767777766  679999999999998888888999999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC--CHHHHHHHHHHh----CCeEEEEecCCCCC
Q psy2518         104 TFSTID---RDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV--APEEADLLSRAL----GCRLMRTSVKEDIN  173 (208)
Q Consensus       104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v--~~~~~~~~~~~~----~~~~~e~Sa~~~~~  173 (208)
                      |+|.++   +++++.+. +   +. .. +.| +++|+||+|+.++..+  ..++..++.+..    +++++++||++|.|
T Consensus        80 VVDa~~G~~~qT~ehl~-i---l~-~l-gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G  153 (581)
T TIGR00475        80 VVDADEGVMTQTGEHLA-V---LD-LL-GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG  153 (581)
T ss_pred             EEECCCCCcHHHHHHHH-H---HH-Hc-CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence            999998   45555442 2   21 12 567 9999999999653322  233445555544    46899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCL  186 (208)
Q Consensus       174 i~~~f~~i~~~~~  186 (208)
                      +++++..+.+.+.
T Consensus       154 I~eL~~~L~~l~~  166 (581)
T TIGR00475       154 IGELKKELKNLLE  166 (581)
T ss_pred             chhHHHHHHHHHH
Confidence            9999998776653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd01895 EngA2 EngA2 subfamily

Probab=99.70  E-value=2.7e-16  Score=116.26  Aligned_cols=153  Identities=15%  Similarity=0.095  Sum_probs=99.3

Q ss_pred             eeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhh----------cch-hH
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----------DAI-TK   92 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~~~-~~   92 (208)
                      .++|+++|..++||  +++++....+.. ...++...+.....+..++..  +.+|||+|....          ... ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence            47899999999999  345555554322 222323234444555566655  679999996432          111 12


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH-HHHHHh----CCeEEEEe
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD-LLSRAL----GCRLMRTS  167 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~-~~~~~~----~~~~~e~S  167 (208)
                      ..+..+|++++|+|.+++.+..... ++......  +.|+++++||+|+.+.+....+... .+....    +.+++++|
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLILEE--GKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHhc--CCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            3567999999999999987765542 33333222  6899999999998654322222222 222333    25899999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTK  184 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~  184 (208)
                      |+++.|++++++.+.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999988754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.70  E-value=8.4e-17  Score=140.24  Aligned_cols=144  Identities=15%  Similarity=0.197  Sum_probs=107.6

Q ss_pred             cCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch------hHhhh--cCCcEEEE
Q psy2518          34 GAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI------TKAYY--RGAQACVI  103 (208)
Q Consensus        34 G~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~------~~~~~--~~~d~ii~  103 (208)
                      |+.++||  +++++.+..+.....|+.+++.....+.+++..  +++|||||++.+...      .+.++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            7889999  467777777655556666667776777776654  799999999877553      33343  37999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |+|.++.+.   ...+..++.+.  +.|+++++||+|+.+++.+. .+.+++++..+++++++||++|.|++++|+.+.+
T Consensus        79 VvDat~ler---~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~  152 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLEL--GIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIRK  152 (591)
T ss_pred             EecCCcchh---hHHHHHHHHhc--CCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            999987432   22333333322  79999999999986655554 3567788889999999999999999999999987


Q ss_pred             HH
Q psy2518         184 KC  185 (208)
Q Consensus       184 ~~  185 (208)
                      ..
T Consensus       153 ~~  154 (591)
T TIGR00437       153 AI  154 (591)
T ss_pred             Hh
Confidence            53

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.70  E-value=6.9e-17  Score=121.07  Aligned_cols=147  Identities=13%  Similarity=0.059  Sum_probs=97.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcch
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAI   90 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~   90 (208)
                      .-++..+|+++|.+++||  +++++....+...+.++.|.......+..++   .+.+|||+|.          +.+..+
T Consensus        14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~   90 (179)
T TIGR03598        14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL   90 (179)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence            346788999999999999  4676666666666666666444334344443   5899999994          334444


Q ss_pred             hHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHhC--CeE
Q psy2518          91 TKAYYRG---AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG--CRL  163 (208)
Q Consensus        91 ~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~~--~~~  163 (208)
                      ...+++.   ++++++|+|.+++.+..... ++..+...  ..|+++++||+|+.+..  ....++.++.....+  .++
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v  167 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSV  167 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCce
Confidence            4556653   58999999999876655542 22222222  68999999999985321  112333444444443  479


Q ss_pred             EEEecCCCCCHH
Q psy2518         164 MRTSVKEDINVN  175 (208)
Q Consensus       164 ~e~Sa~~~~~i~  175 (208)
                      +++||++|+|++
T Consensus       168 ~~~Sa~~g~gi~  179 (179)
T TIGR03598       168 QLFSSLKKTGID  179 (179)
T ss_pred             EEEECCCCCCCC
Confidence            999999999973

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG0072|consensus

Probab=99.70  E-value=1.2e-16  Score=111.66  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=113.1

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ....++++|-.|.|| ++.--.+-.-.....||+|..    ..++..++.++++||-+|+-..+..|+.||.+.|++|+|
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV   92 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV   92 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence            456789999999999 333222333345677888733    334555888999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHH-----HHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEA-----DLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +|.+|++...-....+-.+.+...  ...+++++||.|... + .+..|+     ....+..-+.+|++||.+|.|+++.
T Consensus        93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~-~-~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSG-A-LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchh-h-hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            999998866555443333433322  677899999999854 2 222222     2223333458999999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         178 FRYLTTKCLS  187 (208)
Q Consensus       178 f~~i~~~~~~  187 (208)
                      ++++.+-+..
T Consensus       171 ~DWL~~~l~~  180 (182)
T KOG0072|consen  171 MDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHhc
Confidence            9999887643

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=1.9e-16  Score=134.26  Aligned_cols=145  Identities=16%  Similarity=0.106  Sum_probs=101.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhhhc
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAYYR   96 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~~   96 (208)
                      .+|+++|..++||  +++++...... ....+.++.+.....+.+++  ..+.+|||+|.+.        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            5899999999999  46666655532 11223333455666666766  6789999999876        2333456788


Q ss_pred             CCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518          97 GAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      .+|++++|+|.+++.+..  .+..|+...     +.|+++|+||+|+.+.    .+...++ ..+++ .++++||++|.|
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~g  149 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRG  149 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCC
Confidence            999999999998864432  234444322     6899999999997431    2222222 34566 589999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTK  184 (208)
Q Consensus       174 i~~~f~~i~~~  184 (208)
                      ++++|+.+.+.
T Consensus       150 v~~l~~~I~~~  160 (435)
T PRK00093        150 IGDLLDAILEE  160 (435)
T ss_pred             HHHHHHHHHhh
Confidence            99999999873

>KOG1707|consensus

Probab=99.69  E-value=1.5e-17  Score=139.53  Aligned_cols=162  Identities=16%  Similarity=0.151  Sum_probs=127.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.++|+++|+.|+||  +++.+..+.|.++.++-..  ......++....+-..|.||+..+.-+......++.||++.
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~--~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~   84 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP--RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC   84 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCC--ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence            7889999999999999  5677778999988777653  22333445556666899999866555555677889999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHH-HHHHHHHhC-C-eEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEE-ADLLSRALG-C-RLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~-~~~~~~~~~-~-~~~e~Sa~~~~~i~  175 (208)
                      ++|+.+++++++.+ .+|+..+.+..   .+.|+|+||||+|+......+.+. ...+..++. + ..++|||++..++.
T Consensus        85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~  164 (625)
T KOG1707|consen   85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVS  164 (625)
T ss_pred             EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhH
Confidence            99999999999999 78999999988   489999999999996654443333 344444443 3 57999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLSE  188 (208)
Q Consensus       176 ~~f~~i~~~~~~~  188 (208)
                      ++|....+.++..
T Consensus       165 e~fYyaqKaVihP  177 (625)
T KOG1707|consen  165 ELFYYAQKAVIHP  177 (625)
T ss_pred             hhhhhhhheeecc
Confidence            9999887777654

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.69  E-value=2.8e-16  Score=120.10  Aligned_cols=114  Identities=13%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC-cEEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA-QACVITF  105 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~-d~ii~v~  105 (208)
                      .|+++|++++||  ++.++..+.|..++.++.. ..........+....+.+|||||+++++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~-~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEP-NVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEee-cceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            589999999999  5677778888777665532 22222222224567799999999999998888899998 9999999


Q ss_pred             eCCCh-hhHHHHHHHHHHHHhh----cCCCCEEEEEeCCCCCC
Q psy2518         106 STIDR-DSFEAAHSWKMKVENE----CGEIPTVLVQNKIDLLD  143 (208)
Q Consensus       106 d~~~~-~s~~~~~~~~~~~~~~----~~~~piivvgnK~Dl~~  143 (208)
                      |.++. .++..+..|+..+...    .+..|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99997 6777776666554322    24799999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.69  E-value=2.7e-16  Score=137.16  Aligned_cols=159  Identities=14%  Similarity=0.162  Sum_probs=112.3

Q ss_pred             ceeeeEEEecCceEEEE--EEeeec--Ccc---------ccc--cccccccceeeEEEEE-----CCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDR--DSF---------EAA--HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~f---------~~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~   84 (208)
                      ....+++++|..++||+  ..+++.  +.+         .+.  ...+.|+.+....+.+     +++.+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            45678999999999992  233322  111         110  1223344444433333     567899999999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCe--
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR--  162 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~--  162 (208)
                      ..|...+..+++.+|++++|+|.++....+....|.....   .+.|+++|+||+|+.+..  ..+...++...+++.  
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcc
Confidence            9999889999999999999999998766665555544332   268999999999985422  233334455555653  


Q ss_pred             -EEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         163 -LMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       163 -~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                       ++++||++|.|++++++.+.+.+...
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P  186 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERIPPP  186 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhCccc
Confidence             89999999999999999999887543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.68  E-value=5.3e-16  Score=136.87  Aligned_cols=152  Identities=14%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCcccccccccc--ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKM--KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~--~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .+...|.++|..++||  ++.++....+...+.+++  .+..+...+..++....+.+|||||++.|..++...++.+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4667999999999999  345555666655443333  223344444445667889999999999999999999999999


Q ss_pred             EEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-------HHHhC--CeEEEEec
Q psy2518         101 CVITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-------SRALG--CRLMRTSV  168 (208)
Q Consensus       101 ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-------~~~~~--~~~~e~Sa  168 (208)
                      +++|+|+++.   ++++.+..    +..  .+.|+++++||+|+...   ..+...+.       ...++  ++++++||
T Consensus       322 aILVVDA~dGv~~QT~E~I~~----~k~--~~iPiIVViNKiDl~~~---~~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAINY----IQA--ANVPIIVAINKIDKANA---NTERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEEECcCCCChhhHHHHHH----HHh--cCceEEEEEECCCcccc---CHHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            9999999874   44443322    211  26899999999998542   12222222       22233  58999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKC  185 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~  185 (208)
                      ++|.|++++|+.+....
T Consensus       393 ktG~GIdeLle~I~~l~  409 (742)
T CHL00189        393 SQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCCCHHHHHHhhhhhh
Confidence            99999999999887653

>KOG0074|consensus

Probab=99.68  E-value=1.5e-16  Score=110.91  Aligned_cols=158  Identities=18%  Similarity=0.179  Sum_probs=119.8

Q ss_pred             ccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          23 EFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.++.+++.+.|-.+.|| +|+..+...-.....||-|  |..+.+..+| .+++++||.+|+...+..|+.||.+.|++
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~G--Fn~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNG--FNTKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCC--cceEEEeecC-cEEEEEEecCCccccchhhhhhhhccceE
Confidence            447789999999999999 5665555655566778877  4455555554 57899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHH----HHHHhCCeEEEEecCCCCCHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADL----LSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      |+|.|.+|+.-|+++..-+.++.....  ..|+.+.+||.|+.....+ ++.+..    ..+..-..+.+|||.+++|+.
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~-eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV-EEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch-HHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            999999999999998766666655444  7999999999998543222 121211    111223468899999999999


Q ss_pred             HHHHHHHHH
Q psy2518         176 SIFRYLTTK  184 (208)
Q Consensus       176 ~~f~~i~~~  184 (208)
                      +..+++...
T Consensus       169 dg~~wv~sn  177 (185)
T KOG0074|consen  169 DGSDWVQSN  177 (185)
T ss_pred             CcchhhhcC
Confidence            988887654

>cd04163 Era Era subfamily

Probab=99.67  E-value=5.4e-16  Score=113.65  Aligned_cols=154  Identities=11%  Similarity=0.075  Sum_probs=97.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc--------chhHhhhc
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD--------AITKAYYR   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~   96 (208)
                      ..+|+++|..|+||  +++++....+......... ...............+.+|||+|.....        ......+.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            57899999999999  3444444433222111111 1111112233345678999999964322        23345678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~  175 (208)
                      .+|++++|+|.+++.+.. ...+...+...  +.|+++|+||+|+........+....+....+ .+++++|++++.|++
T Consensus        82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~  158 (168)
T cd04163          82 DVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD  158 (168)
T ss_pred             hCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence            999999999999872211 12223333332  58999999999986433333344444444443 589999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         176 SIFRYLTTK  184 (208)
Q Consensus       176 ~~f~~i~~~  184 (208)
                      ++|+.+.+.
T Consensus       159 ~l~~~l~~~  167 (168)
T cd04163         159 ELLEEIVKY  167 (168)
T ss_pred             HHHHHHHhh
Confidence            999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.67  E-value=1.4e-15  Score=127.28  Aligned_cols=159  Identities=14%  Similarity=0.151  Sum_probs=108.8

Q ss_pred             cceeeeEEEecCceEEE-E-EEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhh-
Q psy2518          24 FDAITKAYYRGAQACVI-T-FSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAY-   94 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~-   94 (208)
                      ...+..|.++|.+++|| + ++++...... ..|+ +|....  .-.+.++ ....+.+||+||...    ...+...+ 
T Consensus       155 lk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pn--lG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fL  231 (424)
T PRK12297        155 LKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPN--LGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFL  231 (424)
T ss_pred             ecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceE--EEEEEEe-CCceEEEEECCCCcccccccchHHHHHH
Confidence            34455899999999999 3 3444433211 1121 222211  1122332 134589999999632    22344455 


Q ss_pred             --hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          95 --YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        95 --~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                        +.+++++++|+|+++.   +++++...|..++..+.+   +.|+++|+||+|+.+    ..+..+.+++.++.+++++
T Consensus       232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~i  307 (424)
T PRK12297        232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPI  307 (424)
T ss_pred             HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEE
Confidence              4569999999999864   677777888888877644   789999999999843    2345566777777889999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      ||+++.|++++++.+.+.+.+.+
T Consensus       308 SA~tgeGI~eL~~~L~~~l~~~~  330 (424)
T PRK12297        308 SALTGQGLDELLYAVAELLEETP  330 (424)
T ss_pred             eCCCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999988876543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.65  E-value=1.4e-15  Score=135.37  Aligned_cols=150  Identities=17%  Similarity=0.233  Sum_probs=105.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      -.+.-.|.++|..++||  ++.++....+...+.+.+..+.....+.+++  ..+.||||||++.|..++...++.+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            45667899999999999  3555555666554444333333334455554  5689999999999999999899999999


Q ss_pred             EEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-------HHHHhC--CeEEEEecC
Q psy2518         102 VITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-------LSRALG--CRLMRTSVK  169 (208)
Q Consensus       102 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-------~~~~~~--~~~~e~Sa~  169 (208)
                      ++|+|.++.   ++.+.+.    ....  .+.|+++++||+|+.+.   ..+....       ++..++  ++++++||+
T Consensus       365 ILVVdAddGv~~qT~e~i~----~a~~--~~vPiIVviNKiDl~~a---~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAIN----HAKA--AGVPIIVAINKIDKPGA---NPDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEEECCCCCCHhHHHHHH----HHHh--cCCcEEEEEECcccccc---CHHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            999999883   3433321    1111  26899999999998542   1122211       223333  589999999


Q ss_pred             CCCCHHHHHHHHHHH
Q psy2518         170 EDINVNSIFRYLTTK  184 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~  184 (208)
                      +|.|++++|+.+...
T Consensus       436 tG~GI~eLle~I~~~  450 (787)
T PRK05306        436 TGEGIDELLEAILLQ  450 (787)
T ss_pred             CCCCchHHHHhhhhh
Confidence            999999999998753

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.65  E-value=5.4e-16  Score=118.58  Aligned_cols=107  Identities=18%  Similarity=0.236  Sum_probs=76.2

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--  147 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--  147 (208)
                      .++.+|||||++.|.......++.+|++++|+|++++    +++..+..|    . .....|+++++||+|+..+...  
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~-~~~~~~iiivvNK~Dl~~~~~~~~  157 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----E-IMGLKHIIIVQNKIDLVKEEQALE  157 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----H-HcCCCcEEEEEEchhccCHHHHHH
Confidence            6789999999999888777778899999999999873    334333322    1 1223579999999998542111  


Q ss_pred             CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         148 APEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       148 ~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ..++.+++....   +++++++||++|.|++++|+.+.+.+
T Consensus       158 ~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         158 NYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            112233333322   56899999999999999999988765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.65  E-value=2.4e-15  Score=134.15  Aligned_cols=154  Identities=17%  Similarity=0.156  Sum_probs=106.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT   91 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~   91 (208)
                      ...||+++|..++||  +++++....+  ...+.+| +.+.....+.+++..  +.+|||+|.          +.|..+.
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gt-T~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r  525 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGT-TRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLR  525 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCC-CcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHH
Confidence            458999999999999  4566666654  3333333 346666677777776  569999995          2333322


Q ss_pred             -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-HHHHh----CCeEEE
Q psy2518          92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRAL----GCRLMR  165 (208)
Q Consensus        92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-~~~~~----~~~~~e  165 (208)
                       ..+++.+|++++|+|.++..+++.... +..+...  +.|+++|+||+|+.+...  .+..+. +...+    ..+++.
T Consensus       526 ~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~~--~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        526 TQAAIERSELALFLFDASQPISEQDLKV-MSMAVDA--GRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHHc--CCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence             234789999999999999988887653 3333322  689999999999954211  112221 22221    236799


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +||++|.|++++|+.+.+.+..
T Consensus       601 iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999887764

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.64  E-value=1.6e-15  Score=128.36  Aligned_cols=147  Identities=17%  Similarity=0.155  Sum_probs=102.8

Q ss_pred             eEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCCh--------hhhcchhHhhhcC
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ--------EEFDAITKAYYRG   97 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~--------~~~~~~~~~~~~~   97 (208)
                      ||+++|..++||  +++++....... ...|.+..+.....+.+++.  .+.+|||||.        +.+......+++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            589999999999  467766655321 11233333455555566665  4899999995        4455566678899


Q ss_pred             CcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518          98 AQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV  174 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i  174 (208)
                      +|++++|+|..+..+...  +..|+..   .  +.|+++|+||+|+.+....    ..+ ...+++ +++++||++|.|+
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~~---~--~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv  148 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLRK---S--GKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGI  148 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHHH---h--CCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence            999999999987544432  2334332   2  6899999999998553321    122 345677 8999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLS  187 (208)
Q Consensus       175 ~~~f~~i~~~~~~  187 (208)
                      .++++.+.+.+..
T Consensus       149 ~~ll~~i~~~l~~  161 (429)
T TIGR03594       149 GDLLDAILELLPE  161 (429)
T ss_pred             HHHHHHHHHhcCc
Confidence            9999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.63  E-value=3.2e-15  Score=126.72  Aligned_cols=161  Identities=14%  Similarity=0.086  Sum_probs=104.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchh---H
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAIT---K   92 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~---~   92 (208)
                      .....+|.++|..++||  +++++...... ..|+ +|+  +...-.+.+++  ..+.+|||||...    ...+.   .
T Consensus       156 Lk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl--~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fL  231 (500)
T PRK12296        156 LKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTL--VPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFL  231 (500)
T ss_pred             ecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccc--cceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHH
Confidence            56677999999999999  34444433221 1222 232  22233344444  5689999999532    11222   2


Q ss_pred             hhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhc------------CCCCEEEEEeCCCCCCCCCCCHHHHHHHH
Q psy2518          93 AYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENEC------------GEIPTVLVQNKIDLLDQSVVAPEEADLLS  156 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~piivvgnK~Dl~~~~~v~~~~~~~~~  156 (208)
                      ..+..+|++++|+|+++.    +.++.+..|..++..+.            ...|+++|+||+|+.+.+.+. +......
T Consensus       232 rhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l  310 (500)
T PRK12296        232 RHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPEL  310 (500)
T ss_pred             HHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHH
Confidence            245789999999999853    35555555555554432            268999999999996533222 2222233


Q ss_pred             HHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         157 RALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       157 ~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      ...+++++++||+++.|+++++..+.+.+....
T Consensus       311 ~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        311 EARGWPVFEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             HHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            445789999999999999999999998876544

>cd00880 Era_like Era (E

Probab=99.62  E-value=1.8e-15  Score=109.78  Aligned_cols=149  Identities=16%  Similarity=0.108  Sum_probs=94.4

Q ss_pred             EecCceEEE-E-EEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hhHhhhcCCcEE
Q psy2518          32 YRGAQACVI-T-FSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------ITKAYYRGAQAC  101 (208)
Q Consensus        32 ~vG~s~~gk-~-~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~~~~d~i  101 (208)
                      ++|..|+|| + ++++....+. ....++...+........+. ...+.+|||+|...+..       ....+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            579999999 3 3333333222 11222211122333333221 45789999999765543       334578899999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH---HHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE---EADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~---~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++|+|.++..+..... |......  .+.|+++|+||+|+.........   .........+.+++++||+++.|+++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~  156 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR  156 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence            9999999987776554 3333332  27899999999998553322211   1112222335689999999999999999


Q ss_pred             HHHHHH
Q psy2518         179 RYLTTK  184 (208)
Q Consensus       179 ~~i~~~  184 (208)
                      +.+.+.
T Consensus       157 ~~l~~~  162 (163)
T cd00880         157 EALIEA  162 (163)
T ss_pred             HHHHhh
Confidence            998764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.62  E-value=3.6e-15  Score=133.10  Aligned_cols=153  Identities=16%  Similarity=0.050  Sum_probs=100.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKA   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~   93 (208)
                      ....+|+++|..++||  +++++.+..+.. ...|++..+........++  ..+.+|||+|.+.        +......
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~  350 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQI  350 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence            3457899999999999  467666554321 1223333333333334444  3588999999753        3334456


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      +++.+|++++|+|.++...... ..|...+..  .+.|+++|+||+|+.+..   ..... + ...+. ..+++||++|.
T Consensus       351 ~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~---~~~~~-~-~~lg~~~~~~iSA~~g~  422 (712)
T PRK09518        351 AVSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASE---YDAAE-F-WKLGLGEPYPISAMHGR  422 (712)
T ss_pred             HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccch---hhHHH-H-HHcCCCCeEEEECCCCC
Confidence            7899999999999986432211 234444433  279999999999985421   11122 2 12344 56799999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCLS  187 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~  187 (208)
                      ||+++|+.+++.+..
T Consensus       423 GI~eLl~~i~~~l~~  437 (712)
T PRK09518        423 GVGDLLDEALDSLKV  437 (712)
T ss_pred             CchHHHHHHHHhccc
Confidence            999999999988754

>PRK00089 era GTPase Era; Reviewed

Probab=99.61  E-value=5.3e-15  Score=119.15  Aligned_cols=154  Identities=12%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             eeeEEEecCceEEE--EEEeeecCcccccc--ccccccceeeEEEEECCeEEEEEEEeCCChhhh--------cchhHhh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAH--SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--------DAITKAY   94 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~~~~~   94 (208)
                      .-.|+++|..++||  +++++.+..+....  ..|.. +.......  ....++.+|||||....        .......
T Consensus         5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~-~~i~~i~~--~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-HRIRGIVT--EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCccc-ccEEEEEE--cCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            44589999999999  35555555443221  11211 11111122  23367999999996332        2233446


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~  173 (208)
                      +..+|++++|+|.++..+  ....++....+. .+.|+++|+||+|+...+....+....+....+ .+++++||+++.|
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~~-~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLKK-VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHhh-cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            789999999999998322  222233222221 258999999999996332333344555555455 4899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCL  186 (208)
Q Consensus       174 i~~~f~~i~~~~~  186 (208)
                      ++++++.+.+.+.
T Consensus       159 v~~L~~~L~~~l~  171 (292)
T PRK00089        159 VDELLDVIAKYLP  171 (292)
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999988764

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.61  E-value=5.9e-15  Score=125.12  Aligned_cols=156  Identities=16%  Similarity=0.094  Sum_probs=99.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~   91 (208)
                      ...++|+++|..++||  ++++++... ......+....+.....+..++..  +.+|||+|..          .|....
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~  248 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIR  248 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHH
Confidence            3579999999999999  344444332 222222322234344444555544  6799999953          222211


Q ss_pred             -HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH----hCCeEEEE
Q psy2518          92 -KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA----LGCRLMRT  166 (208)
Q Consensus        92 -~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~----~~~~~~e~  166 (208)
                       ..+++.+|++++|+|.+++.+.+... +...+.+.  ..|+++++||+|+.++.. ..+....+...    ..++++++
T Consensus       249 ~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~~~  324 (435)
T PRK00093        249 TLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEEEE
Confidence             24678999999999999987776553 33333322  689999999999853211 11111122222    24689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ||++|.|++++|+.+.+...
T Consensus       325 SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        325 SALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999877554

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.61  E-value=5e-15  Score=108.81  Aligned_cols=148  Identities=14%  Similarity=0.150  Sum_probs=98.7

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchhHhhhc
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAITKAYYR   96 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~~~~~~   96 (208)
                      +|.++|++|+||  +++.+.++.+.....++.+.......+..++   .+.+|||+|.          +.+......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            478999999999  3555555677777788877655555554544   7899999983          334445555554


Q ss_pred             ---CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHH--HhCCeEEEEe
Q psy2518          97 ---GAQACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSR--ALGCRLMRTS  167 (208)
Q Consensus        97 ---~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~--~~~~~~~e~S  167 (208)
                         ..+++++++|.++..+.  ..+.+|+...     ..|+++++||+|+......  .........+  ....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               45788999999876322  2334454432     4799999999998432111  1112222222  2234889999


Q ss_pred             cCCCCCHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTK  184 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~  184 (208)
                      |+++.++.++++.+.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.60  E-value=8e-15  Score=127.30  Aligned_cols=151  Identities=14%  Similarity=0.062  Sum_probs=99.1

Q ss_pred             eEEEecCceEEE--EEEeeecCccccc----cccccccceeeEEEE------------ECCeEEEEEEEeCCChhhhcch
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAA----HSWKMKVSIKRTIKE------------CEGEEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~----~~~t~~~~~~~~~~~------------~~~~~~~l~i~Dt~g~~~~~~~   90 (208)
                      -|.++|..++||  +++++....+...    +.+++|..+......            ++.....+.+|||||++.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            388999999999  4566666666543    334455433222110            0011123889999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC------------CHHHH---
Q psy2518          91 TKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV------------APEEA---  152 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v------------~~~~~---  152 (208)
                      +..+++.+|++++|+|+++   +++++.+..+    ..  .+.|+++++||+|+......            ..+..   
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~  159 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN  159 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence            9999999999999999997   5566554322    11  26899999999998531100            00000   


Q ss_pred             ---------HHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         153 ---------DLLSR------------AL--GCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       153 ---------~~~~~------------~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                               .+++.            .+  ..+++.+||++|+|++++...+....
T Consensus       160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~  215 (590)
T TIGR00491       160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA  215 (590)
T ss_pred             HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence                     01111            11  24899999999999999999876543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.60  E-value=1.7e-15  Score=110.10  Aligned_cols=146  Identities=15%  Similarity=0.206  Sum_probs=102.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh------cchhHhhh--cC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF------DAITKAYY--RG   97 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~------~~~~~~~~--~~   97 (208)
                      ++|.++|..++||  +|+++.+....-...|...++.....+.+++  ..+.+.|+||.-..      ......++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999  5788777776554556666677777777777  45899999994222      12333444  58


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      .|+++.|.|.++.+.-   .....++.+.  ..|++++.||+|...++.+.. ....+++.+|++++.+||+++.|++++
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~L  152 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDEL  152 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence            9999999999875432   2233344433  699999999999865444433 356788889999999999999999999


Q ss_pred             HHHH
Q psy2518         178 FRYL  181 (208)
Q Consensus       178 f~~i  181 (208)
                      ++.|
T Consensus       153 ~~~I  156 (156)
T PF02421_consen  153 KDAI  156 (156)
T ss_dssp             HHHH
T ss_pred             HhhC
Confidence            9865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.59  E-value=1.3e-14  Score=129.54  Aligned_cols=152  Identities=13%  Similarity=0.160  Sum_probs=109.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch----------hHh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI----------TKA   93 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~----------~~~   93 (208)
                      +.++|.++|..++||  +++++.+....  .....|+.+..+.-.++.....+++|||||...+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~--vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            357899999999999  46766555442  2222444444454455556667899999998766431          223


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          94 YY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        94 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ++  ..+|++++|+|.++.+..   ..|..++.+.  +.|++++.||+|+.+++.+ ..+.+++.+.+|++++++||++|
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence            33  489999999999986542   2344444443  6899999999998665555 35567788889999999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKC  185 (208)
Q Consensus       172 ~~i~~~f~~i~~~~  185 (208)
                      .|++++.+.+.+..
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999887654

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.58  E-value=5.6e-14  Score=102.59  Aligned_cols=153  Identities=20%  Similarity=0.196  Sum_probs=109.7

Q ss_pred             ceeeeEEEecCceEEE-EEEeeecCccc---------c----ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518          25 DAITKAYYRGAQACVI-TFSTIDRDSFE---------A----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~~~~~~~~~f~---------~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~   90 (208)
                      ....||++.|..++|| ++.+...++..         .    ..+.|+..|+..-.+   +....+.++|||||++|.-+
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF~fm   84 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERFKFM   84 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHHHHH
Confidence            4567999999999999 45444444442         1    122455555443322   22346899999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEec
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSV  168 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa  168 (208)
                      |....+++.+++++.|.+.+..+ .....+..+.. ...+|++|.+||.||...  -+.+...++.+..  +.+.++.+|
T Consensus        85 ~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a--~ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          85 WEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RNPIPVVVAINKQDLFDA--LPPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-ccCCCEEEEeeccccCCC--CCHHHHHHHHHhccCCCceeeeec
Confidence            99999999999999999999888 33333333332 224999999999999663  3444444444433  779999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTK  184 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~  184 (208)
                      .++.+..+.++.+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999988877665

>PRK10218 GTP-binding protein; Provisional

Probab=99.58  E-value=2.4e-14  Score=124.79  Aligned_cols=159  Identities=11%  Similarity=0.108  Sum_probs=111.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA   89 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~   89 (208)
                      ...+|+++|..++||  ++.+++.  +.|...+            ..+.|+.+..+...++.+.+++++|||+|+..|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            478999999999999  3344433  4444322            34567777777777777789999999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCC
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-APEEADLLSR-------ALGC  161 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~  161 (208)
                      .+..+++.+|++++|+|.++....+. ..++......  +.|.+++.||+|+...+.. ..++...+..       ...+
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~~--gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFAY--GLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHHc--CCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            99999999999999999987543332 2233333222  6889999999998543211 1122222221       1246


Q ss_pred             eEEEEecCCCC----------CHHHHHHHHHHHHHH
Q psy2518         162 RLMRTSVKEDI----------NVNSIFRYLTTKCLS  187 (208)
Q Consensus       162 ~~~e~Sa~~~~----------~i~~~f~~i~~~~~~  187 (208)
                      +++.+||++|.          ++..+|+.+++.+..
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~  196 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA  196 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence            79999999998          588888887777643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.57  E-value=9.3e-15  Score=114.68  Aligned_cols=96  Identities=24%  Similarity=0.358  Sum_probs=80.4

Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeE
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL  163 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~  163 (208)
                      +++..+.+.+++++|++++|||++++. ||+.+.+|+..+..  .++|+++|+||+||.+++.+..+.+..+. ..++++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v  100 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQV  100 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeE
Confidence            677888889999999999999999887 89999999986653  37999999999999665555445555554 478899


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      +++||++|.|++++|+.+.+
T Consensus       101 ~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       101 LMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEecCCchhHHHHHhhhcC
Confidence            99999999999999998764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.57  E-value=8.5e-15  Score=123.78  Aligned_cols=153  Identities=13%  Similarity=0.093  Sum_probs=98.6

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeec--Ccc-----------------------------ccccccccccceeeEEEEECC
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDR--DSF-----------------------------EAAHSWKMKVSIKRTIKECEG   71 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~--~~f-----------------------------~~~~~~t~~~~~~~~~~~~~~   71 (208)
                      ...++++++|..++|| + ..+++.  +..                             .++....+..+.....  +..
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~--~~~   82 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWK--FET   82 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEE--Ecc
Confidence            4578999999999999 2 222221  111                             1122233333444443  444


Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC----
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV----  146 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~----  146 (208)
                      ..+.+.||||+|++.|.......++.+|++++|+|.++.+++.... .+...+.+.....|+++++||+|+.+...    
T Consensus        83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~  162 (426)
T TIGR00483        83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFE  162 (426)
T ss_pred             CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHH
Confidence            4568999999999988766666788999999999999885432111 11112223333467999999999853211    


Q ss_pred             CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518         147 VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       147 v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ...++..++++..+     ++++++||++|.|+.+++.
T Consensus       163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~~  200 (426)
T TIGR00483       163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKSE  200 (426)
T ss_pred             HHHHHHHHHHHHcCCCcccceEEEeecccccccccccc
Confidence            12345556666665     4799999999999997554

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.57  E-value=3.3e-14  Score=110.87  Aligned_cols=147  Identities=22%  Similarity=0.213  Sum_probs=94.5

Q ss_pred             eEEEecCceEEE-E-EEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-------chhHhhhcCC
Q psy2518          29 KAYYRGAQACVI-T-FSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-------AITKAYYRGA   98 (208)
Q Consensus        29 ki~~vG~s~~gk-~-~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~~~~~~   98 (208)
                      ++.++|..++|| + ++++..... ...++.|. .+.....+.+++  ..+++|||||.....       .....+++++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT-~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a   78 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTT-LTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA   78 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCcc-ccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence            689999999999 3 444443331 12222221 233344445554  468999999974332       1233578999


Q ss_pred             cEEEEEEeCCChh-hHHHHHHHHHH--------------------------------------------H----------
Q psy2518          99 QACVITFSTIDRD-SFEAAHSWKMK--------------------------------------------V----------  123 (208)
Q Consensus        99 d~ii~v~d~~~~~-s~~~~~~~~~~--------------------------------------------~----------  123 (208)
                      |++++|+|.+++. ..+.+...+..                                            .          
T Consensus        79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~  158 (233)
T cd01896          79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR  158 (233)
T ss_pred             CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence            9999999998765 33322222211                                            0          


Q ss_pred             ------------HhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         124 ------------ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       124 ------------~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                                  .......|+++|+||+|+.     +.+++..++..  .+++++||++|.|++++|+.+.+.+
T Consensus       159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             cCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        0000136899999999983     45566656553  4689999999999999999988754

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.56  E-value=4.4e-14  Score=117.49  Aligned_cols=160  Identities=19%  Similarity=0.147  Sum_probs=106.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhhhcc----hhH---
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----ITK---   92 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~---   92 (208)
                      .+....|.++|..++||  +++.+...... ..|+ .|..  ...-.+..++ ...+.++||||...-.+    +..   
T Consensus       156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~--p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l  232 (390)
T PRK12298        156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLV--PNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFL  232 (390)
T ss_pred             eeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccC--cEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHH
Confidence            34455799999999999  34444333221 1222 2222  1222233322 23489999999743211    222   


Q ss_pred             hhhcCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEE
Q psy2518          93 AYYRGAQACVITFSTI---DRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLM  164 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~---~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~  164 (208)
                      ..+..++++++|+|++   +.+.++....|+.++..+..   +.|+++|+||+|+.....+ .+...++.+..+  .+++
T Consensus       233 ~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi  311 (390)
T PRK12298        233 KHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVY  311 (390)
T ss_pred             HHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEE
Confidence            3478899999999998   55677777888888877643   6899999999998553322 233444555544  3789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      .+||+++.|++++++.+.+.+.+
T Consensus       312 ~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        312 LISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             EEECCCCcCHHHHHHHHHHHhhh
Confidence            99999999999999999988754

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.56  E-value=1.4e-14  Score=126.29  Aligned_cols=157  Identities=12%  Similarity=0.096  Sum_probs=109.7

Q ss_pred             eeEEEecCceEEE--EEEeeec--Ccccccc------------ccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDR--DSFEAAH------------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT   91 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~--~~f~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~   91 (208)
                      .+|+++|..++||  +..+++.  +.|....            ....|+.+..+...+....+++++|||||+..|....
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            4789999999999  2333322  3333221            2234555666666666667889999999999999888


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HhCCeE
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV-APEEADLLSR-------ALGCRL  163 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v-~~~~~~~~~~-------~~~~~~  163 (208)
                      ..+++.+|++++|+|.++.. ......|+..+...  +.|+++++||+|+.+.+.. ..++...+..       +..+++
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv  158 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI  158 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence            99999999999999998642 34445566655543  6899999999998543311 1222333322       234689


Q ss_pred             EEEecCCCC----------CHHHHHHHHHHHHHH
Q psy2518         164 MRTSVKEDI----------NVNSIFRYLTTKCLS  187 (208)
Q Consensus       164 ~e~Sa~~~~----------~i~~~f~~i~~~~~~  187 (208)
                      +.+||++|.          |+..+|+.+++.+..
T Consensus       159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~  192 (594)
T TIGR01394       159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPA  192 (594)
T ss_pred             EechhhcCcccccCcccccCHHHHHHHHHHhCCC
Confidence            999999995          799999998887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.54  E-value=2.9e-14  Score=119.73  Aligned_cols=159  Identities=14%  Similarity=0.173  Sum_probs=97.6

Q ss_pred             ccceeeeEEEecCceEEE-EEEeeecCccccc------cccccccceeeEEE----------------EEC--C----eE
Q psy2518          23 EFDAITKAYYRGAQACVI-TFSTIDRDSFEAA------HSWKMKVSIKRTIK----------------ECE--G----EE   73 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~------~~~t~~~~~~~~~~----------------~~~--~----~~   73 (208)
                      +....+++.++|..++|| ++...+.+.+.+.      ...|+...+....+                ..+  +    ..
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            445579999999999999 3322223322221      12333222111110                001  1    13


Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--  147 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--  147 (208)
                      ..+.+|||||++.|..........+|++++|+|++++    ++.+.+..    + ......|+++|+||+|+.++...  
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l-~~~~i~~iiVVlNK~Dl~~~~~~~~  159 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----L-DIIGIKNIVIVQNKIDLVSKERALE  159 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----H-HHcCCCcEEEEEEeeccccchhHHH
Confidence            6799999999998876555555678999999999964    33333321    1 12223478999999998553221  


Q ss_pred             CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         148 APEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       148 ~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ..++...+++..   +.+++++||++|.|++++++.+.+.+.
T Consensus       160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            112333344332   468999999999999999999887653

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.53  E-value=2.2e-14  Score=108.39  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             eeeeEEEecCceEEEE--EEeeecCc------------------cccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          26 AITKAYYRGAQACVIT--FSTIDRDS------------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk~--~~~~~~~~------------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      ..+.|.++|..++||+  +.++....                  ...+....+..+.....+..+.....+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            4678999999999992  22221111                  001111112222222222212566779999999999


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHhC---
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG---  160 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~~---  160 (208)
                      .|.......++.+|++|+|+|..+...... ...+..+...  +.|++++.||+|+.+.+  .+..+....+.+..+   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            998888888999999999999987644332 2223333332  68899999999985211  011111112333332   


Q ss_pred             ---CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         161 ---CRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       161 ---~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                         ++++.+||++|.|++++++.+.+.++
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence               37999999999999999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.51  E-value=1e-13  Score=121.43  Aligned_cols=149  Identities=17%  Similarity=0.175  Sum_probs=97.9

Q ss_pred             eEEEecCceEEE--EEEeee---cCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          29 KAYYRGAQACVI--TFSTID---RDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      -|.++|..++||  ++.++.   .+.+.++....+.++.....+.. ++.  .+.+|||||+++|.......+.++|+++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            467889999999  233333   25555554333333443333333 333  3799999999999776677789999999


Q ss_pred             EEEeCCC---hhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC--HHHHHHHHHHhC---CeEEEEecCCCCC
Q psy2518         103 ITFSTID---RDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA--PEEADLLSRALG---CRLMRTSVKEDIN  173 (208)
Q Consensus       103 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~e~Sa~~~~~  173 (208)
                      +|+|.++   +++.+.+.     +.... +.| +++|.||+|+.++....  .++..++....+   .+++++||++|.|
T Consensus        80 LVVda~eg~~~qT~ehl~-----il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         80 LVVACDDGVMAQTREHLA-----ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EEEECCCCCcHHHHHHHH-----HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            9999987   44444332     12222 345 67999999985422111  233444444444   5899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKC  185 (208)
Q Consensus       174 i~~~f~~i~~~~  185 (208)
                      ++++++.+.+..
T Consensus       154 I~~L~~~L~~~~  165 (614)
T PRK10512        154 IDALREHLLQLP  165 (614)
T ss_pred             CHHHHHHHHHhh
Confidence            999999887643

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.51  E-value=4.2e-14  Score=118.73  Aligned_cols=113  Identities=17%  Similarity=0.183  Sum_probs=77.6

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APE  150 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~  150 (208)
                      ...+.+|||||++.|.......+..+|++++|+|.++........+.+..+ ......|++++.||+|+.+....  ..+
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~  157 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYE  157 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHH
Confidence            467899999999999887777788999999999999643111112222222 22223578999999998542211  123


Q ss_pred             HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         151 EADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       151 ~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +...+....   +++++++||++|.|++++++.+...+.
T Consensus       158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            333333332   568999999999999999999887653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04167 Snu114p Snu114p subfamily

Probab=99.49  E-value=7.1e-14  Score=107.62  Aligned_cols=111  Identities=20%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             eEEEecCceEEE--EEEeeecCccccc-----------------cccccccceeeEEEEE-----CCeEEEEEEEeCCCh
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAA-----------------HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQ   84 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~-----------------~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~   84 (208)
                      +|+++|..++||  +..++....+...                 .....|+.+....+.+     ++..+.+.+|||+|+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999  2333333222111                 0112233332222222     466789999999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ..|......+++.+|++++|+|.++..++.. ..|+......  +.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccC
Confidence            9998888889999999999999988776643 3444443322  58999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.49  E-value=8.8e-14  Score=117.62  Aligned_cols=112  Identities=18%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-
Q psy2518          68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV-  146 (208)
Q Consensus        68 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~-  146 (208)
                      .++...+.+.+|||||++.|.......++.+|++++|+|.+++.++.....+...+.......|+++++||+|+.+... 
T Consensus        78 ~~~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  157 (425)
T PRK12317         78 KFETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEK  157 (425)
T ss_pred             EEecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHH
Confidence            3444567899999999988766555557899999999999873222222122222222222356899999999854111 


Q ss_pred             ---CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518         147 ---VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       147 ---v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~  179 (208)
                         ...++..++.+..+     ++++++||++|.|+++++.
T Consensus       158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~  198 (425)
T PRK12317        158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE  198 (425)
T ss_pred             HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence               11234455555555     4699999999999998654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.48  E-value=1.1e-13  Score=98.58  Aligned_cols=135  Identities=15%  Similarity=0.093  Sum_probs=92.6

Q ss_pred             eeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----hhhcchhHhhhcCCcEEE
Q psy2518          28 TKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----EEFDAITKAYYRGAQACV  102 (208)
Q Consensus        28 ~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----~~~~~~~~~~~~~~d~ii  102 (208)
                      =||+++|.+++|| ++.+.+.+... .|..|..+.+.            =.+.||||.    ..+.+..-....+||+++
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            3799999999999 44333333222 45555432222            245899984    233333444567999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ++.|.+++.+.-.     ..+.+.. +.|+|-|.||+|+.. .....+.++++.+..|+ +.|++|+.+|+||+++.+.|
T Consensus        69 ll~dat~~~~~~p-----P~fa~~f-~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASMF-NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             EEecCCCCCccCC-----chhhccc-CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence            9999998754211     1111111 689999999999963 23456777888888898 78999999999999999876


Q ss_pred             H
Q psy2518         182 T  182 (208)
Q Consensus       182 ~  182 (208)
                      -
T Consensus       142 ~  142 (143)
T PF10662_consen  142 E  142 (143)
T ss_pred             h
Confidence            3

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.47  E-value=5.1e-13  Score=116.45  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=96.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc----ccccccccceeeEEEEE--CCeEE----------EEEEEeCCChhhhcc
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA----AHSWKMKVSIKRTIKEC--EGEEV----------RLMLWDTAGQEEFDA   89 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~----~~~~t~~~~~~~~~~~~--~~~~~----------~l~i~Dt~g~~~~~~   89 (208)
                      -.|.++|..++||  ++.++....+..    .+.+++|..+.......  .+..+          .+.+|||||++.|..
T Consensus         7 p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~   86 (586)
T PRK04004          7 PIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTN   86 (586)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHH
Confidence            3589999999999  344443333222    22345554433221100  11111          268999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--C-----------H---H
Q psy2518          90 ITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--A-----------P---E  150 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~-----------~---~  150 (208)
                      ++...++.+|++++|+|.++   ++++..+..+    ..  .+.|+++++||+|+...-..  .           .   +
T Consensus        87 ~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~  160 (586)
T PRK04004         87 LRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQ  160 (586)
T ss_pred             HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHH
Confidence            88888999999999999997   6666655432    11  26899999999998421000  0           0   0


Q ss_pred             H-------HHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         151 E-------ADLLSRAL---------------GCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       151 ~-------~~~~~~~~---------------~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      .       ........               .++++++||++|.|+++++..+...
T Consensus       161 ~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~  216 (586)
T PRK04004        161 ELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL  216 (586)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence            0       00011111               2478999999999999999887643

>cd01850 CDC_Septin CDC/Septin

Probab=99.46  E-value=1.2e-13  Score=110.18  Aligned_cols=140  Identities=11%  Similarity=0.085  Sum_probs=91.4

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChhhh-------
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF-------   87 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------   87 (208)
                      .++|+++|.+|+||  ++++++...+...          ..+|++.+.....+..+|..+.+.+|||+|...+       
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            68999999999999  4566666666543          4667766767777777899999999999993211       


Q ss_pred             -------------------cchhHhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--
Q psy2518          88 -------------------DAITKAYYR--GAQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD--  143 (208)
Q Consensus        88 -------------------~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~--  143 (208)
                                         ...+...+.  .+|+++++.+.+.. .+... ...+..+.   ...|+++|+||+|+..  
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~  159 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE  159 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence                               111112333  46777777776641 12111 22233333   2689999999999844  


Q ss_pred             CCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518         144 QSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus       144 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                      +.....+.+.+.+..+++++|......
T Consensus       160 e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         160 ELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            222345556677778899988776644

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.45  E-value=8.1e-13  Score=103.24  Aligned_cols=111  Identities=15%  Similarity=0.136  Sum_probs=75.1

Q ss_pred             eEEEecCceEEEE--EEeeecC--------------ccccc--cccccccceeeEEEEECCeEEEEEEEeCCChhhhcch
Q psy2518          29 KAYYRGAQACVIT--FSTIDRD--------------SFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        29 ki~~vG~s~~gk~--~~~~~~~--------------~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~   90 (208)
                      +|.++|..++||+  ..+++..              .+.+.  .....|..+......+..+.+++++|||||+..|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            4789999999992  2222211              01010  0112233334444555556678999999999999888


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ...+++.+|++++|+|.++..... ...|+..+.+.  +.|+++++||+|+.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~~--~~P~iivvNK~D~~  129 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRKL--NIPTIIFVNKIDRA  129 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHHc--CCCEEEEEECcccc
Confidence            889999999999999999875543 34455544433  68999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.45  E-value=1.7e-13  Score=105.08  Aligned_cols=103  Identities=18%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC----CC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV----VA  148 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~----v~  148 (208)
                      ...+.+|||||++.|.......++.+|++++|+|.+++..-+.. .... +.+.....++++|.||+|+.....    ..
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i  153 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEI  153 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHH
Confidence            44678999999998876666678999999999999875322211 1111 222222345788999999854211    01


Q ss_pred             HHHHHHHHHHhCC---eEEEEecCCCCCHHHH
Q psy2518         149 PEEADLLSRALGC---RLMRTSVKEDINVNSI  177 (208)
Q Consensus       149 ~~~~~~~~~~~~~---~~~e~Sa~~~~~i~~~  177 (208)
                      .++..++.+.++.   +++.+||++|.|+.+.
T Consensus       154 ~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         154 VADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            2234445556664   5899999999998854

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.40  E-value=4.1e-13  Score=94.08  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=83.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccc-cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      +|++++|++|+||  ++.++....|...+. +|++                           +..+...++++++++++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            5899999999999  456777777766555 5554                           334455678899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      |+.+++++++.+  |...+....+ +.|.++++||.|+.+++.+..+++.        +++++||++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999999876  8777665544 7889999999998554444443332        45678999999884

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG1159 Era GTPase [General function prediction only]

Probab=99.37  E-value=4.4e-12  Score=99.68  Aligned_cols=158  Identities=11%  Similarity=0.118  Sum_probs=101.0

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~~   95 (208)
                      +.--|.++|..++||  +++++++....-..+-........+-+ +..++.++.+.||||.-+        ........+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI-~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI-VTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEE-EEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            345688999999999  456666665543222111111122222 223377899999999532        233444568


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV  174 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i  174 (208)
                      +++|+++||.|.++...-  -.+|+-+..+. .+.|++++.||.|..+......+....+...... ..+++||+.|.|+
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~-~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~  160 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK-TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNV  160 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh-cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCH
Confidence            899999999999985332  23333333322 2579999999999865443223333333344444 8899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLS  187 (208)
Q Consensus       175 ~~~f~~i~~~~~~  187 (208)
                      +.+.+.+...+.+
T Consensus       161 ~~L~~~i~~~Lpe  173 (298)
T COG1159         161 DTLLEIIKEYLPE  173 (298)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999998887653

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.34  E-value=1.4e-12  Score=100.89  Aligned_cols=154  Identities=14%  Similarity=0.173  Sum_probs=94.1

Q ss_pred             eEEEecCceEEE-EEEeeecCcccccc----ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-----hhHhhhcCC
Q psy2518          29 KAYYRGAQACVI-TFSTIDRDSFEAAH----SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-----ITKAYYRGA   98 (208)
Q Consensus        29 ki~~vG~s~~gk-~~~~~~~~~f~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----~~~~~~~~~   98 (208)
                      ||+++|.+++|| +.++..-..+.+..    .+|+.++  ...+. ....+.+++||+||+..+..     .....++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve--~~~v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v   77 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVE--KSHVR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV   77 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEE--EEEEE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCce--EEEEe-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence            799999999999 33332233333322    2444322  22222 23455799999999965533     356678999


Q ss_pred             cEEEEEEeCCChhhH---HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCC----HHHHHHHHHHhC---CeEEEE
Q psy2518          99 QACVITFSTIDRDSF---EAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVA----PEEADLLSRALG---CRLMRT  166 (208)
Q Consensus        99 d~ii~v~d~~~~~s~---~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~----~~~~~~~~~~~~---~~~~e~  166 (208)
                      .++|+|+|+.+.+-.   ..+...+..+.+..+++.+-+..+|.|+..+  +...    .+...+.+...+   +.++.+
T Consensus        78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T  157 (232)
T PF04670_consen   78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT  157 (232)
T ss_dssp             SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred             CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence            999999999855433   3345566667778889999999999998431  1111    122223334445   678889


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      |.-+ ..+.+.|..+++.+.
T Consensus       158 SI~D-~Sly~A~S~Ivq~Li  176 (232)
T PF04670_consen  158 SIWD-ESLYEAWSKIVQKLI  176 (232)
T ss_dssp             -TTS-THHHHHHHHHHHTTS
T ss_pred             cCcC-cHHHHHHHHHHHHHc
Confidence            9887 679999999998865

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.32  E-value=3.7e-12  Score=98.47  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=66.7

Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-------SFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      .....+.+|||+|+..|.......++.+|++++|+|.++..       ..+....| .. .......|++++.||+|+..
T Consensus        74 ~~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~iiivvNK~Dl~~  151 (219)
T cd01883          74 TEKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LL-ARTLGVKQLIVAVNKMDDVT  151 (219)
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HH-HHHcCCCeEEEEEEcccccc
Confidence            34567999999999887766666778899999999999842       11112222 11 22222468999999999853


Q ss_pred             CCCCCH-------HHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy2518         144 QSVVAP-------EEADLLSRALG-----CRLMRTSVKEDINVN  175 (208)
Q Consensus       144 ~~~v~~-------~~~~~~~~~~~-----~~~~e~Sa~~~~~i~  175 (208)
                      . ..+.       ++...+.+..+     ++++.+||++|.|++
T Consensus       152 ~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         152 V-NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             c-cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1 0111       12222333433     569999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.31  E-value=1.1e-11  Score=96.10  Aligned_cols=105  Identities=17%  Similarity=0.137  Sum_probs=68.8

Q ss_pred             EEEEEEeCCChhhhcchhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      ..+.+.||||+++|.......+.  .+|++++|+|.+....-. ...++..+...  +.|+++|.||+|+.++... .+.
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~-~~~  159 (224)
T cd04165          84 KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANIL-QET  159 (224)
T ss_pred             cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHH-HHH
Confidence            46889999999988664444443  689999999988654322 22333333332  5899999999998442211 111


Q ss_pred             HHHHHHHh-----------------------------CCeEEEEecCCCCCHHHHHHHHH
Q psy2518         152 ADLLSRAL-----------------------------GCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       152 ~~~~~~~~-----------------------------~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ..++.+.+                             ..++|.+||.+|.|++++...+.
T Consensus       160 ~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         160 LKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            11121111                             13899999999999999987654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.30  E-value=2.5e-11  Score=100.40  Aligned_cols=147  Identities=16%  Similarity=0.104  Sum_probs=103.8

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~~~   95 (208)
                      -.|+++|..+|||  +|+|+......-. -.|.+.-|.......+.+.+  +.+.||+|.+...         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            4699999999999  5788877765532 22333346666667777766  8999999976322         2233567


Q ss_pred             cCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518          96 RGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      ..||++|||+|....-+-.  .+.+|+.     ..+.|+++|.||+|-.     ..++.......+|+ +.+.+||..|.
T Consensus        82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~  151 (444)
T COG1160          82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGR  151 (444)
T ss_pred             HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhcc
Confidence            8999999999987743322  2233332     2268999999999963     22333333445677 89999999999


Q ss_pred             CHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCL  186 (208)
Q Consensus       173 ~i~~~f~~i~~~~~  186 (208)
                      |+.++.+.++..+.
T Consensus       152 Gi~dLld~v~~~l~  165 (444)
T COG1160         152 GIGDLLDAVLELLP  165 (444)
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999999874

>PRK13351 elongation factor G; Reviewed

Probab=99.28  E-value=3.5e-11  Score=107.43  Aligned_cols=112  Identities=17%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             ceeeeEEEecCceEEEE--EEeeecCc-------------ccc-------ccccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDRDS-------------FEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTA   82 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~~~-------------f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~   82 (208)
                      ....+|.++|..++||+  +.+++...             +..       ++..|+...    ...+....+.+++||||
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~----~~~~~~~~~~i~liDtP   81 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESA----ATSCDWDNHRINLIDTP   81 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccc----eEEEEECCEEEEEEECC
Confidence            45789999999999992  23332210             110       233344322    22333346789999999


Q ss_pred             ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      |+..|......+++.+|++++|+|.++..+......|. .+...  +.|+++++||+|+..
T Consensus        82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~--~~p~iiviNK~D~~~  139 (687)
T PRK13351         82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY--GIPRLIFINKMDRVG  139 (687)
T ss_pred             CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc--CCCEEEEEECCCCCC
Confidence            99999888899999999999999999887776655553 33222  689999999999853

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.28  E-value=2e-11  Score=92.92  Aligned_cols=157  Identities=13%  Similarity=0.046  Sum_probs=92.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccccccccccc-cee--eEEEEECCeEEEEEEEeCCChhhhcch-----hHhhhcC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKV-SIK--RTIKECEGEEVRLMLWDTAGQEEFDAI-----TKAYYRG   97 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~-~~~--~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----~~~~~~~   97 (208)
                      +||+++|++|+||  +++.+.+..+.....++.+. +..  ...+.. +....+.+|||+|.......     ....+..
T Consensus         2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            6899999999999  35555555444433333331 111  111111 11236899999997432221     2223678


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCCC----C---CHHH----HHHHHH----HhC-
Q psy2518          98 AQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQSV----V---APEE----ADLLSR----ALG-  160 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~~----v---~~~~----~~~~~~----~~~-  160 (208)
                      +|+++++.+    .+|... ..|+..+.+.  ..|+++|+||+|+.....    .   ..++    .++.+.    ..+ 
T Consensus        81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~  154 (197)
T cd04104          81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV  154 (197)
T ss_pred             cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            899888843    224333 3455555544  579999999999832111    0   1111    111111    112 


Q ss_pred             -C-eEEEEecC--CCCCHHHHHHHHHHHHHHHhhh
Q psy2518         161 -C-RLMRTSVK--EDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       161 -~-~~~e~Sa~--~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                       . ++|-+|+.  .+.++..+.+.++..+.+..+.
T Consensus       155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence             2 78999998  5789999999999998876544

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.27  E-value=4.2e-11  Score=99.37  Aligned_cols=156  Identities=15%  Similarity=0.057  Sum_probs=103.4

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI--------   90 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------   90 (208)
                      +..+.-+|++++|..++||  +++.+.+..-. -+..|...-|+....+.++|.+  +.+.||+|...-...        
T Consensus       212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeR  289 (454)
T COG0486         212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIER  289 (454)
T ss_pred             hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHH
Confidence            3466789999999999999  34433332221 1122222347778888888877  799999996432221        


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                      ....++.||.+++|+|.+.+.+-... ..+.   ....+.|+++|.||.||..+....     ......+.+++.+||++
T Consensus       290 s~~~i~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t  360 (454)
T COG0486         290 AKKAIEEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKT  360 (454)
T ss_pred             HHHHHHhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecC
Confidence            23457899999999999986322221 1111   222278999999999996533211     11111234689999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~~~  188 (208)
                      |.|++.+.+.+.+.+...
T Consensus       361 ~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         361 GEGLDALREAIKQLFGKG  378 (454)
T ss_pred             ccCHHHHHHHHHHHHhhc
Confidence            999999999988877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.27  E-value=9.1e-11  Score=97.15  Aligned_cols=156  Identities=17%  Similarity=0.094  Sum_probs=104.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcch-h
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAI-T   91 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~-~   91 (208)
                      ..+|++++|.-++||  +++++.++.-.- ...+....|-....+..++++  +.+.||+|..          .|... .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence            579999999999999  345544443331 112222235566667777777  6899999953          23222 1


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-Hh----CCeEEEE
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSR-AL----GCRLMRT  166 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~----~~~~~e~  166 (208)
                      ...+..||++++|.|.+.+.+-++.. ....+.+.  ..+++++.||+|+-++.....++.+...+ .+    ..+.+.+
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~~--g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i  331 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQDLR-IAGLIEEA--GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI  331 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHHc--CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence            23577899999999999987655432 22223222  68999999999986654444454443332 22    2489999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ||++|.+++++|+.+.+..-
T Consensus       332 SA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         332 SALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EecCCCChHHHHHHHHHHHH
Confidence            99999999999998776543

>cd04169 RF3 RF3 subfamily

Probab=99.27  E-value=3.9e-11  Score=95.33  Aligned_cols=80  Identities=19%  Similarity=0.217  Sum_probs=59.0

Q ss_pred             ceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          61 SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        61 ~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+......++...+++++|||||+.+|.......++.+|++++|+|.++..... ...++.....  .+.|+++++||+|
T Consensus        58 si~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D  134 (267)
T cd04169          58 SVTSSVMQFEYRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLD  134 (267)
T ss_pred             CeEEEEEEEeeCCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCc
Confidence            344455566667788999999999988877778899999999999998754322 2333333322  2689999999999


Q ss_pred             CCC
Q psy2518         141 LLD  143 (208)
Q Consensus       141 l~~  143 (208)
                      +..
T Consensus       135 ~~~  137 (267)
T cd04169         135 REG  137 (267)
T ss_pred             cCC
Confidence            844

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.26  E-value=1.9e-11  Score=94.44  Aligned_cols=79  Identities=27%  Similarity=0.391  Sum_probs=59.8

Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-CCCCCCH
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-DQSVVAP  149 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-~~~~v~~  149 (208)
                      +..+.+++|||||++.|......+++.+|++++|+|+++..+.+....|. .....  +.|+++++||+|+. .+..++.
T Consensus        70 ~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~~--~~p~ilviNKiD~~~~e~~~~~  146 (222)
T cd01885          70 GNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALKE--RVKPVLVINKIDRLILELKLSP  146 (222)
T ss_pred             CCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCCcchhhhcCCH
Confidence            45889999999999999998999999999999999999876665433322 22221  57999999999974 3344554


Q ss_pred             HHH
Q psy2518         150 EEA  152 (208)
Q Consensus       150 ~~~  152 (208)
                      +++
T Consensus       147 ~~~  149 (222)
T cd01885         147 EEA  149 (222)
T ss_pred             HHH
Confidence            443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.26  E-value=7.1e-11  Score=89.67  Aligned_cols=144  Identities=15%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             eeeEEEecCceEEEE--EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc
Q psy2518          27 ITKAYYRGAQACVIT--FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~--~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~   88 (208)
                      .++|.++|..++||+  ..+++..                ...++...  |.........+.....++.+.||||+..|.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~r--g~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKAR--GITINTAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhc--CccEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence            368999999999992  2222211                00111112  222223334444455678999999998887


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC---CHHHHHHHHHHhC----
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV---APEEADLLSRALG----  160 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v---~~~~~~~~~~~~~----  160 (208)
                      ......+..+|++++|+|.+..-.-+ ....+..+.+.  +.| +|++.||+|+..+...   ..++...+....+    
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~  156 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGD  156 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccccc
Confidence            77777888999999999998643222 12223333322  455 7889999998432211   1223444444443    


Q ss_pred             -CeEEEEecCCCCCHH
Q psy2518         161 -CRLMRTSVKEDINVN  175 (208)
Q Consensus       161 -~~~~e~Sa~~~~~i~  175 (208)
                       ++++.+||++|.|+.
T Consensus       157 ~v~iipiSa~~g~n~~  172 (195)
T cd01884         157 NTPIVRGSALKALEGD  172 (195)
T ss_pred             CCeEEEeeCccccCCC
Confidence             579999999999863

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.26  E-value=6.5e-11  Score=102.15  Aligned_cols=116  Identities=11%  Similarity=0.073  Sum_probs=77.7

Q ss_pred             cceeeeEEEecCceEEEE--EEeee--cCc------cc------------cccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVIT--FSTID--RDS------FE------------AAHSWKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk~--~~~~~--~~~------f~------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      -.+..++.++|..++||+  ..+++  .+.      ..            .......|+.+......++.+.+++++|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            356889999999999993  22221  110      00            001112244444555556556788999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ||++.|......+++.+|++++|+|.++..... ...++......  +.|+++++||+|+.
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~~--~iPiiv~iNK~D~~  144 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRLR--DTPIFTFINKLDRD  144 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHhc--CCCEEEEEECCccc
Confidence            999998887778899999999999998754322 23444333322  78999999999974

>KOG0462|consensus

Probab=99.25  E-value=8e-11  Score=98.91  Aligned_cols=112  Identities=18%  Similarity=0.290  Sum_probs=88.6

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~  149 (208)
                      +|+.+.+++.||||+-.|.......+.-++++|+|+|.++.---+.+..++..+..   +..+|.|.||.|++..+   .
T Consensus       121 ~~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~ad---p  194 (650)
T KOG0462|consen  121 DGQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSAD---P  194 (650)
T ss_pred             cCCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCC---H
Confidence            58889999999999999999889999999999999999987666666555555544   67899999999996633   2


Q ss_pred             HHHHHH-HHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         150 EEADLL-SRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       150 ~~~~~~-~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +..+.. -..+   ..+.+.+|||+|.|++++++.+++.+.-
T Consensus       195 e~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp  236 (650)
T KOG0462|consen  195 ERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP  236 (650)
T ss_pred             HHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence            333322 2223   3389999999999999999999998753

>PRK12736 elongation factor Tu; Reviewed

Probab=99.24  E-value=6.8e-11  Score=99.05  Aligned_cols=156  Identities=14%  Similarity=0.141  Sum_probs=92.9

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeec----------------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDR----------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~----------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ...++|.++|....|| + ..++..                +...++....+  ........+......+.++||||+++
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~--T~~~~~~~~~~~~~~i~~iDtPGh~~   87 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGI--TINTAHVEYETEKRHYAHVDCPGHAD   87 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCc--cEEEEeeEecCCCcEEEEEECCCHHH
Confidence            4578899999999999 2 222211                11111112222  22223334444455688999999998


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA---PEEADLLSRALG--  160 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~---~~~~~~~~~~~~--  160 (208)
                      |.......++.+|++++|+|.++...-+. ..++..+...  +.| +|++.||+|+.++....   .++...+.+..+  
T Consensus        88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~  164 (394)
T PRK12736         88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence            87666666788999999999986422211 2222223222  567 67889999985322211   224444544454  


Q ss_pred             ---CeEEEEecCCCC--------CHHHHHHHHHHHH
Q psy2518         161 ---CRLMRTSVKEDI--------NVNSIFRYLTTKC  185 (208)
Q Consensus       161 ---~~~~e~Sa~~~~--------~i~~~f~~i~~~~  185 (208)
                         ++++.+||++|.        ++.++++.+.+.+
T Consensus       165 ~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        165 GDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             cCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence               479999999983        4555555555443

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.24  E-value=1.7e-10  Score=95.69  Aligned_cols=115  Identities=18%  Similarity=0.238  Sum_probs=93.2

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~  149 (208)
                      +|+.+.+++.||||+-.|.-.....+..+.++++|+|.++.-.-+.+.+.+..+.+   +..++-|.||.||+..  -++
T Consensus        72 ~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~A--dpe  146 (603)
T COG0481          72 DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAA--DPE  146 (603)
T ss_pred             CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCC--CHH
Confidence            67899999999999999988888889999999999999998766666665666655   6789999999999652  234


Q ss_pred             HHHHHHHHHhCC---eEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         150 EEADLLSRALGC---RLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       150 ~~~~~~~~~~~~---~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      .-.++...-.|+   ..+.||||+|.||+++++.+++.+.-..
T Consensus       147 rvk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         147 RVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             HHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence            444555556676   5799999999999999999999886433

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.24  E-value=6e-11  Score=99.41  Aligned_cols=143  Identities=14%  Similarity=0.127  Sum_probs=87.7

Q ss_pred             ceeeeEEEecCceEEE-E-EEeee----------------cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTID----------------RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~----------------~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ...++|.++|....|| + ..++.                .+...++....+..+  ...+.++....++.+|||||+++
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHH
Confidence            4578899999999999 2 22221                111122222222223  33444555566789999999998


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVA---PEEADLLSRALG--  160 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v~---~~~~~~~~~~~~--  160 (208)
                      |..........+|++++|+|+++....+. .+.+..+...  ..|.+ ++.||+|+.++....   .++..++++..+  
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            87655555678899999999987322221 1222223222  46654 689999985432211   234555666654  


Q ss_pred             ---CeEEEEecCCCC
Q psy2518         161 ---CRLMRTSVKEDI  172 (208)
Q Consensus       161 ---~~~~e~Sa~~~~  172 (208)
                         ++++.+||++|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999885

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077|consensus

Probab=99.23  E-value=2.3e-11  Score=87.35  Aligned_cols=154  Identities=14%  Similarity=0.207  Sum_probs=112.4

Q ss_pred             cceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          24 FDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      |.+.-|+++.|-.+.|| +++..+.+.-...+.||.-.  .+..+.+.  .++++.+|-+|+...+..|+.|+..+|+++
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHP--TSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv   92 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP--TSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV   92 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccccccCCCcCC--ChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence            55677999999999999 45444455555566666531  12333444  456899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--------------C---CeE
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--------------G---CRL  163 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--------------~---~~~  163 (208)
                      +.+|..+.+-|.+.+.-++.+.....  +.|+++.|||.|.+.  ..++++......-.              +   +..
T Consensus        93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~--a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev  170 (193)
T KOG0077|consen   93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPY--AASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV  170 (193)
T ss_pred             eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCC--cccHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence            99999999999988777777665553  899999999999854  33444433211110              1   257


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |.||...+.+--+.|.++.+
T Consensus       171 fmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  171 FMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEEEEccCccceeeeehhh
Confidence            88999888887777776544

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.21  E-value=3.8e-11  Score=97.40  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=55.9

Q ss_pred             EEEecCceEEE--EEEeeecCccc------cccccccccceeeEE---------------EEECC-eEEEEEEEeCCCh-
Q psy2518          30 AYYRGAQACVI--TFSTIDRDSFE------AAHSWKMKVSIKRTI---------------KECEG-EEVRLMLWDTAGQ-   84 (208)
Q Consensus        30 i~~vG~s~~gk--~~~~~~~~~f~------~~~~~t~~~~~~~~~---------------~~~~~-~~~~l~i~Dt~g~-   84 (208)
                      |.++|..++||  +|+++....+.      .++.|++|..+....               ...++ ..+.+++|||+|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            46899999999  46777666643      345677775543221               11233 3478999999998 


Q ss_pred             ---hhhcchhHhh---hcCCcEEEEEEeCC
Q psy2518          85 ---EEFDAITKAY---YRGAQACVITFSTI  108 (208)
Q Consensus        85 ---~~~~~~~~~~---~~~~d~ii~v~d~~  108 (208)
                         +++..+...+   ++.||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               5566666665   89999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.21  E-value=1.2e-10  Score=97.61  Aligned_cols=155  Identities=12%  Similarity=0.129  Sum_probs=93.0

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeec-------Cc---------cccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDR-------DS---------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~-------~~---------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ...++|.++|....|| + ..++..       ..         ..++...  |+........+.....++.++||||++.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~r--GiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKAR--GITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhc--CceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            5568899999999999 2 232222       11         1111122  2222223333444455689999999988


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCC---CHHHHHHHHHHhC--
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVV---APEEADLLSRALG--  160 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v---~~~~~~~~~~~~~--  160 (208)
                      |.......+..+|++++|+|..+...-+ ..+++..+...  ..|.+ ++.||+|+.++...   ..++...+...++  
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~--gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            8766666778999999999998743222 22333333222  56755 57999998542211   1224444555543  


Q ss_pred             ---CeEEEEecCCCC----------CHHHHHHHHHHH
Q psy2518         161 ---CRLMRTSVKEDI----------NVNSIFRYLTTK  184 (208)
Q Consensus       161 ---~~~~e~Sa~~~~----------~i~~~f~~i~~~  184 (208)
                         ++++.+||++|.          ++.++++.+...
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence               578999999985          455666655544

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.20  E-value=5.9e-10  Score=101.99  Aligned_cols=103  Identities=20%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             EEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC----
Q psy2518          76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA----  148 (208)
Q Consensus        76 l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~----  148 (208)
                      +.+|||||++.|..+....++.+|++++|+|+++   +++++.+..    +...  +.|+++++||+|+......+    
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~----lk~~--~iPiIVViNKiDL~~~~~~~~~~~  601 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINI----LRQY--KTPFVVAANKIDLIPGWNISEDEP  601 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHH----HHHc--CCCEEEEEECCCCccccccccchh
Confidence            8999999999998888888899999999999987   555554432    2221  68999999999985321110    


Q ss_pred             ---------HHHHHHH----------HHH-------------h--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         149 ---------PEEADLL----------SRA-------------L--GCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       149 ---------~~~~~~~----------~~~-------------~--~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                               .....++          ..+             +  .++++.+||++|.|++++...+...
T Consensus       602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l  671 (1049)
T PRK14845        602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence                     0000111          011             1  2478999999999999999876544

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.17  E-value=2.6e-10  Score=95.89  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC---
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA---  148 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~---  148 (208)
                      ...++.++||||++.|.......+..+|++++|+|.+....-+....|.  +.......+++++.||+|+.+...-.   
T Consensus        78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHH
Confidence            4457899999999998766666788999999999987653222111121  11222234688999999985422111   


Q ss_pred             -HHHHHHHHHHhC---CeEEEEecCCCCCHHHH
Q psy2518         149 -PEEADLLSRALG---CRLMRTSVKEDINVNSI  177 (208)
Q Consensus       149 -~~~~~~~~~~~~---~~~~e~Sa~~~~~i~~~  177 (208)
                       .++...+.+..+   ++++++||++|.|+.+.
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence             122223334444   36999999999999863

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.16  E-value=2.3e-10  Score=91.16  Aligned_cols=97  Identities=22%  Similarity=0.315  Sum_probs=65.1

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      ..+.+.+|||||...|.......++.+|++++|+|.++.........|. .+...  +.|.+++.||+|+...  ...+.
T Consensus        62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~~~--~~~~~  136 (268)
T cd04170          62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRERA--DFDKT  136 (268)
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccCCC--CHHHH
Confidence            3467899999999888877888999999999999999876654433332 22222  6899999999998542  22333


Q ss_pred             HHHHHHHhCCeEE--EEecCCCCC
Q psy2518         152 ADLLSRALGCRLM--RTSVKEDIN  173 (208)
Q Consensus       152 ~~~~~~~~~~~~~--e~Sa~~~~~  173 (208)
                      ...+...++.+++  .+...++.+
T Consensus       137 ~~~l~~~~~~~~~~~~ip~~~~~~  160 (268)
T cd04170         137 LAALQEAFGRPVVPLQLPIGEGDD  160 (268)
T ss_pred             HHHHHHHhCCCeEEEEecccCCCc
Confidence            4444445555443  333444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.14  E-value=1.2e-10  Score=80.06  Aligned_cols=137  Identities=16%  Similarity=0.121  Sum_probs=91.7

Q ss_pred             eEEEecCceEEEEEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh----hhcchhHhhhcCCcEEEEE
Q psy2518          29 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----EFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        29 ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----~~~~~~~~~~~~~d~ii~v  104 (208)
                      |+.++|..|+||+-+.........-|..|..+++..+           -..||+|.-    .+.+.......++|++++|
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v   71 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVIIYV   71 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceeeee
Confidence            7899999999993221111122223555555443222           257899852    2223344456899999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      -..++++|--.     ..+.. ....|+|-|.+|.||.+.  -..+..+.+..+.|. ++|++|+.++.|+++++..+..
T Consensus        72 ~~and~~s~f~-----p~f~~-~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          72 HAANDPESRFP-----PGFLD-IGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             ecccCccccCC-----ccccc-ccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            99999876311     11111 115679999999999653  345667778888888 8999999999999999998765


Q ss_pred             H
Q psy2518         184 K  184 (208)
Q Consensus       184 ~  184 (208)
                      .
T Consensus       144 ~  144 (148)
T COG4917         144 L  144 (148)
T ss_pred             h
Confidence            3

>cd00066 G-alpha G protein alpha subunit

Probab=99.13  E-value=6.2e-10  Score=90.65  Aligned_cols=140  Identities=14%  Similarity=0.111  Sum_probs=96.1

Q ss_pred             CccccccccccccceeeEEE--------EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---------
Q psy2518          48 DSFEAAHSWKMKVSIKRTIK--------ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR---------  110 (208)
Q Consensus        48 ~~f~~~~~~t~~~~~~~~~~--------~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---------  110 (208)
                      .-+.+.|.||.. |......        .+.-..+.+.+||++|+...+..|..++.+++++++|.|+++.         
T Consensus       128 ri~~~~y~Pt~~-Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~  206 (317)
T cd00066         128 RISDPDYIPTEQ-DILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDES  206 (317)
T ss_pred             HHhCCCCCCChh-HheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCc
Confidence            344456666654 3322222        2223467799999999999999999999999999999999874         


Q ss_pred             -hhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCC----------------CCCCHHHHHHHHHH----------hCC
Q psy2518         111 -DSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQ----------------SVVAPEEADLLSRA----------LGC  161 (208)
Q Consensus       111 -~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~----------------~~v~~~~~~~~~~~----------~~~  161 (208)
                       ..+.+....+..+.+...  +.|+++++||.|+-.+                .....+.+..+...          ..+
T Consensus       207 ~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~  286 (317)
T cd00066         207 TNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEI  286 (317)
T ss_pred             chHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeE
Confidence             344444455555554432  7999999999996321                12234455544433          123


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         162 RLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       162 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ..+.++|.+-.++..+|+.+.+.++..
T Consensus       287 ~~~~t~a~Dt~~i~~vf~~v~~~i~~~  313 (317)
T cd00066         287 YPHFTCATDTENIRFVFDAVKDIILQN  313 (317)
T ss_pred             EEEeccccchHHHHHHHHHHHHHHHHH
Confidence            457889999999999999998888764

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1707|consensus

Probab=99.13  E-value=2.9e-10  Score=96.17  Aligned_cols=169  Identities=18%  Similarity=0.198  Sum_probs=123.9

Q ss_pred             eeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHh
Q psy2518          16 WDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA   93 (208)
Q Consensus        16 ~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~   93 (208)
                      .|..-+..-+.++++.++|+.++||  .+..|.++.+...+..+....+....+...|+.-.+.+-|.+.. ...-+...
T Consensus       414 ~d~~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k  492 (625)
T KOG1707|consen  414 LDRKKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK  492 (625)
T ss_pred             hhhccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc
Confidence            3433344568899999999999999  46777788888877788777777777777788877888887754 22222222


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      . ..+|+++++||.+++.||..+...++.-... ...|+++|++|+|+.+..+...-+-.+++.++++ +-+..|.++..
T Consensus       493 e-~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  493 E-AACDVACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             c-ceeeeEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence            2 7899999999999999998876554444333 4799999999999966443222222789999999 56778888544


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCLSE  188 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~~  188 (208)
                      . .++|..|+..+...
T Consensus       571 s-~~lf~kL~~~A~~P  585 (625)
T KOG1707|consen  571 S-NELFIKLATMAQYP  585 (625)
T ss_pred             C-chHHHHHHHhhhCC
Confidence            4 89999998876543

>KOG0090|consensus

Probab=99.12  E-value=4.6e-09  Score=78.83  Aligned_cols=150  Identities=13%  Similarity=0.164  Sum_probs=94.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc---CCcEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR---GAQACVI  103 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~---~~d~ii~  103 (208)
                      -|+++|.+++||  +|.++.++.+...+.+-..   ..-.+.++...  ..+.|.||+.+.+.-...+++   .+-+++|
T Consensus        40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF  114 (238)
T KOG0090|consen   40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF  114 (238)
T ss_pred             cEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence            589999999999  5788888866554433221   11222222222  799999999998876666766   7999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCC------CCHHHHHHHH----------------
Q psy2518         104 TFSTID-RDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSV------VAPEEADLLS----------------  156 (208)
Q Consensus       104 v~d~~~-~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~------v~~~~~~~~~----------------  156 (208)
                      |+|..- ......+.+++=.+.-.+    +.+|+++++||.|+--.+.      .-+.|...+.                
T Consensus       115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~  194 (238)
T KOG0090|consen  115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK  194 (238)
T ss_pred             EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence            999753 333444444443333222    2789999999999842110      0011111110                


Q ss_pred             ----------------HHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         157 ----------------RALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       157 ----------------~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                                      ....+.|.++|++++ +++++-+++.+.
T Consensus       195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                            002246889999998 899998887654

>cd01855 YqeH YqeH

Probab=99.10  E-value=8.6e-10  Score=83.36  Aligned_cols=94  Identities=19%  Similarity=0.152  Sum_probs=67.2

Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCC
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGC  161 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~  161 (208)
                      +...+..+++++|++++|+|++++..     .|...+.....+.|+++|+||+|+..+ ....+....+.     +..+.
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~   97 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGL   97 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCC
Confidence            57778889999999999999987642     122222222236899999999998643 33344444443     22333


Q ss_pred             ---eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         162 ---RLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       162 ---~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                         .++.+||++|.|++++++.+.+.+.
T Consensus        98 ~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          98 KPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             CcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence               6899999999999999999988653

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.09  E-value=4.1e-10  Score=96.32  Aligned_cols=107  Identities=20%  Similarity=0.144  Sum_probs=67.7

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~  149 (208)
                      .....++.+|||||++.|.......++.+|++++|+|.+....-.....|.  +.......|++++.||+|+.+.+.-..
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~lg~~~iIvvvNKiD~~~~~~~~~  180 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLLGIKHLVVAVNKMDLVDYSEEVF  180 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHhCCCceEEEEEeeccccchhHHH
Confidence            344557899999999988665555679999999999997643211111111  111222357899999999854221111


Q ss_pred             H----HHHHHHHHhC----CeEEEEecCCCCCHHHHH
Q psy2518         150 E----EADLLSRALG----CRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       150 ~----~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f  178 (208)
                      +    +...+.+..+    .+++.+||++|.|+.++-
T Consensus       181 ~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~  217 (474)
T PRK05124        181 ERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS  217 (474)
T ss_pred             HHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence            1    1222233333    579999999999998653

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.07  E-value=4.1e-09  Score=88.85  Aligned_cols=148  Identities=16%  Similarity=0.190  Sum_probs=93.9

Q ss_pred             EEEecCceEEE-EEE-eeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          30 AYYRGAQACVI-TFS-TIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        30 i~~vG~s~~gk-~~~-~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      |.++|.---|| +++ .+-.....+...-.+.=++.-..+..+ +..-.+.+.||||++-|..++..=.+-+|++++|.+
T Consensus         8 VtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa   87 (509)
T COG0532           8 VTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVA   87 (509)
T ss_pred             EEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEE
Confidence            66778877788 222 111222222222222112223333443 123468999999999999999998999999999999


Q ss_pred             CCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC---------CeEEEEecCCCCCH
Q psy2518         107 TIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG---------CRLMRTSVKEDINV  174 (208)
Q Consensus       107 ~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~e~Sa~~~~~i  174 (208)
                      .++.   ++.+.+..    .+..  +.|++++.||.|..+.   .......-..++|         ..++.+||++|.|+
T Consensus        88 ~dDGv~pQTiEAI~h----ak~a--~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi  158 (509)
T COG0532          88 ADDGVMPQTIEAINH----AKAA--GVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGI  158 (509)
T ss_pred             ccCCcchhHHHHHHH----HHHC--CCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCH
Confidence            9984   44433321    1111  7999999999998642   2222222222222         36899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCL  186 (208)
Q Consensus       175 ~~~f~~i~~~~~  186 (208)
                      .+|+..++-...
T Consensus       159 ~eLL~~ill~ae  170 (509)
T COG0532         159 DELLELILLLAE  170 (509)
T ss_pred             HHHHHHHHHHHH
Confidence            999998776543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.03  E-value=4.1e-09  Score=86.33  Aligned_cols=155  Identities=19%  Similarity=0.131  Sum_probs=99.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccc--cccccccceeeEEEEECCeEEEEEEEeCCChh---------hhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE---------EFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------~~~~~~   91 (208)
                      .....|.++|=++.||  +|+++........  .-.|.  |-..+.+.+.+ ...+.+-||.|--         -|.+ .
T Consensus       190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATL--dpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-T  265 (411)
T COG2262         190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATL--DPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-T  265 (411)
T ss_pred             cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccc--cCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-H
Confidence            3456789999999999  3554433222211  22333  33455566654 2347889999942         2222 2


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                      -.....||+++.|.|.+++...+.+..-..-+....- .+|+++|.||.|+..+..    .........+ ..+.+||++
T Consensus       266 LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~  340 (411)
T COG2262         266 LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKT  340 (411)
T ss_pred             HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEecc
Confidence            2345789999999999999766666544444444322 789999999999744222    1111112122 589999999


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~~~  188 (208)
                      |.|++.+.+.|.+.+...
T Consensus       341 ~~gl~~L~~~i~~~l~~~  358 (411)
T COG2262         341 GEGLDLLRERIIELLSGL  358 (411)
T ss_pred             CcCHHHHHHHHHHHhhhc
Confidence            999999999999887644

>PRK00098 GTPase RsgA; Reviewed

Probab=99.03  E-value=4e-09  Score=85.24  Aligned_cols=87  Identities=25%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             hhcCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI  172 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~  172 (208)
                      ..+++|++++|+|+++++++.. +.+|+..+..  .+.|+++|+||+||.+... ..++..+..+..+++++++||+++.
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            3589999999999988876555 4788776654  2689999999999953221 1222334455668899999999999


Q ss_pred             CHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTT  183 (208)
Q Consensus       173 ~i~~~f~~i~~  183 (208)
                      |++++++.+..
T Consensus       154 gi~~L~~~l~g  164 (298)
T PRK00098        154 GLDELKPLLAG  164 (298)
T ss_pred             cHHHHHhhccC
Confidence            99999988754

>KOG0705|consensus

Probab=99.03  E-value=3.5e-09  Score=89.22  Aligned_cols=168  Identities=17%  Similarity=0.219  Sum_probs=131.3

Q ss_pred             EEeeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh
Q psy2518          14 MLWDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT   91 (208)
Q Consensus        14 ~~~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~   91 (208)
                      .=|.+..+   -..+|+-+||..+.||  +..|++.+.|.....|--|  .+.+++.++++...+.+.|.+|.     .-
T Consensus        20 qewtlsrs---ipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~-----~~   89 (749)
T KOG0705|consen   20 QEWTLSRS---IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGH-----PD   89 (749)
T ss_pred             cceeeecc---cchhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCC-----ch
Confidence            34555544   4568999999999999  5789999999887777654  45677888999999999999883     23


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCC--CCCCCCHHHHHHHHHH-hCCeEEEE
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLL--DQSVVAPEEADLLSRA-LGCRLMRT  166 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~e~  166 (208)
                      .+|..++|++||||.+.+..+|+.+..+...+..+..  ..|++++|++.-..  ..+.+....+.+++.+ ..+.||++
T Consensus        90 aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et  169 (749)
T KOG0705|consen   90 AQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYET  169 (749)
T ss_pred             hhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeec
Confidence            5677899999999999999999998877766665444  78899999876442  2355555555555544 45799999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                      +|.+|.++..+|+.+..++....+.
T Consensus       170 ~atyGlnv~rvf~~~~~k~i~~~~~  194 (749)
T KOG0705|consen  170 CATYGLNVERVFQEVAQKIVQLRKY  194 (749)
T ss_pred             chhhhhhHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999987766544

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.03  E-value=1.7e-09  Score=93.58  Aligned_cols=154  Identities=15%  Similarity=0.164  Sum_probs=110.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhh--
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYY--   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~--   95 (208)
                      +..++.++|.-++||  +|+++.+....--..|.+.++...-.+...+..  +++.|.||--...      ...+.|+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            356799999999999  467766655555566767677777666666666  8999999943221      2333444  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      ..+|+++-|.|.+|.+--  +. .--++.+.  +.|++++-|+.|..+++.+. -+.+++.+.+|++++++||++|.|++
T Consensus        80 ~~~D~ivnVvDAtnLeRn--Ly-ltlQLlE~--g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          80 GKPDLIVNVVDATNLERN--LY-LTLQLLEL--GIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             CCCCEEEEEcccchHHHH--HH-HHHHHHHc--CCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence            357999999999986432  21 11222222  78999999999987655554 34566889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++...+.+....
T Consensus       154 ~l~~~i~~~~~~  165 (653)
T COG0370         154 ELKRAIIELAES  165 (653)
T ss_pred             HHHHHHHHhccc
Confidence            999988865443

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.02  E-value=1.1e-09  Score=92.99  Aligned_cols=106  Identities=15%  Similarity=0.124  Sum_probs=74.5

Q ss_pred             EEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCC-CEEEEEeC
Q psy2518          67 KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-------AAHSWKMKVENECGEI-PTVLVQNK  138 (208)
Q Consensus        67 ~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-piivvgnK  138 (208)
                      ..+......+.+.||||++.|.......++.+|++++|+|.++ .+|+       ...+.+.... .. .. ++|++.||
T Consensus        78 ~~~~~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~-~~-gi~~iIV~vNK  154 (447)
T PLN00043         78 WKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF-TL-GVKQMICCCNK  154 (447)
T ss_pred             EEecCCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH-Hc-CCCcEEEEEEc
Confidence            3445566789999999999999888888999999999999987 3333       2222222111 11 45 57889999


Q ss_pred             CCCCCCCCC-------CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518         139 IDLLDQSVV-------APEEADLLSRALG-----CRLMRTSVKEDINVNS  176 (208)
Q Consensus       139 ~Dl~~~~~v-------~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~  176 (208)
                      .|+.+. ..       ..++...++++.|     ++|+++||++|.|+.+
T Consensus       155 mD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        155 MDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             ccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            997521 11       1345666666666     5699999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.01  E-value=1.3e-09  Score=96.55  Aligned_cols=103  Identities=18%  Similarity=0.169  Sum_probs=65.6

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--  149 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--  149 (208)
                      ...++.++||||++.|.......+..+|++++|+|.+....-+....+ ..+ ......|++++.||+|+.+...-..  
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~-~~~-~~~~~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHS-FIA-SLLGIRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHH-HHH-HHhCCCeEEEEEEecccccchhHHHHH
Confidence            344678999999998866555668899999999999764322111111 111 1122357889999999853211111  


Q ss_pred             --HHHHHHHHHhCC---eEEEEecCCCCCHHH
Q psy2518         150 --EEADLLSRALGC---RLMRTSVKEDINVNS  176 (208)
Q Consensus       150 --~~~~~~~~~~~~---~~~e~Sa~~~~~i~~  176 (208)
                        ++...+.+..++   +++.+||++|.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              122233344454   589999999999885

>smart00275 G_alpha G protein alpha subunit

Probab=99.01  E-value=7.8e-09  Score=84.98  Aligned_cols=117  Identities=15%  Similarity=0.150  Sum_probs=85.7

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC--CCCEEEEEeCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----------DSFEAAHSWKMKVENECG--EIPTVLVQNKID  140 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~--~~piivvgnK~D  140 (208)
                      .+.+.+||.+|+...++.|..++.+++++++|.|+++-          ..+......+..+.+...  +.|+++++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            45689999999999999999999999999999999973          345555555666655432  799999999999


Q ss_pred             CCCC---------------CCCCHHHHHHHHHH-----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         141 LLDQ---------------SVVAPEEADLLSRA-----------LGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       141 l~~~---------------~~v~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      +-.+               -....+.+..+...           ..+..+.++|.+-.++..+|+.+...++...
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~  337 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN  337 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence            7321               01233444444332           1134578899999999999999888877654

Subunit of G proteins that contains the guanine nucleotide binding site

>PLN03126 Elongation factor Tu; Provisional

Probab=99.01  E-value=1.7e-09  Score=92.38  Aligned_cols=146  Identities=12%  Similarity=0.076  Sum_probs=88.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeec------Ccc----------ccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDR------DSF----------EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~------~~f----------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      -...+++.++|....||  +..+++.      +..          .++....+.++.  ....++.+...+.++||||++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~--~~~~~~~~~~~i~liDtPGh~  155 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINT--ATVEYETENRHYAHVDCPGHA  155 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEE--EEEEEecCCcEEEEEECCCHH
Confidence            35578999999999999  2233332      111          112222222222  222333344578999999999


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCC---CHHHHHHHHHHh--
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVV---APEEADLLSRAL--  159 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v---~~~~~~~~~~~~--  159 (208)
                      .|.......+..+|++++|+|.++...-+ ..+++..+...  ..| ++++.||+|+.+....   ..++...+.+..  
T Consensus       156 ~f~~~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~  232 (478)
T PLN03126        156 DYVKNMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV--GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEF  232 (478)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCC
Confidence            98776667778999999999988653322 23333333322  567 7889999998542111   112334444443  


Q ss_pred             ---CCeEEEEecCCCCCH
Q psy2518         160 ---GCRLMRTSVKEDINV  174 (208)
Q Consensus       160 ---~~~~~e~Sa~~~~~i  174 (208)
                         +++++.+||.+|.++
T Consensus       233 ~~~~~~~vp~Sa~~g~n~  250 (478)
T PLN03126        233 PGDDIPIISGSALLALEA  250 (478)
T ss_pred             CcCcceEEEEEccccccc
Confidence               357999999998543

>PRK12289 GTPase RsgA; Reviewed

Probab=99.01  E-value=3.1e-09  Score=87.40  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=69.1

Q ss_pred             cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeE
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRL  163 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~  163 (208)
                      ..+.+..++++|.+++|+|+.++. ++..+..|+.....  .+.|+++|+||+||.+     .++...+   ...+|+.+
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~-----~~~~~~~~~~~~~~g~~v  152 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVS-----PTEQQQWQDRLQQWGYQP  152 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCC-----hHHHHHHHHHHHhcCCeE
Confidence            345566789999999999999876 55567888776633  3789999999999943     2222333   34568899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +.+||+++.|++++++.+...+
T Consensus       153 ~~iSA~tg~GI~eL~~~L~~ki  174 (352)
T PRK12289        153 LFISVETGIGLEALLEQLRNKI  174 (352)
T ss_pred             EEEEcCCCCCHHHHhhhhccce
Confidence            9999999999999999887543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.00  E-value=1.7e-09  Score=93.50  Aligned_cols=117  Identities=14%  Similarity=0.084  Sum_probs=79.1

Q ss_pred             cceeeeEEEecCceEEEE--EEeee-cCccc-------------------cccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVIT--FSTID-RDSFE-------------------AAHSWKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk~--~~~~~-~~~f~-------------------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      -.+..++.++|..++||+  ..+++ .....                   .......|+.+......++...+++++|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            356889999999999993  12111 01110                   011122344555566667777789999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      ||+..|.......++.+|++++|+|.++... .....++.....  .+.|+++++||+|+..
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~  146 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccC
Confidence            9999888777778999999999999987422 122344443332  2689999999999843

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=98.99  E-value=4.7e-10  Score=100.53  Aligned_cols=117  Identities=16%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             ccceeeeEEEecCceEEEE--EEeeec---------------Cccccc---cccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518          23 EFDAITKAYYRGAQACVIT--FSTIDR---------------DSFEAA---HSWKMKVSIKRTIKECEGEEVRLMLWDTA   82 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk~--~~~~~~---------------~~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~   82 (208)
                      ......+|+++|..++||+  ..+++.               ..|.+.   +..|+........+.+++..+++.+||||
T Consensus        15 ~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTP   94 (720)
T TIGR00490        15 KPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTP   94 (720)
T ss_pred             CcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCC
Confidence            4466899999999999992  233322               122222   34466655555555677888999999999


Q ss_pred             ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      |+..|.......++.+|++++|+|..+....+....|.. ..+  .+.|++++.||+|..
T Consensus        95 G~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~  151 (720)
T TIGR00490        95 GHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRL  151 (720)
T ss_pred             CccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhcc
Confidence            999888878889999999999999987433222222222 211  157889999999974

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>CHL00071 tufA elongation factor Tu

Probab=98.98  E-value=3.5e-09  Score=89.18  Aligned_cols=145  Identities=14%  Similarity=0.085  Sum_probs=88.4

Q ss_pred             ceeeeEEEecCceEEEE--EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ...+++.++|...+||+  ..+++..                ...++..+.+..+.  ....+..+..++.+.||||+..
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChHH
Confidence            45689999999999992  2322221                11122222222222  2233333445678999999988


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC--
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA---PEEADLLSRALG--  160 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~---~~~~~~~~~~~~--  160 (208)
                      |.......+..+|++++|+|......-+ ....+..+...  ..| +|++.||+|+.++....   .++...+.+..+  
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~q-t~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TKEHILLAKQV--GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            8776677788999999999998643222 22233333322  567 77889999985422211   123444444443  


Q ss_pred             ---CeEEEEecCCCCCH
Q psy2518         161 ---CRLMRTSVKEDINV  174 (208)
Q Consensus       161 ---~~~~e~Sa~~~~~i  174 (208)
                         ++++.+||.+|.|+
T Consensus       165 ~~~~~ii~~Sa~~g~n~  181 (409)
T CHL00071        165 GDDIPIVSGSALLALEA  181 (409)
T ss_pred             CCcceEEEcchhhcccc
Confidence               57999999999754

>PRK12740 elongation factor G; Reviewed

Probab=98.98  E-value=4.5e-09  Score=93.80  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=56.4

Q ss_pred             eEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        64 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ...+.+  ..+.+.+|||||+..+.......++.+|++++|+|.++.........|. .+...  +.|++++.||+|+.
T Consensus        52 ~~~~~~--~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~~--~~p~iiv~NK~D~~  125 (668)
T PRK12740         52 ATTCEW--KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEKY--GVPRIIFVNKMDRA  125 (668)
T ss_pred             eEEEEE--CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence            334444  3467999999999988777888899999999999999877665544443 22222  68999999999975

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.98  E-value=2.8e-09  Score=85.71  Aligned_cols=87  Identities=23%  Similarity=0.237  Sum_probs=68.1

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          93 AYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ..++++|++++|+|++++. ++..+.+|+..+...  +.|+++|.||+||.++.  ............+.+++.+||+++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCC
Confidence            3478999999999999988 888888898876543  68999999999995431  111223334456789999999999


Q ss_pred             CCHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTT  183 (208)
Q Consensus       172 ~~i~~~f~~i~~  183 (208)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.98  E-value=3.4e-09  Score=87.76  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=73.4

Q ss_pred             ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q psy2518          83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRA  158 (208)
Q Consensus        83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~  158 (208)
                      ..+.|..+...+++.++++++|+|+.+..     ..|...+.+...+.|+++|+||+|+.. +.+..+...++    +++
T Consensus        49 ~~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        49 NDDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             CHHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHH
Confidence            45788888888999999999999997654     235555655555789999999999965 33444554443    556


Q ss_pred             hCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         159 LGC---RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       159 ~~~---~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      .++   .++++||++|.|++++|+.+.+.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            676   48999999999999999998653

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG1423|consensus

Probab=98.98  E-value=1e-08  Score=81.01  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=95.9

Q ss_pred             cceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------------c
Q psy2518          24 FDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------------A   89 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------------~   89 (208)
                      -.+...|.++|.-++|| + .+...+.+.......+-. ......-.+.....++.++||||.-.-.            .
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq  147 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ  147 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence            36788999999999999 3 354445544443222211 1122222345567789999999942110            0


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC-------------CCC---HHHHH
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS-------------VVA---PEEAD  153 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~-------------~v~---~~~~~  153 (208)
                      .-...+..||++++|+|+++....-+ ...+..+..+. +.|-++|.||.|...++             ++.   .+-.+
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            11234678999999999996432211 12222233332 68999999999975431             111   11111


Q ss_pred             HHHHH------------hCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         154 LLSRA------------LGC-RLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       154 ~~~~~------------~~~-~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ++...            -++ .+|.+||++|.||+++-+++..++.
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            11111            112 4899999999999999999988764

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.97  E-value=1.3e-09  Score=86.69  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=52.1

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      ...++.+|||||+..|...+...++.+|++++|.|..+...-.. ...+..+.+.  +.|++++.||+|+..
T Consensus        62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~~~  130 (270)
T cd01886          62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDRTG  130 (270)
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCCCC
Confidence            45678999999998888888889999999999999987543222 2223333322  689999999999854

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.97  E-value=2.1e-10  Score=85.32  Aligned_cols=111  Identities=13%  Similarity=0.177  Sum_probs=66.1

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHh---hhcCCcEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKA---YYRGAQACV  102 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~---~~~~~d~ii  102 (208)
                      -|+++|.+++||  +|.++..+.+.+++.+...    ...+.+ +...-.+.+.|+||+.+.+.....   +...+.++|
T Consensus         5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II   80 (181)
T PF09439_consen    5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII   80 (181)
T ss_dssp             EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence            478999999999  5677777765554433311    111122 223345899999999988764333   478999999


Q ss_pred             EEEeCCC-hhhHHHHHHHHHHHHh----hcCCCCEEEEEeCCCCCC
Q psy2518         103 ITFSTID-RDSFEAAHSWKMKVEN----ECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus       103 ~v~d~~~-~~s~~~~~~~~~~~~~----~~~~~piivvgnK~Dl~~  143 (208)
                      ||.|.+. +..+..+.+++-.+..    ....+|++|++||+|+..
T Consensus        81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            9999974 4445555443333322    223799999999999854

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG0218 Predicted GTPase [General function prediction only]

Probab=98.96  E-value=1.3e-08  Score=76.21  Aligned_cols=157  Identities=15%  Similarity=0.143  Sum_probs=105.4

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhc
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFD   88 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~   88 (208)
                      +-.-+...-|+++|-|++||  +++.+.+..-....+.|.|.......+.++++   +.+.|.||          ++.+.
T Consensus        18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~   94 (200)
T COG0218          18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK   94 (200)
T ss_pred             hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence            33345667899999999999  45666666656667777776666666677665   78999998          45556


Q ss_pred             chhHhhhc---CCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh----
Q psy2518          89 AITKAYYR---GAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL----  159 (208)
Q Consensus        89 ~~~~~~~~---~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~----  159 (208)
                      .+...|+.   +-.+++++.|.-.+-.-.+  +.+|+.+.     ..|++++.||+|........ +.....++..    
T Consensus        95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~  168 (200)
T COG0218          95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPP  168 (200)
T ss_pred             HHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCC
Confidence            66666664   3567788888876544322  23443332     69999999999975432221 1122233332    


Q ss_pred             CCe--EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         160 GCR--LMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       160 ~~~--~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ...  ++..|+..+.|++++-..|.+.+.
T Consensus       169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         169 PDDQWVVLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             CccceEEEEecccccCHHHHHHHHHHHhh
Confidence            222  788999999999999998877653

>cd01859 MJ1464 MJ1464

Probab=98.95  E-value=2.9e-09  Score=77.85  Aligned_cols=94  Identities=15%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS  167 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  167 (208)
                      +.+.+...+++|++++|+|.+++...... .+...+..  .+.|+++|.||+|+.++..  .+....+....+.+++.+|
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEEEE
Confidence            45667788899999999999876543221 22222211  2689999999999843211  1111123334566899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~  186 (208)
                      |+++.|++++++.+.+.+.
T Consensus        78 a~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          78 AKERLGTKILRRTIKELAK   96 (156)
T ss_pred             ccccccHHHHHHHHHHHHh
Confidence            9999999999999987764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK00049 elongation factor Tu; Reviewed

Probab=98.94  E-value=9.1e-09  Score=86.34  Aligned_cols=143  Identities=13%  Similarity=0.120  Sum_probs=85.5

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeecC----------------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDRD----------------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~~----------------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ...++|.++|....|| + ..++...                ...++....+..+.  ....+.....++.+.||||+..
T Consensus        10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~~   87 (396)
T PRK00049         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHAD   87 (396)
T ss_pred             CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHHH
Confidence            5678999999999999 2 2222221                11112222222222  2333444455678999999988


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCCC---HHHHHHHHHHh---
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVA---PEEADLLSRAL---  159 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v~---~~~~~~~~~~~---  159 (208)
                      |.......+..+|++++|+|.+....-+ ...++..+...  ..|.+ ++.||+|+.++....   .++...+....   
T Consensus        88 f~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~  164 (396)
T PRK00049         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHHc--CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCC
Confidence            8776667788999999999998753222 22333333322  57875 579999985321111   12233333333   


Q ss_pred             --CCeEEEEecCCCC
Q psy2518         160 --GCRLMRTSVKEDI  172 (208)
Q Consensus       160 --~~~~~e~Sa~~~~  172 (208)
                        +++++.+||++|.
T Consensus       165 ~~~~~iv~iSa~~g~  179 (396)
T PRK00049        165 GDDTPIIRGSALKAL  179 (396)
T ss_pred             ccCCcEEEeeccccc
Confidence              3578999999975

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.92  E-value=2.4e-08  Score=75.85  Aligned_cols=153  Identities=16%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCc-ccccc---ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc--------h---
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDS-FEAAH---SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA--------I---   90 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~-f~~~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~---   90 (208)
                      ++|+++|.+|+||  +++.+++.. |....   ..|..  .......+++.  .+.++||||......        +   
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~--~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~   76 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKT--CQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRC   76 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccc--cceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHH
Confidence            3689999999999  345555543 33222   22332  22233334444  589999999643211        1   


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCC------CHHHHHHHHHHhCC
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVV------APEEADLLSRALGC  161 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v------~~~~~~~~~~~~~~  161 (208)
                      ......++|++++|.++.+ .+-.. ...+..+.+..+   -.+++++.|++|......+      .....+.+.+..+-
T Consensus        77 ~~~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~  154 (196)
T cd01852          77 LSLSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGG  154 (196)
T ss_pred             HHhcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCC
Confidence            1122467899999999887 22221 222333433332   3678899999985432211      11334445555555


Q ss_pred             eEEEEec-----CCCCCHHHHHHHHHHHHH
Q psy2518         162 RLMRTSV-----KEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       162 ~~~e~Sa-----~~~~~i~~~f~~i~~~~~  186 (208)
                      .|+..+.     ..+.++.++++.+.+.+.
T Consensus       155 r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~  184 (196)
T cd01852         155 RYVAFNNKAKGEEQEQQVKELLAKVESMVK  184 (196)
T ss_pred             eEEEEeCCCCcchhHHHHHHHHHHHHHHHH
Confidence            6655554     456778888887666654

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK12288 GTPase RsgA; Reviewed

Probab=98.91  E-value=1e-08  Score=84.29  Aligned_cols=88  Identities=23%  Similarity=0.242  Sum_probs=67.2

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC-CCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV-VAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~-v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      ..++|.+++|++.+...++..+..|+.....  .++|+++|+||+||.+... ...++........+++++++||+++.|
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G  195 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG  195 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence            4679999999999988999999999875542  2689999999999954221 011222233345678999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTK  184 (208)
Q Consensus       174 i~~~f~~i~~~  184 (208)
                      ++++++.+...
T Consensus       196 ideL~~~L~~k  206 (347)
T PRK12288        196 LEELEAALTGR  206 (347)
T ss_pred             HHHHHHHHhhC
Confidence            99999988654

>PRK12739 elongation factor G; Reviewed

Probab=98.91  E-value=2.4e-08  Score=89.38  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=74.4

Q ss_pred             ceeeeEEEecCceEEEE--EEeeecC-----c-------------cccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDRD-----S-------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~~-----~-------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      .+.++|.++|..++||+  ..+++..     .             -..+....+.++.....+.++  ..++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence            46889999999999992  2333210     0             001122223333334444444  456899999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ..|.......++.+|++++|+|..+...-+... .+..+.+.  +.|++++.||+|+.
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~~--~~p~iv~iNK~D~~  138 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADKY--GVPRIVFVNKMDRI  138 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECCCCC
Confidence            888888888899999999999998764433322 22223222  68999999999985

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.90  E-value=8.4e-09  Score=92.27  Aligned_cols=140  Identities=14%  Similarity=0.170  Sum_probs=86.2

Q ss_pred             ceeeeEEEecCceEEEE--EEeeec--Ccc----------------ccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDR--DSF----------------EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~f----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      .+..+|.++|..++||+  +.++..  +.-                ..+....+.++.....+.+  ...++.+|||||+
T Consensus         8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~   85 (689)
T TIGR00484         8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGH   85 (689)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCC
Confidence            45789999999999992  233321  100                0011111222222333333  3467899999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---  161 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---  161 (208)
                      ..+.......++.+|++++|+|.++....+...-| ..+.+.  +.|+++++||+|+....  ..+...++...++.   
T Consensus        86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~~~~~--~~~~~~~i~~~l~~~~~  160 (689)
T TIGR00484        86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDKTGAN--FLRVVNQIKQRLGANAV  160 (689)
T ss_pred             cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCce
Confidence            88887788899999999999999886555443333 233322  68999999999986422  22333344444443   


Q ss_pred             -eEEEEecCCC
Q psy2518         162 -RLMRTSVKED  171 (208)
Q Consensus       162 -~~~e~Sa~~~  171 (208)
                       ..+.+||..+
T Consensus       161 ~~~ipis~~~~  171 (689)
T TIGR00484       161 PIQLPIGAEDN  171 (689)
T ss_pred             eEEeccccCCC
Confidence             2456666555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.88  E-value=2.9e-08  Score=84.45  Aligned_cols=111  Identities=14%  Similarity=0.158  Sum_probs=74.0

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR-DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PE  150 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~  150 (208)
                      ..+.+.||||++.|.......+..+|++++|.|.++. ...+. .+.+. +.....-.|++++.||+|+.+.....  .+
T Consensus       117 ~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        117 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMKLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             ceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence            3689999999999877666777899999999999874 12221 12222 22222235689999999985421110  11


Q ss_pred             HHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         151 EADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       151 ~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +..++.+.   .+.+++.+||++|.|++++++.|.+.+.
T Consensus       195 ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        195 EIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            22222222   2468999999999999999998876543

>KOG3886|consensus

Probab=98.86  E-value=3.5e-09  Score=80.43  Aligned_cols=141  Identities=20%  Similarity=0.273  Sum_probs=86.9

Q ss_pred             eeeEEEecCceEEEEEEeeecCccc-----cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-----hhHhhhc
Q psy2518          27 ITKAYYRGAQACVITFSTIDRDSFE-----AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-----ITKAYYR   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~~~~~~~~~f~-----~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-----~~~~~~~   96 (208)
                      .-||++.|.+|+||+.+|  .-.|.     +...++-.+|+....+.+-| ++.+++||++|++.+..     .....++
T Consensus         4 ~kKvlLMGrsGsGKsSmr--siiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~   80 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMR--SIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFR   80 (295)
T ss_pred             cceEEEeccCCCCccccc--hhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhe
Confidence            458999999999995443  22221     12222222244444444433 45699999999985432     2335688


Q ss_pred             CCcEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHH----HHHHHHhCCeEEEEe
Q psy2518          97 GAQACVITFSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEA----DLLSRALGCRLMRTS  167 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~----~~~~~~~~~~~~e~S  167 (208)
                      +.++.++|||++..+--.++   .+-++.+.++.|...+.+..+|.||...  +.+.-++.    ..+.+..++.++.+|
T Consensus        81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts  160 (295)
T KOG3886|consen   81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS  160 (295)
T ss_pred             eheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence            99999999999987543333   4445677788888889999999999432  22211111    222222345677776


Q ss_pred             cCC
Q psy2518         168 VKE  170 (208)
Q Consensus       168 a~~  170 (208)
                      --+
T Consensus       161 iwD  163 (295)
T KOG3886|consen  161 IWD  163 (295)
T ss_pred             hhh
Confidence            654

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.85  E-value=3.7e-09  Score=82.43  Aligned_cols=162  Identities=17%  Similarity=0.189  Sum_probs=103.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeE-EEEECCeEEEEEEEeCCChhh-------hcchhHhhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRT-IKECEGEEVRLMLWDTAGQEE-------FDAITKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~   95 (208)
                      ..++++++|++|+||  +++.++++...+...-.+|.+.... ...++++  .+.+|||||.+.       ++.+...++
T Consensus        38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            468899999999999  4666665444443333333332222 2233443  489999999654       666777889


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--------CCCCHH-------HHHHHHHHh-
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--------SVVAPE-------EADLLSRAL-  159 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--------~~v~~~-------~~~~~~~~~-  159 (208)
                      ...|.++.+.+..|+.=--. ..++.++.....+.+++++.|.+|....        .+.+..       .+....+.. 
T Consensus       116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q  194 (296)
T COG3596         116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQ  194 (296)
T ss_pred             hhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998742111 1233344433335899999999997432        122222       122222211 


Q ss_pred             CC-eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         160 GC-RLMRTSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       160 ~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      .. +++..|+..+-|++++...+++.+.....
T Consensus       195 ~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~r  226 (296)
T COG3596         195 EVKPVVAVSGRLPWGLKELVRALITALPVEAR  226 (296)
T ss_pred             hcCCeEEeccccCccHHHHHHHHHHhCccccc
Confidence            13 78888899999999999999998875433

>PLN03127 Elongation factor Tu; Provisional

Probab=98.84  E-value=2.7e-08  Score=84.51  Aligned_cols=157  Identities=13%  Similarity=0.105  Sum_probs=89.6

Q ss_pred             cceeeeEEEecCceEEE-EE-Eeee----------------cCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          24 FDAITKAYYRGAQACVI-TF-STID----------------RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk-~~-~~~~----------------~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      -...++|.++|....|| ++ .++.                .+...++..+.+..+.  ....+.....++.+.||||+.
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence            45578899999999999 22 2221                1111222223333333  333444455678999999998


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCCH---HHHHHHHHHh--
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVAP---EEADLLSRAL--  159 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~~---~~~~~~~~~~--  159 (208)
                      .|..........+|++++|.|.++...-+ ..+.+..+...  +.| +|++.||+|+.++....+   ++..++....  
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~  212 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQV--GVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF  212 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence            87665555567899999999987643222 12222222222  578 578899999854222111   1222233222  


Q ss_pred             ---CCeEEEEecC---CCCC-------HHHHHHHHHHHH
Q psy2518         160 ---GCRLMRTSVK---EDIN-------VNSIFRYLTTKC  185 (208)
Q Consensus       160 ---~~~~~e~Sa~---~~~~-------i~~~f~~i~~~~  185 (208)
                         .++++.+||.   +|.|       +.++++.+.+.+
T Consensus       213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence               2478888876   4555       556666555443

>PRK09866 hypothetical protein; Provisional

Probab=98.83  E-value=7.1e-08  Score=83.71  Aligned_cols=110  Identities=16%  Similarity=0.136  Sum_probs=74.1

Q ss_pred             EEEEEEeCCChhhh-----cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA  148 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~  148 (208)
                      .++.+.||||....     .......+..+|++++|.|.++..+..+. .....+.+...+.|+++|.||+|+.++..-.
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            46789999997432     22334578999999999999875444332 2233343332236999999999985322223


Q ss_pred             HHHHHHHHHHh----C--C-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         149 PEEADLLSRAL----G--C-RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       149 ~~~~~~~~~~~----~--~-~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      .+....+....    +  . .+|.+||+.|.|++++.+.+...
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            44555543321    2  2 68999999999999999998873

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.83  E-value=2.3e-08  Score=85.05  Aligned_cols=107  Identities=12%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             EECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCC-EEEEEeCCC
Q psy2518          68 ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SF---EAAHSWKMKVENECGEIP-TVLVQNKID  140 (208)
Q Consensus        68 ~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-iivvgnK~D  140 (208)
                      .+......+.|.||||+.+|.......+..+|++++|.|.+...   .|   ....+.+..+.. . ..| +|++.||.|
T Consensus        79 ~~~~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~-gi~~iiv~vNKmD  156 (446)
T PTZ00141         79 KFETPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-L-GVKQMIVCINKMD  156 (446)
T ss_pred             EEccCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-c-CCCeEEEEEEccc
Confidence            34455677999999999999887777789999999999998642   11   112222222221 1 455 678999999


Q ss_pred             CCC--CCC----CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518         141 LLD--QSV----VAPEEADLLSRALG-----CRLMRTSVKEDINVNS  176 (208)
Q Consensus       141 l~~--~~~----v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~  176 (208)
                      ...  ..+    ...++..++....+     ++++.+||.+|.|+.+
T Consensus       157 ~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        157 DKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            521  100    11223333333333     5789999999999864

>PRK13768 GTPase; Provisional

Probab=98.83  E-value=3.8e-08  Score=77.73  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             EEEEEeCCChhhh---cchhHhhhc---C--CcEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518          75 RLMLWDTAGQEEF---DAITKAYYR---G--AQACVITFSTIDRDSFEAA--HSWKMKVENECGEIPTVLVQNKIDLLDQ  144 (208)
Q Consensus        75 ~l~i~Dt~g~~~~---~~~~~~~~~---~--~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~piivvgnK~Dl~~~  144 (208)
                      .+.+|||||+.+.   +..++.+++   .  ++++++++|..........  ..|+........+.|+++|.||+|+.+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5789999998664   333433333   2  8999999999654433322  2333333322337999999999998543


Q ss_pred             CCCCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         145 SVVAPEEADL----------------------------LSRALG--CRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       145 ~~v~~~~~~~----------------------------~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ...  +....                            ..+..+  .+++++||+++.|++++.+.+.+.+
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            221  11111                            112234  4789999999999999999987765

>KOG3905|consensus

Probab=98.82  E-value=6.3e-08  Score=77.23  Aligned_cols=168  Identities=15%  Similarity=0.178  Sum_probs=115.2

Q ss_pred             ccCccccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhh
Q psy2518          18 TAGQEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAY   94 (208)
Q Consensus        18 ~~g~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~   94 (208)
                      |-++++..+-=.|+++|+.+.|| ++++-+++.-  .+.+.-|.+|..-.++-+  +.-.++.+|---|.-....+.+..
T Consensus        43 T~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~a  120 (473)
T KOG3905|consen   43 TRTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFA  120 (473)
T ss_pred             hcccccCCCCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhc
Confidence            34455566777899999999999 4444334433  566666666655544432  334578889887766555555544


Q ss_pred             hcCC----cEEEEEEeCCChhh-HHHHHHHHHHHHhhc------------------------------------------
Q psy2518          95 YRGA----QACVITFSTIDRDS-FEAAHSWKMKVENEC------------------------------------------  127 (208)
Q Consensus        95 ~~~~----d~ii~v~d~~~~~s-~~~~~~~~~~~~~~~------------------------------------------  127 (208)
                      +...    ..+|++.|++++.. ++.+++|..-+.++.                                          
T Consensus       121 l~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~  200 (473)
T KOG3905|consen  121 LPATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVV  200 (473)
T ss_pred             ccccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccc
Confidence            4322    47889999999954 456677765542111                                          


Q ss_pred             -------------------C-CCCEEEEEeCCCC----CCCCCCC-------HHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518         128 -------------------G-EIPTVLVQNKIDL----LDQSVVA-------PEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       128 -------------------~-~~piivvgnK~Dl----~~~~~v~-------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                                         + .+|++||.+|||.    ..+....       ....+.||..+|...|.+|+|+..|++-
T Consensus       201 ~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidl  280 (473)
T KOG3905|consen  201 GSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDL  280 (473)
T ss_pred             cCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHH
Confidence                               1 4689999999997    2222222       2346678888999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLS  187 (208)
Q Consensus       177 ~f~~i~~~~~~  187 (208)
                      ++.+|+++.+-
T Consensus       281 lyKYivhr~yG  291 (473)
T KOG3905|consen  281 LYKYIVHRSYG  291 (473)
T ss_pred             HHHHHHHHhcC
Confidence            99999988763

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.81  E-value=3e-08  Score=82.91  Aligned_cols=81  Identities=17%  Similarity=0.116  Sum_probs=55.0

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-cc-----ccccccceeeEEE---------------EECC-eEEEEEEEeCCC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AH-----SWKMKVSIKRTIK---------------ECEG-EEVRLMLWDTAG   83 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~-----~~t~~~~~~~~~~---------------~~~~-~~~~l~i~Dt~g   83 (208)
                      +||.++|..++||  +|+++....+.. .|     .|++|..+....+               ..++ ..+.+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999  467666666542 33     4666643321110               0222 347899999999


Q ss_pred             h----hhhcchhHhh---hcCCcEEEEEEeCC
Q psy2518          84 Q----EEFDAITKAY---YRGAQACVITFSTI  108 (208)
Q Consensus        84 ~----~~~~~~~~~~---~~~~d~ii~v~d~~  108 (208)
                      .    .....+...+   ++++|++++|+|..
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            5    3444566666   88999999999996

>KOG1191|consensus

Probab=98.77  E-value=1.3e-08  Score=84.92  Aligned_cols=167  Identities=14%  Similarity=0.017  Sum_probs=102.1

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccc--cceeeEEEEECCeEEEEEEEeCCChhh-hcc------
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMK--VSIKRTIKECEGEEVRLMLWDTAGQEE-FDA------   89 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~------   89 (208)
                      .+..+.-++|+++|..++||  +++.+..+.-. ...|--|  -|.....++++|.+  +.+.||+|..+ -..      
T Consensus       262 ~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drs-IVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~g  338 (531)
T KOG1191|consen  262 IERLQSGLQIAIVGRPNVGKSSLLNALSREDRS-IVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALG  338 (531)
T ss_pred             HHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCce-EeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHh
Confidence            55667789999999999999  33433333221 1222222  24555666677766  78999999644 111      


Q ss_pred             --hhHhhhcCCcEEEEEEeC--CChhhHHHHHHHHHHHHhhcC-------CCCEEEEEeCCCCCCC-CCCCHHHHHHHHH
Q psy2518          90 --ITKAYYRGAQACVITFST--IDRDSFEAAHSWKMKVENECG-------EIPTVLVQNKIDLLDQ-SVVAPEEADLLSR  157 (208)
Q Consensus        90 --~~~~~~~~~d~ii~v~d~--~~~~s~~~~~~~~~~~~~~~~-------~~piivvgnK~Dl~~~-~~v~~~~~~~~~~  157 (208)
                        -.+..+..||++++|+|.  ++-++-..+...+.....-..       ..|++++.||+|+... ++.+.........
T Consensus       339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~  418 (531)
T KOG1191|consen  339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA  418 (531)
T ss_pred             HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc
Confidence              122346789999999999  444443333333433322221       4899999999999553 2222211111111


Q ss_pred             H-h-CC-eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         158 A-L-GC-RLMRTSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       158 ~-~-~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      . . .+ ...++|+++++|++++.+.+.+.+.....
T Consensus       419 ~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  419 EGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             ccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            1 1 12 34569999999999999999988766543

>KOG1145|consensus

Probab=98.75  E-value=1.7e-07  Score=79.36  Aligned_cols=147  Identities=17%  Similarity=0.174  Sum_probs=94.0

Q ss_pred             EEEecCceEEE-EEE-eeecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          30 AYYRGAQACVI-TFS-TIDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        30 i~~vG~s~~gk-~~~-~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      |-++|---=|| +++ .+...+......-.+.-.+.-..+.. +|+  .+.|.||||+.-|..++..-..-+|++++|+.
T Consensus       156 VTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA  233 (683)
T KOG1145|consen  156 VTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARGANVTDIVVLVVA  233 (683)
T ss_pred             EEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence            56678888888 332 12122222222222211222233334 453  47999999999999999998999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHH-------HHhC--CeEEEEecCCCCCHHH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLS-------RALG--CRLMRTSVKEDINVNS  176 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~-------~~~~--~~~~e~Sa~~~~~i~~  176 (208)
                      .+|.---+.    .+.++.... +.|+|+..||+|.++   -+.+...+-.       +.+|  .+++++||++|.|++.
T Consensus       234 adDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~---a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~  306 (683)
T KOG1145|consen  234 ADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPG---ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDL  306 (683)
T ss_pred             ccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCC---CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHH
Confidence            998532221    223333333 899999999999754   2333333322       2233  3789999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      +-+.+.-..
T Consensus       307 L~eaill~A  315 (683)
T KOG1145|consen  307 LEEAILLLA  315 (683)
T ss_pred             HHHHHHHHH
Confidence            988876553

>KOG1489|consensus

Probab=98.69  E-value=1.5e-07  Score=74.84  Aligned_cols=148  Identities=14%  Similarity=0.119  Sum_probs=95.0

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCcc--cc-----ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc----chhHh
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSF--EA-----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD----AITKA   93 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f--~~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~~~~   93 (208)
                      .+--+=+||--+.|| +++.-+...-  ..     +-.|++|      ++.+++ -.++.+=|.||.-+-.    .+...
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG------~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~  267 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG------TVNYDD-FSQITVADIPGIIEGAHMNKGLGYK  267 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccc------eeeccc-cceeEeccCccccccccccCcccHH
Confidence            344456788888999 3332111111  11     2233333      222222 2238899999864322    23334


Q ss_pred             h---hcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eE
Q psy2518          94 Y---YRGAQACVITFSTIDR---DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RL  163 (208)
Q Consensus        94 ~---~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~  163 (208)
                      |   +..++..++|.|++.+   ..++.+.....++..+..   +.|.++|+||.|+.+.   ......++++...- .+
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V  344 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHV  344 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcE
Confidence            4   4579999999999998   777777666666665554   8999999999998431   12223556666655 49


Q ss_pred             EEEecCCCCCHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      +++||++++++.++.+.+-+
T Consensus       345 ~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  345 VPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             EEeeeccccchHHHHHHHhh
Confidence            99999999999999887654

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.67  E-value=8.9e-08  Score=66.39  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=61.5

Q ss_pred             eEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhh----------hcchhHhhh
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----------FDAITKAYY   95 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----------~~~~~~~~~   95 (208)
                      +|+++|.+++||  +++.+.+..... ...+....+.....+.+++..+  .++||||...          +... ...+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~-~~~~   77 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKF-LEQI   77 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHH-HHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHH-HHHH
Confidence            689999999999  345555432211 1111111122334555667664  6999999532          1122 2334


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK  138 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK  138 (208)
                      ..+|++++|+|.+++.. +.....+..+.   ...|+++|.||
T Consensus        78 ~~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   78 SKSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             CTESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             HHCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            89999999999887422 12223333332   37899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>COG1084 Predicted GTPase [General function prediction only]

Probab=98.65  E-value=3.2e-07  Score=73.38  Aligned_cols=154  Identities=17%  Similarity=0.150  Sum_probs=97.7

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCcccc--ccccccccceeeEEEEE---CCeEEEEEEEeCCCh-hhh----cch----
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEA--AHSWKMKVSIKRTIKEC---EGEEVRLMLWDTAGQ-EEF----DAI----   90 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~g~-~~~----~~~----   90 (208)
                      .+.-+++.|--+||| +|.+-+...-++  .|+=|      .|.+.+   +.....+|+.||||. ++.    +..    
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFT------TK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qA  240 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFT------TKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQA  240 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCcc------ccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHH
Confidence            355689999999999 454444443333  34322      233322   334457899999995 221    111    


Q ss_pred             hHhhhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518          91 TKAYYRGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTS  167 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~S  167 (208)
                      ....-.-+++++|+||.+..-  +.+.-..++.++..... .|+++|.||.|+.+...  .+++......-+. ....++
T Consensus       241 i~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~  317 (346)
T COG1084         241 ILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKIS  317 (346)
T ss_pred             HHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhH--HHHHHHHHHhhcccccccee
Confidence            111123478999999998643  45555666777776665 89999999999854322  2333333444444 578899


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +..+.+++.+-..+....++.
T Consensus       318 ~~~~~~~d~~~~~v~~~a~~~  338 (346)
T COG1084         318 ATKGCGLDKLREEVRKTALEP  338 (346)
T ss_pred             eeehhhHHHHHHHHHHHhhch
Confidence            999999998888777765543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.61  E-value=5.2e-07  Score=76.83  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=110.4

Q ss_pred             ccceeeeEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEEC--CeEEEEEEEeCCChhhhcchhHhhhc--
Q psy2518          23 EFDAITKAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECE--GEEVRLMLWDTAGQEEFDAITKAYYR--   96 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~g~~~~~~~~~~~~~--   96 (208)
                      +....-.|+++|+.++|| + +.++ .+  .+.+.++.|.+|..-.+.-+  ....++.+|--.|...+..+.+..+.  
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L-~~--~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARL-QG--IEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHh-hc--cCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            334456799999999999 3 3443 22  24567888888766554433  23457899998886666666655443  


Q ss_pred             --CCcEEEEEEeCCChhhH-HHHHHHHHHHHhhc----------------------------------------------
Q psy2518          97 --GAQACVITFSTIDRDSF-EAAHSWKMKVENEC----------------------------------------------  127 (208)
Q Consensus        97 --~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~----------------------------------------------  127 (208)
                        .--++++|.|++.|..+ +.+.+|+..+.++.                                              
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence              23578999999999765 34455543331000                                              


Q ss_pred             -------C----------CCCEEEEEeCCCCC----CCCCCC-------HHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         128 -------G----------EIPTVLVQNKIDLL----DQSVVA-------PEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       128 -------~----------~~piivvgnK~Dl~----~~~~v~-------~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                             +          .+|++||++|+|.-    .+..-.       ..-.+.+|..+|+..|.||++...|++-++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                   0          36999999999962    211111       2235667888899999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      +|.+.+....
T Consensus       258 yi~h~l~~~~  267 (472)
T PF05783_consen  258 YILHRLYGFP  267 (472)
T ss_pred             HHHHHhccCC
Confidence            9888876543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=98.58  E-value=8.3e-07  Score=70.94  Aligned_cols=150  Identities=19%  Similarity=0.140  Sum_probs=95.6

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCcccc--ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hhHhhh
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEA--AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------ITKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~~~~~   95 (208)
                      ....+.++|..++|| +++.-+.+...+  .|+=|. .....-.+.++|  .++|+.|+||.-.-.+       ..-...
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTT-l~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTT-LEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCcee-cccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            346799999999999 444444444433  333221 122334445544  4589999998533222       223457


Q ss_pred             cCCcEEEEEEeCCChhh-HHHHHHHHHHH---------------------------------------------------
Q psy2518          96 RGAQACVITFSTIDRDS-FEAAHSWKMKV---------------------------------------------------  123 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s-~~~~~~~~~~~---------------------------------------------------  123 (208)
                      ++||++++|.|+....+ .+.+.+-+...                                                   
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            89999999999986554 32222211111                                                   


Q ss_pred             ---------------HhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         124 ---------------ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       124 ---------------~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                                     ....--.|.+.|.||.|+..     .++...+.+..  .++.+||+.+.|++++.+.+.+.+
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence                           11111368899999999833     55666666554  789999999999999999888765

>PRK00007 elongation factor G; Reviewed

Probab=98.56  E-value=6.5e-07  Score=80.28  Aligned_cols=140  Identities=14%  Similarity=0.190  Sum_probs=84.6

Q ss_pred             ceeeeEEEecCceEEEE--EEeeec--Cc----------------cccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTIDR--DS----------------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~~~--~~----------------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      .+..+|.++|..++||+  ..+++.  +.                ...+....+.++.....+.+.  ..++.+.||||+
T Consensus         8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~   85 (693)
T PRK00007          8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH   85 (693)
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence            46889999999999992  333321  11                001112222223333334443  457899999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---  161 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---  161 (208)
                      ..|.......++.+|++++|+|....-..+...-|. .+.+.  +.|.+++.||+|+....  ..+...++...++.   
T Consensus        86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~~~  160 (693)
T PRK00007         86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGANPV  160 (693)
T ss_pred             HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCCee
Confidence            888776777889999999999988664444333332 23222  68899999999986422  22333334444443   


Q ss_pred             -eEEEEecCCC
Q psy2518         162 -RLMRTSVKED  171 (208)
Q Consensus       162 -~~~e~Sa~~~  171 (208)
                       ..+.+||..+
T Consensus       161 ~~~ipisa~~~  171 (693)
T PRK00007        161 PIQLPIGAEDD  171 (693)
T ss_pred             eEEecCccCCc
Confidence             2355666555

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.55  E-value=5.5e-07  Score=72.41  Aligned_cols=155  Identities=16%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             eeEEEecCceEEE-EEEeeecCcc--ccccc-----cccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhHhh-
Q psy2518          28 TKAYYRGAQACVI-TFSTIDRDSF--EAAHS-----WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITKAY-   94 (208)
Q Consensus        28 ~ki~~vG~s~~gk-~~~~~~~~~f--~~~~~-----~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~~~-   94 (208)
                      --|=+||--++|| ++...+...-  ...|+     |.+|      .+.+ ...-.+.+=|.||.-+-    ..+...| 
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLG------vV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FL  232 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLG------VVRV-DGGESFVVADIPGLIEGASEGVGLGLRFL  232 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCccc------EEEe-cCCCcEEEecCcccccccccCCCccHHHH
Confidence            3455789999999 4432222211  12232     2222      1122 12223778899986332    2244444 


Q ss_pred             --hcCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE-E
Q psy2518          95 --YRGAQACVITFSTIDRDS---FEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM-R  165 (208)
Q Consensus        95 --~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~-e  165 (208)
                        +.++.+++.|.|++..+.   .++......++.++.+   +.|.+||.||+|+....+-.++....+.+..+...+ .
T Consensus       233 rHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~  312 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL  312 (369)
T ss_pred             HHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence              457899999999986553   5666666677777765   899999999999644322223333334444444222 2


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      +||.++.|++++...+.+.+.+..
T Consensus       313 ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         313 ISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             eehhcccCHHHHHHHHHHHHHHhh
Confidence            999999999999999888876654

>cd01858 NGP_1 NGP-1

Probab=98.54  E-value=3.7e-07  Score=66.82  Aligned_cols=85  Identities=13%  Similarity=0.121  Sum_probs=56.8

Q ss_pred             hhhcCCcEEEEEEeCCChhh--HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh----CCeEEEE
Q psy2518          93 AYYRGAQACVITFSTIDRDS--FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL----GCRLMRT  166 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e~  166 (208)
                      ..++++|++++|.|..++..  ...+.+++.   ....+.|+++|.||+|+.+     .++...+...+    ....+.+
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~---~~~~~~p~ilVlNKiDl~~-----~~~~~~~~~~~~~~~~~~~~~i   75 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLK---KEKPHKHLIFVLNKCDLVP-----TWVTARWVKILSKEYPTIAFHA   75 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccCHHHHHHHH---hccCCCCEEEEEEchhcCC-----HHHHHHHHHHHhcCCcEEEEEe
Confidence            35678999999999998743  222333332   2222589999999999843     22223333322    2235789


Q ss_pred             ecCCCCCHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ||+.+.|++++.+.+.+.+
T Consensus        76 Sa~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          76 SINNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             eccccccHHHHHHHHHHHH
Confidence            9999999999999886643

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.54  E-value=3.6e-07  Score=73.48  Aligned_cols=115  Identities=12%  Similarity=0.038  Sum_probs=64.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKA   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~   93 (208)
                      ...++|+++|++|+||  +++++++....  ....+ .+..........+|  ..+.+|||||.......       .+.
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s-~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS-EGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC-cceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            5678999999999999  45555544321  11111 11111111222343  56899999997543221       111


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC---CCCEEEEEeCCCCCC
Q psy2518          94 YY--RGAQACVITFSTIDRDSFEAA-HSWKMKVENECG---EIPTVLVQNKIDLLD  143 (208)
Q Consensus        94 ~~--~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~piivvgnK~Dl~~  143 (208)
                      ++  ...|++|+|.+++... +... ...+..+....+   -.+.|++.|++|...
T Consensus       113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence            22  2699999997665321 2211 233444444433   357899999999653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.51  E-value=4.2e-07  Score=65.36  Aligned_cols=78  Identities=14%  Similarity=0.055  Sum_probs=53.8

Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV  168 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  168 (208)
                      ....+..+|++++|+|..++.+..  .+.+|+...   ..+.|+++|.||+|+.++..  .....+.....+.+++.+||
T Consensus         5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            345678999999999999876644  345555433   13689999999999843221  12333445556678999999


Q ss_pred             CCCCC
Q psy2518         169 KEDIN  173 (208)
Q Consensus       169 ~~~~~  173 (208)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98753

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.50  E-value=5.1e-07  Score=67.05  Aligned_cols=95  Identities=14%  Similarity=0.040  Sum_probs=62.7

Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEE
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM  164 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~  164 (208)
                      .+........++.||++++|+|.+++...... .+..    ...+.|+++|.||+|+.++..  .....++.+..+..++
T Consensus         7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi   79 (171)
T cd01856           7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILGNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVL   79 (171)
T ss_pred             HHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----HhcCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEE
Confidence            34444556778999999999999876543221 1222    222579999999999843211  0111122223345789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .+||+++.|++++...+.+.+.
T Consensus        80 ~iSa~~~~gi~~L~~~l~~~l~  101 (171)
T cd01856          80 FVNAKSGKGVKKLLKAAKKLLK  101 (171)
T ss_pred             EEECCCcccHHHHHHHHHHHHH
Confidence            9999999999999999888754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK13796 GTPase YqeH; Provisional

Probab=98.47  E-value=1.5e-06  Score=72.20  Aligned_cols=93  Identities=19%  Similarity=0.302  Sum_probs=63.8

Q ss_pred             hhhcchhHhhhcCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHHh
Q psy2518          85 EEFDAITKAYYRGAQ-ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRAL  159 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d-~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~~  159 (208)
                      +.|..... .+..++ .+++|+|+.+..     ..|...+.+...+.|+++|+||+||.. +....+....+    ++..
T Consensus        57 ~~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         57 DDFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhc
Confidence            34544333 334445 999999987743     235555555555789999999999954 33444444444    4555


Q ss_pred             CC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         160 GC---RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       160 ~~---~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ++   .++.+||+++.|++++++.+.+.
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~  157 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEKY  157 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence            65   58999999999999999998654

>TIGR00101 ureG urease accessory protein UreG

Probab=98.45  E-value=1.5e-06  Score=66.13  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=55.0

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCCeEEEEecCCCCCHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA--LGCRLMRTSVKEDINVN  175 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~  175 (208)
                      +|.++.|+|+.+.++...  .+..++     ...-+++.||+|+.+......+...+.++.  .+.+++++||++|.|++
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~  185 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLD  185 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHH
Confidence            688999999987665321  111111     223388999999964222233444444444  34699999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCL  186 (208)
Q Consensus       176 ~~f~~i~~~~~  186 (208)
                      ++|+++.+.++
T Consensus       186 el~~~i~~~~~  196 (199)
T TIGR00101       186 TVIDWIEHYAL  196 (199)
T ss_pred             HHHHHHHhhcC
Confidence            99999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.44  E-value=1.7e-06  Score=63.14  Aligned_cols=81  Identities=15%  Similarity=0.036  Sum_probs=55.1

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH----HHHHhCCeEEEEecCCCCCH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL----LSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~Sa~~~~~i  174 (208)
                      |++++|+|..++.+...  .|+........+.|+++|.||+|+..     .++...    +....+..++.+||+++.|+
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl~~-----~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi   73 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADLVP-----KEVLRKWLAYLRHSYPTIPFKISATNGQGI   73 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhcCC-----HHHHHHHHHHHHhhCCceEEEEeccCCcCh
Confidence            68999999988765542  23331111122689999999999843     222222    22233457899999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCL  186 (208)
Q Consensus       175 ~~~f~~i~~~~~  186 (208)
                      +++.+.+.+...
T Consensus        74 ~~L~~~i~~~~~   85 (155)
T cd01849          74 EKKESAFTKQTN   85 (155)
T ss_pred             hhHHHHHHHHhH
Confidence            999999877644

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0094|consensus

Probab=98.44  E-value=9.1e-08  Score=70.90  Aligned_cols=56  Identities=41%  Similarity=0.736  Sum_probs=49.8

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK   59 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~   59 (208)
                      +-++|+.++|++|||||||+|+.++.-++.+.+.....+.....++|.....|--.
T Consensus        64 ~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~d  119 (221)
T KOG0094|consen   64 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIED  119 (221)
T ss_pred             EEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHH
Confidence            56899999999999999999999999999999998888888778889887777654

>KOG1490|consensus

Probab=98.42  E-value=2.4e-06  Score=71.91  Aligned_cols=163  Identities=15%  Similarity=0.102  Sum_probs=104.2

Q ss_pred             eeeEEEecCceEEE-EEEeeecCccccc--cccccccceeeEEE---EECCeEEEEEEEeCCChhhh----cch-----h
Q psy2518          27 ITKAYYRGAQACVI-TFSTIDRDSFEAA--HSWKMKVSIKRTIK---ECEGEEVRLMLWDTAGQEEF----DAI-----T   91 (208)
Q Consensus        27 ~~ki~~vG~s~~gk-~~~~~~~~~f~~~--~~~t~~~~~~~~~~---~~~~~~~~l~i~Dt~g~~~~----~~~-----~   91 (208)
                      +.-.+++|-.++|| +|.+.....-.+.  |.-|      .+.+   +++..-...++.||||....    +..     .
T Consensus       168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFT------TksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI  241 (620)
T KOG1490|consen  168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFT------TKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII  241 (620)
T ss_pred             cCeEEEecCCCCCcHhhcccccccccccCCcccc------cchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence            44578899999999 5544333332222  2211      1222   23445567889999995211    010     1


Q ss_pred             HhhhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH---HHHHhCCeEEEE
Q psy2518          92 KAYYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL---LSRALGCRLMRT  166 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~---~~~~~~~~~~e~  166 (208)
                      .....--.+++++.|++..  -|...--+++..++-...+.|.|+|.||+|+-....++++....   +...-+++++++
T Consensus       242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            1112234567889998763  45555556667776666699999999999986655566554332   333334789999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhhhhhh
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSELRQQEEE  195 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~  195 (208)
                      |+.+.+||.++-....+.++..+-++..+
T Consensus       322 S~~~eegVm~Vrt~ACe~LLa~RVE~Klk  350 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACEALLAARVEQKLK  350 (620)
T ss_pred             cccchhceeeHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999988776444433

>PRK07560 elongation factor EF-2; Reviewed

Probab=98.41  E-value=9.8e-07  Score=79.60  Aligned_cols=116  Identities=18%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             cceeeeEEEecCceEEEE--EEeeec--Cc--------------cccc--cccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          24 FDAITKAYYRGAQACVIT--FSTIDR--DS--------------FEAA--HSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk~--~~~~~~--~~--------------f~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      ..+...|.++|..+.||+  ..+++.  +.              -..+  ..-|+........+.+++..+.+.+.||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            456889999999999992  111111  00              0011  112222111122223466678899999999


Q ss_pred             hhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          84 QEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        84 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      +..|.......++.+|++++|+|......-+...-|... .+.  +.|.+++.||.|+.
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~--~~~~iv~iNK~D~~  152 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE--RVKPVLFINKVDRL  152 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc--CCCeEEEEECchhh
Confidence            998888788889999999999998875443333333322 222  46789999999974

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.39  E-value=1e-06  Score=69.40  Aligned_cols=119  Identities=16%  Similarity=0.138  Sum_probs=69.0

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCccccc--c-ccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAA--H-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----   89 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~--~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----   89 (208)
                      ++++.....++|+++|++|+||  +++.+.+......  + ..|..  ........++  ..+.+|||||......    
T Consensus        23 ~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~--~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~   98 (249)
T cd01853          23 KGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLR--VREVSGTVDG--FKLNIIDTPGLLESVMDQRV   98 (249)
T ss_pred             HhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEE--EEEEEEEECC--eEEEEEECCCcCcchhhHHH
Confidence            4567778889999999999999  3455444433221  1 22222  1122223344  4689999999654310    


Q ss_pred             ------hhHhhhc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCC
Q psy2518          90 ------ITKAYYR--GAQACVITFSTIDR-DSFEAAHSWKMKVENECG---EIPTVLVQNKIDLL  142 (208)
Q Consensus        90 ------~~~~~~~--~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~  142 (208)
                            ....+++  ..|++++|..++.. ..+.+ ...+..+.+..+   -.++++|.||+|..
T Consensus        99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853          99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence                  1122332  67888888777643 22221 233333433333   35799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.38  E-value=3.8e-06  Score=70.19  Aligned_cols=128  Identities=16%  Similarity=0.176  Sum_probs=87.7

Q ss_pred             ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518          59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK  138 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK  138 (208)
                      |+.+..|...++.+.++++|.||||+-.|.......++=.|++++++|..+..=-+. +..+.+....  ..+.|+|.||
T Consensus        53 GITILaKnTav~~~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl~~--gL~PIVVvNK  129 (603)
T COG1217          53 GITILAKNTAVNYNGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQT-RFVLKKALAL--GLKPIVVINK  129 (603)
T ss_pred             CcEEEeccceeecCCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCch-hhhHHHHHHc--CCCcEEEEeC
Confidence            445566666666666889999999999999999999999999999999987421111 1111121111  6777889999


Q ss_pred             CCCCCCCC--CCHHHHHHHH------HHhCCeEEEEecCCC----------CCHHHHHHHHHHHHHHHh
Q psy2518         139 IDLLDQSV--VAPEEADLLS------RALGCRLMRTSVKED----------INVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       139 ~Dl~~~~~--v~~~~~~~~~------~~~~~~~~e~Sa~~~----------~~i~~~f~~i~~~~~~~~  189 (208)
                      .|.+..|.  |-.+-...|.      .+++++++..||+.|          .+..-+|+.|++.+....
T Consensus       130 iDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         130 IDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence            99866442  1112122222      234678999999987          367888999888876543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.37  E-value=2.6e-06  Score=68.81  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=80.2

Q ss_pred             cCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHH--HHHHHHH
Q psy2518          47 RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH--SWKMKVE  124 (208)
Q Consensus        47 ~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~--~~~~~~~  124 (208)
                      -+.+..+....+.+|+-.+.+..  .+-++.|-||||++.|.+..-.-.+.||++|++.|.-..- .+..+  .++..+.
T Consensus        61 vDGL~AEREQGITIDVAYRyFsT--~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLL  137 (431)
T COG2895          61 VDGLEAEREQGITIDVAYRYFST--EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLL  137 (431)
T ss_pred             hhhhHHHHhcCceEEEEeeeccc--ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHh
Confidence            45555555555555655554444  4445899999999999876666678899999999984321 11111  1222222


Q ss_pred             hhcCCCCEEEEEeCCCCCCCCCCC----HHHHHHHHHHhCC---eEEEEecCCCCCHH
Q psy2518         125 NECGEIPTVLVQNKIDLLDQSVVA----PEEADLLSRALGC---RLMRTSVKEDINVN  175 (208)
Q Consensus       125 ~~~~~~piivvgnK~Dl~~~~~v~----~~~~~~~~~~~~~---~~~e~Sa~~~~~i~  175 (208)
                         +=..+++..||.||.+-.+-.    .++-..++.+++.   .++.+||..|.||-
T Consensus       138 ---GIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         138 ---GIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             ---CCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence               235678888999996532211    2334457777775   68999999999875

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.36  E-value=3e-06  Score=67.80  Aligned_cols=89  Identities=17%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRLMR  165 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e  165 (208)
                      ......++.+|++++|.|..++.+..+  .++....   .+.|+++|.||+|+.+     .++...+   .+..+.+++.
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~-----~~~~~~~~~~~~~~~~~vi~   82 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLAD-----PAVTKQWLKYFEEKGIKALA   82 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCC-----HHHHHHHHHHHHHcCCeEEE
Confidence            345667899999999999987655332  1222222   2589999999999843     2222222   2234567899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +||+++.|++++.+.+.+.+..
T Consensus        83 iSa~~~~gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        83 INAKKGKGVKKIIKAAKKLLKE  104 (276)
T ss_pred             EECCCcccHHHHHHHHHHHHHH
Confidence            9999999999999988777654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=4.1e-06  Score=69.01  Aligned_cols=114  Identities=17%  Similarity=0.183  Sum_probs=73.2

Q ss_pred             eeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhh---HHH---HHHHHHHHHhhcCCCCEEEEE
Q psy2518          63 KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS---FEA---AHSWKMKVENECGEIPTVLVQ  136 (208)
Q Consensus        63 ~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~~---~~~~~~~~~~~~~~~piivvg  136 (208)
                      ......+....+.+.|.|+||+..|-.-.-.-.+.||++++|.|..+.+.   |..   .++ ...+.+..+-..+|++.
T Consensus        74 ~~~~~~fet~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlGi~~lIVav  152 (428)
T COG5256          74 DVAHSKFETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLGIKQLIVAV  152 (428)
T ss_pred             EEEEEEeecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcCCceEEEEE
Confidence            34444555666789999999998877655556788999999999987631   111   111 11122223345678889


Q ss_pred             eCCCCCCCCCCCHHH----HHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy2518         137 NKIDLLDQSVVAPEE----ADLLSRALG-----CRLMRTSVKEDINVNSI  177 (208)
Q Consensus       137 nK~Dl~~~~~v~~~~----~~~~~~~~~-----~~~~e~Sa~~~~~i~~~  177 (208)
                      ||.|+.+.++-.-++    ...+.+..|     ++|+.+||..|.|+.+.
T Consensus       153 NKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~  202 (428)
T COG5256         153 NKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK  202 (428)
T ss_pred             EcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence            999986543322222    222444444     46999999999998654

>KOG1144|consensus

Probab=98.33  E-value=4.1e-06  Score=73.37  Aligned_cols=111  Identities=17%  Similarity=0.254  Sum_probs=77.3

Q ss_pred             EEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-CCCC-----
Q psy2518          76 LMLWDTAGQEEFDAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-DQSV-----  146 (208)
Q Consensus        76 l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-~~~~-----  146 (208)
                      +.++||||++.|..++.....-+|.+|+|.|+-+   +++.+.+..    +...  +.|+||..||.|.. ..+.     
T Consensus       542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l----LR~r--ktpFivALNKiDRLYgwk~~p~~~  615 (1064)
T KOG1144|consen  542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL----LRMR--KTPFIVALNKIDRLYGWKSCPNAP  615 (1064)
T ss_pred             eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHH----HHhc--CCCeEEeehhhhhhcccccCCCch
Confidence            7889999999999999999999999999999965   344444322    2111  79999999999952 1100     


Q ss_pred             -----------CCH-------HHHHHHHHH-h-----------C--CeEEEEecCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2518         147 -----------VAP-------EEADLLSRA-L-----------G--CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ  192 (208)
Q Consensus       147 -----------v~~-------~~~~~~~~~-~-----------~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~  192 (208)
                                 +-.       ..+.+|+.+ +           +  +.++.+||.+|.||-+|+..|++.....+.++
T Consensus       616 i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~k  693 (1064)
T KOG1144|consen  616 IVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEK  693 (1064)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHH
Confidence                       000       011112211 0           1  24679999999999999999999877766543

>PTZ00416 elongation factor 2; Provisional

Probab=98.33  E-value=8.7e-07  Score=80.89  Aligned_cols=67  Identities=19%  Similarity=0.274  Sum_probs=52.2

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ...+.+.||||+..|.......++.+|++++|+|..+.-..+...-| ..+.+.  +.|++++.||+|+.
T Consensus        91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhhh
Confidence            67899999999998888788889999999999999886444333333 333332  58999999999984

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.33  E-value=9.7e-07  Score=80.70  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=53.4

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ..+.+++.||||+..|.......++.+|++++|+|....-......-|......   +.|++++.||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CCCEEEEEECCccc
Confidence            467889999999999988788888999999999999876544433334332222   68999999999975

>KOG4273|consensus

Probab=98.28  E-value=2.4e-06  Score=66.08  Aligned_cols=154  Identities=14%  Similarity=0.115  Sum_probs=89.5

Q ss_pred             EEEecCceE--EE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          30 AYYRGAQAC--VI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        30 i~~vG~s~~--gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      ++++|-+|+  |+  ++.++....|..+....-.++++-.++....-.-.+.++-..-.+.+.-..........+++.||
T Consensus         7 ~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~vmvf   86 (418)
T KOG4273|consen    7 ALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFVMVF   86 (418)
T ss_pred             EEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEEEEE
Confidence            567899998  88  34555566666544433333443333322111112222222222222222223344568899999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC---------------------------C-------------
Q psy2518         106 STIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ---------------------------S-------------  145 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~---------------------------~-------------  145 (208)
                      |++....+..+..|+....-..-+ -.+++|||.|....                           .             
T Consensus        87 dlse~s~l~alqdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssllgs  165 (418)
T KOG4273|consen   87 DLSEKSGLDALQDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSLLGS  165 (418)
T ss_pred             eccchhhhHHHHhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccccccccc
Confidence            999999999999998754322112 24667999995211                           0             


Q ss_pred             ----CCCHHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHHH
Q psy2518         146 ----VVAPEEADLLSRALGCRLMRTSVKED------------INVNSIFRYLTTK  184 (208)
Q Consensus       146 ----~v~~~~~~~~~~~~~~~~~e~Sa~~~------------~~i~~~f~~i~~~  184 (208)
                          ......+.+|+.++|+.++|.||.+.            .||+.+|..+--.
T Consensus       166 edasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ah  220 (418)
T KOG4273|consen  166 EDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAH  220 (418)
T ss_pred             ccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhc
Confidence                01223467788999999999999542            4777777765443

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=9.6e-06  Score=67.36  Aligned_cols=146  Identities=12%  Similarity=0.144  Sum_probs=89.8

Q ss_pred             ecCceEEEEEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh--
Q psy2518          33 RGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR--  110 (208)
Q Consensus        33 vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~--  110 (208)
                      -|++...|.+.-...+...++-...+.+|...-....+  ...+.+.|++|++++-+..-.-+...|.+++|.+.++.  
T Consensus        11 HgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~--d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~   88 (447)
T COG3276          11 HGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLE--DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLM   88 (447)
T ss_pred             ccchhhhhhhcccccccchhhhhcCceEeeeeEeccCC--CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcc
Confidence            34544444344334555555444433334333333333  33789999999998876566667789999999999653  


Q ss_pred             -hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         111 -DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       111 -~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                       ++-+.+     .+.+..+-...++|.||+|..+...+ ++..++....   ...++|.+|+++|.||+++-+.+.....
T Consensus        89 ~qtgEhL-----~iLdllgi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276          89 AQTGEHL-----LILDLLGIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             hhhHHHH-----HHHHhcCCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence             333332     12233334556999999998653211 1111222222   2358899999999999999999988874

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.23  E-value=1.1e-05  Score=61.88  Aligned_cols=56  Identities=16%  Similarity=0.259  Sum_probs=41.8

Q ss_pred             CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ..|.+++.||+|+.+......++..+..++.+  .+++++||++|.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999996533333344444444443  689999999999999999998774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG0082|consensus

Probab=98.21  E-value=2.7e-05  Score=63.61  Aligned_cols=118  Identities=19%  Similarity=0.193  Sum_probs=83.7

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhH----------HHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF----------EAAHSWKMKVENECG--EIPTVLVQNKI  139 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~----------~~~~~~~~~~~~~~~--~~piivvgnK~  139 (208)
                      +...+.+.|++||..-+.-|..++.+++++|||.++++-+-.          .+....++.+.++.-  +.++|+..||.
T Consensus       193 k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~  272 (354)
T KOG0082|consen  193 KGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKK  272 (354)
T ss_pred             CCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecH
Confidence            446789999999988888899999999999999999864321          122334555544433  89999999999


Q ss_pred             CCCCC--------------C-CCCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         140 DLLDQ--------------S-VVAPEEADLLSRAL----------GCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       140 Dl~~~--------------~-~v~~~~~~~~~~~~----------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      ||-++              . ....+++..+....          .+-+..++|.+-.+|+.+|..+.+.+....
T Consensus       273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n  347 (354)
T KOG0082|consen  273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN  347 (354)
T ss_pred             HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence            98322              1 12344444443321          234567899999999999999988887543

>PRK01889 GTPase RsgA; Reviewed

Probab=98.21  E-value=6.9e-06  Score=68.06  Aligned_cols=83  Identities=16%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~  173 (208)
                      ..++|.+++|++++.+-+...+..++......  +.|.++|.||+||.+.   ..+....+.. ..+++++.+||+++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~~~---~~~~~~~~~~~~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLCED---AEEKIAEVEALAPGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcCCC---HHHHHHHHHHhCCCCcEEEEECCCCcc
Confidence            57899999999998665666667766665544  6788999999999542   1112222222 3467899999999999


Q ss_pred             HHHHHHHHH
Q psy2518         174 VNSIFRYLT  182 (208)
Q Consensus       174 i~~~f~~i~  182 (208)
                      ++++...+.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999888764

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.19  E-value=8.5e-06  Score=65.61  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=62.8

Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH---HHHhCCeEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL---SRALGCRLMR  165 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~---~~~~~~~~~e  165 (208)
                      ......++.+|++++|.|..++.+..+  .++.....   +.|+++|.||+|+.+.     +....+   ....+.+++.
T Consensus        16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~---~kp~iiVlNK~DL~~~-----~~~~~~~~~~~~~~~~vi~   85 (287)
T PRK09563         16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG---NKPRLLILNKSDLADP-----EVTKKWIEYFEEQGIKALA   85 (287)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC---CCCEEEEEEchhcCCH-----HHHHHHHHHHHHcCCeEEE
Confidence            345667889999999999987754332  22223222   5899999999998432     222222   2334567899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +||+++.|++++.+.+.+.+...
T Consensus        86 vSa~~~~gi~~L~~~l~~~l~~~  108 (287)
T PRK09563         86 INAKKGQGVKKILKAAKKLLKEK  108 (287)
T ss_pred             EECCCcccHHHHHHHHHHHHHHH
Confidence            99999999999999887776543

>cd01882 BMS1 Bms1

Probab=98.19  E-value=8.4e-06  Score=63.32  Aligned_cols=136  Identities=12%  Similarity=0.026  Sum_probs=73.3

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ....|.++|.+++|| ++...+.+.+... .....|.    ..+ ..+...++.+.||+|..  .. .....+.+|++++
T Consensus        38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDvVll  109 (225)
T cd01882          38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADLVLL  109 (225)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCEEEE
Confidence            346789999999999 3321122222111 1111121    111 22245567899999864  22 2234688999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcCCCCE-EEEEeCCCCCCCCCCCH---HHHHH-HHHH--hCCeEEEEecCCCC
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQSVVAP---EEADL-LSRA--LGCRLMRTSVKEDI  172 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgnK~Dl~~~~~v~~---~~~~~-~~~~--~~~~~~e~Sa~~~~  172 (208)
                      ++|.+........ .++..+...  ..|. ++|.||.|+.+....-.   ++.+. +..+  .+.+++.+||++.-
T Consensus       110 viDa~~~~~~~~~-~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         110 LIDASFGFEMETF-EFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEecCcCCCHHHH-HHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999865433221 222223222  4564 55999999853211111   11111 2221  13589999999884

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=98.15  E-value=3.6e-06  Score=64.75  Aligned_cols=156  Identities=16%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCc-cccccc-cccccceeeEEEEECCeEEEEEEEeCCChhhh--------cch---hH
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDS-FEAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--------DAI---TK   92 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~---~~   92 (208)
                      ++|+++|++|+||  +.+.+++.. |..... ..+..........++|..  +.++||||.-..        ..+   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            4799999999999  234333333 332211 111112333344666755  789999994211        111   11


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCC-------HHHHHHHHHHhCCe
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVA-------PEEADLLSRALGCR  162 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~-------~~~~~~~~~~~~~~  162 (208)
                      ....+.|++|+|+.++ +-+-.. ...+..+.+..+   -..++||.|..|......+.       .+....+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            2345789999999998 333222 122233333333   24578888888754433211       12234455666767


Q ss_pred             EEEEecC------CCCCHHHHHHHHHHHHHH
Q psy2518         163 LMRTSVK------EDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       163 ~~e~Sa~------~~~~i~~~f~~i~~~~~~  187 (208)
                      |+..+.+      ....+.+++..+-+.+.+
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence            8877776      234567777765555443

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.14  E-value=2.6e-05  Score=64.96  Aligned_cols=157  Identities=10%  Similarity=0.059  Sum_probs=95.9

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecC----ccc-----------------cccccccccce---eeEEEEE-CCeEEE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRD----SFE-----------------AAHSWKMKVSI---KRTIKEC-EGEEVR   75 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~----~f~-----------------~~~~~t~~~~~---~~~~~~~-~~~~~~   75 (208)
                      +....+=|-++|+...||  ++++|...    .-.                 .....|...-+   ....+.. ++....
T Consensus        13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~   92 (492)
T TIGR02836        13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK   92 (492)
T ss_pred             HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence            445667889999999999  34555554    111                 01112332223   2223333 566788


Q ss_pred             EEEEeCCChhhhcch-----------------------------hHhhhc-CCcEEEEEE-eCC----ChhhHHHH-HHH
Q psy2518          76 LMLWDTAGQEEFDAI-----------------------------TKAYYR-GAQACVITF-STI----DRDSFEAA-HSW  119 (208)
Q Consensus        76 l~i~Dt~g~~~~~~~-----------------------------~~~~~~-~~d~ii~v~-d~~----~~~s~~~~-~~~  119 (208)
                      +.+.||+|-..-..+                             .+..+. .+++.++|. |.+    .++.+... .+|
T Consensus        93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~  172 (492)
T TIGR02836        93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV  172 (492)
T ss_pred             EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence            999999984321110                             223455 899999998 664    12334333 567


Q ss_pred             HHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHHH
Q psy2518         120 KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED--INVNSIFRYLTT  183 (208)
Q Consensus       120 ~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~--~~i~~~f~~i~~  183 (208)
                      +.++++.  +.|++++.||.|-..  ..+.+.+.++..+++.+++.+|+..-  ..|..+++.++.
T Consensus       173 i~eLk~~--~kPfiivlN~~dp~~--~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~  234 (492)
T TIGR02836       173 IEELKEL--NKPFIILLNSTHPYH--PETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY  234 (492)
T ss_pred             HHHHHhc--CCCEEEEEECcCCCC--chhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence            7777766  799999999999422  12555566777778888888887654  355555555443

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>KOG0084|consensus

Probab=98.11  E-value=7.2e-07  Score=66.27  Aligned_cols=60  Identities=33%  Similarity=0.752  Sum_probs=52.3

Q ss_pred             cccccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccccc
Q psy2518           2 INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVS   61 (208)
Q Consensus         2 ~~~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~   61 (208)
                      .+..++|..++|++|||||||+|+..+.-++.|..|+...+......+|+....|--.++
T Consensus        49 rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~  108 (205)
T KOG0084|consen   49 RTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEID  108 (205)
T ss_pred             EEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhh
Confidence            456789999999999999999999999999999999999888888888987766665444

>PTZ00258 GTP-binding protein; Provisional

Probab=98.10  E-value=2.4e-05  Score=65.21  Aligned_cols=85  Identities=13%  Similarity=0.064  Sum_probs=49.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCe---------------EEEEEEEeCCCh
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQ   84 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~   84 (208)
                      +...-+||.++|..++||  +|+.+....-. .+|+ ....+-..-.+.+.+.               ..++++.||||.
T Consensus        17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~p-ftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGL   95 (390)
T PTZ00258         17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFP-FCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGL   95 (390)
T ss_pred             cCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCC-CCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCc
Confidence            345677999999999999  35555333322 1222 1111222223333222               345899999996


Q ss_pred             hhh----cchhHh---hhcCCcEEEEEEeCC
Q psy2518          85 EEF----DAITKA---YYRGAQACVITFSTI  108 (208)
Q Consensus        85 ~~~----~~~~~~---~~~~~d~ii~v~d~~  108 (208)
                      ..-    ..+...   .++.+|++++|+|..
T Consensus        96 v~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         96 VKGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            421    122223   467899999999973

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=2.5e-05  Score=62.63  Aligned_cols=110  Identities=17%  Similarity=0.233  Sum_probs=73.3

Q ss_pred             EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCC
Q psy2518          75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVA  148 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~  148 (208)
                      .+.+.|.||+|-.....-.-..--|++++|...+.+    ++-+++    ..+. ...-..++++.||.||-.+.  .-.
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl----~Ale-Iigik~iiIvQNKIDlV~~E~AlE~  161 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHL----MALE-IIGIKNIIIVQNKIDLVSRERALEN  161 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHH----HHHh-hhccceEEEEecccceecHHHHHHH
Confidence            578999999998655333333446899999998864    333332    2221 12235689999999994311  112


Q ss_pred             HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         149 PEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       149 ~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      .+++++|.+-.   +.+++.+||..+.||+.+++.+.+.+....
T Consensus       162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~  205 (415)
T COG5257         162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE  205 (415)
T ss_pred             HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence            33444444432   469999999999999999999988876543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.01  E-value=9.3e-06  Score=63.55  Aligned_cols=111  Identities=20%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             EEEEEeCCChhhhcchhHhhh--------cCCcEEEEEEeCCChhhHH-HHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC
Q psy2518          75 RLMLWDTAGQEEFDAITKAYY--------RGAQACVITFSTIDRDSFE-AAHSWKMKVENECG-EIPTVLVQNKIDLLDQ  144 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~  144 (208)
                      .+.|.|||||.++...+....        ...-+++++.|.....+.. .+..++..+.-... +.|.|.|.||+|+.++
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999977655444333        4566888999976433311 12333333222222 7999999999999652


Q ss_pred             CC-------------------CCHHHHHHHHHH---hC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         145 SV-------------------VAPEEADLLSRA---LG-C-RLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       145 ~~-------------------v~~~~~~~~~~~---~~-~-~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ..                   ......++++.-   ++ . .++.+|+++++++++++..+-+.+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            10                   001111122222   12 3 799999999999999999776543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>KOG0086|consensus

Probab=98.00  E-value=1.2e-06  Score=62.61  Aligned_cols=54  Identities=43%  Similarity=0.880  Sum_probs=46.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      |..+.+++|++|||||||+|+++-+-++.|..|....+.....++|++-..|-.
T Consensus        52 nVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~  105 (214)
T KOG0086|consen   52 NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLT  105 (214)
T ss_pred             eecCcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHH
Confidence            567899999999999999999999999999999988777777788877665544

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=97.97  E-value=3.7e-05  Score=67.52  Aligned_cols=122  Identities=11%  Similarity=0.090  Sum_probs=73.8

Q ss_pred             ccCccccceeeeEEEecCceEEE--EEEeeecCc-ccccc--ccccccceeeEEEEECCeEEEEEEEeCCChhhhc----
Q psy2518          18 TAGQEEFDAITKAYYRGAQACVI--TFSTIDRDS-FEAAH--SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD----   88 (208)
Q Consensus        18 ~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----   88 (208)
                      .+|++..+..+.|+++|++|+||  +++.++... |....  ..|..  ........++  ..+.++||||.....    
T Consensus       109 a~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG--~~L~VIDTPGL~dt~~dq~  184 (763)
T TIGR00993       109 AEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQG--VKIRVIDTPGLKSSASDQS  184 (763)
T ss_pred             hhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECC--ceEEEEECCCCCccccchH
Confidence            45677777888999999999999  455555543 33221  12221  1122223344  458999999965321    


Q ss_pred             ---c---hhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCC
Q psy2518          89 ---A---ITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLD  143 (208)
Q Consensus        89 ---~---~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~  143 (208)
                         .   ....+++  .+|++|+|.+++.......-..++..+.+..+   -...|||.|+.|...
T Consensus       185 ~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       185 KNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence               1   1222333  58999999988643332222355666666555   356888899998753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.96  E-value=6.7e-05  Score=63.02  Aligned_cols=113  Identities=17%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTVLVQNKI  139 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~piivvgnK~  139 (208)
                      ....+.++|++|+..-+.-|..++.+++++|||.++++-+          .+.+....+..+.+...  +.|++|+.||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            4456899999999888888999999999999999986432          23334445555544433  89999999999


Q ss_pred             CCCC------C------------CCCCHHHHHHHHHHh------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         140 DLLD------Q------------SVVAPEEADLLSRAL------------GCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       140 Dl~~------~------------~~v~~~~~~~~~~~~------------~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |+-.      .            +.-..+.+..+.+..            .+.+..++|.+..++..+|+.+.+.
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~  388 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI  388 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence            9621      0            012345555554432            1245689999999999999987664

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.96  E-value=6.9e-05  Score=59.91  Aligned_cols=97  Identities=23%  Similarity=0.269  Sum_probs=70.4

Q ss_pred             cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      ..+.+.-..+.|-.++++++.+|+ +..-+.+++......  ++..+++.||.||.+......++........|++.+.+
T Consensus        70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            344555566688888888888775 566667766555443  67788889999996643332245556677789999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ||+++.+++++...+...+.
T Consensus       148 s~~~~~~~~~l~~~l~~~~s  167 (301)
T COG1162         148 SAKNGDGLEELAELLAGKIT  167 (301)
T ss_pred             cCcCcccHHHHHHHhcCCeE
Confidence            99999999999988776543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=0.00015  Score=60.48  Aligned_cols=99  Identities=18%  Similarity=0.203  Sum_probs=71.5

Q ss_pred             cccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEe
Q psy2518          58 MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQN  137 (208)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgn  137 (208)
                      -|+.+.+..++++...+.+++.||||++.|..-.-..+-.+|.++.|.|....-.-+.+ ++++-+...  +.||+-..|
T Consensus        65 RGISVtsSVMqF~Y~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcrlR--~iPI~TFiN  141 (528)
T COG4108          65 RGISVTSSVMQFDYADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCRLR--DIPIFTFIN  141 (528)
T ss_pred             cCceEEeeEEEeccCCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHhhc--CCceEEEee
Confidence            46677788888888899999999999999887666677789999999999865433332 333333222  799999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHhCC
Q psy2518         138 KIDLLDQSVVAPEEADLLSRALGC  161 (208)
Q Consensus       138 K~Dl~~~~~v~~~~~~~~~~~~~~  161 (208)
                      |.|....  -+-+...+....+++
T Consensus       142 KlDR~~r--dP~ELLdEiE~~L~i  163 (528)
T COG4108         142 KLDREGR--DPLELLDEIEEELGI  163 (528)
T ss_pred             ccccccC--ChHHHHHHHHHHhCc
Confidence            9997442  344555555555543

>KOG0468|consensus

Probab=97.86  E-value=4.8e-05  Score=66.23  Aligned_cols=69  Identities=25%  Similarity=0.372  Sum_probs=56.3

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      .++.+.+++.||+|+-.|.......++-+|++++|+|+.+.-.++.-.-....+++   +.|+++|.||.|.
T Consensus       193 ~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~~~i~vviNKiDR  261 (971)
T KOG0468|consen  193 KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN---RLPIVVVINKVDR  261 (971)
T ss_pred             cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc---cCcEEEEEehhHH
Confidence            57788999999999999998888899999999999999988777643322222222   7999999999995

>KOG0088|consensus

Probab=97.81  E-value=1.1e-05  Score=57.93  Aligned_cols=56  Identities=38%  Similarity=0.775  Sum_probs=50.1

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK   59 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~   59 (208)
                      +|.++.+..|.+|||||||+|-.+-.|++.|..|+...+...-.++|.....|-..
T Consensus        55 ~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~E  110 (218)
T KOG0088|consen   55 VNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLE  110 (218)
T ss_pred             cccccceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999988777778889887777654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=97.80  E-value=8.6e-05  Score=59.53  Aligned_cols=112  Identities=16%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             eeeEEEecCceEEE-EE-EeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChh---------
Q psy2518          27 ITKAYYRGAQACVI-TF-STIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE---------   85 (208)
Q Consensus        27 ~~ki~~vG~s~~gk-~~-~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------   85 (208)
                      .++|+++|.+|+|| +| +.++.......          ...+..+......+.-++.++.+.++||+|--         
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            68999999999999 32 33323222221          11233333334445557889999999999821         


Q ss_pred             ---------hhcchhHh---------hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          86 ---------EFDAITKA---------YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        86 ---------~~~~~~~~---------~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                               .|......         .=...|++|++.+.+.. .+..++  +..+++.....++|-|..|+|.
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~D--i~~mk~Ls~~vNvIPvIaKaD~  154 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLD--IEFMKRLSKRVNVIPVIAKADT  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHH--HHHHHHHTTTSEEEEEESTGGG
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHH--HHHHHHhcccccEEeEEecccc
Confidence                     11111110         11247999999998752 122221  2334444456788999999997

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.78  E-value=0.00025  Score=58.04  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=64.7

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APE  150 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~  150 (208)
                      .+.+.|.||+|...-..   ....-||.++++.+....+....+.   ..+.    ...-++|.||+|+......  ...
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIM----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhh----hhhheEEeehhcccchhHHHHHHH
Confidence            35678999998653221   1456799999997655454444332   1122    2334899999998543211  111


Q ss_pred             HHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         151 EADLLSRA-------LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       151 ~~~~~~~~-------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +.......       +..+++.+||+++.|++++++.+.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            12211111       1147999999999999999999988754

>KOG0092|consensus

Probab=97.76  E-value=2.6e-05  Score=57.91  Aligned_cols=54  Identities=35%  Similarity=0.840  Sum_probs=46.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      -+.+.++++.+|||||||+|.++-++++.|..++...+.....++|..-..|-.
T Consensus        48 ~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~Wvk  101 (200)
T KOG0092|consen   48 TVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVK  101 (200)
T ss_pred             EeCCcEEEEEEEEcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999887777788876555544

>KOG0458|consensus

Probab=97.75  E-value=7.8e-05  Score=63.94  Aligned_cols=117  Identities=19%  Similarity=0.187  Sum_probs=76.8

Q ss_pred             ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHH-------HHHHHHHHHhhcCCCC
Q psy2518          59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-------AHSWKMKVENECGEIP  131 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~p  131 (208)
                      |+.+..++..++.....+.|.|+||+..|-.-.-.-...||++++|.|++- ..|+.       +++ ...+.+..+-.-
T Consensus       240 GvTm~v~~~~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrE-ha~llr~Lgi~q  317 (603)
T KOG0458|consen  240 GVTMDVKTTWFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTRE-HALLLRSLGISQ  317 (603)
T ss_pred             ceeEEeeeEEEecCceeEEEecCCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHH-HHHHHHHcCcce
Confidence            445556666777777889999999988776655555678999999999984 33332       111 122334444456


Q ss_pred             EEEEEeCCCCCCCCCCCHHHHH----HHH-HHhC-----CeEEEEecCCCCCHHHH
Q psy2518         132 TVLVQNKIDLLDQSVVAPEEAD----LLS-RALG-----CRLMRTSVKEDINVNSI  177 (208)
Q Consensus       132 iivvgnK~Dl~~~~~v~~~~~~----~~~-~~~~-----~~~~e~Sa~~~~~i~~~  177 (208)
                      ++|+.||.|+.+..+---+++.    .+. +..|     +.|+.||+.+|+|+-..
T Consensus       318 livaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  318 LIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             EEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            7888999999654332223222    233 3333     47999999999987644

>KOG0461|consensus

Probab=97.73  E-value=0.00041  Score=56.37  Aligned_cols=162  Identities=14%  Similarity=0.127  Sum_probs=88.6

Q ss_pred             ceeeeEEEecCceEEEE-EE-----eeecCccccccccc---cccceeeEEEEE-------CCeEEEEEEEeCCChhhhc
Q psy2518          25 DAITKAYYRGAQACVIT-FS-----TIDRDSFEAAHSWK---MKVSIKRTIKEC-------EGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~-~~-----~~~~~~f~~~~~~t---~~~~~~~~~~~~-------~~~~~~l~i~Dt~g~~~~~   88 (208)
                      +..+++-++|.-.+||+ +-     .-....|+....++   +..|.....+.+       .++..++.+.|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            56688899999999992 11     11133444332222   112222222222       4677889999999976532


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCEEEEEeCCCCCC--CCCCCH-HHHHHHHHHh-----
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD--QSVVAP-EEADLLSRAL-----  159 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~piivvgnK~Dl~~--~~~v~~-~~~~~~~~~~-----  159 (208)
                      +..-.-..-.|..++|.|+...-.-+.... .+-++.    -...++|.||.|+..  +|.... +.+....+.+     
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            222222334578899999875432222211 112222    245677778877632  233222 2233333332     


Q ss_pred             --CCeEEEEecCCC----CCHHHHHHHHHHHHHHHhh
Q psy2518         160 --GCRLMRTSVKED----INVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       160 --~~~~~e~Sa~~~----~~i~~~f~~i~~~~~~~~~  190 (208)
                        +.+++++||+.|    +++.++.+.+-+.+....+
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R  197 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR  197 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence              258999999999    6677777766666655443

>KOG0091|consensus

Probab=97.71  E-value=7e-06  Score=59.36  Aligned_cols=54  Identities=41%  Similarity=0.834  Sum_probs=45.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK   59 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~   59 (208)
                      ..|.+++|++|||||||+|++.-|-++....|+...+......+|.....|-..
T Consensus        53 ~pg~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~e  106 (213)
T KOG0091|consen   53 RPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKE  106 (213)
T ss_pred             CCCcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHH
Confidence            468999999999999999999999999988888776666667888776666543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.69  E-value=0.00015  Score=58.80  Aligned_cols=103  Identities=16%  Similarity=0.110  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--H
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--E  150 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~  150 (208)
                      .+.+.|.||+|.-..   .......+|.++++-...   +-+++......+.    ..|.+++.||+|+........  .
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~----~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPG---TGDDLQGIKAGLM----EIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCC---ccHHHHHHHHHHh----hhccEEEEEcccccchhHHHHHHH
Confidence            467889999985321   123456788888885433   3333433333332    577899999999854221100  0


Q ss_pred             H----HHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         151 E----ADLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       151 ~----~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      .    ...+...   +..+++.+||+++.|++++++.+.+..
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            0    0111111   123689999999999999999998863

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>smart00053 DYNc Dynamin, GTPase

Probab=97.68  E-value=0.00015  Score=56.72  Aligned_cols=68  Identities=19%  Similarity=0.183  Sum_probs=42.6

Q ss_pred             EEEEEEeCCChhh-------------hcchhHhhhc-CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518          74 VRLMLWDTAGQEE-------------FDAITKAYYR-GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI  139 (208)
Q Consensus        74 ~~l~i~Dt~g~~~-------------~~~~~~~~~~-~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~  139 (208)
                      ..+.+.||||...             ...+...|++ ..+++++|.|....-.-.........+...  ..|.++|.||.
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECC
Confidence            4678899999632             2234556777 456999999876532222222222222222  68999999999


Q ss_pred             CCCC
Q psy2518         140 DLLD  143 (208)
Q Consensus       140 Dl~~  143 (208)
                      |..+
T Consensus       203 D~~~  206 (240)
T smart00053      203 DLMD  206 (240)
T ss_pred             CCCC
Confidence            9854

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3887|consensus

Probab=97.64  E-value=0.00028  Score=54.56  Aligned_cols=117  Identities=19%  Similarity=0.256  Sum_probs=70.8

Q ss_pred             CeEEEEEEEeCCChhhhcch---hHhhhcCCcEEEEEEeCCChhhHHHHHHH---HHHHHhhcCCCCEEEEEeCCCCCC-
Q psy2518          71 GEEVRLMLWDTAGQEEFDAI---TKAYYRGAQACVITFSTIDRDSFEAAHSW---KMKVENECGEIPTVLVQNKIDLLD-  143 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~---~~~~~~~~d~ii~v~d~~~~~s~~~~~~~---~~~~~~~~~~~piivvgnK~Dl~~-  143 (208)
                      +.-+.+++||.|||..+-..   ....++++-+.++|.|.-+. -.+.+...   ....-+..+++.+=+...|.|-.. 
T Consensus        72 ~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsd  150 (347)
T KOG3887|consen   72 NSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSD  150 (347)
T ss_pred             hhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCch
Confidence            35578999999999554321   23457899999999997653 23333333   333333344777778889999532 


Q ss_pred             C------CCCCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         144 Q------SVVAPEEADLLSR----ALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       144 ~------~~v~~~~~~~~~~----~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      +      |.+-....+.++.    ..++.|+-+|-.+ ..|.|.|..+++++..+.
T Consensus       151 d~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLipqL  205 (347)
T KOG3887|consen  151 DFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIPQL  205 (347)
T ss_pred             hhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhhhc
Confidence            1      1111111112221    1234566677664 679999999999887554

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=97.63  E-value=8.5e-05  Score=61.47  Aligned_cols=160  Identities=13%  Similarity=0.054  Sum_probs=75.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCcccccccccccc-c--eeeEEEEECCeEEEEEEEeCCChhhhcchhH-----hh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKV-S--IKRTIKECEGEEVRLMLWDTAGQEEFDAITK-----AY   94 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~-~--~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-----~~   94 (208)
                      ...+.|.+.|.+|+||  +++.+.+-.-.++....+|+ +  .....+.... .-.+.+||.||.....-...     .-
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~  111 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK  111 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence            4578999999999999  34444332222222222222 1  2223333221 12489999999532211122     23


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCEEEEEeCCCC-------CCCCCCCHHHHHHH----HHH----
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWK-MKVENECGEIPTVLVQNKIDL-------LDQSVVAPEEADLL----SRA----  158 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~piivvgnK~Dl-------~~~~~v~~~~~~~~----~~~----  158 (208)
                      +..-|.+|++.+.    .|....-|+ ..+.+.  ..|+++|-+|+|.       ...+..++++..+.    +.+    
T Consensus       112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GGG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             ccccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            5678988887753    244333333 333333  6899999999995       12234444443332    222    


Q ss_pred             hCC---eEEEEecCCCC--CHHHHHHHHHHHHHHHhhh
Q psy2518         159 LGC---RLMRTSVKEDI--NVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       159 ~~~---~~~e~Sa~~~~--~i~~~f~~i~~~~~~~~~~  191 (208)
                      .|+   ++|-+|+.+-.  +...+.+.+.+.+...+..
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~  223 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH  223 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence            243   68999998754  5667777777776655443

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG0080|consensus

Probab=97.61  E-value=2e-05  Score=56.86  Aligned_cols=60  Identities=35%  Similarity=0.771  Sum_probs=49.1

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccccccee
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIK   63 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~~~~~   63 (208)
                      |-..|.+.+|-+|||||||+|+.+-.-++.|..|+...+.....+.|..-..|--.+|.|
T Consensus        53 m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Y  112 (209)
T KOG0080|consen   53 MQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLY  112 (209)
T ss_pred             EEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhh
Confidence            456889999999999999999999999999999999877776677777655555444444

>KOG0079|consensus

Probab=97.60  E-value=2e-05  Score=56.08  Aligned_cols=54  Identities=37%  Similarity=0.826  Sum_probs=47.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      -++|.+|.|.+||+||||+|+.+..-++.|..++...+......+|.....|-.
T Consensus        51 ~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLe  104 (198)
T KOG0079|consen   51 DINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLE  104 (198)
T ss_pred             ecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHH
Confidence            467999999999999999999999999999999998888888888887655544

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=97.59  E-value=0.001  Score=55.13  Aligned_cols=79  Identities=14%  Similarity=0.099  Sum_probs=47.4

Q ss_pred             eeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCe---------------EEEEEEEeCCChhhh-
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF-   87 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~-   87 (208)
                      ++|.++|..++||  +|+.+...... .+|+ .|+  +-..-.+.+.+.               +.++++.|+||...- 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi--~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTI--EPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccc--cceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            6899999999999  35555544422 2222 222  222223333322               135899999995421 


Q ss_pred             ---cchhHh---hhcCCcEEEEEEeCC
Q psy2518          88 ---DAITKA---YYRGAQACVITFSTI  108 (208)
Q Consensus        88 ---~~~~~~---~~~~~d~ii~v~d~~  108 (208)
                         ..+...   .++.+|++++|+|..
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence               122233   367899999999984

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=97.56  E-value=0.00022  Score=58.20  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=69.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccc----------cccccccceeeEEEEECCeEEEEEEEeCCChhhh-----
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA----------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF-----   87 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-----   87 (208)
                      .-.+.|+++|.+|+||  +++.++.......          ..+|+.+......+.-+|..+.+.+.||+|--.+     
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            3468899999999999  3454444422221          4566666666666666888999999999992110     


Q ss_pred             ---------cchhHhh------------h--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          88 ---------DAITKAY------------Y--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        88 ---------~~~~~~~------------~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                               ......|            +  .+.|+||+...++. .....++  +..+++....+-+|=|.-|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLD--IEAMKRLSKRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHH--HHHHHHHhcccCeeeeeecccc
Confidence                     0001111            1  24799999988764 2333331  2333444444556667789997

>KOG0394|consensus

Probab=97.55  E-value=5.9e-05  Score=55.70  Aligned_cols=49  Identities=41%  Similarity=0.815  Sum_probs=41.2

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      +..+++++.|++|||||||+|+++.-..+.|...|...+..-..++|..
T Consensus        51 v~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~   99 (210)
T KOG0394|consen   51 VQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFEN   99 (210)
T ss_pred             EEEcCeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhhhcc
Confidence            4567999999999999999999999999999999987666555566654

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.52  E-value=0.00026  Score=63.25  Aligned_cols=115  Identities=15%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             cceeeeEEEecCceEEEE-E-E--eeecCccc------------c--ccccccccceeeEEEEECCe-EEEEEEEeCCCh
Q psy2518          24 FDAITKAYYRGAQACVIT-F-S--TIDRDSFE------------A--AHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQ   84 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk~-~-~--~~~~~~f~------------~--~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~   84 (208)
                      .....+|-++|....||+ + -  -+..+...            +  +....-|+.+........-+ .+.+++.||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            456788888988888882 1 0  00011111            0  01111233333433333323 688999999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      -.|.......++-+|++++|+|....-..+.-.-|......   +.|.+++.||.|.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR  140 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR  140 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence            99999999999999999999999887655554455544433   7999999999996

>KOG0087|consensus

Probab=97.46  E-value=5.5e-05  Score=57.00  Aligned_cols=54  Identities=41%  Similarity=0.820  Sum_probs=45.5

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK   57 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t   57 (208)
                      .+.++..+..++|||||||+|+.....++.|..|+...+.......|.....|-
T Consensus        56 ~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL  109 (222)
T KOG0087|consen   56 VNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWL  109 (222)
T ss_pred             eeecCcEEEEeeecccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHH
Confidence            568899999999999999999999999999999999877665667776544443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.44  E-value=0.00064  Score=40.53  Aligned_cols=45  Identities=24%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          96 RGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .-++++++++|++..-  |.+.-...+.+++...++.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            3478999999998743  55665667788888877899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG1532|consensus

Probab=97.44  E-value=0.0016  Score=51.49  Aligned_cols=113  Identities=19%  Similarity=0.173  Sum_probs=62.5

Q ss_pred             EEEEEEEeCCChhh-hc-----chhHhhhc--CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          73 EVRLMLWDTAGQEE-FD-----AITKAYYR--GAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~-~~-----~~~~~~~~--~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      .....+.|||||-. |.     ++....++  ...+++++.|...   +..|=.---+--.+. +.-..|+|++.||+|+
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-yktklp~ivvfNK~Dv  193 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-YKTKLPFIVVFNKTDV  193 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH-HhccCCeEEEEecccc
Confidence            35578999999843 32     12222233  4456666777533   333321111111111 1117999999999998


Q ss_pred             CCCCCC----C-HHHHHHHHH--------------------H-hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         142 LDQSVV----A-PEEADLLSR--------------------A-LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       142 ~~~~~v----~-~~~~~~~~~--------------------~-~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .+..-.    + -+..++...                    - .++..+-|||.+|.|.+++|..+-+.+-
T Consensus       194 ~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  194 SDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD  264 (366)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence            653100    0 000000000                    0 1457899999999999999998876654

>KOG0093|consensus

Probab=97.43  E-value=7.1e-05  Score=53.29  Aligned_cols=53  Identities=36%  Similarity=0.819  Sum_probs=45.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      ..+.|+.|++|||||||+|+..--.++.|.-|....+......+|+....+..
T Consensus        65 r~~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~t  117 (193)
T KOG0093|consen   65 RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWIT  117 (193)
T ss_pred             ecccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHH
Confidence            35689999999999999999999999999999998777777788887666654

>KOG0098|consensus

Probab=97.36  E-value=5.2e-05  Score=56.10  Aligned_cols=56  Identities=38%  Similarity=0.839  Sum_probs=49.1

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK   59 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~   59 (208)
                      ++.++.-++|++|||||||.|+++.+-++.|..|+...+..-..++|+.-..|-.+
T Consensus        48 ~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D  103 (216)
T KOG0098|consen   48 VTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLED  103 (216)
T ss_pred             EEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHH
Confidence            56789999999999999999999999999999999987777778889876666654

>KOG1547|consensus

Probab=97.36  E-value=0.00081  Score=52.04  Aligned_cols=141  Identities=12%  Similarity=0.147  Sum_probs=76.0

Q ss_pred             eeeEEEecCceEEEE--EEeeecCccc---------cccccccccceeeEEEEECCeEEEEEEEeCCCh-----------
Q psy2518          27 ITKAYYRGAQACVIT--FSTIDRDSFE---------AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----------   84 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~--~~~~~~~~f~---------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----------   84 (208)
                      .|+|++||.||+||+  .+.++.....         ..++.|+.+......+.-+|.+.++.+.||+|-           
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            589999999999992  2211111111         134555555555566666788999999999982           


Q ss_pred             -------hhhcchh--------Hhhhc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCC--CC
Q psy2518          85 -------EEFDAIT--------KAYYR--GAQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLL--DQ  144 (208)
Q Consensus        85 -------~~~~~~~--------~~~~~--~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~--~~  144 (208)
                             +.|....        ...+.  ..|+|++....+- .|+.-+ .+.+..+.+.   .-++-|.-|+|..  ++
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v---vNvvPVIakaDtlTleE  201 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV---VNVVPVIAKADTLTLEE  201 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh---heeeeeEeecccccHHH
Confidence                   1111111        11121  3688888887764 344433 2333333332   3455566788852  12


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518         145 SVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus       145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      |.-=.+.+++-...+++.++.--+.+-
T Consensus       202 r~~FkqrI~~el~~~~i~vYPq~~fde  228 (336)
T KOG1547|consen  202 RSAFKQRIRKELEKHGIDVYPQDSFDE  228 (336)
T ss_pred             HHHHHHHHHHHHHhcCccccccccccc
Confidence            222222333344456666665544443

>cd01900 YchF YchF subfamily

Probab=97.34  E-value=0.0017  Score=51.92  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=45.2

Q ss_pred             EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhhh----c
Q psy2518          30 AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF----D   88 (208)
Q Consensus        30 i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~----~   88 (208)
                      +.++|..++||  +|+.+..........|...++...-.+.+.+.               +..+++.|+||...-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            46899999999  35555444432211122212323333334332               235899999995421    1


Q ss_pred             chhHhh---hcCCcEEEEEEeCC
Q psy2518          89 AITKAY---YRGAQACVITFSTI  108 (208)
Q Consensus        89 ~~~~~~---~~~~d~ii~v~d~~  108 (208)
                      .+...+   ++.+|+++.|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            233333   57899999999863

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG0095|consensus

Probab=97.29  E-value=9.3e-05  Score=52.79  Aligned_cols=55  Identities=38%  Similarity=0.782  Sum_probs=46.9

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccccccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK   59 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~~   59 (208)
                      -.+|.-++|++|||||||+|++.-.-++.-..++...+...++-+|.--..|--.
T Consensus        50 ev~gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlre  104 (213)
T KOG0095|consen   50 EVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLRE  104 (213)
T ss_pred             EECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHH
Confidence            4688999999999999999999999999999998888888888888765555443

>KOG0078|consensus

Probab=97.26  E-value=5.6e-05  Score=56.94  Aligned_cols=54  Identities=41%  Similarity=0.840  Sum_probs=46.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      .+.+..+.|++|||||||+|+..++-++.|..|+...+......+|.....|--
T Consensus        55 ~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~  108 (207)
T KOG0078|consen   55 ELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIK  108 (207)
T ss_pred             EeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHH
Confidence            457789999999999999999999999999999998777777888886555543

>KOG2655|consensus

Probab=97.23  E-value=0.00089  Score=55.02  Aligned_cols=142  Identities=11%  Similarity=0.109  Sum_probs=80.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCcccc---------ccccccccceeeEEEEECCeEEEEEEEeCCChh----------
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEA---------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------   85 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------   85 (208)
                      .|.++++|.+|+||  +++.++...+..         ....|+.++.....+.-+|..+.+.+.||||--          
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            48899999999999  334433443332         223355555555555557889999999999821          


Q ss_pred             --------hhc-------chhHhhhc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CC
Q psy2518          86 --------EFD-------AITKAYYR--GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SV  146 (208)
Q Consensus        86 --------~~~-------~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~  146 (208)
                              .|.       .+.+..+.  ..|+||+....+.. .+..++  +..+++.+....+|-|.-|+|....  ..
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~  177 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN  177 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence                    111       11111222  68999999987643 222221  2334444446677778889997331  11


Q ss_pred             CCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518         147 VAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus       147 v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ...+.+.+-....++++|.......
T Consensus       178 ~~K~~I~~~i~~~nI~vf~fp~~~~  202 (366)
T KOG2655|consen  178 QFKKRIRQDIEEHNIKVFDFPTDES  202 (366)
T ss_pred             HHHHHHHHHHHHcCcceecCCCCcc
Confidence            2223344445556676665544443

>KOG0099|consensus

Probab=97.09  E-value=0.0038  Score=49.01  Aligned_cols=117  Identities=20%  Similarity=0.198  Sum_probs=74.0

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEEEEEeCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTVLVQNKI  139 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~piivvgnK~  139 (208)
                      .++.++++|.+||..-+.-|-+++.+..++|+|...+.-.          -+++....+..+.+..-  .+.+|+..||.
T Consensus       200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq  279 (379)
T KOG0099|consen  200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  279 (379)
T ss_pred             cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence            4566999999999888888999999999999998876421          12222222333332221  57899999999


Q ss_pred             CCCCC----------------------------CCCCH----------HHHHHHHHHh-----CCeEEEEecCCCCCHHH
Q psy2518         140 DLLDQ----------------------------SVVAP----------EEADLLSRAL-----GCRLMRTSVKEDINVNS  176 (208)
Q Consensus       140 Dl~~~----------------------------~~v~~----------~~~~~~~~~~-----~~~~~e~Sa~~~~~i~~  176 (208)
                      |+..+                            ..-++          ++........     .|-+..++|.+-+||..
T Consensus       280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr  359 (379)
T KOG0099|consen  280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  359 (379)
T ss_pred             HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence            97321                            00000          1111111111     13456788999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLSE  188 (208)
Q Consensus       177 ~f~~i~~~~~~~  188 (208)
                      +|+.....+...
T Consensus       360 VFnDcrdiIqr~  371 (379)
T KOG0099|consen  360 VFNDCRDIIQRM  371 (379)
T ss_pred             HHHHHHHHHHHH
Confidence            999876666543

>KOG1486|consensus

Probab=97.00  E-value=0.011  Score=46.25  Aligned_cols=151  Identities=17%  Similarity=0.139  Sum_probs=92.3

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHhhh
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~~~   95 (208)
                      ..-+|+++|-.++|| +++..+...-.  ..|.-|. .....-.+.++|..  +++.|-||.-.-.+.       .-...
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTT-LtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavA  137 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTT-LTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVA  137 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeE-EEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEe
Confidence            346789999999999 44432232222  2233222 12344556666666  789999985433221       12346


Q ss_pred             cCCcEEEEEEeCCChhhHHHH-HHHHHHHH--------------------------------------------------
Q psy2518          96 RGAQACVITFSTIDRDSFEAA-HSWKMKVE--------------------------------------------------  124 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~--------------------------------------------------  124 (208)
                      +.||.++.|.|.+..+.-..+ .+-++.+-                                                  
T Consensus       138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev  217 (364)
T KOG1486|consen  138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV  217 (364)
T ss_pred             ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence            789999999999876443322 11122210                                                  


Q ss_pred             ----------------hhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         125 ----------------NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       125 ----------------~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                                      .+..-.+++-|-||.|     +++.++...+|++.+-  +.+|+...-|++.+.+.+.+.+-
T Consensus       218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~  288 (364)
T KOG1486|consen  218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN  288 (364)
T ss_pred             EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence                            0000134555667776     4788889999987663  56788888999999998888753

>KOG0081|consensus

Probab=96.98  E-value=9.1e-05  Score=53.41  Aligned_cols=52  Identities=37%  Similarity=0.759  Sum_probs=43.0

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      .++++-|++|||||||+|+++--.++...-|....|.-..+++|.....|--
T Consensus        63 r~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlS  114 (219)
T KOG0081|consen   63 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLS  114 (219)
T ss_pred             cceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHH
Confidence            5789999999999999999999998888888877776666777777665543

>KOG0097|consensus

Probab=96.92  E-value=0.00024  Score=50.17  Aligned_cols=51  Identities=39%  Similarity=0.929  Sum_probs=38.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW   56 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~   56 (208)
                      ..|+.++|++||+||||+|+.+-+-++.|..|....+.......++.-.+|
T Consensus        55 vsgqkiklqiwdtagqerfravtrsyyrgaagalmvyditrrstynhlssw  105 (215)
T KOG0097|consen   55 VSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW  105 (215)
T ss_pred             ecCcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHH
Confidence            357889999999999999999999999999998775443323444443333

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.87  E-value=0.015  Score=43.25  Aligned_cols=85  Identities=22%  Similarity=0.200  Sum_probs=60.6

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      ..+.+.|.||++...  ......+..+|.++++...+ ..+...+..++..+.+.  +.|+.+|.||+|...   -..++
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~--~~~~~vV~N~~~~~~---~~~~~  162 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF--GIPVGVVINKYDLND---EIAEE  162 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc--CCCEEEEEeCCCCCc---chHHH
Confidence            467789999996532  23345678899999999988 44666677766666543  467889999999633   23456


Q ss_pred             HHHHHHHhCCeEE
Q psy2518         152 ADLLSRALGCRLM  164 (208)
Q Consensus       152 ~~~~~~~~~~~~~  164 (208)
                      .++++++.+++++
T Consensus       163 ~~~~~~~~~~~vl  175 (179)
T cd03110         163 IEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHcCCCeE
Confidence            7778888887665

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG0083|consensus

Probab=96.85  E-value=0.0006  Score=47.81  Aligned_cols=51  Identities=39%  Similarity=0.882  Sum_probs=40.3

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW   56 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~   56 (208)
                      ..+..|+|++|||||||+|+++--.++....+....+..-...+|+.-..|
T Consensus        42 ~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~w   92 (192)
T KOG0083|consen   42 MDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAW   92 (192)
T ss_pred             cCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHH
Confidence            357789999999999999999999998888888776665556666654444

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=96.80  E-value=0.00052  Score=49.19  Aligned_cols=52  Identities=10%  Similarity=-0.116  Sum_probs=34.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      +++++|.+++||  +++++....+.. ...+.|.......+.+++   .+.||||||-
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVS-VSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcee-eCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999  355555555442 333344444455555554   4799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=96.75  E-value=0.00048  Score=50.13  Aligned_cols=54  Identities=15%  Similarity=0.092  Sum_probs=35.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      ...+++++|.+++||  +++++. +.....+.++.|.......+..++   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~-~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALK-GRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh-CCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            357889999999999  344444 344556677777543333333333   589999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0467|consensus

Probab=96.73  E-value=0.004  Score=55.35  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             ccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH---HH-HHHHHHHHhhcCCC
Q psy2518          55 SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AA-HSWKMKVENECGEI  130 (208)
Q Consensus        55 ~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~-~~~~~~~~~~~~~~  130 (208)
                      ..|-|+.+....+..-.+.+.+++.|+||+-.|.+......+-+|++++..|+...-.-+   -+ +.|.+       ..
T Consensus        53 eq~rgitmkss~is~~~~~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~  125 (887)
T KOG0467|consen   53 EQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GL  125 (887)
T ss_pred             hhhhceeeeccccccccCceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cC
Confidence            345566777777777778899999999999999999999999999999999997654333   22 12332       45


Q ss_pred             CEEEEEeCCC
Q psy2518         131 PTVLVQNKID  140 (208)
Q Consensus       131 piivvgnK~D  140 (208)
                      ..++|.||.|
T Consensus       126 ~~~lvinkid  135 (887)
T KOG0467|consen  126 KPILVINKID  135 (887)
T ss_pred             ceEEEEehhh
Confidence            6788999999

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.66  E-value=0.0047  Score=46.38  Aligned_cols=54  Identities=19%  Similarity=0.237  Sum_probs=42.4

Q ss_pred             EEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         132 TVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       132 iivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      =++|.||.||...-..+.+...+-+++.  +.+++++|+++|+|+++++.++....
T Consensus       145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            4788999999776556556666666655  46999999999999999998877653

>KOG0410|consensus

Probab=96.64  E-value=0.00079  Score=54.28  Aligned_cols=142  Identities=16%  Similarity=0.041  Sum_probs=82.4

Q ss_pred             eEEEecCceEEEE--EEe------eecCccccccccccccceeeEEEEE-CCeEEEEEEEeCCChh--hhcch------h
Q psy2518          29 KAYYRGAQACVIT--FST------IDRDSFEAAHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQE--EFDAI------T   91 (208)
Q Consensus        29 ki~~vG~s~~gk~--~~~------~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~--~~~~~------~   91 (208)
                      -|.+||=+++||+  +..      +..++.-.+-+||.      +..+. .|..  +.+.||.|--  -...+      .
T Consensus       180 viavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~------h~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~AT  251 (410)
T KOG0410|consen  180 VIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTL------HSAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQAT  251 (410)
T ss_pred             eEEEEeecCccHHHHHHHHHhhhcCccchhheeccchh------hhccCCCCcE--EEEeechhhhhhCcHHHHHHHHHH
Confidence            4678999999992  222      22233333444443      22233 3444  6788998842  11122      2


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC----EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIP----TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p----iivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      -.....||.++-|.|+++|.--.....-+.-+.+..- ..|    ++=|-||.|..+.. ++.       ..++  -+.+
T Consensus       252 LeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e~-------E~n~--~v~i  321 (410)
T KOG0410|consen  252 LEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VEE-------EKNL--DVGI  321 (410)
T ss_pred             HHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Ccc-------ccCC--cccc
Confidence            2346789999999999998655443333333332211 222    34466888864421 211       1222  5789


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ||++|.|.+++...+-..+...
T Consensus       322 saltgdgl~el~~a~~~kv~~~  343 (410)
T KOG0410|consen  322 SALTGDGLEELLKAEETKVASE  343 (410)
T ss_pred             ccccCccHHHHHHHHHHHhhhh
Confidence            9999999999999887776554

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=96.64  E-value=0.027  Score=46.71  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=63.4

Q ss_pred             EEEEeCCChhhhcc--hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHH
Q psy2518          76 LMLWDTAGQEEFDA--ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEE  151 (208)
Q Consensus        76 l~i~Dt~g~~~~~~--~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~  151 (208)
                      +.+.||.|+|.|-+  ++-..-+..|-.+++.-.++.-+-- .++.+--+...  ..|++++.||+|+..+..+  ..++
T Consensus       203 VsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~a~--~lPviVvvTK~D~~~ddr~~~v~~e  279 (527)
T COG5258         203 VSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIALAM--ELPVIVVVTKIDMVPDDRFQGVVEE  279 (527)
T ss_pred             EEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhhhh--cCCEEEEEEecccCcHHHHHHHHHH
Confidence            67899999998854  3334456789999999988864321 12222111111  7999999999998542100  0111


Q ss_pred             HHH----------------------HHHHh--CC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         152 ADL----------------------LSRAL--GC-RLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       152 ~~~----------------------~~~~~--~~-~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +.+                      .+.+.  +. |+|.+|+.+|.|++-+.+ +...+
T Consensus       280 i~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e-~f~~L  337 (527)
T COG5258         280 ISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDE-FFLLL  337 (527)
T ss_pred             HHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHH-HHHhC
Confidence            111                      11112  23 899999999999764433 33333

>KOG1143|consensus

Probab=96.64  E-value=0.067  Score=44.33  Aligned_cols=100  Identities=15%  Similarity=0.187  Sum_probs=63.6

Q ss_pred             EEEEEeCCChhhhcchhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--------
Q psy2518          75 RLMLWDTAGQEEFDAITKAYY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--------  144 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--------  144 (208)
                      .+.+.|-+|+.+|....-.-+  -..|.+++|++.+..-... ..+.+-.+...  +.|++++.+|.|+.+.        
T Consensus       250 lvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~  326 (591)
T KOG1143|consen  250 LVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVK  326 (591)
T ss_pred             eEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHH
Confidence            478999999998876333222  2478889999887643321 12222222222  7999999999998653        


Q ss_pred             ----------------CCCCHHHHHHHHHHh---CC-eEEEEecCCCCCHHHH
Q psy2518         145 ----------------SVVAPEEADLLSRAL---GC-RLMRTSVKEDINVNSI  177 (208)
Q Consensus       145 ----------------~~v~~~~~~~~~~~~---~~-~~~e~Sa~~~~~i~~~  177 (208)
                                      +.-+++++...+.+.   ++ ++|.+|+.+|+|++-+
T Consensus       327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll  379 (591)
T KOG1143|consen  327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL  379 (591)
T ss_pred             HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence                            222334444444443   23 8999999999987643

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.62  E-value=0.007  Score=44.31  Aligned_cols=63  Identities=22%  Similarity=0.264  Sum_probs=44.8

Q ss_pred             EEEEEeCCChhh----hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518          75 RLMLWDTAGQEE----FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI  139 (208)
Q Consensus        75 ~l~i~Dt~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~  139 (208)
                      .+.|.||||...    ...+...++..+|++++|.+.++..+-.....|.......  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            478999999732    2356778889999999999999866655555555444443  34588888884

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG0466|consensus

Probab=96.62  E-value=0.0019  Score=51.72  Aligned_cols=111  Identities=17%  Similarity=0.249  Sum_probs=69.6

Q ss_pred             EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--C
Q psy2518          75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--A  148 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~  148 (208)
                      .+.+.|++|++-.......-..--|++++....+.    |++-+++..  .++.+   -..++++.||.||..+.+-  .
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~---LkhiiilQNKiDli~e~~A~eq  200 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMK---LKHIIILQNKIDLIKESQALEQ  200 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhh---hceEEEEechhhhhhHHHHHHH
Confidence            46789999998765532222223455666655442    444444422  22222   2568999999999543221  1


Q ss_pred             HHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         149 PEEADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       149 ~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      .+++..|.+..   +.+++.+||.-..||+-+.+.+++.+....+
T Consensus       201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence            23334444432   4699999999999999999999998765433

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.59  E-value=0.0053  Score=49.29  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ..+-++|.||+|+........+...+..+..  +.+++++||++|.|++++.+++.++
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4677899999999542222233344444443  4689999999999999999998764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=96.55  E-value=0.014  Score=46.79  Aligned_cols=110  Identities=15%  Similarity=0.181  Sum_probs=65.8

Q ss_pred             ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518          59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK  138 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK  138 (208)
                      |+.+....+.++-.+-.+-..|+||+-.|-+..-.-....|+.|+|++.++..--+.....+  +.+..+-+.++++.||
T Consensus        60 GITIntahveyet~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqvGvp~ivvflnK  137 (394)
T COG0050          60 GITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQVGVPYIVVFLNK  137 (394)
T ss_pred             CceeccceeEEecCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhcCCcEEEEEEec
Confidence            33444455555555556788999999888664444456789999999999853322211111  1222223356677899


Q ss_pred             CCCCCCCCC---CHHHHHHHHHHhCC-----eEEEEecCC
Q psy2518         139 IDLLDQSVV---APEEADLLSRALGC-----RLMRTSVKE  170 (208)
Q Consensus       139 ~Dl~~~~~v---~~~~~~~~~~~~~~-----~~~e~Sa~~  170 (208)
                      +|+.+.+..   -+.+.+++..++++     +++.-||..
T Consensus       138 ~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~  177 (394)
T COG0050         138 VDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALK  177 (394)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhh
Confidence            999653322   12345556666664     577777664

>KOG0393|consensus

Probab=96.55  E-value=0.0019  Score=48.80  Aligned_cols=49  Identities=39%  Similarity=0.716  Sum_probs=33.2

Q ss_pred             cccc-CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           3 NRIC-EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         3 ~~~~-~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      +... .|..+.|.+|||||||+|+++....+-...-+...|......+|.
T Consensus        44 ~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~   93 (198)
T KOG0393|consen   44 NVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFE   93 (198)
T ss_pred             EEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCChhhHH
Confidence            3455 489999999999999999996656555555554344433334443

>KOG0465|consensus

Probab=96.50  E-value=0.029  Score=48.98  Aligned_cols=66  Identities=18%  Similarity=0.381  Sum_probs=51.1

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      .+.++|.||||+-.|.-.....++-.|+++++.|....-.-+..--|. ++.++  +.|.+...||.|.
T Consensus       103 ~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~r-Q~~ry--~vP~i~FiNKmDR  168 (721)
T KOG0465|consen  103 DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWR-QMKRY--NVPRICFINKMDR  168 (721)
T ss_pred             cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHH-HHHhc--CCCeEEEEehhhh
Confidence            778999999999999888888899999999999987654333333343 33333  7899999999994

>cd01856 YlqF YlqF

Probab=96.29  E-value=0.0015  Score=48.44  Aligned_cols=55  Identities=15%  Similarity=0.025  Sum_probs=35.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      ..++++++|.+++||  +++++....+. ...++.+.......+.++   ..+.+|||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            457899999999999  35655555553 223333333444444444   34789999984

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=96.26  E-value=0.022  Score=54.54  Aligned_cols=116  Identities=22%  Similarity=0.107  Sum_probs=65.3

Q ss_pred             ccceeeeE-EEecCceEEE-EEEeeecCcccccc----ccc--cccceeeEEEEECCeEEEEEEEeCCChh--------h
Q psy2518          23 EFDAITKA-YYRGAQACVI-TFSTIDRDSFEAAH----SWK--MKVSIKRTIKECEGEEVRLMLWDTAGQE--------E   86 (208)
Q Consensus        23 ~~~~~~ki-~~vG~s~~gk-~~~~~~~~~f~~~~----~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--------~   86 (208)
                      .+.+.+.- +++|+.|+|| +++...+-.|.-..    ..+  ++.... -...+.++   -.++||+|.-        .
T Consensus       106 ~~lY~LPWYlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~---avliDtaG~y~~~~~~~~~  181 (1169)
T TIGR03348       106 RYLYDLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRN-CDWWFTDE---AVLIDTAGRYTTQDSDPEE  181 (1169)
T ss_pred             hhhhcCCCEEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcc-cceEecCC---EEEEcCCCccccCCCcccc
Confidence            34444443 5679999999 44433344443221    111  111111 01112222   3488999831        1


Q ss_pred             hcchhHhh---------hcCCcEEEEEEeCCChhh---------HHHHHHHHHHHHhhcC-CCCEEEEEeCCCCC
Q psy2518          87 FDAITKAY---------YRGAQACVITFSTIDRDS---------FEAAHSWKMKVENECG-EIPTVLVQNKIDLL  142 (208)
Q Consensus        87 ~~~~~~~~---------~~~~d~ii~v~d~~~~~s---------~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~  142 (208)
                      ....|..+         -+..|++|+++|+.+--.         -..+...+.++.+..+ ..|+.|+.||+|+.
T Consensus       182 ~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       182 DAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL  256 (1169)
T ss_pred             cHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence            11223333         246899999999865421         1344566777777767 99999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=96.13  E-value=0.019  Score=42.71  Aligned_cols=43  Identities=26%  Similarity=0.225  Sum_probs=27.1

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      |++++|.|..++.+..+ ..+...+.-...+.|+++|.||+|+.
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~   43 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLV   43 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcC
Confidence            78999999988643321 12222211111268999999999984

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd04133 Rop_like Rop subfamily

Probab=96.09  E-value=0.0046  Score=46.06  Aligned_cols=49  Identities=45%  Similarity=0.799  Sum_probs=41.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA   53 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~   53 (208)
                      ..++..+.+.+|||+|+++|+...+.++.+..++...+......+|..-
T Consensus        43 ~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~   91 (176)
T cd04133          43 SVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENV   91 (176)
T ss_pred             EECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHH
Confidence            4567889999999999999999999999999998887766556677653

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0464|consensus

Probab=95.94  E-value=0.0028  Score=52.79  Aligned_cols=80  Identities=20%  Similarity=0.277  Sum_probs=63.5

Q ss_pred             ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518          59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK  138 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK  138 (208)
                      |+.+.+-.+.++=+..++++.||+|+-.|+-....+++--|+++.|||.+..-.-+.+--|...-+.   +.|-.+..||
T Consensus        87 gitiqsaav~fdwkg~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~fink  163 (753)
T KOG0464|consen   87 GITIQSAAVNFDWKGHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINK  163 (753)
T ss_pred             CceeeeeeeecccccceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhh
Confidence            4455677777777788899999999999998899999999999999999876555555556543222   6888888999


Q ss_pred             CCC
Q psy2518         139 IDL  141 (208)
Q Consensus       139 ~Dl  141 (208)
                      .|.
T Consensus       164 mdk  166 (753)
T KOG0464|consen  164 MDK  166 (753)
T ss_pred             hhh
Confidence            996

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=95.82  E-value=0.005  Score=46.15  Aligned_cols=48  Identities=23%  Similarity=0.524  Sum_probs=38.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ...+..+.|.+|||+|+++|+.+...++.|..++...+......+|..
T Consensus        47 ~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~   94 (182)
T cd04172          47 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS   94 (182)
T ss_pred             EECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence            456788999999999999999999999999888877666544555544

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>COG1161 Predicted GTPases [General function prediction only]

Probab=95.79  E-value=0.032  Score=45.75  Aligned_cols=92  Identities=20%  Similarity=0.196  Sum_probs=62.5

Q ss_pred             CCh-hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC
Q psy2518          82 AGQ-EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG  160 (208)
Q Consensus        82 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~  160 (208)
                      +|+ ..+.......+..+|+++-|.|+-++.+..+     ..+.+...+.|.++|.||+||.... +..+=.+.+.++.+
T Consensus        18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v~~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~   91 (322)
T COG1161          18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIVKEKPKLLVLNKADLAPKE-VTKKWKKYFKKEEG   91 (322)
T ss_pred             CCchHHHHHHHHHhcccCCEEEEEEeccccccccC-----ccHHHHHccCCcEEEEehhhcCCHH-HHHHHHHHHHhcCC
Confidence            554 5666677788999999999999999876543     3344444466779999999995422 22222233333335


Q ss_pred             CeEEEEecCCCCCHHHHHH
Q psy2518         161 CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       161 ~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ...+.++++.+.+...+..
T Consensus        92 ~~~~~v~~~~~~~~~~i~~  110 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRK  110 (322)
T ss_pred             CccEEEEeecccCccchHH
Confidence            5678899998887776664

>KOG4252|consensus

Probab=95.77  E-value=0.00029  Score=51.91  Aligned_cols=46  Identities=80%  Similarity=1.135  Sum_probs=37.0

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA   53 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~   53 (208)
                      +.-+++|+||+|||++|+..-|.++.|..++...|...-..+|+..
T Consensus        66 ~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~  111 (246)
T KOG4252|consen   66 IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEAT  111 (246)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHH
Confidence            3456789999999999999999999999999876655445566543

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.76  E-value=0.18  Score=37.29  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=63.6

Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      ..|.|+|++|++..-|++.+..=+..+.-...--.+.++++-....+.-.+...+..+++.+++++++.+.-....+...
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~  143 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS  143 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence            57999999999999999887665555443333344566666666555577889999999999999999887777655444


Q ss_pred             HHHHHHHH
Q psy2518         177 IFRYLTTK  184 (208)
Q Consensus       177 ~f~~i~~~  184 (208)
                      +=+.+++.
T Consensus       144 lAqRLL~~  151 (176)
T PF11111_consen  144 LAQRLLRM  151 (176)
T ss_pred             HHHHHHHH
Confidence            44444433

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>cd04131 Rnd Rnd subfamily

Probab=95.65  E-value=0.0088  Score=44.58  Aligned_cols=48  Identities=23%  Similarity=0.536  Sum_probs=38.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      .+++..+.|.+|||+|+++|+.....++.|..++...+......+|..
T Consensus        43 ~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~   90 (178)
T cd04131          43 EIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDS   90 (178)
T ss_pred             EECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHH
Confidence            356788999999999999999998888888888877666544555554

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0085|consensus

Probab=95.55  E-value=0.025  Score=43.76  Aligned_cols=124  Identities=13%  Similarity=0.093  Sum_probs=77.8

Q ss_pred             EEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhcC--CCCEE
Q psy2518          66 IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD----------SFEAAHSWKMKVENECG--EIPTV  133 (208)
Q Consensus        66 ~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~----------s~~~~~~~~~~~~~~~~--~~pii  133 (208)
                      ++.++-+++.+.+.|.+|+..-+.-|-.++.+...++++..++.-+          ..++....+..+..+.=  +.++|
T Consensus       191 eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVI  270 (359)
T KOG0085|consen  191 EYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI  270 (359)
T ss_pred             ecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceE
Confidence            3345567788999999999776666777777766666665554322          12222223333332211  78999


Q ss_pred             EEEeCCCCCCC----------------CCCCHHHHHHHHHHh----C-----C-eEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         134 LVQNKIDLLDQ----------------SVVAPEEADLLSRAL----G-----C-RLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       134 vvgnK~Dl~~~----------------~~v~~~~~~~~~~~~----~-----~-~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +..||.|+.++                .+-..+.++++..++    +     + --..++|.+-.||.-+|..+...++.
T Consensus       271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            99999998543                112233444444332    1     1 22578899999999999999888876


Q ss_pred             Hh
Q psy2518         188 EL  189 (208)
Q Consensus       188 ~~  189 (208)
                      ..
T Consensus       351 ~~  352 (359)
T KOG0085|consen  351 LN  352 (359)
T ss_pred             hh
Confidence            43

>cd01875 RhoG RhoG subfamily

Probab=95.53  E-value=0.0065  Score=45.73  Aligned_cols=48  Identities=40%  Similarity=0.691  Sum_probs=39.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA   53 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~   53 (208)
                      +++..+.+.+||++||++|+.+.+.++.+..++...+......+|..-
T Consensus        46 ~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~   93 (191)
T cd01875          46 VDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENV   93 (191)
T ss_pred             ECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHH
Confidence            567789999999999999999999999998888876665555556543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=95.52  E-value=0.11  Score=43.07  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=50.3

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEE----------EC----CeEEEEEEEeCCChh---
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKE----------CE----GEEVRLMLWDTAGQE---   85 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~----------~~----~~~~~l~i~Dt~g~~---   85 (208)
                      .+++-+||..++||  +|+......-. .+|+ .||....-...+.          +.    -.+..+++.|.+|.-   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47889999999999  35554444433 3444 3332221111110          01    134578999998863   


Q ss_pred             -hhcchhHhh---hcCCcEEEEEEeCC
Q psy2518          86 -EFDAITKAY---YRGAQACVITFSTI  108 (208)
Q Consensus        86 -~~~~~~~~~---~~~~d~ii~v~d~~  108 (208)
                       .-+.+...|   ++.+|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence             444566666   57899999999986

>cd04120 Rab12 Rab12 subfamily

Probab=95.40  E-value=0.0054  Score=46.80  Aligned_cols=48  Identities=40%  Similarity=0.877  Sum_probs=39.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      .+++..+.+.+||++|+++|+.....++.|..++...+......+|..
T Consensus        43 ~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~   90 (202)
T cd04120          43 ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD   90 (202)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHH
Confidence            446778999999999999999999999999999887666555556654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG1424|consensus

Probab=95.32  E-value=0.084  Score=45.34  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             hhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEEec
Q psy2518          94 YYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA---LGCRLMRTSV  168 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~e~Sa  168 (208)
                      .+..+|+++.++|+-++--|..  +..+....   .+....+++.||+||     .+.+....|+.-   .+++++.-||
T Consensus       171 VlErSDivvqIVDARnPllfr~~dLe~Yvke~---d~~K~~~LLvNKaDL-----l~~~qr~aWa~YF~~~ni~~vf~SA  242 (562)
T KOG1424|consen  171 VLERSDIVVQIVDARNPLLFRSPDLEDYVKEV---DPSKANVLLVNKADL-----LPPEQRVAWAEYFRQNNIPVVFFSA  242 (562)
T ss_pred             HHhhcceEEEEeecCCccccCChhHHHHHhcc---ccccceEEEEehhhc-----CCHHHHHHHHHHHHhcCceEEEEec
Confidence            5678999999999999866543  33333333   335778999999999     456666777553   4678999999


Q ss_pred             CC
Q psy2518         169 KE  170 (208)
Q Consensus       169 ~~  170 (208)
                      ..
T Consensus       243 ~~  244 (562)
T KOG1424|consen  243 LA  244 (562)
T ss_pred             cc
Confidence            87

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=94.99  E-value=0.011  Score=46.24  Aligned_cols=48  Identities=25%  Similarity=0.532  Sum_probs=39.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ...+..+.|.+|||+|+++|......++.|..++...+......+|..
T Consensus        55 ~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~  102 (232)
T cd04174          55 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDS  102 (232)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHH
Confidence            456888999999999999999988889999998887776655666654

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG2486|consensus

Probab=94.92  E-value=0.014  Score=46.30  Aligned_cols=151  Identities=11%  Similarity=0.019  Sum_probs=77.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~   91 (208)
                      +....+.++|-+++||  +++-+........ ..++-| +  .+.++.-...-.+.+.|.+|          ...+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g-~--Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNG-K--TQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCc-c--ceeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence            5678899999999999  3332222222222 222333 1  12222212222467788888          13334444


Q ss_pred             HhhhcC---CcEEEEEEeCCChh-hHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCCC------CCCCHHH-----HHHH
Q psy2518          92 KAYYRG---AQACVITFSTIDRD-SFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQ------SVVAPEE-----ADLL  155 (208)
Q Consensus        92 ~~~~~~---~d~ii~v~d~~~~~-s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~~------~~v~~~~-----~~~~  155 (208)
                      ..|+..   --.+.+..|.+-+- ..++ ...|+.+     .+.|+.+|.||+|....      ++.....     ..+.
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge-----~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE-----NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh-----cCCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            555433   22334445554331 1111 1233322     17999999999996321      1111111     1111


Q ss_pred             HHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         156 SRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       156 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      +.....+++.+|+.++.|++++.-.+.+
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhh
Confidence            2222347788999999999988776654

>PTZ00099 rab6; Provisional

Probab=94.80  E-value=0.015  Score=43.35  Aligned_cols=49  Identities=39%  Similarity=0.737  Sum_probs=38.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA   53 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~   53 (208)
                      ...++.+.+.+|||+|+++|+.....++.|..++...+......+|...
T Consensus        23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~   71 (176)
T PTZ00099         23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT   71 (176)
T ss_pred             EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH
Confidence            4567889999999999999999999999998888776654444455543

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.73  E-value=0.12  Score=45.14  Aligned_cols=136  Identities=13%  Similarity=0.079  Sum_probs=78.9

Q ss_pred             eeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          26 AITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      --+-+.++|+.|+|| ++.+.+-..|.   ..|+. +..--..-+.|+.-.+.+..++..  ... .-...+-||.+++.
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr~t---k~ti~-~i~GPiTvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlLl  140 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRRFT---KQTID-EIRGPITVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLLL  140 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHHHH---Hhhhh-ccCCceEEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEEE
Confidence            346678999999999 44443334332   22332 222222235788889999999832  222 23456789999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH------HHHH-hCCeEEEEecCCC
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL------LSRA-LGCRLMRTSVKED  171 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~------~~~~-~~~~~~e~Sa~~~  171 (208)
                      .|.+-.-..+. -++++ +....+-+.++.|.+..|+-... .+-..+..      |-.- .|+++|..|...+
T Consensus       141 IdgnfGfEMET-mEFLn-il~~HGmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n  211 (1077)
T COG5192         141 IDGNFGFEMET-MEFLN-ILISHGMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN  211 (1077)
T ss_pred             eccccCceehH-HHHHH-HHhhcCCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence            99875432222 23333 33344456678889999995532 22222221      1111 2678888887654

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=94.63  E-value=0.15  Score=36.23  Aligned_cols=65  Identities=12%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      +.+.++|+++..  .......+..+|.++++.+.+ ..++..+...++.+.+.....++.+|.|+++.
T Consensus        45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~  109 (139)
T cd02038          45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQLRVLNFRVVVNRAES  109 (139)
T ss_pred             CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            678999998743  233456788999999999987 45666555555555444445678899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd04121 Rab40 Rab40 subfamily

Probab=94.56  E-value=0.013  Score=44.18  Aligned_cols=49  Identities=39%  Similarity=0.756  Sum_probs=39.9

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA   53 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~   53 (208)
                      .+++..+.|.+||++|+++|+.+...++.|..++...+......+|..-
T Consensus        49 ~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~   97 (189)
T cd04121          49 LLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGI   97 (189)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHH
Confidence            3467789999999999999999999888899988887765556666654

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=94.54  E-value=0.26  Score=39.74  Aligned_cols=105  Identities=18%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH--
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE--  151 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~--  151 (208)
                      +.+.|.+|.|--...   -....-+|.+++|-=..-.+..+-++.   .+.    ..-=++|.||.|.......-.+.  
T Consensus       144 ~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim----EiaDi~vINKaD~~~A~~a~r~l~~  213 (323)
T COG1703         144 YDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKA---GIM----EIADIIVINKADRKGAEKAARELRS  213 (323)
T ss_pred             CCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHh---hhh----hhhheeeEeccChhhHHHHHHHHHH
Confidence            445666665532111   112345788888876655555554433   222    23457889999963311100111  


Q ss_pred             HHHHHH----HhC--CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         152 ADLLSR----ALG--CRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       152 ~~~~~~----~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +..+..    ..+  -+++.+||.+|.|++++++.+.+.....
T Consensus       214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            111111    112  3789999999999999999988765433

>KOG1954|consensus

Probab=94.49  E-value=0.11  Score=42.96  Aligned_cols=66  Identities=17%  Similarity=0.184  Sum_probs=44.9

Q ss_pred             EEEEEeCCChhh-----------hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          75 RLMLWDTAGQEE-----------FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        75 ~l~i~Dt~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      .+.|.||+|.-.           |.....=|...+|.|+++||....+--++....+..++.+  .-.+-||.||.|..
T Consensus       148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiRVVLNKADqV  224 (532)
T KOG1954|consen  148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIRVVLNKADQV  224 (532)
T ss_pred             heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeEEEecccccc
Confidence            378999999422           2333445678999999999987655444445555555554  45567778999963

>cd01871 Rac1_like Rac1-like subfamily

Probab=94.38  E-value=0.027  Score=41.69  Aligned_cols=48  Identities=40%  Similarity=0.715  Sum_probs=36.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      .+++..+.|.+||++|+++|....+.++.+..++...+......+|..
T Consensus        43 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~   90 (174)
T cd01871          43 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN   90 (174)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHH
Confidence            456788999999999999999888888888777776555433444443

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=94.31  E-value=0.42  Score=37.22  Aligned_cols=76  Identities=25%  Similarity=0.330  Sum_probs=48.5

Q ss_pred             EEEEEeC-CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518          75 RLMLWDT-AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD  153 (208)
Q Consensus        75 ~l~i~Dt-~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~  153 (208)
                      .+-+.|| +|.|.|.   +...+++|.+|.|.|.+ ..|+....+. .++.+...=.++.+|.||.|-.      ++...
T Consensus       135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS-~~sl~taeri-~~L~~elg~k~i~~V~NKv~e~------e~~~~  203 (255)
T COG3640         135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPS-YKSLRTAERI-KELAEELGIKRIFVVLNKVDEE------EELLR  203 (255)
T ss_pred             cEEEEecccchhhhc---cccccCCCEEEEEeCCc-HHHHHHHHHH-HHHHHHhCCceEEEEEeeccch------hHHHH
Confidence            4567887 6777664   45668999999999988 4466554442 2232222237899999999942      33444


Q ss_pred             HHHHHhCC
Q psy2518         154 LLSRALGC  161 (208)
Q Consensus       154 ~~~~~~~~  161 (208)
                      ..+...+.
T Consensus       204 ~~~~~~~~  211 (255)
T COG3640         204 ELAEELGL  211 (255)
T ss_pred             hhhhccCC
Confidence            45555554

>KOG3859|consensus

Probab=94.30  E-value=0.095  Score=41.78  Aligned_cols=57  Identities=16%  Similarity=0.138  Sum_probs=36.5

Q ss_pred             eeeEEEecCceEEEE--EEeeecCcccc----ccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          27 ITKAYYRGAQACVIT--FSTIDRDSFEA----AHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~--~~~~~~~~f~~----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      .|+|+.+|.+|.||+  +..+++-.|..    ...|++........+.-.+..+++.|.||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            589999999999992  23333344443    3345554333333333357788999999988

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.26  E-value=0.043  Score=43.29  Aligned_cols=83  Identities=17%  Similarity=0.176  Sum_probs=49.4

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------CCeEEEEe
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-------GCRLMRTS  167 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-------~~~~~e~S  167 (208)
                      ..-+|.+++|....-.+..+-++.=   +.    ..+=++|.||+|+...+. ...+.+......       .-+++.||
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~KaG---im----EiaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~ts  211 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKAG---IM----EIADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTS  211 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-TT---HH----HH-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred             HHhcCeEEEEecCCCccHHHHHhhh---hh----hhccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEE
Confidence            4568999999988776665544321   22    234578899999633111 111222222111       13899999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~  185 (208)
                      |.++.|++++++.+.+.-
T Consensus       212 A~~~~Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  212 ALEGEGIDELWEAIDEHR  229 (266)
T ss_dssp             TTTTBSHHHHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHHH
Confidence            999999999999887753

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0469|consensus

Probab=94.23  E-value=0.067  Score=45.98  Aligned_cols=69  Identities=20%  Similarity=0.347  Sum_probs=51.6

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      ++..+.+++.|.||+-.|.+.....++-.|++++|+|.-+.-..+.---..+.+.+   .+..+++.||.|.
T Consensus        94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkPvlv~NK~DR  162 (842)
T KOG0469|consen   94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKPVLVMNKMDR  162 (842)
T ss_pred             CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccceEEeehhhH
Confidence            45678899999999999999999999999999999999876544321111122222   4666788999994

>cd01874 Cdc42 Cdc42 subfamily

Probab=94.11  E-value=0.037  Score=40.98  Aligned_cols=47  Identities=36%  Similarity=0.596  Sum_probs=36.2

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      +.+..+.|.+||++|+++|....+.++.+..++...+......+|..
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~   90 (175)
T cd01874          44 IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN   90 (175)
T ss_pred             ECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHH
Confidence            45677899999999999999888888888888776665444445543

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=93.85  E-value=0.027  Score=43.67  Aligned_cols=48  Identities=21%  Similarity=0.504  Sum_probs=38.9

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      .++++.+.|.+||++|++.|+.....++.+..++...|......+|..
T Consensus        43 ~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~   90 (222)
T cd04173          43 EIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDS   90 (222)
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHH
Confidence            467889999999999999999998888888888877666555555554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=93.71  E-value=0.019  Score=43.82  Aligned_cols=49  Identities=18%  Similarity=0.481  Sum_probs=40.1

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW   56 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~   56 (208)
                      +..+.|.+||++|+++|......++.|..++...+......+|..-..|
T Consensus        51 ~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W   99 (202)
T cd04102          51 EKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRW   99 (202)
T ss_pred             CcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHH
Confidence            5678999999999999999999999999998887766556666654444

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=93.59  E-value=0.029  Score=42.75  Aligned_cols=47  Identities=32%  Similarity=0.663  Sum_probs=36.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..+++.+.|++||++|+++|+.+...++.|..++...+......+|.
T Consensus        38 ~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~   84 (200)
T smart00176       38 HTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYK   84 (200)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHH
Confidence            34677899999999999999999888899988887665544444454

Ran is involved in the active transport of proteins through nuclear pores.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=93.39  E-value=1.1  Score=35.60  Aligned_cols=80  Identities=21%  Similarity=0.233  Sum_probs=57.4

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD  153 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~  153 (208)
                      ..+.|.|++.--.  ...-..+.++|.+++|--.| +..+.+++..++...+.  +.|..+|.||.++..    +  +.+
T Consensus       164 ~~~~IIDsaaG~g--CpVi~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f--~ip~~iViNr~~~g~----s--~ie  232 (284)
T COG1149         164 ADLLIIDSAAGTG--CPVIASLKGADLAILVTEPT-PFGLHDLKRALELVEHF--GIPTGIVINRYNLGD----S--EIE  232 (284)
T ss_pred             cceeEEecCCCCC--ChHHHhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh--CCceEEEEecCCCCc----h--HHH
Confidence            5678888853111  12334578999999998887 66777777766666555  799999999997522    2  778


Q ss_pred             HHHHHhCCeEE
Q psy2518         154 LLSRALGCRLM  164 (208)
Q Consensus       154 ~~~~~~~~~~~  164 (208)
                      +++++.+++++
T Consensus       233 ~~~~e~gi~il  243 (284)
T COG1149         233 EYCEEEGIPIL  243 (284)
T ss_pred             HHHHHcCCCee
Confidence            89999887654

>KOG2484|consensus

Probab=93.30  E-value=0.3  Score=40.78  Aligned_cols=75  Identities=20%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             EEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518          77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL  154 (208)
Q Consensus        77 ~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~  154 (208)
                      ..|+-.....|....+..+..+|+||-|.|.-||.+-..  +..|   +.+..++...|+|.||.||     |+.+..+.
T Consensus       126 ~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~---V~~~~gnKkLILVLNK~DL-----VPrEv~e~  197 (435)
T KOG2484|consen  126 ALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEA---VLQAHGNKKLILVLNKIDL-----VPREVVEK  197 (435)
T ss_pred             hccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHH---HHhccCCceEEEEeehhcc-----CCHHHHHH
Confidence            344444445566666667888999999999999986543  3333   3333446889999999999     66777777


Q ss_pred             HHHHh
Q psy2518         155 LSRAL  159 (208)
Q Consensus       155 ~~~~~  159 (208)
                      |..-+
T Consensus       198 Wl~YL  202 (435)
T KOG2484|consen  198 WLVYL  202 (435)
T ss_pred             HHHHH
Confidence            76543

>KOG0460|consensus

Probab=93.23  E-value=0.53  Score=38.72  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             ccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeC
Q psy2518          59 KVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNK  138 (208)
Q Consensus        59 ~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK  138 (208)
                      |+.+..-.+.+.-..-.+-=.||||+-.|-...-.-...-|++|+|+..+|..=-+. ++.+- +.+.-+-..+++..||
T Consensus       102 GITIn~aHveYeTa~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQT-rEHlL-LArQVGV~~ivvfiNK  179 (449)
T KOG0460|consen  102 GITINAAHVEYETAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQT-REHLL-LARQVGVKHIVVFINK  179 (449)
T ss_pred             cceEeeeeeeeeccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcch-HHHHH-HHHHcCCceEEEEEec
Confidence            333334444454445556678999998875533333456799999999998542221 22221 2222223557778899


Q ss_pred             CCCCCCCC---CCHHHHHHHHHHhC-----CeEEEEecC
Q psy2518         139 IDLLDQSV---VAPEEADLLSRALG-----CRLMRTSVK  169 (208)
Q Consensus       139 ~Dl~~~~~---v~~~~~~~~~~~~~-----~~~~e~Sa~  169 (208)
                      .|+.++.+   .-+=+.+++..++|     ++++.-||.
T Consensus       180 vD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL  218 (449)
T KOG0460|consen  180 VDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSAL  218 (449)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchh
Confidence            99864221   11223445556665     477876654

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=93.02  E-value=2.5  Score=36.03  Aligned_cols=69  Identities=14%  Similarity=0.176  Sum_probs=46.1

Q ss_pred             hhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHH
Q psy2518         110 RDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED--INVNSIFRYLT  182 (208)
Q Consensus       110 ~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~--~~i~~~f~~i~  182 (208)
                      +++|... .+-..+++..  +.|++++.|-.+-.  ..-+.+.+.++..+++.+++.+++..-  ..|..++..++
T Consensus       162 Re~Y~eAEervI~ELk~i--gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL  233 (492)
T PF09547_consen  162 RENYVEAEERVIEELKEI--GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL  233 (492)
T ss_pred             hHHHHHHHHHHHHHHHHh--CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence            4455444 4455666665  78999999988742  334567778888899999988887654  34545544444

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=92.86  E-value=0.046  Score=43.77  Aligned_cols=55  Identities=15%  Similarity=0.078  Sum_probs=33.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      ..++++++|.+++||  +++++........ .+..|.......+.++.   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            458899999999999  3455544433221 22223233334444433   4689999997

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=92.84  E-value=0.11  Score=40.37  Aligned_cols=85  Identities=11%  Similarity=0.041  Sum_probs=51.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecC--ccccc---cccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRD--SFEAA---HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKA   93 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~--~f~~~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~   93 (208)
                      ..-|.++|..++||  +++.+...  .|...   ...|.|+-........ +....+.+.||+|......      ....
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~   85 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF   85 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence            45578899999999  45666666  66532   3455554444333322 3456799999999753322      1222


Q ss_pred             hhcC--CcEEEEEEeCCChhh
Q psy2518          94 YYRG--AQACVITFSTIDRDS  112 (208)
Q Consensus        94 ~~~~--~d~ii~v~d~~~~~s  112 (208)
                      .+..  ++++|+..+.+....
T Consensus        86 ~l~~llss~~i~n~~~~~~~~  106 (224)
T cd01851          86 ALATLLSSVLIYNSWETILGD  106 (224)
T ss_pred             HHHHHHhCEEEEeccCcccHH
Confidence            2333  788888777665443

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>cd01858 NGP_1 NGP-1

Probab=92.69  E-value=0.058  Score=39.15  Aligned_cols=54  Identities=11%  Similarity=-0.036  Sum_probs=30.0

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      ..+.++++|.+++||  +++.+...... ...++-|.......+..+.   .+.+.||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVC-KVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCce-eeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            356789999999999  34554443322 2222333222222233322   267999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PHA02518 ParA-like protein; Provisional

Probab=92.67  E-value=0.91  Score=34.30  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=42.4

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhcCCCC-EEEEEeCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWKMKVENECGEIP-TVLVQNKIDL  141 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl  141 (208)
                      ..+.+.|+||++..  .......+..+|.+|++...+. .++.   .+..++.......+..| ..++.|+.+.
T Consensus        75 ~~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~  145 (211)
T PHA02518         75 SGYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK  145 (211)
T ss_pred             ccCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence            34678999999863  3456677889999999998874 3333   34444444333222344 4566787653

>cd04128 Spg1 Spg1p

Probab=92.66  E-value=0.058  Score=40.27  Aligned_cols=47  Identities=23%  Similarity=0.473  Sum_probs=35.3

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ..+..+.|.+||++|+++|......++.+..++...+......+|..
T Consensus        44 ~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~   90 (182)
T cd04128          44 IRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNS   90 (182)
T ss_pred             ECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHH
Confidence            45778999999999999999988888888777776555433344433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01855 YqeH YqeH

Probab=92.61  E-value=0.032  Score=41.90  Aligned_cols=53  Identities=15%  Similarity=0.077  Sum_probs=28.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-------ccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      ..++++|.+++||  +++.+.......       ...+..|.......+.++.   .+.++||||
T Consensus       128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            5799999999999  344444332111       1111112222233333332   478999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG0448|consensus

Probab=92.60  E-value=0.9  Score=40.61  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             EEEEeCCChh---hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518          76 LMLWDTAGQE---EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA  152 (208)
Q Consensus        76 l~i~Dt~g~~---~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~  152 (208)
                      +.+.|.||.+   ...+-.-.+..++|++++|....+...... .+++....+.  .+-+.++-||+|.....+-+.+++
T Consensus       208 ivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~--KpniFIlnnkwDasase~ec~e~V  284 (749)
T KOG0448|consen  208 IVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE--KPNIFILNNKWDASASEPECKEDV  284 (749)
T ss_pred             ceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc--CCcEEEEechhhhhcccHHHHHHH
Confidence            4566777753   233334566789999999998887655443 3344443332  445677778999865444444444


Q ss_pred             HHHHHHhC--------CeEEEEecCC
Q psy2518         153 DLLSRALG--------CRLMRTSVKE  170 (208)
Q Consensus       153 ~~~~~~~~--------~~~~e~Sa~~  170 (208)
                      ..-..+++        =.+|.+||+.
T Consensus       285 ~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  285 LKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             HHHHHhcCcccHhhhcCeeEEEeccc
Confidence            33322221        2578899664

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=92.57  E-value=0.049  Score=40.45  Aligned_cols=55  Identities=11%  Similarity=0.043  Sum_probs=32.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      ...++++++|..++||  +++++....- ....+..|.......+.++.   .+.++||||
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~~~-~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRSRA-CNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCccc-ceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            3347999999999999  3444443322 12223333333333334432   478999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd04134 Rho3 Rho3 subfamily

Probab=92.49  E-value=0.12  Score=38.64  Aligned_cols=46  Identities=41%  Similarity=0.705  Sum_probs=35.3

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      .++..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus        43 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~   88 (189)
T cd04134          43 VDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLE   88 (189)
T ss_pred             ECCEEEEEEEEECCCChhccccccccccCCCEEEEEEECCCHHHHH
Confidence            4567789999999999999988888887877777655544445554

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PLN00023 GTP-binding protein; Provisional

Probab=92.45  E-value=0.062  Score=43.98  Aligned_cols=44  Identities=16%  Similarity=0.415  Sum_probs=35.0

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      +..+.+.+||++|+++|+.....++.+..++...+......+|.
T Consensus        80 ~k~v~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFe  123 (334)
T PLN00023         80 ERDFFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKT  123 (334)
T ss_pred             CceEEEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHH
Confidence            35688999999999999999999999988887766544444454

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=92.34  E-value=0.12  Score=37.86  Aligned_cols=46  Identities=39%  Similarity=0.717  Sum_probs=32.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      ..++..+.+.+||++|+++|....+.++.+..++...+......+|
T Consensus        42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf   87 (173)
T cd04130          42 LVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSF   87 (173)
T ss_pred             EECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCCHHHH
Confidence            3556778999999999999988887777777766654443333334

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>KOG1673|consensus

Probab=92.30  E-value=0.18  Score=36.65  Aligned_cols=111  Identities=16%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc---cccccccccceeeEEEEECCeEEEEEEEeCC
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWKMKVSIKRTIKECEGEEVRLMLWDTA   82 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~   82 (208)
                      ..|..++.-+||+.|++++...+.|...+..+..-.|.-......+   +=|....|..-....+-+ |.++. .+.|.+
T Consensus        64 i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilv-GTKyD-~fi~lp  141 (205)
T KOG1673|consen   64 IRGTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILV-GTKYD-LFIDLP  141 (205)
T ss_pred             ecceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEe-ccchH-hhhcCC
Confidence            4577888899999999999999999998887766533211111111   112222221111111111 11111 122333


Q ss_pred             C--hhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHH
Q psy2518          83 G--QEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS  118 (208)
Q Consensus        83 g--~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~  118 (208)
                      .  |+...+..+.|.+--++-++..+.+.--..+.+.+
T Consensus       142 ~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIFK  179 (205)
T KOG1673|consen  142 PELQETISRQARKYAKVMNASLFFCSTSHSINVQKIFK  179 (205)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHHH
Confidence            2  33444445556666666677777666555555543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=92.22  E-value=0.068  Score=43.08  Aligned_cols=56  Identities=14%  Similarity=0.062  Sum_probs=33.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      ..++++++|..++||  +++.+....... ..++.|+......+.+++   .+.++||||..
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            468899999999999  345444433221 122333333333444443   37899999973

>cd01873 RhoBTB RhoBTB subfamily

Probab=92.17  E-value=0.13  Score=38.94  Aligned_cols=46  Identities=26%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ..+|..+.|.+|||||++++  ....++.+..++...+......+|..
T Consensus        60 ~~~~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~  105 (195)
T cd01873          60 VVDGVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRN  105 (195)
T ss_pred             eeCCEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHH
Confidence            45788999999999999863  33456666666665555444444543

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=92.16  E-value=2.4  Score=30.95  Aligned_cols=84  Identities=17%  Similarity=0.081  Sum_probs=52.3

Q ss_pred             EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518          75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL  154 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~  154 (208)
                      .+.|+||++....  .....+..+|.++++.+.+. .++..+..++..+.+. +.....++.|+++...  ....+....
T Consensus        64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~-~~~~~~iv~N~~~~~~--~~~~~~~~~  137 (179)
T cd02036          64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL-GIKVVGVIVNRVRPDM--VEGGDMVED  137 (179)
T ss_pred             CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc-CCceEEEEEeCCcccc--cchhhHHHH
Confidence            6899999875332  23455688999999998774 4566666665555542 2345678899998532  222222344


Q ss_pred             HHHHhCCeEE
Q psy2518         155 LSRALGCRLM  164 (208)
Q Consensus       155 ~~~~~~~~~~  164 (208)
                      +.+.++.+++
T Consensus       138 ~~~~~~~~v~  147 (179)
T cd02036         138 IEEILGVPLL  147 (179)
T ss_pred             HHHHhCCCEE
Confidence            5555676554

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=92.11  E-value=0.12  Score=34.54  Aligned_cols=45  Identities=11%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM  121 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~  121 (208)
                      +.+.+.|+++....  .....+..+|.++++.+.+ ..++..+..+++
T Consensus        40 ~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~   84 (104)
T cd02042          40 YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDGLEKLLE   84 (104)
T ss_pred             CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence            67899999886432  2336677899999999876 567777766655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd04136 Rap_like Rap-like subfamily

Probab=91.81  E-value=0.075  Score=38.28  Aligned_cols=38  Identities=34%  Similarity=0.651  Sum_probs=30.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .++..+.+.+||++|+++|+.....++.+..++...+.
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136          44 VDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             ECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            45677889999999999998887777777777665444

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=91.53  E-value=0.11  Score=40.04  Aligned_cols=46  Identities=33%  Similarity=0.679  Sum_probs=35.1

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      .++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus        57 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~  102 (219)
T PLN03071         57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK  102 (219)
T ss_pred             ECCeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHH
Confidence            3566789999999999999988888888888877655544344443

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=91.44  E-value=4.3  Score=30.04  Aligned_cols=85  Identities=19%  Similarity=0.265  Sum_probs=60.3

Q ss_pred             hcCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518          95 YRGAQACVITFSTIDRD-------SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS  167 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  167 (208)
                      ++...+=.+++|.+|--       -..++..|+.++++..+...++||.|-.=..+  ....++++.+.+.+|++++.-+
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~  113 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHR  113 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeC
Confidence            55566667888877631       23567889999988755445888888753311  3457889999999999999888


Q ss_pred             cCCCCCHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYL  181 (208)
Q Consensus       168 a~~~~~i~~~f~~i  181 (208)
                      ++.-.+..++...+
T Consensus       114 ~kKP~~~~~i~~~~  127 (168)
T PF09419_consen  114 AKKPGCFREILKYF  127 (168)
T ss_pred             CCCCccHHHHHHHH
Confidence            87776666665544

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=91.37  E-value=0.097  Score=38.57  Aligned_cols=48  Identities=38%  Similarity=0.587  Sum_probs=36.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ..++..+.+.+||++|+++|+.....++.|..++...+......+|..
T Consensus        44 ~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~   91 (172)
T cd04141          44 RIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQE   91 (172)
T ss_pred             EECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHH
Confidence            346777899999999999999998888888888776555444445544

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04176 Rap2 Rap2 subgroup

Probab=91.33  E-value=0.083  Score=38.20  Aligned_cols=39  Identities=26%  Similarity=0.515  Sum_probs=30.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      .++..+.+++||++|+++|..+...++.+..++.-.+..
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~   82 (163)
T cd04176          44 VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSL   82 (163)
T ss_pred             ECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEEC
Confidence            356677899999999999999888887777776654443

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04175 Rap1 Rap1 subgroup

Probab=91.30  E-value=0.062  Score=38.93  Aligned_cols=38  Identities=34%  Similarity=0.656  Sum_probs=31.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .++..+.+.+||++|+++|....+.++.|..++...+.
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   81 (164)
T cd04175          44 VDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYS   81 (164)
T ss_pred             ECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEE
Confidence            45677889999999999999999888888887765544

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=91.23  E-value=0.16  Score=37.05  Aligned_cols=39  Identities=41%  Similarity=0.753  Sum_probs=30.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      ..+..+.+.+||++|+++|....+..+-+..++...+..
T Consensus        41 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174       41 VDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             ECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            456778899999999999988888777776666655443

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04117 Rab15 Rab15 subfamily

Probab=90.90  E-value=0.1  Score=37.87  Aligned_cols=46  Identities=41%  Similarity=0.820  Sum_probs=33.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      +++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus        44 ~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~   89 (161)
T cd04117          44 VDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQ   89 (161)
T ss_pred             ECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHH
Confidence            4567789999999999999888887777777766544433333443

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PRK13695 putative NTPase; Provisional

Probab=90.83  E-value=1.5  Score=32.21  Aligned_cols=47  Identities=13%  Similarity=0.106  Sum_probs=31.4

Q ss_pred             CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ..|++++.+|...       ......+....+..++++   +.+|-+++.+.+++.+
T Consensus       126 ~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~  172 (174)
T PRK13695        126 EKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL  172 (174)
T ss_pred             CCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence            6899999998543       123344555556677777   5566778888887754

>PTZ00369 Ras-like protein; Provisional

Probab=90.69  E-value=0.1  Score=39.02  Aligned_cols=45  Identities=38%  Similarity=0.576  Sum_probs=33.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      .++..+.+.+|||+|+++|......++.+..++...+......+|
T Consensus        48 ~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~   92 (189)
T PTZ00369         48 IDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSF   92 (189)
T ss_pred             ECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCCHHHH
Confidence            456778899999999999999888888777777665543333333

>cd04122 Rab14 Rab14 subfamily

Probab=90.64  E-value=0.089  Score=38.27  Aligned_cols=40  Identities=43%  Similarity=0.952  Sum_probs=30.9

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      ..++..+.+.+||++|+++|....+-++.+..++...+..
T Consensus        45 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~   84 (166)
T cd04122          45 EVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDI   84 (166)
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEEC
Confidence            3567788999999999999988877777777776655443

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04132 Rho4_like Rho4-like subfamily

Probab=90.60  E-value=0.12  Score=38.33  Aligned_cols=43  Identities=35%  Similarity=0.652  Sum_probs=31.5

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      +..+.+.+||++|+++|.......+.+..++.-.+......+|
T Consensus        46 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~   88 (187)
T cd04132          46 GKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSL   88 (187)
T ss_pred             CcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHH
Confidence            6678999999999999988877777777777655543333333

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=90.54  E-value=0.11  Score=39.34  Aligned_cols=45  Identities=49%  Similarity=0.885  Sum_probs=35.2

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      +..+.+.+||++|+++|....+.++.+..++...+......+|..
T Consensus        47 ~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~   91 (201)
T cd04107          47 NTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEA   91 (201)
T ss_pred             CCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHH
Confidence            678999999999999999998888888888876655433444443

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04144 Ras2 Ras2 subfamily

Probab=90.50  E-value=0.082  Score=39.59  Aligned_cols=39  Identities=31%  Similarity=0.601  Sum_probs=31.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      .++..+.+++||++|+++|......++.+..++...+..
T Consensus        42 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144          42 VDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             ECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            456778899999999999998888888888877765543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=90.46  E-value=0.13  Score=37.55  Aligned_cols=38  Identities=45%  Similarity=1.017  Sum_probs=30.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+++.+.+.+||++|+++|......++.+..++...+.
T Consensus        49 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d   86 (170)
T cd04116          49 VDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFA   86 (170)
T ss_pred             ECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEE
Confidence            46788899999999999998887777777766654443

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=90.08  E-value=3.8  Score=32.68  Aligned_cols=93  Identities=20%  Similarity=0.238  Sum_probs=52.0

Q ss_pred             cCCcEEEEEEeCCChh-------hHH----HHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC-----CCCCHHHHHHHHHH
Q psy2518          96 RGAQACVITFSTIDRD-------SFE----AAHSWKMKVENECG-EIPTVLVQNKIDLLDQ-----SVVAPEEADLLSRA  158 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~-------s~~----~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~-----~~v~~~~~~~~~~~  158 (208)
                      +..||+|+++|+++--       .+.    .+..-+.++.+..+ ..|+.+|.||+|+...     +..+.++.   ..-
T Consensus        24 ~PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~GF~ef~~~L~~~~r---~q~  100 (266)
T PF14331_consen   24 QPLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLPGFDEFFSDLSEEER---EQV  100 (266)
T ss_pred             CCCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCcccCHHHHHHhCCHHHH---hCC
Confidence            4579999999985421       122    22334455555555 8999999999998542     12222221   122


Q ss_pred             hCCeEEEEecCCCCC---HHHHHHHHHHHHHHHhhh
Q psy2518         159 LGCRLMRTSVKEDIN---VNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       159 ~~~~~~e~Sa~~~~~---i~~~f~~i~~~~~~~~~~  191 (208)
                      +|+.+=.-....+..   +++.|+.+...+......
T Consensus       101 lG~t~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~  136 (266)
T PF14331_consen  101 LGFTFPYDEDADGDAWAWFDEEFDELVARLNARVLE  136 (266)
T ss_pred             cccccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            344322222333334   777777777766655433

>KOG4423|consensus

Probab=89.75  E-value=0.074  Score=39.78  Aligned_cols=51  Identities=41%  Similarity=0.766  Sum_probs=41.2

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccccccccc
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM   58 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~~~t~   58 (208)
                      ..+++|.+||.|||++|..+-.+++.-+.+.-..|.......|+....+-.
T Consensus        72 ~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkq  122 (229)
T KOG4423|consen   72 KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQ  122 (229)
T ss_pred             HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHH
Confidence            356889999999999999999999999888877776666666766655554

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=89.73  E-value=2.7  Score=36.89  Aligned_cols=71  Identities=13%  Similarity=0.077  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe--cCCCCCHHHHHHHHHHHHH
Q psy2518         112 SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS--VKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       112 s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~~i~~~~~  186 (208)
                      .+.++.+.++.+++.  ..|++|+.||.|...+  -..+..+++|.+.|+++..+.  ++-|.|--++-+.+++.+.
T Consensus       357 Gl~NL~RHIenvr~F--GvPvVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~  429 (557)
T PRK13505        357 GFANLERHIENIRKF--GVPVVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE  429 (557)
T ss_pred             HHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence            345666666666554  7999999999997432  234667889999999876443  5556777777777766554

>KOG2423|consensus

Probab=89.71  E-value=1.6  Score=36.78  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=52.3

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i  174 (208)
                      +..+|+++-|.|.-||..-.. ...-..+.+..+...+|.|.||+||.. ..++..=...+++++..--|..|-....|-
T Consensus       211 iDSSDVvvqVlDARDPmGTrc-~~ve~ylkke~phKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~nsfGK  288 (572)
T KOG2423|consen  211 IDSSDVVVQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINNSFGK  288 (572)
T ss_pred             hcccceeEEeeeccCCccccc-HHHHHHHhhcCCcceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcCccch
Confidence            458999999999998854321 222233455556788999999999933 223333334444555545577786666665


Q ss_pred             HHHHH
Q psy2518         175 NSIFR  179 (208)
Q Consensus       175 ~~~f~  179 (208)
                      -.+.+
T Consensus       289 galI~  293 (572)
T KOG2423|consen  289 GALIQ  293 (572)
T ss_pred             hHHHH
Confidence            55544

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=89.61  E-value=4  Score=32.63  Aligned_cols=97  Identities=11%  Similarity=0.077  Sum_probs=57.6

Q ss_pred             EEEEEEEeCCChhhhcchh----Hh---h-----hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAIT----KA---Y-----YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~----~~---~-----~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.+-|.||+|........    ..   .     -..+|.+++|.|.+-.  .+.+.. .....+..  .+--+|.||.|
T Consensus       154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~-~~~f~~~~--~~~g~IlTKlD  228 (272)
T TIGR00064       154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQ-AKVFNEAV--GLTGIILTKLD  228 (272)
T ss_pred             CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHH-HHHHHhhC--CCCEEEEEccC
Confidence            3678999999964322211    11   1     1238999999999753  222221 22222221  24567789999


Q ss_pred             CCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         141 LLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       141 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      -..    ..-.+...+...+.++..++  +|++++++-..
T Consensus       229 e~~----~~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~~  262 (272)
T TIGR00064       229 GTA----KGGIILSIAYELKLPIKFIG--VGEKIDDLAPF  262 (272)
T ss_pred             CCC----CccHHHHHHHHHCcCEEEEe--CCCChHhCccC
Confidence            633    23344556667788888888  78888776443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd04124 RabL2 RabL2 subfamily

Probab=89.57  E-value=0.18  Score=36.57  Aligned_cols=37  Identities=43%  Similarity=0.956  Sum_probs=27.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .++..+.+.+||++|+++|......++.+..++...+
T Consensus        44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124          44 FEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             ECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            4567889999999999998877766666665555433

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0459|consensus

Probab=89.51  E-value=0.95  Score=38.12  Aligned_cols=106  Identities=20%  Similarity=0.182  Sum_probs=62.3

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---hhHHHHHHH--HHHHHhhcCCCCEEEEEeCCCCCCC--CC
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR---DSFEAAHSW--KMKVENECGEIPTVLVQNKIDLLDQ--SV  146 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~--~~~~~~~~~~~piivvgnK~Dl~~~--~~  146 (208)
                      -.+.|.|++|+..|....-.-...||..++|.+.--.   ..|+.=.+-  -..+.+-..-...|++.||.|-+.-  +.
T Consensus       157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~  236 (501)
T KOG0459|consen  157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN  236 (501)
T ss_pred             eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence            4688999999988766444446678888888876321   123221010  1112222235678889999996321  11


Q ss_pred             C----CHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2518         147 V----APEEADLLSRALG------CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       147 v----~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f~  179 (208)
                      -    ..+....+.+..|      ..|+.||..+|.++.+.-.
T Consensus       237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence            1    1122333444333      3689999999999887543

>cd04135 Tc10 TC10 subfamily

Probab=89.33  E-value=0.36  Score=35.21  Aligned_cols=38  Identities=34%  Similarity=0.555  Sum_probs=27.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .+++..+.+.+||++|++.|.......+.+..++...+
T Consensus        42 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135          42 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             EECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            45667788999999999998877776665555544433

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04127 Rab27A Rab27a subfamily

Probab=89.19  E-value=0.14  Score=37.74  Aligned_cols=36  Identities=44%  Similarity=0.923  Sum_probs=28.4

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      +..+.+.+||++|+++|......++.+..++...+.
T Consensus        60 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   95 (180)
T cd04127          60 GQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD   95 (180)
T ss_pred             CCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEE
Confidence            456889999999999998887777777766665444

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=89.00  E-value=0.26  Score=35.99  Aligned_cols=39  Identities=38%  Similarity=0.823  Sum_probs=29.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      .++..+.+.+||++|++++......++.+..++...+..
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~   82 (166)
T cd00877          44 TNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDV   82 (166)
T ss_pred             ECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEEC
Confidence            356678999999999999888777777777666554443

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>PLN03110 Rab GTPase; Provisional

Probab=88.94  E-value=0.13  Score=39.58  Aligned_cols=45  Identities=47%  Similarity=0.916  Sum_probs=34.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      ..+..+.+.+||++|+++|......++.+..++...+......+|
T Consensus        56 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~  100 (216)
T PLN03110         56 VEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF  100 (216)
T ss_pred             ECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHH
Confidence            456778999999999999999999888888887765553333334

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=88.63  E-value=0.16  Score=37.36  Aligned_cols=38  Identities=55%  Similarity=0.925  Sum_probs=29.2

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      +++..+.+.+||++|+++|......++.+..++...+.
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108          44 ILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             ECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            45777899999999999988877777777666655443

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04143 Rhes_like Rhes_like subfamily

Probab=88.54  E-value=0.2  Score=39.48  Aligned_cols=47  Identities=30%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      .+++..+.|.+||++|+++|......++.+..++...|......+|.
T Consensus        42 ~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~   88 (247)
T cd04143          42 SIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFE   88 (247)
T ss_pred             EECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHH
Confidence            45677889999999999999888777777777766555543344444

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=88.40  E-value=0.4  Score=34.24  Aligned_cols=38  Identities=37%  Similarity=0.625  Sum_probs=28.8

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .++..+.+.+||++|+++|......++.+..++...+.
T Consensus        44 ~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~   81 (162)
T cd04138          44 IDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA   81 (162)
T ss_pred             ECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence            45566778899999999998888877777776665444

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01870 RhoA_like RhoA-like subfamily

Probab=88.33  E-value=0.44  Score=34.79  Aligned_cols=35  Identities=37%  Similarity=0.787  Sum_probs=26.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..+..+.+.+||++|+++|....+..+.+..++..
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   78 (175)
T cd01870          44 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM   78 (175)
T ss_pred             ECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE
Confidence            45677899999999999988877776655555543

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04118 Rab24 Rab24 subfamily

Probab=88.32  E-value=0.31  Score=36.34  Aligned_cols=39  Identities=38%  Similarity=0.873  Sum_probs=30.7

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...+..+.+.+||++|++++..+.+.++.+..++...+.
T Consensus        44 ~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d   82 (193)
T cd04118          44 VVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYD   82 (193)
T ss_pred             EECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEE
Confidence            346777889999999999998888877777777665554

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>KOG3929|consensus

Probab=88.13  E-value=0.45  Score=37.65  Aligned_cols=85  Identities=5%  Similarity=0.021  Sum_probs=44.7

Q ss_pred             ceeeeEEEecCceEEEEEEeeecCcccccc---ccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhh--c--
Q psy2518          25 DAITKAYYRGAQACVITFSTIDRDSFEAAH---SWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYY--R--   96 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~~~~~~~~~f~~~~---~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~--~--   96 (208)
                      +..+-|.+.|..+....++    ..|+-+.   .||...+|..-.-.-.+ .+-..++|+-+|......+..--+  +  
T Consensus        43 ~~E~~I~~~Gn~~~tt~I~----~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l  118 (363)
T KOG3929|consen   43 KFEFFIGSKGNGGKTTIIL----RCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTL  118 (363)
T ss_pred             cceeEEEEecCCceeEeeh----hhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccch
Confidence            4456677888877733333    4555444   44444343322211122 233467999888654433322111  1  


Q ss_pred             CCcEEEEEEeCCChhhH
Q psy2518          97 GAQACVITFSTIDRDSF  113 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~  113 (208)
                      ..-.+|++.|+++++.+
T Consensus       119 ~~~slIL~LDls~p~~~  135 (363)
T KOG3929|consen  119 RTFSLILVLDLSKPNDL  135 (363)
T ss_pred             hhhhheeeeecCChHHH
Confidence            12346889999998643

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=87.88  E-value=9.1  Score=28.29  Aligned_cols=144  Identities=13%  Similarity=0.122  Sum_probs=78.6

Q ss_pred             eeeeEEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCC-Chh------------------
Q psy2518          26 AITKAYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTA-GQE------------------   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~-g~~------------------   85 (208)
                      ...||.+-|..|+||+ +.....+.... ..-++| -++..++.-+|..+-+.|.|.. |.+                  
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~-~g~kvg-Gf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V   81 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLRE-KGYKVG-GFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV   81 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHh-cCceee-eEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence            4689999999999993 22111222222 223344 4566777778888888888876 211                  


Q ss_pred             -------hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHH
Q psy2518          86 -------EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSR  157 (208)
Q Consensus        86 -------~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~  157 (208)
                             ..-...+..++.||+++  .|---+-.+. .+++...+..... ..|++....+.+. +      ...+ -.+
T Consensus        82 ~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr-~------P~v~-~ik  150 (179)
T COG1618          82 NVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSR-H------PLVQ-RIK  150 (179)
T ss_pred             eHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccC-C------hHHH-Hhh
Confidence                   11122334556678654  4533332221 1344444444444 6787777776653 1      1122 233


Q ss_pred             HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         158 ALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       158 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ..+.-++.   .+-.|-+.+++.+...+
T Consensus       151 ~~~~v~v~---lt~~NR~~i~~~Il~~L  175 (179)
T COG1618         151 KLGGVYVF---LTPENRNRILNEILSVL  175 (179)
T ss_pred             hcCCEEEE---EccchhhHHHHHHHHHh
Confidence            34443433   56677778888777654

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=87.67  E-value=6.1  Score=30.56  Aligned_cols=64  Identities=14%  Similarity=0.171  Sum_probs=42.5

Q ss_pred             EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCEEEEEeCCCC
Q psy2518          75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDL  141 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~piivvgnK~Dl  141 (208)
                      .+-|.||++..  .......+..+|.++++...+ ..++..+..-+..+.+ .....+.-++.|++|.
T Consensus       116 D~viiD~pp~~--~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~  180 (246)
T TIGR03371       116 DWVLIDVPRGP--SPITRQALAAADLVLVVVNAD-AACYATLHQQALALFAGSGPRIGPHFLINQFDP  180 (246)
T ss_pred             CEEEEECCCCc--hHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHhhcccccccceEEeeccCc
Confidence            68999999842  234566778999999999876 4555555532333332 2224557788999985

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>cd04112 Rab26 Rab26 subfamily

Probab=87.67  E-value=0.24  Score=37.04  Aligned_cols=38  Identities=47%  Similarity=0.945  Sum_probs=28.9

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+..+.+.+||++|++++......++.+..++...+.
T Consensus        45 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D   82 (191)
T cd04112          45 VDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYD   82 (191)
T ss_pred             ECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEE
Confidence            45677899999999999988877777777666655444

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04125 RabA_like RabA-like subfamily

Probab=87.65  E-value=0.24  Score=36.83  Aligned_cols=47  Identities=38%  Similarity=0.861  Sum_probs=34.7

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..++..+.+.+||++|+++|....+.++.+..++...+......+|.
T Consensus        43 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~   89 (188)
T cd04125          43 YIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFE   89 (188)
T ss_pred             EECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHH
Confidence            34567889999999999999988888888888877655543333333

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=87.17  E-value=0.21  Score=35.93  Aligned_cols=35  Identities=86%  Similarity=1.446  Sum_probs=26.1

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      +..+.+++||++|+++|......++.+..++...+
T Consensus        48 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~   82 (162)
T cd04106          48 DEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVF   82 (162)
T ss_pred             CCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEE
Confidence            66789999999999988877666666665555433

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd01865 Rab3 Rab3 subfamily

Probab=87.12  E-value=0.24  Score=35.97  Aligned_cols=37  Identities=46%  Similarity=0.944  Sum_probs=27.4

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      +++.+.+.+||++|+++|......++.+..++...+.
T Consensus        46 ~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d   82 (165)
T cd01865          46 NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD   82 (165)
T ss_pred             CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEE
Confidence            4667899999999999888776666666666655444

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=87.07  E-value=0.18  Score=36.30  Aligned_cols=38  Identities=21%  Similarity=0.604  Sum_probs=28.8

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+..+.+.+||++|+++|....+.++-+..++...+.
T Consensus        44 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D   81 (168)
T cd04119          44 VRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYD   81 (168)
T ss_pred             ECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEE
Confidence            35678899999999999888777777766666555443

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=87.00  E-value=7.5  Score=29.56  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=51.8

Q ss_pred             eEEEEEEEeCCChhhhcchh-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCC-EEEEEeCCCCCCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAIT-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIP-TVLVQNKIDLLDQSVV  147 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p-iivvgnK~Dl~~~~~v  147 (208)
                      ..+.+.+.||+|......+. ....+.||.++++.+.+ ..+...+...+..+.....  +.+ ..++.|+++..    .
T Consensus       115 ~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~----~  189 (212)
T cd02117         115 DDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD----R  189 (212)
T ss_pred             cCCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc----c
Confidence            45788999997644322211 11124799999999875 4555554444444433322  333 45889999853    3


Q ss_pred             CHHHHHHHHHHhCCeEE
Q psy2518         148 APEEADLLSRALGCRLM  164 (208)
Q Consensus       148 ~~~~~~~~~~~~~~~~~  164 (208)
                      ..+..+++.+.++.+.+
T Consensus       190 ~~~~~~~~~~~~~~~vl  206 (212)
T cd02117         190 ETELIDAFAERLGTQVI  206 (212)
T ss_pred             HHHHHHHHHHHcCCCEE
Confidence            34556677777776554

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=86.93  E-value=0.23  Score=35.73  Aligned_cols=38  Identities=39%  Similarity=0.637  Sum_probs=28.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .++..+.+.+||++|++++.....-++.+..++...+.
T Consensus        45 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   82 (164)
T cd04145          45 IDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFS   82 (164)
T ss_pred             ECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            45667889999999999888877777777666654433

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=86.76  E-value=0.28  Score=37.38  Aligned_cols=34  Identities=47%  Similarity=1.006  Sum_probs=30.9

Q ss_pred             eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518          10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus        10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+.+.+||++||++|+.....+..|..++...+.
T Consensus        53 ~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d   86 (219)
T COG1100          53 NIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYD   86 (219)
T ss_pred             EEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEe
Confidence            7889999999999999999999999999887554

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=86.54  E-value=5.1  Score=26.90  Aligned_cols=61  Identities=13%  Similarity=-0.003  Sum_probs=41.2

Q ss_pred             EEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeC
Q psy2518          75 RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNK  138 (208)
Q Consensus        75 ~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK  138 (208)
                      .+.|.||++...  ......+..+|.++++.+.+ ..+...+..+++.+.+...  ...+.+|.|+
T Consensus        44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            689999987543  22345678899999998876 4567767776666655432  2456666664

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=86.48  E-value=6.7  Score=32.18  Aligned_cols=97  Identities=11%  Similarity=0.101  Sum_probs=57.2

Q ss_pred             eEEEEEEEeCCChhhhc--------chhHh----hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518          72 EEVRLMLWDTAGQEEFD--------AITKA----YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKI  139 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~--------~~~~~----~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~  139 (208)
                      ..+.+.|.||+|.....        .+...    .-...+..++|.|.+..  .+.+.+ .....+.  -.+--+|.||.
T Consensus       195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~--~~~~giIlTKl  269 (318)
T PRK10416        195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA--VGLTGIILTKL  269 (318)
T ss_pred             CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh--CCCCEEEEECC
Confidence            34678999999963321        11111    01246778899998853  222322 1112111  23456788999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         140 DLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      |-..    .--.+...+...+.|+..++  +|++++++-.
T Consensus       270 D~t~----~~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        270 DGTA----KGGVVFAIADELGIPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCC----CccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence            9432    23345566777899998888  7888877644

>KOG0447|consensus

Probab=86.09  E-value=7.5  Score=34.36  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=49.8

Q ss_pred             EEEEEeCCCh-------------hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH-HhhcC-CCCEEEEEeCC
Q psy2518          75 RLMLWDTAGQ-------------EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECG-EIPTVLVQNKI  139 (208)
Q Consensus        75 ~l~i~Dt~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~-~~~~~-~~piivvgnK~  139 (208)
                      ...+.|.||-             +....+.+.++.+.++||+|.-=-   |.+.-......+ .+.-| ...-|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            4556787772             344556788999999999997422   222111122222 22233 67789999999


Q ss_pred             CCCCCCCCCHHHHHHHHH
Q psy2518         140 DLLDQSVVAPEEADLLSR  157 (208)
Q Consensus       140 Dl~~~~~v~~~~~~~~~~  157 (208)
                      |+.++..-++..+++...
T Consensus       490 DlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             chhhhccCCHHHHHHHHh
Confidence            997765666666665543

>cd04177 RSR1 RSR1 subgroup

Probab=85.87  E-value=0.65  Score=33.74  Aligned_cols=35  Identities=31%  Similarity=0.620  Sum_probs=27.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..+..+.+.+||++|+++|......++.+..++..
T Consensus        44 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl   78 (168)
T cd04177          44 IDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL   78 (168)
T ss_pred             ECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence            45677889999999999988887777777665543

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=85.78  E-value=0.32  Score=35.15  Aligned_cols=54  Identities=11%  Similarity=0.057  Sum_probs=28.8

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCC
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG   83 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g   83 (208)
                      .....++++|.+++|| + ++.+.... +.....+....+  ...+..+   ..+.+.||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence            4567799999999999 3 34333322 111111111111  2222332   2478999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=85.71  E-value=9.3  Score=31.91  Aligned_cols=66  Identities=15%  Similarity=0.193  Sum_probs=53.2

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDL  141 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl  141 (208)
                      .+.+.+.|-| +. .......++..+|.+++|.+.+ -.+..+.++.+..+++..+ ..+..++.||.+.
T Consensus       217 ~~~~vV~Dlp-~~-~~~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~  283 (366)
T COG4963         217 SFDFVVVDLP-NI-WTDWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLRPNDPKPILVLNRVGV  283 (366)
T ss_pred             cCCeEEEcCC-Cc-cchHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCC
Confidence            5667888988 22 2234667899999999999987 5688888999999998887 7888899999985

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.60  E-value=4.9  Score=38.73  Aligned_cols=109  Identities=19%  Similarity=0.064  Sum_probs=60.1

Q ss_pred             EEEecCceEEE-EEEeeecCccccccc----cccccceeeEEE--EECCeEEEEEEEeCCChh--------hhcchhHhh
Q psy2518          30 AYYRGAQACVI-TFSTIDRDSFEAAHS----WKMKVSIKRTIK--ECEGEEVRLMLWDTAGQE--------EFDAITKAY   94 (208)
Q Consensus        30 i~~vG~s~~gk-~~~~~~~~~f~~~~~----~t~~~~~~~~~~--~~~~~~~~l~i~Dt~g~~--------~~~~~~~~~   94 (208)
                      .+++|.-|+|| +.+......|.-...    .+.+..  ...+  .+..   .--+.||+|..        .-...|..+
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g--T~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~f  202 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG--TRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGF  202 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCC--CcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHH
Confidence            36789999999 445444555542111    111110  0111  1112   24577888831        112233322


Q ss_pred             ---------hcCCcEEEEEEeCCChhh----H-----HHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC
Q psy2518          95 ---------YRGAQACVITFSTIDRDS----F-----EAAHSWKMKVENECG-EIPTVLVQNKIDLLD  143 (208)
Q Consensus        95 ---------~~~~d~ii~v~d~~~~~s----~-----~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~  143 (208)
                               .+..|+|++..|+.+--+    .     ..+..=+.++..... ..|++++.||.|+..
T Consensus       203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                     457899999999865321    1     122333455555555 899999999999854

>cd04111 Rab39 Rab39 subfamily

Probab=85.19  E-value=0.35  Score=36.98  Aligned_cols=45  Identities=47%  Similarity=0.938  Sum_probs=32.8

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      .+..+.+++||++|+++|....+.++.+..++...+......+|.
T Consensus        48 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~   92 (211)
T cd04111          48 PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFE   92 (211)
T ss_pred             CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHH
Confidence            466789999999999999988888887777766555433333333

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=85.07  E-value=0.38  Score=34.86  Aligned_cols=36  Identities=19%  Similarity=0.364  Sum_probs=25.7

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .+..+.+.+||++|+++|....+..+.+..++...+
T Consensus        45 ~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140          45 SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            456788999999999988876666665555554433

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=84.75  E-value=0.4  Score=36.19  Aligned_cols=37  Identities=49%  Similarity=1.044  Sum_probs=29.6

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ++..+.+.+||++|++.|+.....++.+..++...+.
T Consensus        51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D   87 (199)
T cd04110          51 NGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYD   87 (199)
T ss_pred             CCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEE
Confidence            4667889999999999999888888877776655444

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=84.66  E-value=0.31  Score=35.11  Aligned_cols=38  Identities=39%  Similarity=0.653  Sum_probs=28.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+..+.+.+||++|+++|....+.++.+..++...+.
T Consensus        43 ~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173       43 IDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             ECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            45667899999999999998877777766666654444

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PRK14974 cell division protein FtsY; Provisional

Probab=84.62  E-value=7.8  Score=32.08  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=56.2

Q ss_pred             EEEEEEeCCChhhhcc----hhHhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDA----ITKAY--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV  147 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v  147 (208)
                      +.+.+.||+|......    .....  ....|.+++|.|.+....--..   .....+.  -.+--++.||.|....   
T Consensus       223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~---a~~f~~~--~~~~giIlTKlD~~~~---  294 (336)
T PRK14974        223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQ---AREFNEA--VGIDGVILTKVDADAK---  294 (336)
T ss_pred             CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHH---HHHHHhc--CCCCEEEEeeecCCCC---
Confidence            4589999999643211    11111  2357889999998764321111   1111111  1234667899996332   


Q ss_pred             CHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         148 APEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       148 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                       --.+...+...+.|+..++  +|++++++...
T Consensus       295 -~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~  324 (336)
T PRK14974        295 -GGAALSIAYVIGKPILFLG--VGQGYDDLIPF  324 (336)
T ss_pred             -ccHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence             2334555666788888887  78988876543

>TIGR00092 GTP-binding protein YchF

Probab=84.52  E-value=1.1  Score=37.53  Aligned_cols=80  Identities=11%  Similarity=0.001  Sum_probs=47.4

Q ss_pred             eeEEEecCceEEE-E-EEeeecCcc--ccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhhh-
Q psy2518          28 TKAYYRGAQACVI-T-FSTIDRDSF--EAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEF-   87 (208)
Q Consensus        28 ~ki~~vG~s~~gk-~-~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~-   87 (208)
                      +|+-++|..++|| + |+.+....-  ...|+-|. .+-....+.+.+.               +..+++.|.||...- 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftT-i~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTT-IEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCC-CCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            6899999999999 3 444433333  12343331 1222233334332               246889999996432 


Q ss_pred             ---cchhH---hhhcCCcEEEEEEeCC
Q psy2518          88 ---DAITK---AYYRGAQACVITFSTI  108 (208)
Q Consensus        88 ---~~~~~---~~~~~~d~ii~v~d~~  108 (208)
                         ..+..   ..++.+|+++.|.+..
T Consensus        82 s~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        82 SKGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence               22333   3468999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=84.46  E-value=6.6  Score=30.58  Aligned_cols=65  Identities=12%  Similarity=0.049  Sum_probs=43.9

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      .+.+.|.|+++...  ......+..+|.++++...+ ..++..+...+..+.+.. ..++.++.|+.+.
T Consensus       111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~iviN~~~~  175 (261)
T TIGR01968       111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAKG-IEKIHLIVNRLRP  175 (261)
T ss_pred             hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHcC-CCceEEEEeCcCc
Confidence            46788999987532  22345567899999998876 556666666655555432 2467778898874

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=84.36  E-value=0.24  Score=35.92  Aligned_cols=36  Identities=17%  Similarity=0.564  Sum_probs=29.1

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+.+.+.+||++|+++|+...+-++.|..++.-.+.
T Consensus        41 ~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D   76 (159)
T cd04150          41 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD   76 (159)
T ss_pred             ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            346889999999999998888888888887766544

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=84.27  E-value=0.37  Score=34.88  Aligned_cols=38  Identities=47%  Similarity=1.010  Sum_probs=26.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .++..+.+.+||++|+++|....+-++.+..++.-.+.
T Consensus        46 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d   83 (166)
T cd01869          46 LDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD   83 (166)
T ss_pred             ECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEE
Confidence            35667789999999998887776666655555554433

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04126 Rab20 Rab20 subfamily

Probab=84.19  E-value=0.39  Score=37.10  Aligned_cols=44  Identities=34%  Similarity=0.702  Sum_probs=31.5

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ..+.|.+||++|+++|..+...++.+..++...+......+|..
T Consensus        42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~   85 (220)
T cd04126          42 GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEE   85 (220)
T ss_pred             eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHH
Confidence            35678999999999998887777777777766555443444443

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=84.10  E-value=0.22  Score=41.86  Aligned_cols=82  Identities=11%  Similarity=0.137  Sum_probs=57.7

Q ss_pred             eEEEecCceEEE-EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeC
Q psy2518          29 KAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST  107 (208)
Q Consensus        29 ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~  107 (208)
                      -++++|..|+|| ++..+..+-|    .|.-|      .+-.||+++     |-...|+|+++....+.+-+.+=-.+..
T Consensus       351 lvFliG~NGsGKST~~~LLtGL~----~PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~  415 (546)
T COG4615         351 LVFLIGGNGSGKSTLAMLLTGLY----QPQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGP  415 (546)
T ss_pred             EEEEECCCCCcHHHHHHHHhccc----CCCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCC
Confidence            378899999999 5665556644    55444      234566553     4445689999888888777666556666


Q ss_pred             CChhhHHHHHHHHHHHHh
Q psy2518         108 IDRDSFEAAHSWKMKVEN  125 (208)
Q Consensus       108 ~~~~s~~~~~~~~~~~~~  125 (208)
                      .+..|.+.+..|++.+.-
T Consensus       416 e~~as~q~i~~~LqrLel  433 (546)
T COG4615         416 EGKASPQLIEKWLQRLEL  433 (546)
T ss_pred             ccCCChHHHHHHHHHHHH
Confidence            776788889999988753

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=84.09  E-value=12  Score=29.65  Aligned_cols=83  Identities=17%  Similarity=0.186  Sum_probs=49.0

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCE-EEEEeCCCCCCCCCCCH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--CGEIPT-VLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~pi-ivvgnK~Dl~~~~~v~~  149 (208)
                      .+.+.|+||+|...... ....+..||.+|++...+ ..++..+...+..+.+.  ..+.++ -++.|+.+.       .
T Consensus       117 ~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~-~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~-------~  187 (270)
T PRK13185        117 DYDVILFDVLGDVVCGG-FAAPLQYADYALIVTAND-FDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG-------T  187 (270)
T ss_pred             cCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCc-hhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh-------H
Confidence            57789999976532222 223466799999988663 55666655554444332  225554 377899762       2


Q ss_pred             HHHHHHHHHhCCeEE
Q psy2518         150 EEADLLSRALGCRLM  164 (208)
Q Consensus       150 ~~~~~~~~~~~~~~~  164 (208)
                      +..+++.+.++.+++
T Consensus       188 ~~~~~~~~~~g~~vl  202 (270)
T PRK13185        188 DLIDKFNEAVGLKVL  202 (270)
T ss_pred             HHHHHHHHHcCCCEE
Confidence            344556666655433

>PLN03118 Rab family protein; Provisional

Probab=83.76  E-value=0.37  Score=36.69  Aligned_cols=38  Identities=42%  Similarity=0.927  Sum_probs=28.5

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+..+.+.+||++|+++|......++.+..++...+.
T Consensus        57 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D   94 (211)
T PLN03118         57 VGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYD   94 (211)
T ss_pred             ECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            45677899999999999988877666666666555443

>CHL00175 minD septum-site determining protein; Validated

Probab=83.70  E-value=7.8  Score=30.86  Aligned_cols=65  Identities=12%  Similarity=0.023  Sum_probs=42.5

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      .+.+.|+||++.-.  ......+..+|.+++|.+.+ ..+...+...+..+.+.. ...+-+|.|+++.
T Consensus       126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~~-~~~~~lvvN~~~~  190 (281)
T CHL00175        126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEANG-IYNVKLLVNRVRP  190 (281)
T ss_pred             CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHcC-CCceEEEEeccCh
Confidence            46789999987532  23344567799999998766 556666655555555432 2345677899874

>cd01861 Rab6 Rab6 subfamily

Probab=83.60  E-value=1.1  Score=32.00  Aligned_cols=32  Identities=47%  Similarity=0.847  Sum_probs=22.6

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC   38 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~   38 (208)
                      .+..+.+.+||++|++++.......+.+..++
T Consensus        45 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~i   76 (161)
T cd01861          45 EDKTVRLQLWDTAGQERFRSLIPSYIRDSSVA   76 (161)
T ss_pred             CCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence            45567899999999988877665555554443

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=83.57  E-value=0.39  Score=34.48  Aligned_cols=37  Identities=38%  Similarity=0.815  Sum_probs=26.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT   41 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~   41 (208)
                      ..++..+.+.+||++|++++....+.++.+..++...
T Consensus        44 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860          44 NLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             EECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            4566788999999999988777666655555554443

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0096|consensus

Probab=83.45  E-value=1.7  Score=32.75  Aligned_cols=35  Identities=37%  Similarity=0.757  Sum_probs=30.6

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+++..|||||||.+...--.++++.++....|.
T Consensus        57 g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFd   91 (216)
T KOG0096|consen   57 GQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFD   91 (216)
T ss_pred             CcEEEEeeecccceeecccccccEEecceeEEEee
Confidence            37899999999999999999999999988876444

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=82.98  E-value=13  Score=27.01  Aligned_cols=88  Identities=11%  Similarity=0.034  Sum_probs=53.4

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-----C
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-----Q  144 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-----~  144 (208)
                      ..+.+-|.||++...  .......  ..+|.++++...+ +.+...+..++..+.+.. ....-++.|+.+...     .
T Consensus        66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~-~~~~gvv~N~~~~~~~~~~~~  141 (169)
T cd02037          66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN-IPILGVVENMSYFVCPHCGKK  141 (169)
T ss_pred             CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC-CCeEEEEEcCCcccCCCCCCc
Confidence            456789999987532  1112222  5789999998776 567777777777776652 223456789987421     1


Q ss_pred             CCC-CHHHHHHHHHHhCCeE
Q psy2518         145 SVV-APEEADLLSRALGCRL  163 (208)
Q Consensus       145 ~~v-~~~~~~~~~~~~~~~~  163 (208)
                      ... ..+..+++++.++.++
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~  161 (169)
T cd02037         142 IYIFGKGGGEKLAEELGVPL  161 (169)
T ss_pred             ccccCCccHHHHHHHcCCCE
Confidence            111 2245566777666544

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>cd01868 Rab11_like Rab11-like

Probab=82.46  E-value=0.43  Score=34.45  Aligned_cols=35  Identities=49%  Similarity=0.930  Sum_probs=24.0

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      ..++..+.+++||++|+++|....+..+-+..++.
T Consensus        46 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i   80 (165)
T cd01868          46 QIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL   80 (165)
T ss_pred             EECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence            34567788999999999887766655554444443

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=82.42  E-value=0.47  Score=34.46  Aligned_cols=38  Identities=47%  Similarity=1.003  Sum_probs=27.1

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+..+.+.+||++|++++....+-++.+..++.-.+.
T Consensus        47 ~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d   84 (167)
T cd01867          47 LDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYD   84 (167)
T ss_pred             ECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEE
Confidence            45677899999999998888776655555555554443

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=82.20  E-value=1.6  Score=27.96  Aligned_cols=73  Identities=11%  Similarity=0.010  Sum_probs=40.4

Q ss_pred             EEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-hHhhhcCCcEEEEEEeC
Q psy2518          30 AYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-TKAYYRGAQACVITFST  107 (208)
Q Consensus        30 i~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~~d~ii~v~d~  107 (208)
                      +.+.|..|+||+ +.......+...     |    .+...++    .+.+.|+++....... .......+|.++++.+.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~-----g----~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~   68 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKR-----G----KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP   68 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC-----C----CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence            567788899993 221111222111     1    1222333    6789999876432211 14566789999999987


Q ss_pred             CChhhHHHH
Q psy2518         108 IDRDSFEAA  116 (208)
Q Consensus       108 ~~~~s~~~~  116 (208)
                      +.. +....
T Consensus        69 ~~~-~~~~~   76 (99)
T cd01983          69 EAL-AVLGA   76 (99)
T ss_pred             chh-hHHHH
Confidence            743 44443

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=82.10  E-value=23  Score=28.55  Aligned_cols=113  Identities=22%  Similarity=0.210  Sum_probs=60.7

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh--cCCCCE-EEEEeCCCCCCC-----
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENE--CGEIPT-VLVQNKIDLLDQ-----  144 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~--~~~~pi-ivvgnK~Dl~~~-----  144 (208)
                      .+.+.|.||+|.-.... ....+..||.++++.+.+ +.++..+...+..+...  .++.+. -++.|+.+....     
T Consensus       115 ~yD~IiIDt~~~l~~~a-~~aal~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~~~~~~~  192 (290)
T CHL00072        115 EYDIILFDVLGDVVCGG-FAAPLNYADYCIIITDNG-FDALFAANRIAASVREKARTHPLRLAGLVGNRTSKRDLIDKYV  192 (290)
T ss_pred             cCCEEEEecCCcceech-hhhhhhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCchhHHHHHH
Confidence            46789999976522111 123456799999988765 45655554444333322  223333 477899873110     


Q ss_pred             --------CCCCHHHHHHHHHHhCCeEEEEecCCCCC---HHHHHHHHHHHHHHH
Q psy2518         145 --------SVVAPEEADLLSRALGCRLMRTSVKEDIN---VNSIFRYLTTKCLSE  188 (208)
Q Consensus       145 --------~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~---i~~~f~~i~~~~~~~  188 (208)
                              ..++.......+...+.++++.+.. ..+   ....|..+++.++.+
T Consensus       193 ~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~-s~~~~~~a~~y~~La~ell~~  246 (290)
T CHL00072        193 EACPMPVLEVLPLIEDIRVSRVKGKTLFEMVES-EPSLNYVCDYYLNIADQLLSQ  246 (290)
T ss_pred             HHcCCceEEECCCChHHHHHHhCCCceEEeCCC-CcchhHHHHHHHHHHHHHHhC
Confidence                    0122222333334445556655432 222   466688888887654

>cd04109 Rab28 Rab28 subfamily

Probab=82.08  E-value=0.52  Score=36.04  Aligned_cols=43  Identities=30%  Similarity=0.536  Sum_probs=32.5

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus        48 ~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~   90 (215)
T cd04109          48 LNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFE   90 (215)
T ss_pred             CEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHH
Confidence            4689999999999999988888888888777655543333443

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01864 Rab19 Rab19 subfamily

Probab=82.02  E-value=0.54  Score=33.98  Aligned_cols=37  Identities=51%  Similarity=1.023  Sum_probs=25.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .++..+.+.+||++|+++|....+-++.+..++...+
T Consensus        47 ~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~   83 (165)
T cd01864          47 IEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAY   83 (165)
T ss_pred             ECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEE
Confidence            3566688999999999888776555555555554433

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=81.91  E-value=0.46  Score=34.79  Aligned_cols=35  Identities=26%  Similarity=0.701  Sum_probs=26.4

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+.+.+||++|+++|+.....++.+..++.-.+.
T Consensus        51 ~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D   85 (168)
T cd04149          51 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   85 (168)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence            45889999999999988877666777666655444

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN00223 ADP-ribosylation factor; Provisional

Probab=81.88  E-value=0.35  Score=35.95  Aligned_cols=36  Identities=17%  Similarity=0.614  Sum_probs=29.0

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      ..+.+.+||++|+++++...+.++.|..++.-.+..
T Consensus        59 ~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~   94 (181)
T PLN00223         59 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            457899999999999998888888888777665553

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=81.85  E-value=0.73  Score=34.19  Aligned_cols=37  Identities=24%  Similarity=0.549  Sum_probs=28.2

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      +++.+.+.+||++|+++++.....++.+..++...+.
T Consensus        48 ~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   84 (183)
T cd04152          48 NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVD   84 (183)
T ss_pred             CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEE
Confidence            4467899999999999888777767777777665444

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01866 Rab2 Rab2 subfamily

Probab=81.67  E-value=0.53  Score=34.27  Aligned_cols=35  Identities=49%  Similarity=1.069  Sum_probs=24.8

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..++.+.+.+||++|+++|....+-++-+..++..
T Consensus        48 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866          48 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             ECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45677899999999998877766555555444443

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	208
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-41
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		7e-20
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		8e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-18
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-17
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		2e-17
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-17
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-17
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		3e-17
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		5e-17
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		6e-17
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		6e-17
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		7e-17
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-17
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-16
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-16
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-16
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-16
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-16
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-16
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-16
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-16
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-16
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-16
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		8e-16
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-15
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-15
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		3e-15
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-15
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		4e-15
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-15
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-15
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		4e-15
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		5e-15
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		7e-15
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		8e-15
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-15
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-14
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-14
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-14
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-14
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-14
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		6e-14
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		7e-14
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		8e-14
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		8e-14
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		1e-13
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-13
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-13
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-13
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-13
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		1e-13
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-13
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-13
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-13
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-13
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-13
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-13
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-13
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		4e-13
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		5e-13
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		6e-13
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		7e-13
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		7e-13
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		9e-13
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		9e-13
4fmc_F	117	Espg-Rab1 Complex Length = 117		9e-13
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		1e-12
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		1e-12
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-12
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-12
2bku_A	177	Kap95p:rangtp Complex Length = 177		2e-12
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-12
1byu_A	216	Canine Gdp-Ran Length = 216		2e-12
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-12
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-12
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-12
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-12
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-12
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-12
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-12
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		3e-12
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		5e-12
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		6e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-12
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-12
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		7e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-11
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		1e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-11
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		1e-11
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-11
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		1e-11
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-11
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-11
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-11
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-11
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		2e-11
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-11
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-11
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-11
1vg1_A	185	Gdp-bound Rab7 Length = 185		2e-11
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		2e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		2e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		2e-11
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		2e-11
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-11
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-11
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-11
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-11
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-11
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-11
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-11
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		4e-11
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-11
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		7e-11
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-11
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		9e-11
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-10
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-10
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-10
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-10
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-10
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		2e-10
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-10
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		2e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		2e-10
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-10
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-10
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-10
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-10
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		4e-10
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-10
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-10
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		5e-10
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-10
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		5e-10
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		6e-10
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		6e-10
3icq_B	171	Karyopherin Nuclear State Length = 171		6e-10
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		6e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		6e-10
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		6e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		6e-10
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		7e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		7e-10
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		7e-10
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		7e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		7e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		7e-10
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-10
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		7e-10
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		7e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		7e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		7e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		8e-10
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		8e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-10
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		8e-10
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		8e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		9e-10
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		9e-10
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		1e-09
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		1e-09
1mh1_A	186	Small G-Protein Length = 186		1e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		1e-09
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-09
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-09
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-09
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-09
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-09
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-09
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-09
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-09
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-09
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-09
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		2e-09
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		2e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-09
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		2e-09
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-09
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		2e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-09
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-09
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-09
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-09
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-09
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		3e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		4e-09
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-09
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		4e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-09
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		6e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		6e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		6e-09
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		7e-09
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		7e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		7e-09
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		7e-09
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		8e-09
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		9e-09
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		9e-09
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-08
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-08
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-08
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-08
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-08
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		1e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		1e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-08
2kb0_A	178	Cdc42(T35a) Length = 178		2e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-08
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-08
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		2e-08
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		2e-08
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-08
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-08
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-08
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		3e-08
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-08
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		4e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-08
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		4e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		4e-08
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		4e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		5e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		5e-08
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		5e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		1e-07
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-07
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-07
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-07
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-07
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		4e-07
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-07
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-07
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		6e-07
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-06
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-06
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-06
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		7e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-05
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		2e-05
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		1e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		1e-04
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		1e-04
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		1e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-04
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-04
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-04
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-04
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-04

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 93/117 (79%)
Query: 72  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP 131
           E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ KV  E G+IP
Sbjct: 52  EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIP 111
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
           T LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV+ +F+YL  K L +
Sbjct: 112 TALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 8/156 (5%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G  + ++ F+    ++F  ++   + V  K    E  GE+V+L +WDTAGQE F  IT  
Sbjct: 21  GKSSLLLRFAD---NTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITST 77
Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
           YYRG    ++ +     +SF     W  ++   C ++  +LV NK D  ++ VV  E+A 
Sbjct: 78  YYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAY 137
Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
             +  +G +L  TS KE++NV  +F      C++EL
Sbjct: 138 KFAGQMGIQLFETSAKENVNVEEMF-----NCITEL 168

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           F       + V       E  GE+V+L +WDTAGQE F +IT++YYR A A ++T+    
Sbjct: 51  FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110
Query: 110 RDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
            +SF     W  ++E     ++ TVLV NKIDL ++  V+ + A+  S A     + TS 
Sbjct: 111 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 170
Query: 169 KEDINVNSIFRYLTTKCLSELRQ 191
           KE  NV  +F  L  + +SE RQ
Sbjct: 171 KESDNVEKLFLDLACRLISEARQ 193

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K      E + V+L +WDTAGQE F  IT +YYRGA   +I +  
Sbjct: 32  DTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            DRDSF+    W  +++    E +  +LV NK DL+ + VV  +E   L+ + G + + T
Sbjct: 92  TDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIET 151
Query: 167 SVKEDINVNSIFR 179
           S K   NV   F 
Sbjct: 152 SAKNAYNVEQAFH 164

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 8/176 (4%)
Query: 11  VRLMLWDTAGQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
           +R +   +   + +D+I K    G     ++C++       D F  +    + +  K   
Sbjct: 4   LRTVSASSGNGKSYDSIMKILLIGDSGVGKSCLLV--RFVEDKFNPSFITTIGIDFKIKT 61
Query: 67  KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-EN 125
            +  G++V+L LWDTAGQE F  IT AYYRGA   ++ +   D  +F     W   V E+
Sbjct: 62  VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEH 121
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
              E   +LV NK D ++  VV  ++ + L++ LG   + +S K D NVN IF  L
Sbjct: 122 ANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 176

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D F  +    + +  K    +  G++V+L LWDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 30  DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDV 89
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D  +F     W   V E+   E   +LV NK D ++  VV  ++ + L++ LG   + +
Sbjct: 90  TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIES 148
Query: 167 SVKEDINVNSIFRYL 181
           S K D NVN IF  L
Sbjct: 149 SAKNDDNVNEIFFTL 163

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D+F +     + +  K    E +G+ ++L +WDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 29  DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 88
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            +  SF+   +W   + E+   ++  +++ NK D+ D+  V+ E  + L+   G + M T
Sbjct: 89  TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 148
Query: 167 SVKEDINVNSIF 178
           S K +INV + F
Sbjct: 149 SAKANINVENAF 160

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D+F +     + +  K    E +G+ ++L +WDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 31  DAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDI 90
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            +  SF+   +W   + E+   ++  +++ NK D+ D+  V+ E  + L+   G + M T
Sbjct: 91  TNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMET 150
Query: 167 SVKEDINVNSIF 178
           S K +INV + F
Sbjct: 151 SAKANINVENAF 162

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF  A    + +  K        + ++L +WDTAGQE +  IT AYYRGA   ++ +  
Sbjct: 45  DSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDI 104
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            +++SF A   W  +++    +    +LV NK DL D+ VV  E+   L+  LG      
Sbjct: 105 ANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEA 164
Query: 167 SVKEDINVNSIFRYLT 182
           S KE+INV  +F  L 
Sbjct: 165 SAKENINVKQVFERLV 180

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 80/164 (48%), Gaps = 7/164 (4%)
Query: 20  GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
           G  E+D + K    G     ++C++       D++  ++   + V  K    E +G+ ++
Sbjct: 18  GSPEYDYLFKLLLIGDSGVGKSCLLL--RFADDTYTESYISTIGVDFKIRTIELDGKTIK 75
Query: 76  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
           L +WDTAGQE F  IT +YYRGA   ++ +   D++SF     W  +++    E +  +L
Sbjct: 76  LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 135
Query: 135 VQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           V NK DL  + VV    A   + +LG   + TS K   NV   F
Sbjct: 136 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 84.0 bits (206), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D F  +    + +  K    +  G++V+L +WDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 26  DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDI 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D  +F     W   V E+   E   +LV NK D ++  VV  ++ + L++ LG   + +
Sbjct: 86  TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
           S K D NVN IF  L
Sbjct: 145 SAKNDDNVNEIFFTL 159

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D F  +    + +  K    +  G++V+L LWDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 26  DKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDV 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D  +F     W   V E+   E   +LV NK D  +  VV  ++ + L++ LG   + +
Sbjct: 86  TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
           S K D NVN IF  L
Sbjct: 145 SAKNDDNVNEIFFTL 159

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 23  EFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLML 78
           E+DA+ K    G     ++C++       D++  ++   + V  K    E +G+ ++L +
Sbjct: 2   EYDALFKLLLIGDSGVGKSCLLL--RFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 59
Query: 79  WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVLVQN 137
           WDTAGQE F  IT +YYRGA   ++ +   D++SF     W  +++    E +  +LV N
Sbjct: 60  WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGN 119
Query: 138 KIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           K DL  + VV    A   + +LG   + TS K   NV   F
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 56  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 115
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 116 TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 175
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 176 SAKNATNVEQSF 187

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 39  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 99  TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 159 SAKNATNVEQSF 170

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 29  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 88
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 89  TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 148
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 149 SAKNATNVEQSF 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 22  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 81
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 82  TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 141
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 142 SAKNATNVEQSF 153

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 39  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 98
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 99  TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLET 158
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 159 SAKNATNVEQSF 170

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D F  +    + +  K    +  G++V+L +WDTAGQE F  IT AYYRGA   ++ +  
Sbjct: 26  DKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDI 85
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D  +F     W   V E+   E   +LV NK D  +  VV  ++ + L++ LG   + +
Sbjct: 86  TDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETRVVTADQGEALAKELGIPFIES 144
Query: 167 SVKEDINVNSIFRYL 181
           S K D NVN IF  L
Sbjct: 145 SAKNDDNVNEIFFTL 159

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 32  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++S+     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 92  TDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLET 151
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 152 SAKNATNVEQAF 163

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 32  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 91
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++S+     W  +++    E +  +LV NK DL  + VV    A   + +LG   + T
Sbjct: 92  TDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLET 151
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 152 SAKNATNVEQAF 163

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF  A    + +  K        + ++L +WDTAGQE +  IT AYYRGA   ++ +  
Sbjct: 28  DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDI 87
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF A   W  +++    +   V LV NK D+ D+ VV+ E    L+  LG      
Sbjct: 88  TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEA 147
Query: 167 SVKEDINVNSIFRYL 181
           S K++INV   F  L
Sbjct: 148 SAKDNINVKQTFERL 162

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 48  DSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           D+F  A    + +  K +T+   E + V+L +WDTAGQE +  IT AYYRGA   ++ + 
Sbjct: 46  DTFTPAFVSTVGIDFKVKTVYRHE-KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 104
Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             + +SF A   W  +++    +    +LV NK D+ ++ VV  E+  LL+  LG     
Sbjct: 105 ITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFE 164
Query: 166 TSVKEDINVNSIFRYL 181
            S KE+I+V   F  L
Sbjct: 165 ASAKENISVRQAFERL 180

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
           +  +  + + +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W
Sbjct: 46  IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105
Query: 120 KMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
             ++ E    ++  +L+ NK+D   + VV  E+ + L++  G   M TS K  +NV+  F
Sbjct: 106 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
Query: 179 RYLTTKCLSELRQQ 192
               T    EL+++
Sbjct: 166 ----TAIAKELKRR 175

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 80.5 bits (197), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 35  AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
            ++C++   T  R  F+  H   + V     +   +G++++L +WDTAGQE F +IT++Y
Sbjct: 22  GKSCLLLQFTDKR--FQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 79
Query: 95  YRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
           YRGA   ++ +    RD+F    +W     ++    +  +L+ NK DL  +  V  EE +
Sbjct: 80  YRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGE 139
Query: 154 LLSRALGCRLMRTSVKEDINVNSIF 178
             +R  G   M TS K   NV   F
Sbjct: 140 AFAREHGLIFMETSAKTASNVEEAF 164

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 3/145 (2%)
Query: 35  AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY 94
            ++C++   T  R  F+  H   + V     +   +G++++L +WDTAGQE F +IT++Y
Sbjct: 33  GKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90
Query: 95  YRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
           YRGA   ++ +    R++F    SW     ++    +  +L+ NK DL  +  V  EE +
Sbjct: 91  YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 150
Query: 154 LLSRALGCRLMRTSVKEDINVNSIF 178
             +R  G   M TS K   NV   F
Sbjct: 151 AFAREHGLIFMETSAKTACNVEEAF 175

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 31  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 90
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            D++SF     W  +++    E +  +LV  K DL  + VV    A   + +LG   + T
Sbjct: 91  TDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLET 150
Query: 167 SVKEDINVNSIF 178
           S K   NV   F
Sbjct: 151 SAKNATNVEQSF 162

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   +RL LWDTAGQE F ++  +Y R + A V+ +  
Sbjct: 29  DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDI 88
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 89  TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 148
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 149 SAKAGYNVKQLFR 161

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    ++ FS    D++   +   + V  K    E +G+ V+L +WDTAGQE F  IT +
Sbjct: 20  GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 76
Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRG+   +I +   D++SF     W  +++      +  +LV NK DL D+ VV  + A
Sbjct: 77  YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
              + A     + TS  +  NV   F  +  +    + QQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   VRL LWDTAGQE F ++  +Y R +   V+ +  
Sbjct: 25  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 84
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  +  EE +  ++ L    + T
Sbjct: 85  TNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIET 144
Query: 167 SVKEDINVNSIFRYLTTKCL 186
           S K   NV  +FR + +  L
Sbjct: 145 SAKTGYNVKQLFRRVASALL 164

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 4/160 (2%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    ++ FS    D++   +   + V  K    E +G+ V+L +WDTAGQE F  IT +
Sbjct: 20  GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 76
Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRG+   +I +   D++SF     W  +++      +  +LV NK DL D+ VV  + A
Sbjct: 77  YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 136
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
              + A     + TS  +  NV   F  +  +    + QQ
Sbjct: 137 KEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQ 176

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 35  AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
            + CV   S + R   + F   H   ++ S         G+ V L +WDTAGQE F A+ 
Sbjct: 27  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 86
Query: 92  KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
             YYR +   ++ +   D DSF+   +W  ++    G EI   +V NKIDL  +  V+ +
Sbjct: 87  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 146
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
           EA+  + ++G +   TS K++  +  +F
Sbjct: 147 EAESYAESVGAKHYHTSAKQNKGIEELF 174

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   VRL LWDTAGQE F ++  +Y R +   V+ +  
Sbjct: 37  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 96
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF     W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 97  TNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 156
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 157 SAKAGYNVKQLFR 169

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF  A    + +  K        + ++L +WDTAG E +  IT AYYRGA   ++ +  
Sbjct: 31  DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDI 90
Query: 108 IDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF A   W  +++    +   V LV NK D  D+ VV+ E    L+  LG      
Sbjct: 91  TNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEA 150
Query: 167 SVKEDINVNSIFRYL 181
           S K++INV   F  L
Sbjct: 151 SAKDNINVKQTFERL 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 35  AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
            + CV   S + R   + F   H   ++ S         G+ V L +WDTAGQE F A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 92  KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
             YYR +   ++ +   D DSF+   +W  ++    G EI   +V NKIDL  +  V+ +
Sbjct: 73  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
           EA+  + ++G +   TS K++  +  +F
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   VRL LWDTAGQE F ++  +Y R +   V+ +  
Sbjct: 24  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDI 83
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 84  TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 143
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 144 SAKAGYNVKQLFR 156

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    ++ FS    D++   +   + V  K    E +G+ V+L +WDTAGQE F  IT +
Sbjct: 33  GKSCLLLRFSD---DTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSS 89
Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVEN-ECGEIPTVLVQNKIDLLDQSVVAPEEA 152
           YYRG+   +I +   D++SF     W  +++      +  +LV NK DL D+ VV  + A
Sbjct: 90  YYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVA 149
Query: 153 DLLSRALGCRLMRTSVKEDINVNSIF 178
              + A     + TS  +  NV   F
Sbjct: 150 KEFADANKMPFLETSALDSTNVEDAF 175

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
Query: 35  AQACVITFSTIDR---DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT 91
            + CV   S + R   + F   H   +  S         G+ V L +WDTAGQE F A+ 
Sbjct: 13  GEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72
Query: 92  KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPE 150
             YYR +   ++ +   D DSF+   +W  ++    G EI   +V NKIDL  +  V+ +
Sbjct: 73  PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQ 132
Query: 151 EADLLSRALGCRLMRTSVKEDINVNSIF 178
           EA+  + ++G +   TS K++  +  +F
Sbjct: 133 EAESYAESVGAKHYHTSAKQNKGIEELF 160

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGA A +I F   ++ SFE A  W  +++ +    +  
Sbjct: 61  VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVM 120
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
            L  NK DLLD   V  E+A   ++  G   M TS K   NV  IF
Sbjct: 121 ALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 2/144 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D+F  A    + V  K    E  G+++RL +WDTAGQE F++IT AYYR A+  ++ +  
Sbjct: 49  DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI 108
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDL-LDQSVVAPEEADLLSRALGCRLMR 165
             +++F+    W   ++    E    +LV NK+D   D+ +   +      +  G R   
Sbjct: 109 TKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 168
Query: 166 TSVKEDINVNSIFRYLTTKCLSEL 189
            S K++ NV+ IF  L    L ++
Sbjct: 169 ASAKDNFNVDEIFLKLVDDILKKM 192

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   +RL LWDTAG E F ++  +Y R + A V+ +  
Sbjct: 36  DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDI 95
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 96  TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 155
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 156 SAKAGYNVKQLFR 168

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   ++++F  A +W  +++ +    I  
Sbjct: 57  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 116
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++ +V  EEA   +       M TS K  +NVN +F  +  K
Sbjct: 117 ALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK 168

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   VRL LWDTAG E F ++  +Y R +   V+ +  
Sbjct: 29  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDI 88
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 89  TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 148
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 149 SAKAGYNVKQLFR 161

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+  +   + +         E   VRL LWDTAG E F ++  +Y R +   V+ +  
Sbjct: 39  DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDI 98
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
            + +SF+    W   V  E G ++  +LV NK DL D+  V+ EE +  ++ L    + T
Sbjct: 99  TNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIET 158
Query: 167 SVKEDINVNSIFR 179
           S K   NV  +FR
Sbjct: 159 SAKAGYNVKQLFR 171

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + D+F  A +W  +++ +    I  
Sbjct: 54  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL  +  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
           E +G  V L +WDTAGQE F ++   +YRGA  C++TFS  DR SFE   +W+ +     
Sbjct: 50  EVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYA 109
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
              +    P V++ NK+D  D+ V   E             + TS K+D NV   F    
Sbjct: 110 DVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAV 169
Query: 183 TKCLSELRQQE 193
            + L+   Q E
Sbjct: 170 RQVLAVEEQLE 180

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + D+F  A +W  +++ +    I  
Sbjct: 52  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 111
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL  +  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 112 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 163

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 56  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 4/119 (3%)
Query: 67  KEC--EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV- 123
           K+C  +    RL + DTAGQEEF A+ + Y R  +  ++ FS  DR SFE  + ++ ++ 
Sbjct: 44  KQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL 103
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
              +  E P +L+ NK DL  Q  V  EE   L+R L    M  S K  +NV+  F  L
Sbjct: 104 RVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL 162

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 55  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 114
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 115 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 166

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 58  MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 117
           + V     I E  G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    
Sbjct: 48  IGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLS 107
Query: 118 SWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
           SW     N        +L+ NK DL  Q  V  EEA   +   G   +  S K   NV  
Sbjct: 108 SWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167
Query: 177 IF 178
            F
Sbjct: 168 AF 169

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +D F+   S  +  S       C  E  + ++WDTAGQE F ++   YYRG+ A VI + 
Sbjct: 45  QDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYD 104
Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
              +DSF     W  +++    E I   +  NK DL D   V  ++A   + ++G  ++ 
Sbjct: 105 ITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVE 164
Query: 166 TSVKEDINVNSIFRYLT 182
           TS K  IN+  +F+ ++
Sbjct: 165 TSAKNAINIEELFQGIS 181

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 8/128 (6%)
Query: 69  CEGEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
            +G++V  M +WDTAGQE F ++  A+YRGA  CV+ +   +  SFE   SW+ +     
Sbjct: 52  VDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHA 111
Query: 124 -ENECGEIPTVLVQNKIDLLD-QSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRY 180
             N     P V++ NKID  + + +V+ + A  L+++LG   L  TS K  INV++ F  
Sbjct: 112 NVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEE 171
Query: 181 LTTKCLSE 188
           +    L +
Sbjct: 172 IARSALQQ 179

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 7/162 (4%)
Query: 29  KAYYRGAQACVITFSTIDR---DSFEAAHSWKMKVS-IKRTIKECEGEEVRLMLWDTAGQ 84
           K  + G QA   T S I R   D+F+  +   + +  + +T+   EG  VRL LWDTAGQ
Sbjct: 3   KLVFLGEQAVGKT-SIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGP-VRLQLWDTAGQ 60
Query: 85  EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD 143
           E F ++  +Y R + A ++ +   +R SFE    W   + NE G ++   LV NK DL D
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 144 QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              V  EE    ++        TS K   N+  +F+   +K 
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAG E++ AI   Y+R  +  ++ FS  + +S
Sbjct: 41  ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 93
Query: 113 FEAAHSWK---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           F A   ++   ++V+ E  +IP ++V NK DL ++  V  EEA   +   G + + TS K
Sbjct: 94  FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 153
Query: 170 EDINVNSIF----RYLTTKCLSE 188
              NV+ +F    R + TK +SE
Sbjct: 154 TRANVDKVFFDLMREIRTKKMSE 176

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 14/143 (9%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAG E++ AI   Y+R  +  ++ FS  + +S
Sbjct: 37  ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHES 89
Query: 113 FEAAHSWK---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           F A   ++   ++V+ E  +IP ++V NK DL ++  V  EEA   +   G + + TS K
Sbjct: 90  FTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAK 149
Query: 170 EDINVNSIF----RYLTTKCLSE 188
              NV+ +F    R + TK +SE
Sbjct: 150 TRANVDKVFFDLMREIRTKKMSE 172

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G  + ++ F+    D+F+   +  + V  K      +G + +L +WDTAGQE F  +T +
Sbjct: 27  GKSSLLLRFTD---DTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPS 83
Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKID 140
           YYRGAQ  ++ +    RD+F    +W  ++E  C   +I   LV NKID
Sbjct: 84  YYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN 125
           I E  G++++L +WDTAGQ  F A+T++YYRGA   ++ +    R ++    SW     N
Sbjct: 71  IIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARN 130
Query: 126 ECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
                   +L+ NK DL  Q  V  EEA   +   G   +  S K   NV   F
Sbjct: 131 LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-ENECGEIPT 132
           V+  +WDTAGQE F ++   YYR AQA ++ +      SF  A  W  ++ E    +I  
Sbjct: 52  VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIII 111
Query: 133 VLVQNKIDLLDQS---VVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
            LV NKID L +     VA EE + L+   G     TS K   NVN +F
Sbjct: 112 ALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAG E + ++   YYRGAQA ++ +   + D+F  A +W  +++ +    I  
Sbjct: 54  VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL  +  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 114 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 165

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 56  VKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 115
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +         TS K   NVN IF  +  K
Sbjct: 116 ALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKK 167

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPT 132
           V+  +WDTAG E + ++   YYRGAQA ++ +   + +SF  A +W  +++ +    I  
Sbjct: 54  VKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 113
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
            L  NK DL ++  V  +EA   +       M TS K  +NVN IF  +  K
Sbjct: 114 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 165

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           D++  ++   + V  K    E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +  
Sbjct: 21  DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDV 80
Query: 108 IDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDL 141
            D++SF     W  +++    E +  +LV NK DL
Sbjct: 81  TDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
           E +G  V + +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK +     
Sbjct: 52  EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 111
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYL 181
              E    P V++ NKID+ ++  V+ EEA    R  G      TS K+  NV + F   
Sbjct: 112 DVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
Query: 182 TTKCLS 187
             + L+
Sbjct: 171 VRRVLA 176

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
           E +G  V + +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK +     
Sbjct: 50  EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 109
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYL 181
              E    P V++ NKID+ ++  V+ EEA    R  G      TS K+  NV + F   
Sbjct: 110 DVKEPESFPFVILGNKIDISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
Query: 182 TTKCLS 187
             + L+
Sbjct: 169 VRRVLA 174

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RT+ E EG+ ++  +WDTAGQE + AIT AYYRGA   +I +      S+E  + W  ++
Sbjct: 53  RTL-EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            EN    +   L+ NK DL     V  EE+   ++        TS     NV+  F  L 
Sbjct: 112 RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171
Query: 183 TKCLSELRQQE---EEYSINGN 201
                ++ + +    + S NGN
Sbjct: 172 NTIYQKVSKHQMDLGDSSANGN 193

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 28  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 87
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 88  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 145
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 146 SNYNFEKPFLWLARKLIGD 164

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           + +G+ ++  +WDTAGQE + AIT AYYRGA   ++ +      ++E    W  ++ +  
Sbjct: 63  QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 122
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              I  +LV NK DL     V  +EA   +   G   + TS  +  NV + F+ + T+ 
Sbjct: 123 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           + +G+ ++  +WDTAGQE + AIT AYYRGA   ++ +      ++E    W  ++ +  
Sbjct: 72  QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 131
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              I  +LV NK DL     V  +EA   +   G   + TS  +  NV + F+ + T+ 
Sbjct: 132 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 40  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 100 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 157
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 158 SNYNFEKPFLWLARKLIGD 176

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 22  EEFDAITKAYYRG----AQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRL 76
           E++D + K    G     + CV+  F T    +F       + V       E +G+ V+L
Sbjct: 24  EQYDFLFKLVLVGDASVGKTCVVQRFKT---GAFSERQGSTIGVDFTMKTLEIQGKRVKL 80
Query: 77  MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLV 135
            +WDTAGQE F  IT++YYR A   ++ +    R SF +   W   V    G  I  +L+
Sbjct: 81  QIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLI 140
Query: 136 QNKIDLLDQSVVAPEEADLLSRALGCR-LMRTSVKEDINVNSIFRYLTTKCL 186
            NK DL +   V+  EA  L+        + TS K+  NV   F  + T+ +
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 3/169 (1%)
Query: 20  GQEEFDAITKAYYRGAQACVIT--FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLM 77
           G +E+D + K    G      +   S   R+ F       + V       + +G+ ++  
Sbjct: 1   GSDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 60
Query: 78  LWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQ 136
           +WDTAG E + AIT AYYRGA   ++ +      ++E    W  ++ +     I  +LV 
Sbjct: 61  IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 137 NKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
           NK DL     V  +EA   +   G   + TS  +  NV + F+ + T+ 
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAGQE++  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 49  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCLSELRQQEEEYS 197
           V  +F   T   L   R +++  S
Sbjct: 169 VREVFEMATRAALQARRGKKKSGS 192

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 3/155 (1%)
Query: 42  FSTIDRDSFEAAHSWKMKVSIK-RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA 100
            S   RD F       + V    ++I+    + ++  +WDTAGQE + AIT AYYRGA  
Sbjct: 24  LSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVG 83
Query: 101 CVITFSTIDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL 159
            ++ +    ++SFE    W  ++ +N    I  +LV NK DL    V+   +A   ++  
Sbjct: 84  ALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKE 143
Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
               + TS  E  NV   F  L  +  + +RQ+++
Sbjct: 144 KLAFIETSALEATNVELAFHQLLNEIYN-VRQKKQ 177

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---- 123
           E +G  V + +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK +     
Sbjct: 54  EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYA 113
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIF 178
              E    P V++ NK D+ ++  V+ EEA    +  G      TS K+  NV + F
Sbjct: 114 DVKEPESFPFVILGNKTDIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 49  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
           V  +F   T   L   R +++
Sbjct: 169 VREVFEMATRAALQARRGKKK 189

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA-AHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 47  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
           V  +F   T   L   R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 50  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 109
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
           V  +F   T   L   R +++
Sbjct: 170 VREVFEMATRAALQARRGKKK 190

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 58  MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH 117
           + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F    R +++   
Sbjct: 48  LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVP 107
Query: 118 SWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K + N    
Sbjct: 108 NWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKP 165
Query: 178 FRYLTTKCLSE 188
           F +L  K + +
Sbjct: 166 FLWLARKLIGD 176

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 47  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
           V  +F   T   L   R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+   +  +  S      + + E  + ++WDTAGQE F A+   YYRG+ A +I +  
Sbjct: 28  DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDI 87
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
              ++F    +W  ++ ++    I   +  NK DL D   V   +A   + ++    + T
Sbjct: 88  TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 147
Query: 167 SVKEDINVNSIF 178
           S K  IN+N +F
Sbjct: 148 SAKNAININELF 159

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 14/141 (9%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 47  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCLSELRQQEE 194
           V  +F   T   L   R +++
Sbjct: 167 VREVFEMATRAALQARRGKKK 187

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAG E+F  +   YY  AQ  +I F    
Sbjct: 31  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 90
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 91  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 148
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 149 SNYNFEKPFLWLARKLIGD 167

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAG E+F  +   YY  AQ  +I F    
Sbjct: 37  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 96
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 97  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 154
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 155 SNYNFEKPFLWLARKLIGD 173

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           FE  +   + V +   +       ++  +WDTAG E+F  +   YY  AQ  +I F    
Sbjct: 35  FEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTS 94
Query: 110 RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           R +++   +W   +   C  IP VL  NK+D+ D+ V A  ++ +  R    +    S K
Sbjct: 95  RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAK 152
Query: 170 EDINVNSIFRYLTTKCLSE 188
            + N    F +L  K + +
Sbjct: 153 SNYNFEKPFLWLARKLIGD 171

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 42  FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC 101
            S   R+ F       + V       + +G+ ++  +WDTAG E + AIT AYYRGA   
Sbjct: 46  LSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105
Query: 102 VITFSTIDRDSFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160
           ++ +      ++E    W  ++ +     I  +LV NK DL     V  +EA   +   G
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNG 165
Query: 161 CRLMRTSVKEDINVNSIFRYLTTKC 185
              + TS  +  NV + F+ + T+ 
Sbjct: 166 LSFIETSALDSTNVEAAFQTILTEI 190

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
           V + +WDTAGQE F ++  A+YRGA  CV+ F     ++F+   SW+          +  
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
             P V++ NKIDL ++ V                   TS KE INV   F+ +    L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +S
Sbjct: 52  ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 104
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
           F A   ++ ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K 
Sbjct: 105 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 164
Query: 171 DINVNSIF 178
             NV+ +F
Sbjct: 165 RANVDKVF 172

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +S
Sbjct: 40  ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
           F A   ++ ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K 
Sbjct: 93  FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 152
Query: 171 DINVNSIF 178
             NV+ +F
Sbjct: 153 RANVDKVF 160

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +S
Sbjct: 48  ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 100
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
           F A   ++ ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K 
Sbjct: 101 FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 160
Query: 171 DINVNSIF 178
             NV+ +F
Sbjct: 161 RANVDKVF 168

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
           V + +WDTAGQE F ++  A+YRGA  CV+ F     ++F+   SW+          +  
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
             P V++ NKIDL ++ V                   TS KE INV   F+ +    L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 51  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 110
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 111 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 170
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 171 VREVFEMATRAAL 183

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 12/121 (9%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENECG 128
           +G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E  H  W  ++++   
Sbjct: 50  DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAP 109
Query: 129 EIPTVLVQNKIDLLDQ----------SVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177
            IP VLV  K+DL D           + +   + + L + +G  R +  S K   NV ++
Sbjct: 110 GIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAV 169
Query: 178 F 178
           F
Sbjct: 170 F 170

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 49  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 108
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 109 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 168
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 169 VREVFEMATRAAL 181

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 48  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 107
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 168 VREVFEMATRAAL 180

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E E ++++  +WDTAG E + AIT AYYRGA   +I +      S+E  + W  ++
Sbjct: 50  RTI-EVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTEL 108
Query: 124 -ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            EN    +   L+ NK DL     V  +EA   +         TS     NV+  FR L 
Sbjct: 109 RENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELI 168
Query: 183 TKCLSELRQQEEEYS 197
                 + + + + S
Sbjct: 169 VAIFQMVSKHQVDLS 183

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 45  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 104
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 165 VREVFEMATRAAL 177

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 47  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 107 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 166
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 167 VREVFEMATRAAL 179

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 45  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 104
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 105 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 164
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 165 VREVFEMATRAAL 177

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 48  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 107
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 108 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 167
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 168 VREVFEMATRAAL 180

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           + +G+ ++  +WDTAG E + AIT AYYRGA   ++ +      ++E    W  ++ +  
Sbjct: 48  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              I   LV NK DL     V  +EA   +   G   + TS  +  NV + F+ + T+ 
Sbjct: 108 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +S
Sbjct: 38  ADSYRKKVVL-------DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMES 90
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
           F A   ++ ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K 
Sbjct: 91  FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150
Query: 171 DINVNSIF 178
             NV+ +F
Sbjct: 151 RANVDKVF 158

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           + +G+ ++  +WDTAG E + AIT AYYRGA   ++ +      ++E    W  ++ +  
Sbjct: 54  QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 113
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              I   LV NK DL     V  +EA   +   G   + TS  +  NV + F+ + T+ 
Sbjct: 114 DSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 1/127 (0%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
           + +G+ ++  +WDTAGQE +  IT AYYRGA   ++ +      ++E    W  ++ +  
Sbjct: 48  QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA 107
Query: 128 -GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
              I  +LV NK DL     V  +EA   +       + TS  +  NV   F+ + T+  
Sbjct: 108 DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 167
Query: 187 SELRQQE 193
             + Q++
Sbjct: 168 RIVSQKQ 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
           V + +WDTAGQE F ++  A+YRGA  CV+ F     ++F+   SW+          +  
Sbjct: 57  VTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
             P V++ NKID  ++ V                   TS KE INV   F+ +    L +
Sbjct: 117 NFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 9/179 (5%)
Query: 20  GQEEFDAITKAYYRGAQACVIT--FSTIDRDSFEAAHSWKMKVSIK---RTIKECEGEEV 74
           G E+++ + K    G      T   S   R+ F  +H  +  + ++   RT+       V
Sbjct: 18  GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEF--SHDSRTTIGVEFSTRTVM-LGTAAV 74
Query: 75  RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPTV 133
           +  +WDTAG E + AIT AYYRGA   ++ F      ++     W  ++ +     I  +
Sbjct: 75  KAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVM 134
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
           LV NK DL     V  EEA + +   G   + TS  +  NV   F  +  +  +++ +Q
Sbjct: 135 LVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 193

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC-GEIPT 132
           V+  +WDTAG E + AIT AYYRGA   ++ F      ++     W  ++ +     I  
Sbjct: 59  VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 118
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQ 192
           +LV NK DL     V  EEA + +   G   + TS  +  NV   F  +  +  +++ +Q
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 178

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 10/146 (6%)
Query: 63  KRTIKECEGE--------EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           KR +   +G         +V L LWDTAGQE F ++T A++R A   ++ F    + SF 
Sbjct: 65  KRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 124
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
              +W  +++    C     VL+ NK DL DQ  V   +A  L+   G     TS     
Sbjct: 125 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ 184
Query: 173 NVNSIFRYLTTKCLSELRQQEEEYSI 198
           NV      L    +  + Q  E+  I
Sbjct: 185 NVEKAVETLLDLIMKRMEQCVEKTQI 210

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           DSF+   +  +  S      + + E  + ++WDTAG E F A+   YYRG+ A +I +  
Sbjct: 29  DSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDI 88
Query: 108 IDRDSFEAAHSWKMKV-ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
              ++F    +W  ++ ++    I   +  NK DL D   V   +A   + ++    + T
Sbjct: 89  TKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVET 148
Query: 167 SVKEDINVNSIF 178
           S K  IN+N +F
Sbjct: 149 SAKNAININELF 160

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW----KMKVENE 126
           G+ + L LWDTAG E F ++T A++R A   ++ F   +  SF    +W    +M   +E
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 127 CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN 175
             +I  VL  NK DL DQ  V  EEA  L+   G     TS     N++
Sbjct: 127 NPDI--VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
           E + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      + ++    
Sbjct: 45  EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIF 178
           +  ++P +LV NK DL D+ VV  E+   L+R    C  + +S K  INVN IF
Sbjct: 105 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
           E + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      + ++    
Sbjct: 47  EVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 106
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIF 178
           +  ++P +LV NK DL D+ VV  E+   L+R    C  + +S K  INVN IF
Sbjct: 107 DTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK-----MKVENECG 128
           V + +WDTAG E F ++  A+YRGA  CV+ F     ++F+   SW+          +  
Sbjct: 57  VTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE 188
             P V++ NKIDL ++ V                   TS KE INV   F+ +    L +
Sbjct: 117 NFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQ 176

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 53  AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS 112
           A S++ KV +       +GEEV++ + DTAG E++ AI   Y+R  +  +  FS  + +S
Sbjct: 40  ADSYRKKVVL-------DGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMES 92
Query: 113 FEAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE 170
           F A   ++ ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K 
Sbjct: 93  FAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKT 152
Query: 171 DINVNSIF 178
             NV+ +F
Sbjct: 153 RANVDKVF 160

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAG E++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 50  EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 109
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V PEE  D+ +R      M  S K    
Sbjct: 110 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 169
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 170 VREVFEMATRAAL 182

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 71/167 (42%), Gaps = 18/167 (10%)
Query: 34  GAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA 93
           G    +I FS   +D F A +   +  +    I E +G++V L LWDTAGQE++D     
Sbjct: 17  GKTCLLIVFS---KDQFPAVYVPTVFENYVADI-EVDGKQVELALWDTAGQEDYDRARPL 72
Query: 94  YYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGEIPTVLVQNKIDL----------- 141
            Y      ++ FS    DS E     W  +V++ C  +P +LV NK DL           
Sbjct: 73  SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELA 132
Query: 142 -LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCL 186
            + Q  V P E  D+ +R      M  S K    V  +F   T   L
Sbjct: 133 KMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 179

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 48  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V   +  D L+R+ G   + TS K    V+  F  L    + 
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
           E+R+ +E+
Sbjct: 163 EIRKHKEK 170

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 72  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-- 129
           +E  L L DTAGQ+E+  +  ++  G    V+ +S     SF+   S   K+    G+  
Sbjct: 70  DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTR 129
Query: 130 IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL 189
           +P VLV NK DL  +  V   E   L+ + G   M +S +E+     IF    TK + E+
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF----TKVIQEI 185
Query: 190 RQQEEEYS 197
            + E  Y 
Sbjct: 186 ARVENSYG 193

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 48  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V   +  D L+R+ G   + TS K    V+  F  L    + 
Sbjct: 108 EDVPMVLVGNKCDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEE 194
           E+R+ +E
Sbjct: 163 EIRKHKE 169

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 48  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V   +  D L+R+ G   + TS K    V+  F  L    + 
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
           E+R+ +E+
Sbjct: 163 EIRKHKEK 170

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 48  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 107
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V   +  D L+R+ G   + TS K    V+  F  L    + 
Sbjct: 108 EDVPMVLVGNKSDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 162
Query: 188 ELRQQEEE 195
           E+R+ +E+
Sbjct: 163 EIRKHKEK 170

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G+ V L LWDTAGQE++  +    YRGA   V+ FS I + S+E     W  ++     
Sbjct: 53  DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112
Query: 129 EIPTVLVQNKIDLLDQ--------SVVAPEEADLLSRALG-CRLMRTSVKEDINVNSIFR 179
            +P VLV  K+DL D         +V+   + + L + +G    +  S K   NV ++F 
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172
Query: 180 YLTTKCLSELRQQE 193
                 L   R++E
Sbjct: 173 TAIKVVLQPPRRKE 186

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E  A  W  ++ +   
Sbjct: 50  DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAP 109
Query: 129 EIPTVLVQNKIDLLD 143
            +P +LV  K+DL D
Sbjct: 110 GVPIILVGTKLDLRD 124

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 68  ECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW--KMKVE 124
           + +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF +  +W  + K  
Sbjct: 63  DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQH 122
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---EDINVNSIFRYL 181
               +IP +LV NK DL     V  + A   +      L  TS K   ++ +V +IF  L
Sbjct: 123 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 182
Query: 182 TTKCLSE 188
             K  S 
Sbjct: 183 AHKLKSH 189

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 58  MKVSIKRTIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAA 116
           + V  +    + +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF + 
Sbjct: 62  IGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSL 121
Query: 117 HSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---ED 171
            +W  + K      +IP +LV NK DL     V  + A   +      L  TS K   ++
Sbjct: 122 PAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDN 181
Query: 172 INVNSIFRYLTTKCLSE 188
            +V +IF  L  K  S 
Sbjct: 182 DHVEAIFXTLAHKLKSH 198

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
           E + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      + ++    
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIF 178
           +  ++P +LV NK DL D+ VV  E+   L+R    C  + +S K  INVN IF
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
           E + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      + ++    
Sbjct: 45  EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIF 178
           +  ++P +LV NK DL D+ VV  E+   L+R    C  + +S K  INVN IF
Sbjct: 105 DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIF 158

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63  KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           KR + + +G +        V L LWDTAG E F ++T A++R A   ++ F    + SF 
Sbjct: 51  KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
              +W  +++    C     VL+ NK DL DQ  V   +A  L+   G     TS     
Sbjct: 111 NVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
           NV
Sbjct: 171 NV 172

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63  KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           KR + + +G +        V L LWDTAG E F ++T A++R A   ++ F    + SF 
Sbjct: 51  KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
              +W  +++    C     VL+ NK DL DQ  V   +A  L+   G     TS     
Sbjct: 111 NVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
           NV
Sbjct: 171 NV 172

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAGRTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
           E+RQ +
Sbjct: 162 EIRQHK 167

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 65  DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS 124
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V   +  D L+R+ G   + TS K    V+  F  L    + 
Sbjct: 125 EDVPMVLVGNKCDLPSRTVDTKQAQD-LARSYGIPFIETSAKTRQGVDDAFYTL----VR 179
Query: 188 ELRQQEEE 195
           E+R+ +E+
Sbjct: 180 EIRKHKEK 187

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE 129
           +GE   L LWDTAGQE F +I K+Y+R A   ++ +      SF     W   +E+   E
Sbjct: 73  DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE 132
Query: 130 -IPTVLVQNKIDLLD------QSVVAPEEADLLSRALGCRLMRTSVKEDINV 174
            +P +LV NK D+ D      Q  V     + L+   G     TS K+  N+
Sbjct: 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI 184

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63  KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           KR + + +G +        V L LWDTAG E F ++T A++R A   ++ F    + SF 
Sbjct: 51  KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
              +W  +++    C     VL+ NK DL DQ  V   +A  L+   G     TS     
Sbjct: 111 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
           NV
Sbjct: 171 NV 172

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 54  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 113
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 114 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 168
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 169 EIRQH 173

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
           E++  +WDTAG E+F  +   YY  AQ  +I F    R +++   +W   +   C  IP 
Sbjct: 52  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 111
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           VL  NK+D+ ++ V A  +     R    +    S K + N    F +L  K
Sbjct: 112 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 161

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
           E++  +WDTAG E+F  +   YY  AQ  +I F    R +++   +W   +   C  IP 
Sbjct: 53  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 112
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           VL  NK+D+ ++ V A  +     R    +    S K + N    F +L  K
Sbjct: 113 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 162

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
           E+RQ +
Sbjct: 162 EIRQHK 167

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
            G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E  +  W  ++++   
Sbjct: 52  NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP 111
Query: 129 EIPTVLVQNKIDLLD 143
            +P VLV  K+DL D
Sbjct: 112 GVPIVLVGTKLDLRD 126

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 53  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 112
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 113 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 167
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 168 EIRQH 172

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
           E+RQ +
Sbjct: 162 EIRQHK 167

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
           E+RQ +
Sbjct: 162 EIRQHK 167

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 52  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 167 EIRQH 171

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 52  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 167 EIRQH 171

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 63  KRTIKECEGEE--------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 114
           KR + + +G +        V L LWDTAG E F ++T A++R A   ++ F    + SF 
Sbjct: 51  KRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFL 110
Query: 115 AAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI 172
              +W  +++    C     VL+ NK DL DQ  V   +A  L+   G     TS     
Sbjct: 111 NVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQ 170
Query: 173 NV 174
           NV
Sbjct: 171 NV 172

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKSDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
           E++  +WDTAG E+F  +   YY  AQ  +I F    R +++   +W   +   C  IP 
Sbjct: 60  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           VL  NK+D+ ++ V A  +     R    +    S K + N    F +L  K
Sbjct: 120 VLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK 169

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
           F+   +  + V     I    G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    
Sbjct: 35  FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94
Query: 110 RDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV 168
           R+++ A  +W         + I  +L  NK DL     V   EA   ++      + TS 
Sbjct: 95  RETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154
Query: 169 KEDINVNSIFRYLTTKCLSELRQQE 193
               NV   F     K L+++   E
Sbjct: 155 LTGENVEEAFVQCARKILNKIESGE 179

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E RQ 
Sbjct: 162 EFRQH 166

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 51  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 110
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 111 NTPIILVGTKLDLRD 125

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 49  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP 108
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 109 NTPIILVGTKLDLRD 123

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV N+ DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNRCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 67  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V  EE  D+ +R      +  S K    
Sbjct: 127 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 187 VREVFEMATRAGL 199

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DT GQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 74  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 74  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 48  DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST 107
           + F+   +  + V     +    G+ V+L +WDTAGQE F ++T++YYRGA   ++ +  
Sbjct: 48  NKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDI 107
Query: 108 IDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
             R+++ +  +W           I  +L  NK DL  +  V   EA   ++      + T
Sbjct: 108 TSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLET 167
Query: 167 SVKEDINVNSIF 178
           S     NV   F
Sbjct: 168 SALTGENVEEAF 179

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 54  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 113
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 114 NTPIILVGTKLDLRD 128

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 66  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 125
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 126 NTPIILVGTKLDLRD 140

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 47  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 106
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
           C  +P +LV NK DL            + Q  V  EE  D+ +R      +  S K    
Sbjct: 107 CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 166
Query: 174 VNSIFRYLT 182
           V  +F   T
Sbjct: 167 VREVFEMAT 175

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 57  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 116
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 117 NTPIILVGTKLDLRD 131

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 67  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL 141
           C  +P +LV NK DL
Sbjct: 127 CPNVPIILVANKKDL 141

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 14/140 (10%)
Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVEN 125
            +G   RL + DTAGQEEF A+ + Y R     ++ F+  DR SF       +  ++V++
Sbjct: 52  VDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD 111
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
              + P VLV NK DL  Q  V   EA     +        S K  +NV+  F  L  + 
Sbjct: 112 R-DDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL-VRA 169
Query: 186 LSELRQQEEEYSINGNGLPP 205
           + + ++QE         LPP
Sbjct: 170 VRKYQEQE---------LPP 180

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 48  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 108 HTPILLVGTKLDLRD 122

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG+EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 HTPILLVGTKLDLRD 121

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DT GQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 48  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 107
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 108 HTPILLVGTKLDLRD 122

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTA QEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKXDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQE 193
           E+RQ +
Sbjct: 162 EIRQHK 167

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE  A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTA QEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKXDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 20  GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
           G E +D + K    G     ++C++         F+   +  + V     I    G+ V+
Sbjct: 4   GSETYDFLFKFLVIGNAGTGKSCLL--HQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 61
Query: 76  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
           L +WDTAGQE F ++T++YYRGA   ++ +    R+++ A  +W         + I  +L
Sbjct: 62  LQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 121
Query: 135 VQNKIDL 141
             NK DL
Sbjct: 122 CGNKKDL 128

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 52  DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 111
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 112 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 166
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 167 EIRQH 171

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
             G+E  L L DTAGQ+E+    + Y       ++ +S     SFE       K+ +  G
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
             +IP +LV NK DL  + V++ EE   L+ +     + +S KE+     +FR
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
             G+E  L L DTAGQ+E+    + Y       ++ +S     SFE       K+ +  G
Sbjct: 44  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 103
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
             +IP +LV NK DL  + V++ EE   L+ +     + +S KE+     +FR
Sbjct: 104 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 156

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAG EE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   + 
Sbjct: 47  DGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS 106
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++V + +  D L+R+ G   + TS K    V   F  L    + 
Sbjct: 107 DDVPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTL----VR 161
Query: 188 ELRQQ 192
           E+RQ 
Sbjct: 162 EIRQH 166

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
             G+E  L L DTAGQ+E+    + Y       ++ +S     SFE       K+ +  G
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 108
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
             +IP +LV NK DL  + V++ EE   L+ +     + +S KE+     +FR
Sbjct: 109 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
             G+E  L L DTAGQ+E+    + Y       ++ +S     SFE       K+ +  G
Sbjct: 47  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVG 106
Query: 129 --EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
             +IP +LV NK DL  + V++ EE   L+ +     + +S KE+     +FR
Sbjct: 107 KVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 159

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 56.6 bits (135), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 47  DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 NTPIILVGTKLDLRD 121

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 50  DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 109
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 110 NTPIILVGTKLDLRD 124

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 55  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 114
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 115 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 156

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 51  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 110
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 111 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 152

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 50  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 109
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 110 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 151

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 49  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 108
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 109 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 150

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SFE   + W  +V + C 
Sbjct: 74  DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP 133
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 134 NTPIILVGTKLDLRD 148

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 51  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 110
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 111 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 152

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 55  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 114
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 115 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 156

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 58  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 117
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 118 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 159

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           + EE  L LWDTAGQEE+D +    Y  +   ++ F+  +R SF+   + W+ ++++   
Sbjct: 66  KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 125
Query: 129 EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGC-RLMRTSVKEDINVNSIF 178
              TVLV  K+DL       V  +E D L + LGC   +  S    I +N +F
Sbjct: 126 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 178

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 50  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 109
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 110 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 151

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 52  GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 112 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 153

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           + EE  L LWDTAGQEE+D +    Y  +   ++ F+  +R SF+   + W+ ++++   
Sbjct: 67  KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID 126
Query: 129 EIPTVLVQNKIDLLDQSV--VAPEEADLLSRALGC-RLMRTSVKEDINVNSIF 178
              TVLV  K+DL       V  +E D L + LGC   +  S    I +N +F
Sbjct: 127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF 179

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWK 120
           R   E + +   L + DTAGQEEF A+ + Y R     +I +S  D+ SFE     H   
Sbjct: 56  RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLI 115
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFR 179
           ++V++     P +LV NK+DL+    V  ++   ++       + TS K+  +NV+  F 
Sbjct: 116 LRVKDRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174
Query: 180 YLTTKCLSELRQQ 192
            L    +  +RQQ
Sbjct: 175 DL----VRVIRQQ 183

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 73  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT 132
            ++  +WDTAGQE + +I   YYRGA   ++ F   + ++ + A +W  +++     I  
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYI-I 150
Query: 133 VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
           +LV NKID  ++  V   E    ++      ++TS K   N+ +IF  L
Sbjct: 151 ILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYML 198

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
           E + +   L + DTAGQEEF A+ + Y R     +I +S  D+ SFE     H   ++V+
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
           +     P +LV NK+DL+    V  ++   ++       + TS K+  +NV+  F  L  
Sbjct: 120 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 176
Query: 184 KCLSELRQQ 192
             +  +RQQ
Sbjct: 177 --VRVIRQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
           E + +   L + DTAGQEEF A+ + Y R     +I +S  D+ SFE     H   ++V+
Sbjct: 55  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 114
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
           +     P +LV NK+DL+    V  ++   ++       + TS K+  +NV+  F  L  
Sbjct: 115 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 171
Query: 184 KCLSELRQQ 192
             +  +RQQ
Sbjct: 172 --VRVIRQQ 178

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVE 124
           E + +   L + DTAGQEEF A+ + Y R     +I +S  D+ SFE     H   ++V+
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119
Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE-DINVNSIFRYLTT 183
           +     P +LV NK+DL+    V  ++   ++       + TS K+  +NV+  F  L  
Sbjct: 120 DRES-FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL-- 176
Query: 184 KCLSELRQQ 192
             +  +RQQ
Sbjct: 177 --VRVIRQQ 183

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 67  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 126
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEA-DLLSRALGCRLMRTSVKEDIN 173
              +P +LV NK DL            + Q  V  EE  D+ +R      +  S K    
Sbjct: 127 XPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEG 186
Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 187 VREVFEMATRAGL 199

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 20  GQEEFDAITKAYYRG----AQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVR 75
           G E +D + K    G     ++C++         F+   +  + V     I    G+ V+
Sbjct: 1   GSETYDFLFKFLVIGNAGTGKSCLL--HQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVK 58
Query: 76  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGE-IPTVL 134
           L +WDTAG E F ++T++YYRGA   ++ +    R+++ A  +W         + I  +L
Sbjct: 59  LQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIIL 118
Query: 135 VQNKIDL 141
             NK DL
Sbjct: 119 CGNKKDL 125

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           + + V L LWDTAGQE++D +    Y      +I FS +   S+E   + W  +V + C 
Sbjct: 47  DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 106
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 107 STPIILVGTKLDLRD 121

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           + + V L LWDTAGQE++D +    Y      +I FS +   S+E   + W  +V + C 
Sbjct: 53  DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 112
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 113 STPIILVGTKLDLRD 127

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SF    + W  +V + C 
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SF    + W  +V + C 
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           +G+ V L LWDTAG E++D +    Y      +I FS +   SF    + W  +V + C 
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP 258
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 259 NTPIILVGTKLDLRD 273

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENECG 128
           + + V L LWDTAGQE++D +    Y      +I FS +   S+E   + W  +V + C 
Sbjct: 54  DSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCP 113
Query: 129 EIPTVLVQNKIDLLD 143
             P +LV  K+DL D
Sbjct: 114 STPIILVGTKLDLRD 128

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L DTAGQE++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAH-SWKMKVENE 126
           E +G  V L LWDTAGQE++D +    Y  +   +I FS    DS E     W  +V + 
Sbjct: 52  EVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHF 111
Query: 127 CGEIPTVLVQNKIDL 141
           C  +P +LV  K+DL
Sbjct: 112 CQGVPIILVGCKVDL 126

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENE 126
           + +G+ V L +WDTAGQ+++D +   +Y  A   ++ F     +SF+   + W  +V + 
Sbjct: 76  QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135
Query: 127 CGEIPTVLVQNKIDLL-DQSVV 147
           C ++P ++V  K DL  D+S+V
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLV 157

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAG E++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 48  GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 107
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 149

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 2/113 (1%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--EN 125
           E +     L + DTAG E+F ++   Y +  Q  ++ +S +++ SF+     + ++    
Sbjct: 45  EVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK 104
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
              ++P +LV NK+DL  +  V+  E   L+   GC  M TS K    V+ +F
Sbjct: 105 RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           GE   L L+DTAG E++D +    Y      ++ FS +   SFE     W  ++ + C +
Sbjct: 52  GEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK 111
Query: 130 IPTVLVQNKIDLLD------------QSVVAPEEADLLSRAL 159
            P +LV  +IDL D            Q  + PE A+ L+R L
Sbjct: 112 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL 153

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWK 120
           R +  C+     L + DT G  +F A+ +       A ++ +S   R S E     +   
Sbjct: 41  RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQI 100
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
            +++ +   IP +LV NK D      V   EA+ L+R   C  M TS K + NV  +F+ 
Sbjct: 101 CEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160
Query: 181 L 181
           L
Sbjct: 161 L 161

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NEC 127
           +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SF   + ++ +++   + 
Sbjct: 65  DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS 124
Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
            ++P VLV NK DL  ++ V  ++A  L+++ G   + TS K    V   F  L    + 
Sbjct: 125 DDVPMVLVGNKCDLPTRT-VDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL----VR 179
Query: 188 ELRQ 191
           E+RQ
Sbjct: 180 EIRQ 183

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE---AAHSWK 120
           R +  C+     L + DT G  +F A+ +       A ++ FS   + S E     +   
Sbjct: 46  RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLI 105
Query: 121 MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
           ++++    +IP +LV NK D   Q  V   EA  +++   C  M TS K + NV  +F+ 
Sbjct: 106 VQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164
Query: 181 LTT 183
           L T
Sbjct: 165 LLT 167

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G  VRL L DTAGQ+EFD +    Y      ++ FS +   SF+  +  W  ++   C 
Sbjct: 64  DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP 123
Query: 129 EIPTVLVQNKIDL 141
           + P +LV  + DL
Sbjct: 124 KAPIILVGTQSDL 136

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYY--------------RG-----AQACVITFSTIDR 110
           +G+ V L LWDTAGQE++D +    Y              RG     A   +I FS +  
Sbjct: 49  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSP 108
Query: 111 DSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD 143
            SFE   + W  +V + C   P +LV  K+DL D
Sbjct: 109 ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 142

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 70  EGEEVRLMLWDTAGQEEFDAI--TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--N 125
           +GE+  L++ DT   E+ D     ++  +G  A VI +S  DR SFE+A   ++++   +
Sbjct: 48  DGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTH 107
Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +   +P +LV NK DL     V+ EE    +    C+ + TS     NV  +F
Sbjct: 108 QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52  AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
           A H++   + +       +GEE  LM++D   Q+    +         A VI +S  D+ 
Sbjct: 34  AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 86
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           SFE A   ++++    +  ++P +LV NK DL+    V+ +E    +    C+ + TS  
Sbjct: 87  SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146
Query: 170 EDINVNSIF 178
              NV ++F
Sbjct: 147 LHHNVQALF 155

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52  AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
           A H++   + +       +GEE  LM++D   Q+    +         A VI +S  D+ 
Sbjct: 39  AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 91
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           SFE A   ++++    +  ++P +LV NK DL+    V+ +E    +    C+ + TS  
Sbjct: 92  SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 151
Query: 170 EDINVNSIF 178
              NV ++F
Sbjct: 152 LHHNVQALF 160

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 52  AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
           A H++   + +       +GEE  LM++D   Q+    +         A VI +S  D+ 
Sbjct: 39  AGHTYDRSIVV-------DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKG 91
Query: 112 SFEAAHSWKMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK 169
           SFE A   ++++    +  ++P +LV NK DL+    V+ +E    +    C+ + TS  
Sbjct: 92  SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 151
Query: 170 EDINVNSIF 178
              NV ++F
Sbjct: 152 LHHNVQALF 160

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
           T  + +G  ++  +WDTAGQE+   +   YY GA   ++ F    R + +    W  + +
Sbjct: 52  TFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQ 111
Query: 125 NECG-EIPTVLVQNKIDLLDQSVVA 148
              G E P V+  NKID+ ++  ++
Sbjct: 112 AVVGNEAPIVVCANKIDIKNRQKIS 136

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 76  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIPTV 133
           L +W+  G+ E+  +     +   A +I +S  DR SFE A   ++++    +  +IP +
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           LV NK DL+    V+  E    +    C+ + TS     NV  +F
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 71  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECGE 129
           G++  L L+DTAGQE++D +    Y      +I FS ++  SF+     W  +++     
Sbjct: 63  GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 122
Query: 130 IPTVLVQNKIDLLD 143
           +P +L+  +IDL D
Sbjct: 123 VPFLLIGTQIDLRD 136

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM---KVENECGEI 130
           V L +WD  GQ     +   Y  GAQ  ++ +   +  SFE    W     KV  E    
Sbjct: 56  VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQ 115
Query: 131 PTV-LVQNKIDLLDQSVVAPEE 151
           P V LV NKIDL     + PE+
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEK 137

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIP 131
           + L +W+  G+ E+  +     +   A +I +S  DR SFE A   ++++    +  +IP
Sbjct: 59  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 116
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
            +LV NK DL+    V+  E    +    C+ + TS     NV  +F
Sbjct: 117 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E E + V L LWDT+G   +D +    Y  + A ++ F     ++ ++A   W+ ++ + 
Sbjct: 69  ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 128
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
           C     +L+  K DL              Q+ ++ E+   +++ LG    L  ++   + 
Sbjct: 129 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188
Query: 173 NVNSIFRYLTTKCLSE 188
           +++SIFR  +  CL++
Sbjct: 189 SIHSIFRTASMLCLNK 204

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIP 131
           + L +W+  G+ E+  +     +   A +I +S  DR SFE A   ++++    +  +IP
Sbjct: 90  ILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP 147
Query: 132 TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
            +LV NK DL+    V+  E    +    C+ + TS     NV  +F
Sbjct: 148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72  EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
           EEV L+++D   Q +     + +  +   A +I FS  DR SF        +++      
Sbjct: 70  EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 129
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           ++P +LV NK DL     V+ EE   L+  L C+ + TS     N   +F
Sbjct: 130 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E E + V L LWDT+G   +D +    Y  + A ++ F     ++ ++A   W+ ++ + 
Sbjct: 52  ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 111
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
           C     +L+  K DL              Q+ ++ E+   +++ LG    L  ++   + 
Sbjct: 112 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 171
Query: 173 NVNSIFRYLTTKCLSE 188
           +++SIFR  +  CL++
Sbjct: 172 SIHSIFRTASMLCLNK 187

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-HSWKMKVENE 126
           E E + V L LWDT+G   +D +    Y  + A ++ F     ++ ++A   W+ ++ + 
Sbjct: 53  ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY 112
Query: 127 CGEIPTVLVQNKIDL------------LDQSVVAPEEADLLSRALGCR--LMRTSVKEDI 172
           C     +L+  K DL              Q+ ++ E+   +++ LG    L  ++   + 
Sbjct: 113 CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 172
Query: 173 NVNSIFRYLTTKCLSE 188
           +++SIFR  +  CL++
Sbjct: 173 SIHSIFRTASMLCLNK 188

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72  EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
           EEV L+++D   Q +     + +  +   A +I FS  DR SF        +++      
Sbjct: 49  EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 108
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           ++P +LV NK DL     V+ EE   L+  L C+ + TS     N   +F
Sbjct: 109 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 72  EEVRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHS--WKMKVENECG 128
           EEV L+++D   Q +     + +  +   A +I FS  DR SF        +++      
Sbjct: 59  EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHH 118
Query: 129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           ++P +LV NK DL     V+ EE   L+  L C+ + TS     N   +F
Sbjct: 119 DLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 28/176 (15%)
Query: 10  EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKE- 68
           EV+L ++  AG             G  A V+ F T           W+   +++ T +  
Sbjct: 28  EVKLAIFGRAGV------------GKSALVVRFLT-------KRFIWEYDPTLESTYRHQ 68
Query: 69  --CEGEEVRLMLWDTAGQEEFDAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVE- 124
              + E V + + DTAGQE  D I +  + R  +  V+ +   DR SFE     K  ++ 
Sbjct: 69  ATIDDEVVSMEILDTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 126
Query: 125 -NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV-KEDINVNSIF 178
             +   +  +LV NK DL     V+ EE + L+  L C     S    + N+  IF
Sbjct: 127 IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 76  LMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--ECGEIPTV 133
           L +W+  G+ E+  +     +   A +I +S  DR SFE A   ++++    +  +IP +
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 134 LVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           LV NK DL+    V+  E    +     + + TS     NV  +F
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	208
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	9e-45
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-20
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-35
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-15
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-35
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-15
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	2e-34
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	1e-14
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-34
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-15
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-34
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-15
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-34
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	3e-34
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-15
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	5e-34
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-14
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	7e-34
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-16
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	7e-34
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	5e-16
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	8e-34
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	1e-33
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	3e-14
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-33
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-15
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-33
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-15
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-33
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	6e-15
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-33
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-33
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-14
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-33
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-33
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-16
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	3e-33
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-15
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-33
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-15
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-33
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	6e-33
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-33
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	8e-33
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-14
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-33
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-33
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-15
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	9e-33
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-15
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-32
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-16
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-32
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-15
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-32
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	1e-15
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-32
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-15
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-32
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-16
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-32
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	9e-16
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-32
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-15
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-32
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-32
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-16
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-32
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	3e-32
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-15
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-32
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	3e-15
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-32
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-15
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	4e-32
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-15
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-32
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	3e-13
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	6e-32
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	7e-16
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-32
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-15
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	6e-32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-16
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-32
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-15
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	6e-32
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-15
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	8e-32
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	1e-15
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-31
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-15
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-31
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-16
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-31
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	4e-14
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-31
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-31
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	1e-15
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-30
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-30
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	7e-14
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-30
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-30
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-16
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-30
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-30
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	3e-15
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	5e-30
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	5e-30
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-29
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	4e-12
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-29
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	7e-15
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-27
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-26
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	2e-12
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-25
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	5e-11
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	4e-25
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-13
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-24
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	6e-13
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-24
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	4e-11
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-23
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-12
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	6e-23
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-11
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	1e-22
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-11
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-22
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-11
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-22
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-12
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-22
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	3e-11
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-22
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-10
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	1e-21
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	7e-11
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	1e-21
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-11
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	7e-21
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	3e-11
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	2e-20
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-11
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-18
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	3e-09
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-13
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-11
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-07
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	3e-05
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	8e-05
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-05
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	1e-04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-04
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	3e-04
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-04
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	4e-04
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-04
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	4e-04
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-04

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  145 bits (369), Expect = 9e-45
 Identities = 81/123 (65%), Positives = 95/123 (77%), Gaps = 1/123 (0%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R I +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW+ KV
Sbjct: 45  RQI-QVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV 103

Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
             E G+IPT LVQNKIDLLD S +  EEA+ L++ L  R  RTSVKED+NV+ +F+YL  
Sbjct: 104 VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163

Query: 184 KCL 186
           K L
Sbjct: 164 KHL 166

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 82.2 bits (204), Expect = 4e-20
 Identities = 41/50 (82%), Positives = 44/50 (88%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FST DR+SFEA  SW
Sbjct: 50 NDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  120 bits (304), Expect = 5e-35
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            +  R+I   +GEE  LM++D   Q+    +         A VI +S  D+ SFE A   
Sbjct: 36  HTYDRSI-VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL 94

Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           ++++       ++P +LV NK DL+    V+ +E    +    C+ + TS     NV ++
Sbjct: 95  RVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQAL 154

Query: 178 F 178
           F
Sbjct: 155 F 155

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            +GEE  LM++D   Q+    +         A VI +S  D+ SFE A   +++  ++R 
Sbjct: 44  VDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ--LRR- 100

Query: 66  IKECEGEEVRLML 78
            ++   ++V ++L
Sbjct: 101 ARQT--DDVPIIL 111

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  120 bits (304), Expect = 8e-35
 Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 7/140 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   +
Sbjct: 53  DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 111

Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + ++        +P +LV NK DL D+  V+ EEA   +       + TS K   NV+ +
Sbjct: 112 REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 171

Query: 178 FRYLTTKCLSELRQQEEEYS 197
           F  L    + E+R ++ E S
Sbjct: 172 FFDL----MREIRARKMEDS 187

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 68.7 bits (169), Expect = 8e-15
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   ++ +  I R 
Sbjct: 61  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 117

Query: 66  IKECEGEEVRLML 78
           +KE   E V  +L
Sbjct: 118 VKED--ENVPFLL 128

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  120 bits (304), Expect = 2e-34
 Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 7/148 (4%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   +
Sbjct: 49  DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 107

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + ++    E   +P +LV NK DL D+  V+ EEA   +       + TS K   NV+ +
Sbjct: 108 REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167

Query: 178 FRYLTTKCLSELRQQEEEYSINGNGLPP 205
           F  L    + E+R ++ E S   NG   
Sbjct: 168 FFDL----MREIRARKMEDSKEKNGKKK 191

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   ++ +  I R 
Sbjct: 57  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 113

Query: 66  IKECE 70
           +KE E
Sbjct: 114 VKEDE 118

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  119 bits (302), Expect = 2e-34
 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RT+ E  GE+V+L +WDTAGQE F  IT  YYRG    ++ +     +SF     W  ++
Sbjct: 49  RTV-EINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI 107

Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
              C ++  +LV NK D  ++ VV  E+A   +  +G +L  TS KE++NV  +F  +T 
Sbjct: 108 NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE 167

Query: 184 KCLSELRQQEEE 195
             L   +    +
Sbjct: 168 LVLRAKKDNLAK 179

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            GE+V+L +WDTAGQE F  IT  YYRG    ++ +     +SF     W
Sbjct: 54  NGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 103

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  119 bits (300), Expect = 2e-34
 Identities = 39/125 (31%), Positives = 65/125 (52%), Gaps = 3/125 (2%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   +
Sbjct: 39  DSYRKKV-VLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADF 97

Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + ++        +P +LV NK DL D+  V+ EEA   +       + TS K   NV+ +
Sbjct: 98  REQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKV 157

Query: 178 FRYLT 182
           F  L 
Sbjct: 158 FFDLM 162

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 68.3 bits (168), Expect = 7e-15
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 5/73 (6%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            +GEEV++ + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   ++ +  I R 
Sbjct: 47  LDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQ--ILR- 103

Query: 66  IKECEGEEVRLML 78
           +KE   E V  +L
Sbjct: 104 VKED--ENVPFLL 114

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  119 bits (301), Expect = 2e-34
 Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
              I   +G   RL + DTAGQEEF A+ + Y R     ++ F+  DR SF        +
Sbjct: 46  YTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQ 105

Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
           +    +  + P VLV NK DL  Q  V   EA     +        S K  +NV+  F  
Sbjct: 106 ILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF-- 163

Query: 181 LTTKCLSELRQQEEE 195
              + +  +R+ +E+
Sbjct: 164 --EQLVRAVRKYQEQ 176

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  118 bits (299), Expect = 3e-34
 Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 8/137 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            + ++ I  C+     L + DT G  +F A+ +       A ++ +S   R S E     
Sbjct: 38  DTYRQVI-SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPI 96

Query: 120 K---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
                +++ +   IP +LV NK D      V   EA+ L+R   C  M TS K + NV  
Sbjct: 97  YEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156

Query: 177 IFRYLTTKCLSELRQQE 193
           +F+ L    L+  +++ 
Sbjct: 157 LFQEL----LNLEKRRT 169

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 68.3 bits (168), Expect = 6e-15
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
           C+     L + DT G  +F A+ +       A ++ +S   R S E       +  I   
Sbjct: 46  CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEI 103

Query: 66  IKECE 70
             + E
Sbjct: 104 KGDVE 108

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  118 bits (298), Expect = 5e-34
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 7/140 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            +  + I    G+E  L L DTAGQ+E+    + Y       ++ +S     SFE     
Sbjct: 41  NTFTKLI-TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVI 99

Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
             K+ +  G  +IP +LV NK DL  + V++ EE   L+ +     + +S KE+     +
Sbjct: 100 HGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159

Query: 178 FRYLTTKCLSELRQQEEEYS 197
           FR +    + E  + +   S
Sbjct: 160 FRRI----ILEAEKMDGACS 175

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
             G+E  L L DTAGQ+E+    + Y       ++ +S     SFE       K  +   
Sbjct: 49  VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGK--LLD- 105

Query: 66  IKECE 70
           +    
Sbjct: 106 MVGKV 110

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  119 bits (300), Expect = 7e-34
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
             + + +G  ++  +WDTAGQE+   +   YY GA   ++ F    R + +    W  + 
Sbjct: 52  TFL-DDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF 110

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +   G   P V+  NKID+ ++  ++ +    + +         S K   N    F +L 
Sbjct: 111 QAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170

Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
                    + +   ++   L P
Sbjct: 171 RI----FTGRPDLIFVSNVNLEP 189

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 72.3 bits (178), Expect = 6e-16
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G  ++  +WDTAGQE+   +   YY GA   ++ F    R + +    W
Sbjct: 57  QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARW 106

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  119 bits (300), Expect = 7e-34
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
                     ++  +WDTAGQE+F  +   YY  AQ  +I F    R +++   +W   +
Sbjct: 55  LVF-HTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113

Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
              C  IP VL  NK+D+ D+ V    ++ +  R    +    S K + N    F +L  
Sbjct: 114 VRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 171

Query: 184 KCLSELRQQEEE 195
           K + +   +   
Sbjct: 172 KLIGDPNLEFVA 183

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 16/50 (32%), Positives = 26/50 (52%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
               ++  +WDTAGQE+F  +   YY  AQ  +I F    R +++   +W
Sbjct: 60  NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNW 109

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  118 bits (299), Expect = 8e-34
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +TI     + ++L +WDTAG E +  IT AYYRGA   ++ +   + +SF A   W  ++
Sbjct: 48  KTI-YRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI 106

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    +    +LV NK D+ D+ VV+ E    L+  LG      S K++INV   F  L 
Sbjct: 107 KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166

Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
                ++ +  +       G   
Sbjct: 167 DVICEKMSESLDTADPAVTGAKQ 189

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  118 bits (298), Expect = 1e-33
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            +  + +     +E  L L DTAGQ+E+  +  ++  G    V+ +S     SF+   S 
Sbjct: 59  NTYSKIV-TLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESL 117

Query: 120 KMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
             K+    G   +P VLV NK DL  +  V   E   L+ + G   M +S +E+     I
Sbjct: 118 YQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177

Query: 178 FRYLTTKCLSELRQQEEEYS 197
           F    TK + E+ + E  Y 
Sbjct: 178 F----TKVIQEIARVENSYG 193

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
              +E  L L DTAGQ+E+  +  ++  G    V+ +S     SF+   S   K  +   
Sbjct: 67  LGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQK--LHE- 123

Query: 66  IKECEGEEVRLML 78
                   V ++L
Sbjct: 124 GHGK--TRVPVVL 134

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  118 bits (297), Expect = 1e-33
 Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 2/141 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +   D++SF     W  ++
Sbjct: 56  RTI-ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 114

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    E +  +LV NK DL  + VV    A   + +LG   + TS K   NV   F  + 
Sbjct: 115 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 174

Query: 183 TKCLSELRQQEEEYSINGNGL 203
            +    +           + +
Sbjct: 175 AEIKKRMGPGATAGGAEKSNV 195

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +   D++SF     W
Sbjct: 61  DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  118 bits (297), Expect = 1e-33
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 2/143 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ E +G+ V+L +WDTAGQE F  IT +YYRG+   +I +   D++SF     W  ++
Sbjct: 48  KTV-ELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI 106

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +      +  +LV NK DL D+ VV  + A   + A     + TS  +  NV   F  + 
Sbjct: 107 DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA 166

Query: 183 TKCLSELRQQEEEYSINGNGLPP 205
            +    + QQ    +        
Sbjct: 167 RQIKESMSQQNLNETTQKKEDKG 189

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ V+L +WDTAGQE F  IT +YYRG+   +I +   D++SF     W
Sbjct: 53  DGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  116 bits (294), Expect = 2e-33
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
           R I   + EEV L+++D   Q +    +     +   A +I FS  DR SF       ++
Sbjct: 42  RRI-MVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR 100

Query: 123 VENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +       ++P +LV NK DL     V+ EE   L+  L C+ + TS     N   +F
Sbjct: 101 LRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 68.3 bits (168), Expect = 6e-15
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 6  CEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           + EEV L+++D   Q +    +     +   A +I FS  DR SF      
Sbjct: 46 VDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  117 bits (295), Expect = 2e-33
 Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 20/156 (12%)

Query: 43  STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQAC 101
                D++E            R I   + EEV L+++D   Q +    +     +   A 
Sbjct: 54  PENPEDTYE------------RRI-MVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100

Query: 102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL 159
           +I FS  DR SF       +++       ++P +LV NK DL     V+ EE   L+  L
Sbjct: 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTL 160

Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
            C+ + TS     N   +F         ++R +   
Sbjct: 161 SCKHIETSAALHHNTRELFEGAVR----QIRLRRGR 192

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  116 bits (293), Expect = 2e-33
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
            R   E +     L + DTAG E+F ++   Y +  Q  ++ +S +++ SF+     + +
Sbjct: 40  YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ 99

Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY 180
           +       ++P +LV NK+DL  +  V+  E   L+   GC  M TS K    V+ +F  
Sbjct: 100 IIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159

Query: 181 L 181
           +
Sbjct: 160 I 160

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            +     L + DTAG E+F ++   Y +  Q  ++ +S +++ SF+     + +  I R 
Sbjct: 46  VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQ--IIR- 102

Query: 66  IKECE 70
           +K  E
Sbjct: 103 VKRYE 107

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  116 bits (292), Expect = 3e-33
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 8/135 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H +
Sbjct: 38  DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQY 96

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + +++   +  ++P VLV NK D L    V   +A  L+R+ G   + TS K    V   
Sbjct: 97  REQIKRVKDSDDVPMVLVGNKSD-LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155

Query: 178 FRYLTTKCLSELRQQ 192
           F  L    + E+RQ 
Sbjct: 156 FYTL----VREIRQH 166

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  116 bits (294), Expect = 3e-33
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 2/138 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + I    G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+++ A  +W    
Sbjct: 50  KII-NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA 108

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                + I  +L  NK DL     V   EA   ++      + TS     NV   F    
Sbjct: 109 RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA 168

Query: 183 TKCLSELRQQEEEYSING 200
            K L+++   E +    G
Sbjct: 169 RKILNKIESGELDPERMG 186

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+++ A  +W
Sbjct: 55  GGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  117 bits (295), Expect = 3e-33
 Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 2/131 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ E  GE+V+L +WDTAGQE F +IT++YYR A A ++T+     +SF     W  ++
Sbjct: 66  KTV-EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI 124

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           E      + TVLV NKIDL ++  V+ + A+  S A     + TS KE  NV  +F  L 
Sbjct: 125 EQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184

Query: 183 TKCLSELRQQE 193
            + +SE RQ  
Sbjct: 185 CRLISEARQNT 195

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 70.8 bits (174), Expect = 1e-15
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            GE+V+L +WDTAGQE F +IT++YYR A A ++T+     +SF     W
Sbjct: 71  NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 120

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  115 bits (291), Expect = 5e-33
 Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + +    G+ V L +WDTAGQE F A+   YYR +   ++ +   D DSF+   +W  ++
Sbjct: 46  KKL-NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL 104

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
               G  I   +V NKIDL  +  V+ +EA+  + ++G +   TS K++  +  +F  L 
Sbjct: 105 RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC 164

Query: 183 TKCL 186
            + +
Sbjct: 165 KRMI 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 70.2 bits (173), Expect = 1e-15
 Identities = 20/50 (40%), Positives = 29/50 (58%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G+ V L +WDTAGQE F A+   YYR +   ++ +   D DSF+   +W
Sbjct: 51  GGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNW 100

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  116 bits (292), Expect = 6e-33
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+     + ++L +WDTAGQE +  IT AYYRGA   ++ +   +++SF A   W  ++
Sbjct: 62  KTV-YRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI 120

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    +    +LV NK DL D+ VV  E+   L+  LG      S KE+INV  +F  L 
Sbjct: 121 KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180

Query: 183 TKCLSELRQ 191
                ++ +
Sbjct: 181 DVICEKMNE 189

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  116 bits (293), Expect = 6e-33
 Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + +   +   V + +WDTAGQE F ++  A+YRGA  CV+ F     ++F+   SW+ + 
Sbjct: 48  KEV-MVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106

Query: 124 ENECGE-----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
             +         P V++ NKIDL ++ V                   TS KE INV   F
Sbjct: 107 LIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF 166

Query: 179 RYLTTKCLSELRQQEEE 195
           + +    L +  + E  
Sbjct: 167 QTIARNALKQETEVELY 183

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  115 bits (291), Expect = 7e-33
 Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E +G+ ++L +WDTAGQE F  IT AYYRGA   ++ +   +  SF+   +W   +
Sbjct: 48  RTI-ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 106

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           E      +  +++ NK D+ D+  V+ E  + L+   G + M TS K +INV + F  L 
Sbjct: 107 EEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA 166

Query: 183 TKCLSELRQQEEE 195
               +++ +  + 
Sbjct: 167 RDIKAKMDKNWKA 179

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  116 bits (292), Expect = 8e-33
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 9/145 (6%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            + ++ I  C+     L + DT G  +F A+ +       A ++ FS   + S E     
Sbjct: 43  DTYRQVI-SCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPI 101

Query: 120 K---MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
               ++++    +IP +LV NK D   Q  V   EA  +++   C  M TS K + NV  
Sbjct: 102 YKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKE 160

Query: 177 IFRYLTTKCLSELRQQEEEYSINGN 201
           +F+ L    L+   ++    +I+G 
Sbjct: 161 LFQEL----LTLETRRNMSLNIDGK 181

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
           C+     L + DT G  +F A+ +       A ++ FS   + S E          I + 
Sbjct: 51  CDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKL--IVQI 108

Query: 66  IKECE 70
               E
Sbjct: 109 KGSVE 113

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  115 bits (291), Expect = 8e-33
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H +
Sbjct: 39  DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHY 97

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + +++   +  ++P VLV NK D L    V  ++A  L+R+ G   + TS K    V+  
Sbjct: 98  REQIKRVKDSEDVPMVLVGNKCD-LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156

Query: 178 FRYLTTKCLSELRQQEEEYSINGNG 202
           F  L    + E+R+ +E+ S +G  
Sbjct: 157 FYTL----VREIRKHKEKMSKDGKK 177

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  116 bits (292), Expect = 9e-33
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 2/133 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+   E   VRL LWDTAG E F ++  +Y R +   V+ +   + +SF+    W   V
Sbjct: 56  KTM-YLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV 114

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
             E G  +  +LV NK DL D+  V+ EE +  ++ L    + TS K   NV  +FR + 
Sbjct: 115 RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174

Query: 183 TKCLSELRQQEEE 195
                    Q+  
Sbjct: 175 AALPGMESTQDRS 187

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           E   VRL LWDTAG E F ++  +Y R +   V+ +   + +SF+    W
Sbjct: 61  EDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 110

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  115 bits (290), Expect = 9e-33
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+   E   VRL LWDTAGQE F ++  +Y R +   V+ +   + +SF     W   V
Sbjct: 54  KTM-YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV 112

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
             E G  +  +LV NK DL D+  V+ EE +  ++ L    + TS K   NV  +FR + 
Sbjct: 113 RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172

Query: 183 TK 184
             
Sbjct: 173 AA 174

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           E   VRL LWDTAGQE F ++  +Y R +   V+ +   + +SF     W
Sbjct: 59  EDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  115 bits (291), Expect = 1e-32
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 2/124 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RTI E +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +   D++SF     W  ++
Sbjct: 73  RTI-ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI 131

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    E +  +LV NK DL  + VV    A   + +LG   + TS K   NV   F  + 
Sbjct: 132 DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA 191

Query: 183 TKCL 186
            +  
Sbjct: 192 AEIK 195

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ ++L +WDTAGQE F  IT +YYRGA   ++ +   D++SF     W
Sbjct: 78  DGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 127

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  114 bits (289), Expect = 1e-32
 Identities = 37/130 (28%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + + + +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W  ++
Sbjct: 51  KVL-DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                  +  +L+ NK+D   + VV  E+ + L++  G   M TS K  +NV+  F  + 
Sbjct: 110 HEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169

Query: 183 TKCLSELRQQ 192
            +      + 
Sbjct: 170 KELKRRSMKA 179

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 70.7 bits (174), Expect = 1e-15
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W
Sbjct: 56  DGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  115 bits (290), Expect = 1e-32
 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+  C  E  + ++WDTAGQE F ++   YYRG+ A VI +    +DSF     W  ++
Sbjct: 63  KTV-PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    E I   +  NK DL D   V  ++A   + ++G  ++ TS K  IN+  +F+ ++
Sbjct: 122 KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS 181

Query: 183 TK 184
            +
Sbjct: 182 RQ 183

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 20/50 (40%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
             E  + ++WDTAGQE F ++   YYRG+ A VI +    +DSF     W
Sbjct: 68  GNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKW 117

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  115 bits (291), Expect = 2e-32
 Identities = 39/140 (27%), Positives = 64/140 (45%), Gaps = 2/140 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RT+ E EG+ ++  +WDTAGQE + AIT AYYRGA   +I +      S+E  + W  ++
Sbjct: 53  RTL-EIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL 111

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                + +   L+ NK DL     V  EE+   ++        TS     NV+  F  L 
Sbjct: 112 RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171

Query: 183 TKCLSELRQQEEEYSINGNG 202
                ++ + + +   +   
Sbjct: 172 NTIYQKVSKHQMDLGDSSAN 191

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 71.3 bits (175), Expect = 1e-15
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           EG+ ++  +WDTAGQE + AIT AYYRGA   +I +      S+E  + W
Sbjct: 58  EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 107

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  114 bits (288), Expect = 2e-32
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 4/125 (3%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R I       V L +WD  GQ     +   Y  GAQ  ++ +   +  SFE    W   V
Sbjct: 46  RRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVV 105

Query: 124 ENECGE----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
           +    E        LV NKIDL     + PE+     +  G      S K   +V   F+
Sbjct: 106 KKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 165

Query: 180 YLTTK 184
            +  +
Sbjct: 166 KVAAE 170

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 11  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTIKECE 70
           V L +WD  GQ     +   Y  GAQ  ++ +   +  SFE    W   V   + + E  
Sbjct: 56  VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVV---KKVSEES 112

Query: 71  GEEVRLML 78
             +  + L
Sbjct: 113 ETQPLVAL 120

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  115 bits (289), Expect = 2e-32
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 2/142 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R+I + +G+ ++  +WDTAGQE +  IT AYYRGA   ++ +      ++E    W  ++
Sbjct: 45  RSI-QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 103

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            +     I  +LV NK DL     V  +EA   +       + TS  +  NV   F+ + 
Sbjct: 104 RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL 163

Query: 183 TKCLSELRQQEEEYSINGNGLP 204
           T+    + Q++       +  P
Sbjct: 164 TEIYRIVSQKQIADRAAHDESP 185

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 71.5 bits (176), Expect = 9e-16
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          +G+ ++  +WDTAGQE +  IT AYYRGA   ++ +      ++E    W
Sbjct: 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  114 bits (288), Expect = 2e-32
 Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +TI   +G + +L +WDTAGQE F  +T +YYRGAQ  ++ +    RD+F    +W  ++
Sbjct: 55  KTI-SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNEL 113

Query: 124 ENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
           E  C    I  +LV NKID  +   V   E    +R      +  S K    V   F  L
Sbjct: 114 ETYCTRNDIVNMLVGNKID-KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172

Query: 182 TTKCLSELRQQEEEYSINGNG 202
             K +      E E   +G  
Sbjct: 173 VEKIIQTPGLWESENQNSGPS 193

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G + +L +WDTAGQE F  +T +YYRGAQ  ++ +    RD+F    +W
Sbjct: 60  DGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 109

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  114 bits (287), Expect = 3e-32
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
                E + +   L + DTAGQEEF A+ + Y R     +I +S  D+ SFE    +   
Sbjct: 55  YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQL 114

Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED-INVNSIFR 179
           +    +    P +LV NK+DL+    V  ++   ++       + TS K+  +NV+  F 
Sbjct: 115 ILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174

Query: 180 YL 181
            L
Sbjct: 175 DL 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  114 bits (288), Expect = 3e-32
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 2/131 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R +    G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+++ +  +W    
Sbjct: 65  RVV-NVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA 123

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                  I  +L  NK DL  +  V   EA   ++      + TS     NV   F    
Sbjct: 124 RTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA 183

Query: 183 TKCLSELRQQE 193
              L+++   E
Sbjct: 184 RTILNKIDSGE 194

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 19/50 (38%), Positives = 34/50 (68%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+++ +  +W
Sbjct: 70  GGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  114 bits (287), Expect = 3e-32
 Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ +   +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SF   + +
Sbjct: 56  DSYRKQV-VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLY 114

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI 177
           + +++   +  ++P VLV NK D L    V  ++A  L+++ G   + TS K    V   
Sbjct: 115 REQIKRVKDSDDVPMVLVGNKCD-LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA 173

Query: 178 FRYLTTKCLSELRQQEEE 195
           F  L    + E+RQ   +
Sbjct: 174 FYTL----VREIRQYRMK 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  114 bits (287), Expect = 3e-32
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           RT+       V+  +WDTAG E + AIT AYYRGA   ++ F      ++     W  ++
Sbjct: 65  RTV-MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL 123

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            +     I  +LV NK DL     V  EEA + +   G   + TS  +  NV   F  + 
Sbjct: 124 YDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL 183

Query: 183 TKCLSELRQQ 192
            +  +++ +Q
Sbjct: 184 KEIFAKVSKQ 193

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 18/50 (36%), Positives = 25/50 (50%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
               V+  +WDTAG E + AIT AYYRGA   ++ F      ++     W
Sbjct: 70  GTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  114 bits (287), Expect = 3e-32
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+     + V+L +WDTAGQE +  IT AYYRGA   ++ +   + +SF A   W  ++
Sbjct: 63  KTV-YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI 121

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           +    +    +LV NK D+ ++ VV  E+  LL+  LG      S KE+I+V   F  L 
Sbjct: 122 KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181

Query: 183 TKCLSELRQ 191
                ++  
Sbjct: 182 DAICDKMSD 190

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
             + V+L +WDTAGQE +  IT AYYRGA   ++ +   + +SF A   W
Sbjct: 68  HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 117

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  114 bits (288), Expect = 4e-32
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 3/140 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ +  G++V+L LWDTAGQE F  IT AYYRGA   ++ +   D  +F     W   V
Sbjct: 60  KTV-DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                +    +LV NK D ++  VV  ++ + L++ LG   + +S K D NVN IF  L 
Sbjct: 119 NEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 177

Query: 183 TKCLSELRQQEEEYSINGNG 202
                ++   +     NG  
Sbjct: 178 KLIQEKIDSNKLVGVGNGKE 197

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 23/50 (46%), Positives = 30/50 (60%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G++V+L LWDTAGQE F  IT AYYRGA   ++ +   D  +F     W
Sbjct: 65  NGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  113 bits (285), Expect = 4e-32
 Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ + + E  + ++WDTAG E F A+   YYRG+ A +I +     ++F    +W  ++
Sbjct: 46  KTV-QYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL 104

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                  I   +  NK DL D   V   +A   + ++    + TS K  IN+N +F  ++
Sbjct: 105 RQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS 164

Query: 183 TK 184
            +
Sbjct: 165 RR 166

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           + E  + ++WDTAG E F A+   YYRG+ A +I +     ++F    +W
Sbjct: 51  QNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNW 100

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  113 bits (285), Expect = 4e-32
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 9/136 (6%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAIT--KAYYRGAQACVITFSTIDRDSFEAAHSWKM 121
           RT+   +GE+  L++ DT   E+ D     ++  +G  A VI +S  DR SFE+A   ++
Sbjct: 43  RTL-TVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRI 101

Query: 122 KVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
           ++        +P +LV NK DL     V+ EE    +    C+ + TS     NV  +F 
Sbjct: 102 QLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161

Query: 180 YLTTKCLSELRQQEEE 195
            +      +LR +  +
Sbjct: 162 GVVR----QLRLRRRD 173

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 5/67 (7%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAIT--KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIK 63
            +GE+  L++ DT   E+ D     ++  +G  A VI +S  DR SFE+A   +++  ++
Sbjct: 47  VDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ--LR 104

Query: 64  RTIKECE 70
           R   + +
Sbjct: 105 R-THQAD 110

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  113 bits (284), Expect = 6e-32
 Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R I E  G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    SW    
Sbjct: 55  RII-EVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 113

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            N        +L+ NK DL  Q  V  EEA   +   G   +  S K   NV   F    
Sbjct: 114 RNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 173

Query: 183 TK 184
            K
Sbjct: 174 KK 175

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    SW
Sbjct: 60  SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  113 bits (285), Expect = 6e-32
 Identities = 40/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R +   +G++++L +WDTAGQE F +IT++YYRGA   ++ +    R++F    SW    
Sbjct: 61  RMV-NIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA 119

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                  +  +L+ NK DL  +  V  EE +  +R  G   M TS K   NV   F    
Sbjct: 120 RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA 179

Query: 183 TKCLSELRQ 191
            +   +++Q
Sbjct: 180 KEIYRKIQQ 188

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 21/50 (42%), Positives = 35/50 (70%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G++++L +WDTAGQE F +IT++YYRGA   ++ +    R++F    SW
Sbjct: 66  DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  113 bits (285), Expect = 6e-32
 Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           R+I + +G+ ++  +WDTAG E + AIT AYYRGA   ++ +      ++E    W  ++
Sbjct: 69  RSI-QVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 127

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
            +     I  +LV NK DL     V  +EA   +   G   + TS  +  NV + F+ + 
Sbjct: 128 RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL 187

Query: 183 TK 184
           T+
Sbjct: 188 TE 189

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 71.5 bits (176), Expect = 8e-16
 Identities = 18/50 (36%), Positives = 29/50 (58%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ ++  +WDTAG E + AIT AYYRGA   ++ +      ++E    W
Sbjct: 74  DGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  113 bits (285), Expect = 6e-32
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN--EC 127
            G+ + L LWDTAG E F ++T A++R A   ++ F   +  SF    +W  +++     
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS 125

Query: 128 GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
                VL  NK DL DQ  V  EEA  L+   G     TS     N++     L    + 
Sbjct: 126 ENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185

Query: 188 ELRQQEEE 195
            + +  ++
Sbjct: 186 RMERSVDK 193

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 70.3 bits (173), Expect = 2e-15
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G+ + L LWDTAG E F ++T A++R A   ++ F   +  SF    +W
Sbjct: 66  RGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNW 115

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  114 bits (287), Expect = 6e-32
 Identities = 40/137 (29%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 67  KECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN- 125
              +  +V L LWDTAGQE F ++T A++R A   ++ F    + SF    +W  +++  
Sbjct: 77  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136

Query: 126 -ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
             C     VL+ NK DL DQ  V   +A  L+   G     TS     NV      L   
Sbjct: 137 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196

Query: 185 CLSELRQQEEEYSINGN 201
            +  + Q  E+  I   
Sbjct: 197 IMKRMEQCVEKTQIPDT 213

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 70.1 bits (172), Expect = 4e-15
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            +  +V L LWDTAGQE F ++T A++R A   ++ F    + SF    +W
Sbjct: 79  GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNW 129

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  113 bits (284), Expect = 8e-32
 Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+       V+  +WDTAGQE + ++   YYRGA A +I F   ++ SFE A  W  ++
Sbjct: 52  QTL-AVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL 110

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           + +    +   L  NK DLLD   V  E+A   ++  G   M TS K   NV  IF  + 
Sbjct: 111 QAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIA 170

Query: 183 TK 184
            +
Sbjct: 171 RR 172

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 21/50 (42%), Positives = 29/50 (58%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
               V+  +WDTAGQE + ++   YYRGA A +I F   ++ SFE A  W
Sbjct: 57  NDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKW 106

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  111 bits (281), Expect = 2e-31
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+   +   V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  ++
Sbjct: 46  QTV-CLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 104

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
           + +    I   L  NK DL ++  V  +EA   +       M TS K  +NVN IF  + 
Sbjct: 105 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA 164

Query: 183 TK 184
            K
Sbjct: 165 KK 166

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 19/50 (38%), Positives = 31/50 (62%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +   V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W
Sbjct: 51  DDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNW 100

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  112 bits (282), Expect = 2e-31
 Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 8/128 (6%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+   +GE   L LWDTAGQE F +I K+Y+R A   ++ +      SF     W   +
Sbjct: 68  KTL-IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126

Query: 124 ENECGE-IPTVLVQNKIDLLDQS------VVAPEEADLLSRALGCRLMRTSVKEDINVNS 176
           E+   E +P +LV NK D+ D +       V     + L+   G     TS K+  N+  
Sbjct: 127 EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE 186

Query: 177 IFRYLTTK 184
              +L  +
Sbjct: 187 AVLHLARE 194

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRTI 66
           +GE   L LWDTAGQE F +I K+Y+R A   ++ +      SF     W         I
Sbjct: 73  DGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW------VDMI 126

Query: 67  KECEGEEVRLML 78
           ++   E V +ML
Sbjct: 127 EDAAHETVPIML 138

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  111 bits (279), Expect = 3e-31
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 4/125 (3%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            S ++ + E + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      
Sbjct: 38  DSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNS 176
           + ++    +  ++P +LV NK DL D+ VV  E+   L+R    C  + +S K  INVN 
Sbjct: 97  REQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156

Query: 177 IFRYL 181
           IF  L
Sbjct: 157 IFYDL 161

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 66.4 bits (163), Expect = 4e-14
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            + ++  L + DTAG E+F A+   Y +  Q   + +S   + +F      + +  I R 
Sbjct: 46  VDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQ--ILR- 102

Query: 66  IKECE 70
           +K+ E
Sbjct: 103 VKDTE 107

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  111 bits (279), Expect = 3e-31
 Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 3/124 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ +  G++V+L +WDTAGQE F  IT AYYRGA   ++ +   D  +F     W   V
Sbjct: 43  KTV-DINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV 101

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT 182
                +    +LV NK D ++  VV  ++ + L++ LG   + +S K D NVN IF  L 
Sbjct: 102 NEHANDEAQLLLVGNKSD-METRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA 160

Query: 183 TKCL 186
               
Sbjct: 161 KLIQ 164

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  111 bits (280), Expect = 5e-31
 Identities = 42/125 (33%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ E +G+ V+L +WDTAGQE F  IT++YYR A   ++ +    R SF +   W   V
Sbjct: 69  KTL-EIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV 127

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL-MRTSVKEDINVNSIFRYL 181
               G  I  +L+ NK DL +   V+  EA  L+        + TS K+  NV   F  +
Sbjct: 128 RKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV 187

Query: 182 TTKCL 186
            T+ +
Sbjct: 188 ATELI 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 21/50 (42%), Positives = 31/50 (62%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ V+L +WDTAGQE F  IT++YYR A   ++ +    R SF +   W
Sbjct: 74  QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  109 bits (276), Expect = 1e-30
 Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 15/138 (10%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
           K+ I   +G+   L++ D  G  E       +     A V  FS  D  SF+  +++ ++
Sbjct: 57  KKEI-VVDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLR 110

Query: 123 VEN--ECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRALG-CRLMRTSVKEDINVNSI 177
           + +     E+P VLV  +  +   +  V+    A  LS  L  C    T     +NV  +
Sbjct: 111 LCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERV 170

Query: 178 FRYLTTKCLSELRQQEEE 195
           F+ +      ++    ++
Sbjct: 171 FQDVA----QKVVALRKK 184

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
            +G+   L++ D  G  E       +     A V  FS  D  SF+  +++ +++
Sbjct: 62  VDGQSYLLLIRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRL 111

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  109 bits (276), Expect = 1e-30
 Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 11/135 (8%)

Query: 63  KRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
                  + + V L + DTA  +      + Y   A A ++ +S   R SF+++ S+   
Sbjct: 59  SSEE-TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLEL 116

Query: 123 VENECGE----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSI 177
           +     E    IP +L+ NK+D+     V   E   L+   GC     S   D  +V  +
Sbjct: 117 LALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV 176

Query: 178 FRYLTTKCLSELRQQ 192
           F       + E R++
Sbjct: 177 FHEA----VREARRE 187

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 66.1 bits (162), Expect = 7e-14
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            + + V L + DTA  +      + Y   A A ++ +S   R SF+++ S+     +   
Sbjct: 64  VDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLEL--LALH 120

Query: 66  IKECEGEEVRLML 78
            KE +   +  +L
Sbjct: 121 AKETQ-RSIPALL 132

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  110 bits (276), Expect = 2e-30
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 3/128 (2%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           +T+ E  G+++RL +WDTAGQE F++IT AYYR A+  ++ +    +++F+    W   +
Sbjct: 66  KTV-ELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI 124

Query: 124 ENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRYL 181
           +    E    +LV NK+D      +  ++ +  ++ + G R    S K++ NV+ IF  L
Sbjct: 125 DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 184

Query: 182 TTKCLSEL 189
               L ++
Sbjct: 185 VDDILKKM 192

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 20/50 (40%), Positives = 34/50 (68%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
            G+++RL +WDTAGQE F++IT AYYR A+  ++ +    +++F+    W
Sbjct: 71  RGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  109 bits (274), Expect = 2e-30
 Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 7/120 (5%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE-----NECG 128
             + +WDTAGQE F ++  A+YRGA  CV+ +   +  SFE   SW+ +       N   
Sbjct: 58  ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPE 117

Query: 129 EIPTVLVQNKIDLLDQS-VVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTTKCL 186
             P V++ NKID  +   +V+ + A  L+++LG   L  TS K  INV++ F  +    L
Sbjct: 118 TFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 11  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
             + +WDTAGQE F ++  A+YRGA  CV+ +   +  SFE   SW+
Sbjct: 58  ATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWR 104

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  110 bits (276), Expect = 3e-30
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)

Query: 64  RTIKECEGEEVRLML---WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
           RT+   +GE   ++L   W+  G+ E+  +     +   A +I +S  DR SFE A   +
Sbjct: 78  RTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 134

Query: 121 MKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +++       +IP +LV NK DL+    V+  E    +    C+ + TS     NV  +F
Sbjct: 135 IQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194

Query: 179 RYLTTKCLSELRQQEEE 195
             +    + ++R + + 
Sbjct: 195 EGI----VRQVRLRRDS 207

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  109 bits (274), Expect = 3e-30
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK 122
           R + + +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF +  +W  +
Sbjct: 60  RAV-DIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE 118

Query: 123 VEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK---EDINVNSI 177
            +      +IP +LV NK DL     V  + A   +      L  TS K   ++ +V +I
Sbjct: 119 CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI 178

Query: 178 FRYLTTK 184
           F  L  K
Sbjct: 179 FMTLAHK 185

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 69.9 bits (172), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 7   EGEEVRLMLWDTAGQEEF-DAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +GE +++ LWDTAGQE F  ++ + YYR   A V  +   +  SF +  +W
Sbjct: 65  DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAW 115

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  109 bits (274), Expect = 5e-30
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 9/141 (6%)

Query: 64  RTIKECEGEEVRLMLW--DTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW-- 119
             +       V + L+  DTAG + +      Y+ G    ++ F     +SFE+  +W  
Sbjct: 62  APV-TIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE 120

Query: 120 --KMKVENECGEIPTVLVQNKIDLLDQ-SVVAPEEADLLSRALGCRLMRTSVKED-INVN 175
             K    +    +  VLV NK DL  Q   V  + A   +          S      + +
Sbjct: 121 LLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

Query: 176 SIFRYLTTKCLSELRQQEEEY 196
           + F  + T        +   +
Sbjct: 181 APFLSIATTFYRNYEDKVAAF 201

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 68.1 bits (167), Expect = 2e-14
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 5/74 (6%)

Query: 7   EGEEVRLMLW--DTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKR 64
               V + L+  DTAG + +      Y+ G    ++ F     +SFE+  +W   +   +
Sbjct: 67  PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELL---K 123

Query: 65  TIKECEGEEVRLML 78
           + +      +R +L
Sbjct: 124 SARPDRERPLRAVL 137

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  108 bits (272), Expect = 5e-30
 Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 8/130 (6%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + + E +G  V + +WDTAGQE F ++   +YRG+  C++TFS  D  SF+   +WK + 
Sbjct: 47  KDL-EVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105

Query: 124 EN-----ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSI 177
                  E    P V++ NKID + +  V+ EEA    R  G      TS K+  NV + 
Sbjct: 106 IYYADVKEPESFPFVILGNKID-ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA 164

Query: 178 FRYLTTKCLS 187
           F     + L+
Sbjct: 165 FEEAVRRVLA 174

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  107 bits (269), Expect = 2e-29
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 9/139 (6%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            + +      + E V + + DTAGQE+     + + R  +  V+ +   DR SFE     
Sbjct: 63  STYRHQA-TIDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPL 120

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED-INVNS 176
           K  ++   +   +  +LV NK DL     V+ EE + L+  L C     S      N+  
Sbjct: 121 KNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180

Query: 177 IFRYLTTKCLSELRQQEEE 195
           IF  L      E+R++   
Sbjct: 181 IFYEL----CREVRRRRMV 195

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVSIKRT 65
            + E V + + DTAGQE+     + + R  +  V+ +   DR SFE     K    +   
Sbjct: 71  IDDEVVSMEILDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNI--LDE- 126

Query: 66  IKECE 70
           IK+ +
Sbjct: 127 IKKPK 131

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  106 bits (267), Expect = 2e-29
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 13/141 (9%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
              K+ +   +G+   +++ + AG  +       +   A A +  FS  D +SF+A    
Sbjct: 41  EQYKKEM-LVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRL 94

Query: 120 KMKVEN----ECGEIPTVLV--QNKIDLLDQSVVAPEEA-DLLSRALGCRLMRTSVKEDI 172
             ++ +      G +   LV  Q++I      VV    A  L +    C    T     +
Sbjct: 95  HGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154

Query: 173 NVNSIFRYLTTKCLSELRQQE 193
           NV+ +F+ +  K ++  +QQ+
Sbjct: 155 NVDRVFQEVAQKVVTLRKQQQ 175

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  102 bits (257), Expect = 1e-27
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 2/142 (1%)

Query: 43  STIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV 102
           +  + +         + ++ +          ++  +WDTAGQE + +I   YYRGA   +
Sbjct: 62  NEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAI 121

Query: 103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCR 162
           + F   + ++ + A +W +           +LV NKID  ++  V   E    ++     
Sbjct: 122 VVFDISNSNTLDRAKTW-VNQLKISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLL 179

Query: 163 LMRTSVKEDINVNSIFRYLTTK 184
            ++TS K   N+ +IF  L  +
Sbjct: 180 FIQTSAKTGTNIKNIFYMLAEE 201

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 69.1 bits (169), Expect = 7e-15
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
               ++  +WDTAGQE + +I   YYRGA   ++ F   + ++ + A +W
Sbjct: 89  NLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTW 138

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  100 bits (252), Expect = 4e-27
 Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 64  RTIKECEGEEVRLML---WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 120
           RT+   +GE   ++L   W+  G+ E+  +     +   A +I +S  DR SFE A   +
Sbjct: 47  RTL-MVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELR 103

Query: 121 MKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
           +++       +IP +LV NK DL+    V+  E    +     + + TS     NV  +F
Sbjct: 104 IQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163

Query: 179 RYLTTKCLSELRQQEEEYSING 200
             +      ++R + +    N 
Sbjct: 164 EGIVR----QVRLRRDSKEKNE 181

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 99.3 bits (248), Expect = 2e-26
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKVENE 126
           + + EE  L LWDTAGQEE+D +    Y  +   ++ F+  +R SF+   + W+ ++++ 
Sbjct: 65  KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY 124

Query: 127 CGEIPTVLVQNKIDLLD--QSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFRYLTT 183
                TVLV  K+DL       V  +E D L + LGC   +  S    I +N +F     
Sbjct: 125 IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

Query: 184 KCLS 187
              S
Sbjct: 185 CIFS 188

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 62.4 bits (152), Expect = 2e-12
 Identities = 18/45 (40%), Positives = 27/45 (60%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           + EE  L LWDTAGQEE+D +    Y  +   ++ F+  +R SF+
Sbjct: 67  KNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  102 bits (255), Expect = 1e-25
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 3/144 (2%)

Query: 52  AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD 111
                K   +IK    + E +E     WD  GQE   A  + +   +   ++     D  
Sbjct: 76  LNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSR 132

Query: 112 SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED 171
           +    H W   +E   G+ P ++V NKID      +  ++ +    A+  R  R S K  
Sbjct: 133 TDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192

Query: 172 INVNSIFRYLTTKCLSELRQQEEE 195
             V SI + L +  L         
Sbjct: 193 DGVESIAKSLKSAVLHPDSIYGTP 216

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 60.4 bits (146), Expect = 5e-11
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           E +E     WD  GQE   A  + +   +   ++     D  +    H W
Sbjct: 94  ELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLL---DSRTDSNKHYW 140

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 95.2 bits (237), Expect = 4e-25
 Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
           + +       V+  +WDTAGQE F ++   YYR AQA ++ +      SF  A  W  ++
Sbjct: 43  QRV-TINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL 101

Query: 124 ENECGE-IPTVLVQNKIDLL---DQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
             +  + I   LV NKID L    +  VA EE + L+   G     TS K   NVN +F 
Sbjct: 102 HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161

Query: 180 YLTTK 184
            +  K
Sbjct: 162 GIGEK 166

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 64.0 bits (156), Expect = 3e-13
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
              V+  +WDTAGQE F ++   YYR AQA ++ +      SF  A  W
Sbjct: 48 NEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHW 97

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 20/139 (14%), Positives = 50/139 (35%), Gaps = 10/139 (7%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS-FEAAHSWKMKV 123
            I++    ++ L +WD AG+EEF +    +       +  +      +  +A   W   +
Sbjct: 47  QIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106

Query: 124 ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALG-----CRLMRTSVKEDINVN 175
           +      P +LV   +D+ D+        +    L    G           + +E   + 
Sbjct: 107 KARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166

Query: 176 SIFRYLTTKCLSELRQQEE 194
            + + +  + L   + +++
Sbjct: 167 KLRKTIINESL-NFKIRDQ 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 63.5 bits (155), Expect = 6e-13
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS-FEAAHSW 56
              ++ L +WD AG+EEF +    +       +  +      +  +A   W
Sbjct: 52  RKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPW 102

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 93.2 bits (232), Expect = 6e-24
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)

Query: 70  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENECG 128
           +G+ V L LWDTAGQE++  +    YRGA   V+ FS I + S+E     W  ++     
Sbjct: 53  DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP 112

Query: 129 EIPTVLVQNKIDLLD--------QSVVAPEEADLLSRALGC-RLMRTSVKEDINVNSIFR 179
            +P VLV  K+DL D         +V+   + + L + +G    +  S K   NV ++F 
Sbjct: 113 NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFD 172

Query: 180 YLTTKCLSELRQQE 193
                 L   R++E
Sbjct: 173 TAIKVVLQPPRRKE 186

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 21/45 (46%), Positives = 29/45 (64%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
          +G+ V L LWDTAGQE++  +    YRGA   V+ FS I + S+E
Sbjct: 53 DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYE 97

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMK 122
                  G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E  +  W  +
Sbjct: 46  SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE 105

Query: 123 VENECGEIPTVLVQNKIDLLD----------QSVVAPEEADLLSRALGCRL-MRTSVKED 171
           +++    +P VLV  K+DL D             +   + + L + +G    +  S K  
Sbjct: 106 LKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165

Query: 172 INVNSIF 178
            NV  +F
Sbjct: 166 ENVKGVF 172

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 61.2 bits (149), Expect = 4e-12
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           G  V L LWDTAGQE+++ +    YRGA   ++ FS I + S+E
Sbjct: 52 NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYE 96

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 90.6 bits (225), Expect = 6e-23
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKV 123
              E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V
Sbjct: 64  ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV 123

Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE 170
           ++ C  +P +LV NK DL              Q  V  EE   ++  +     +  S K 
Sbjct: 124 KHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKT 183

Query: 171 DINVNSIF 178
              V  +F
Sbjct: 184 KEGVREVF 191

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 3   NRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           +   +G++V L LWDTAGQE++D +    Y      ++ FS    DS E
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
                  G++  L L+DTAGQE++D +    Y      +I FS ++  SF+     W  +
Sbjct: 56  AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115

Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSVK 169
           ++     +P +L+  +IDL D            +  +  E+   L++ +G C  +  S  
Sbjct: 116 LKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175

Query: 170 EDINVNSIFRYLTTKCLS 187
               + ++F       L+
Sbjct: 176 TQKGLKTVFDEAIIAILT 193

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 58.7 bits (142), Expect = 4e-11
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 2   INRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           ++    G++  L L+DTAGQE++D +    Y      +I FS ++  SF+
Sbjct: 57  VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ 106

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 14/129 (10%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
                 +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + W  +
Sbjct: 68  SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPE 127

Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVK 169
           V + C   P +LV  K+DL D             + +   +   +++ +G  + +  S  
Sbjct: 128 VRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 187

Query: 170 EDINVNSIF 178
               + ++F
Sbjct: 188 TQRGLKTVF 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + 
Sbjct: 74  DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAK 123

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 14/134 (10%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           + +G+ V L +WDTAGQ+++D +   +Y  A   ++ F     +SF+   + W  +V + 
Sbjct: 76  QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHF 135

Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
           C ++P ++V  K DL                 V       ++R++G    +  S +   N
Sbjct: 136 CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDN 195

Query: 174 VNSIFRYLTTKCLS 187
           V+++F+      LS
Sbjct: 196 VHAVFQEAAEVALS 209

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 15/45 (33%), Positives = 27/45 (60%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           +G+ V L +WDTAGQ+++D +   +Y  A   ++ F     +SF+
Sbjct: 78  KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 89.4 bits (222), Expect = 2e-22
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 14/125 (11%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
           E +G++V L LWDTAGQE++D +    Y      ++ FS    DS E     W  +V++ 
Sbjct: 67  EVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHF 126

Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
           C  +P +LV NK DL              Q  V  ++   ++  +     +  S K    
Sbjct: 127 CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186

Query: 174 VNSIF 178
           V  +F
Sbjct: 187 VREVF 191

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           +G++V L LWDTAGQE++D +    Y      ++ FS    DS E
Sbjct: 69  DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 89.0 bits (221), Expect = 2e-22
 Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 14/144 (9%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMK 122
             +   +G  VRL L DTAGQ+EFD +    Y      ++ FS +   SF+     W  +
Sbjct: 58  SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPE 117

Query: 123 VENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVK 169
           +   C + P +LV  + DL +            +  V  E A LL+  +     +  S  
Sbjct: 118 IRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177

Query: 170 EDINVNSIFRYLTTKCLSELRQQE 193
              N+  +F       +     Q+
Sbjct: 178 TQKNLKEVFDAAIVAGIQYSDTQQ 201

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 18/45 (40%), Positives = 25/45 (55%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           +G  VRL L DTAGQ+EFD +    Y      ++ FS +   SF+
Sbjct: 64  DGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQ 108

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 86.7 bits (215), Expect = 1e-21
 Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 18/162 (11%)

Query: 40  ITFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ 99
           I+++T   ++F   +   +           +G+ V L LWDTAGQE++D +    Y    
Sbjct: 23  ISYTT---NAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 78

Query: 100 ACVITFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD------------QSV 146
             +I FS +   SFE   + W  +V + C   P +LV  K+DL D             + 
Sbjct: 79  VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 138

Query: 147 VAPEEADLLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
           +   +   +++ +G  + +  S      + ++F       L 
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          +G+ V L LWDTAGQE++D +    Y      +I FS +   SFE   + 
Sbjct: 49 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 87.2 bits (216), Expect = 1e-21
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 15/139 (10%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
              E E + V L LWDT+G   +D +    Y  + A ++ F     ++ ++A   W+ ++
Sbjct: 66  ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEI 125

Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGCR--LMRTSVK 169
            + C     +L+  K DL              Q+ ++ E+   +++ LG    L  ++  
Sbjct: 126 LDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185

Query: 170 EDINVNSIFRYLTTKCLSE 188
            + +++SIFR  +  CL++
Sbjct: 186 SEKSIHSIFRTASMLCLNK 204

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 59.1 bits (143), Expect = 4e-11
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           E + V L LWDT+G   +D +    Y  + A ++ F     ++ ++A   
Sbjct: 71  EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKK 120

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 84.8 bits (210), Expect = 7e-21
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 15/139 (10%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
              E + + + L LWDT+G   +D +    Y  + A +I F     ++ ++    WK ++
Sbjct: 46  ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 105

Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGCRL-MRTSVKE 170
           +  C     +LV  K DL              Q+ V+ ++   +++ +G    +  S  +
Sbjct: 106 QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165

Query: 171 DIN-VNSIFRYLTTKCLSE 188
             N V  IF   T  C+++
Sbjct: 166 SENSVRDIFHVATLACVNK 184

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 58.9 bits (143), Expect = 3e-11
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
          + + + L LWDT+G   +D +    Y  + A +I F     ++ +
Sbjct: 51 DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 95

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 15/139 (10%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS-WKMKV 123
              E + + + L LWDT+G   +D +    Y  + A +I F     ++ ++    WK ++
Sbjct: 67  ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEI 126

Query: 124 ENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE 170
           +  C     +LV  K DL              Q+ V+ ++   +++ +G    +  S  +
Sbjct: 127 QEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186

Query: 171 DIN-VNSIFRYLTTKCLSE 188
             N V  IF   T  C+++
Sbjct: 187 SENSVRDIFHVATLACVNK 205

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           + + + L LWDT+G   +D +    Y  + A +I F     ++ +
Sbjct: 72  DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLD 116

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 80.4 bits (198), Expect = 2e-18
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 14/125 (11%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE-AAHSWKMKVENE 126
             +G+ V L LWDTAG E++D +    Y      +I FS +   SF      W  +V + 
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256

Query: 127 CGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKEDIN 173
           C   P +LV  K+DL D             + +   +   +++ +G  + +  S      
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

Query: 174 VNSIF 178
           + ++F
Sbjct: 317 LKTVF 321

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 54.6 bits (131), Expect = 3e-09
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE 51
           +G+ V L LWDTAG E++D +    Y      +I FS +   SF 
Sbjct: 199 DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFH 243

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 66.2 bits (161), Expect = 2e-13
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 9/145 (6%)

Query: 45  IDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104
           ID  +F+   S  ++  IKR          +LM + T          +      +  V  
Sbjct: 106 IDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDG 165

Query: 105 F------STIDRDSFEAAHSWKMKVENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLS 156
           F      S     +F+    +   + N+  +   P V+V  K D   +  +       LS
Sbjct: 166 FLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS 225

Query: 157 RALGCRLMRTSVKEDINVNSIFRYL 181
           +    +++ TS + ++NV+  F  L
Sbjct: 226 K-KNLQVVETSARSNVNVDLAFSTL 249

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 59.8 bits (145), Expect = 2e-11
 Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 9/134 (6%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE 124
            I E +G + R  L+   GQ  ++A  K   RG    V    +        A S +   E
Sbjct: 65  DIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE 124

Query: 125 NECGE------IPTVLVQNKIDLLDQSVVAPEE-ADLLSRALGCRLMRTSVKEDINVNSI 177
           N          +P V+  NK DL D   +  E    ++       ++     E   V   
Sbjct: 125 NLAEYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182

Query: 178 FRYLTTKCLSELRQ 191
            + ++   L+ +  
Sbjct: 183 LKEVSRLVLARVAG 196

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 12/52 (23%), Positives = 19/52 (36%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWK 57
            +G + R  L+   GQ  ++A  K   RG    V    +        A S +
Sbjct: 69  VKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMR 120

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 Length = 307

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLS--RALGCRLMRTSVKEDINVNSIFRYLTT 183
           E  +I  ++   K+DL++               R +G  +  TS K+  ++  I  +   
Sbjct: 114 EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQD 173

Query: 184 K 184
           K
Sbjct: 174 K 174

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 16/142 (11%), Positives = 40/142 (28%), Gaps = 18/142 (12%)

Query: 71  GEEVRLMLWDTAGQEEF-----DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVEN 125
              + L LWD  GQ+ F            ++  Q  +  F     +  +    +   ++ 
Sbjct: 49  LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

Query: 126 ECGEIPTVLVQ---NKIDLLDQSVVAPEEADLLSRAL---------GCRLMRTSVKEDIN 173
                P   +    +K+DL+           ++                   TS+  D +
Sbjct: 109 LRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIW-DES 167

Query: 174 VNSIFRYLTTKCLSELRQQEEE 195
           +   +  +    +  +   +  
Sbjct: 168 LYKAWSQIVCSLIPNMSNHQSN 189

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 74  VRLMLWDTAGQEEFDAIT---KAYYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECG 128
           V   +WD  GQ +F   T   +  +RG  A +      D   ++    H    K      
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNP 128

Query: 129 EIPTVLVQNKIDLLDQS 145
           ++   +  +K+D L   
Sbjct: 129 DMNFEVFIHKVDGLSDD 145

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V Length = 358

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           E  ++  ++V NKIDLLD   +      + + R +G R++  S      +  +   LT +
Sbjct: 157 ETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGR 216

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
           ++E      R ++WD  GQE   +    YY   +  ++   + DR+         +KM  
Sbjct: 52  VEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA 111

Query: 124 ENECGEIPTVLVQNKIDL 141
             +  +   ++  NK D+
Sbjct: 112 HEDLRKAGLLIFANKQDV 129

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} Length = 302

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           E  ++  V+V NKIDLL++      E  + + R  G  +++ S K    ++ +  YL   
Sbjct: 107 EYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGF 166

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
           +   +WD  GQ++   + + Y++  Q  +    + DR+    A     +M  E+E  +  
Sbjct: 44  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103

Query: 132 TVLVQNKIDL 141
            ++  NK DL
Sbjct: 104 LLVFANKQDL 113

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 2/78 (2%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
           ++  + + +   +WD  GQ       + Y+    A +    + DRD    A    + +  
Sbjct: 58  LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLD 117

Query: 124 ENECGEIPTVLVQNKIDL 141
           E+E  +   ++  NK DL
Sbjct: 118 EDELRKSLLLIFANKQDL 135

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 2/70 (2%)

Query: 74  VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKVENECGEIP 131
           +   +WD  GQ++   + + Y++  Q  +    + DR+  + +     KM  E+E  +  
Sbjct: 73  ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV 132

Query: 132 TVLVQNKIDL 141
            ++  NK D+
Sbjct: 133 LLVFANKQDM 142

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
           ++    + ++L +WD  GQ       + YY    A +    + D+D    A      M  
Sbjct: 54  VETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ 113

Query: 124 ENECGEIPTVLVQNKIDL 141
           E E  +   ++  NK D 
Sbjct: 114 EEELQDAALLVFANKQDQ 131

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHS--WKMKV 123
           ++    + ++  +WD  G        + YY    A +    + DRD    + S    M  
Sbjct: 43  VETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE 102

Query: 124 ENECGEIPTVLVQNKIDL 141
           E E  +   V+  NK D+
Sbjct: 103 EEELRKAILVVFANKQDM 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	208
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.98
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.98
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.98
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.98
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.98
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.98
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.98
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.98
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.98
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.98
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.98
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.96
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.96
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.95
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.95
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.95
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.95
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.95
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.95
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.95
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.95
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.95
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.95
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.94
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.94
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.92
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.92
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.92
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.9
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.89
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.88
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.88
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.87
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.87
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.86
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.86
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.85
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.85
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.84
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.83
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.82
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.82
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.8
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.8
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.76
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.76
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.74
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.74
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.73
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.73
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.72
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.72
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.72
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.71
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.7
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.7
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.69
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.69
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.69
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.68
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.68
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.67
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.66
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.64
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.64
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.62
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.62
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.62
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.62
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.61
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.61
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.61
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.61
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.6
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.6
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.6
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.6
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.57
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.56
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.55
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.5
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.49
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.49
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.48
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.47
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.46
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.46
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.46
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.45
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.44
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.41
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.36
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.34
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.34
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.28
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.27
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.26
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.18
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.17
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.14
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.08
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.02
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.98
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.95
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.84
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.75
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.58
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.47
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.45
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.39
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.39
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.22
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.11
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.08
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.05
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.02
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.84
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.16
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.07
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.06
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.03
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.87
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.41
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.28
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.16
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	92.67
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	92.44
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	92.2
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.14
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.89
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	91.22
3end_A	307	Light-independent protochlorophyllide reductase ir	90.73
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	90.04
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	89.98
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	89.78
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	89.22
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	88.31
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	88.09
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	87.17
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	86.65
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	86.61
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	86.36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	86.34
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	85.88
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	85.74
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	85.32
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	85.29
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	85.15
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	85.15
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	84.96
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	84.78
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	84.38
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	84.35
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	84.09
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	84.05
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	83.9
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	83.7
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	83.52
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	82.95
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	82.83
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	82.3
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	82.13
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	81.76
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	81.54
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	81.38
3llu_A	196	RAS-related GTP-binding protein C; structural geno	81.32
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	81.31
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	81.19
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	80.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	80.71
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	80.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	80.66
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	80.6
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	80.19

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=6.1e-42  Score=263.12  Aligned_cols=166  Identities=27%  Similarity=0.405  Sum_probs=143.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .+.+.|||+++|+++|||  ++.|+..+.|.+.|.||+|.++..+.+.+++..+.++||||+|+++|..+++.+++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            456789999999999999  578899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||+++++||+++..|+..+.+..+ +.|++|||||+|+.++|+|+.++++++|++++++|+||||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            9999999999999999999999988766 899999999999999899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         180 YLTTKCLSE  188 (208)
Q Consensus       180 ~i~~~~~~~  188 (208)
                      .|++.+...
T Consensus       169 ~i~~~i~~~  177 (216)
T 4dkx_A          169 RVAAALPGM  177 (216)
T ss_dssp             HHHHHC---
T ss_pred             HHHHHHHhh
Confidence            999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=2.8e-34  Score=214.10  Aligned_cols=170  Identities=27%  Similarity=0.507  Sum_probs=130.9

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .++..+||+++|+.++||  +++++..+.|...+.||++.++..+.+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (183)
T 2fu5_C            4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   83 (183)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence            467889999999999999  578888899999999999999988899999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+++.++.++++++++.+++++++|||++|.|++++|+
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999987754 799999999999988788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh
Q psy2518         180 YLTTKCLSELRQQ  192 (208)
Q Consensus       180 ~i~~~~~~~~~~~  192 (208)
                      .+++.+.+...+.
T Consensus       164 ~l~~~i~~~~~~~  176 (183)
T 2fu5_C          164 TLARDIKAKMDKN  176 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcc
Confidence            9999988765543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=216.41  Aligned_cols=170  Identities=28%  Similarity=0.443  Sum_probs=146.1

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      ++.+...+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus        23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (201)
T 2hup_A           23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA  102 (201)
T ss_dssp             ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence            56688899999999999999  5678888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~  176 (208)
                      |++++|||++++.+|+.+..|+..+.+... +.|+++|+||+|+.+.+.++.+++++++...++ ++++|||++|.||++
T Consensus       103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  182 (201)
T 2hup_A          103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE  182 (201)
T ss_dssp             SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence            999999999999999999999999988764 799999999999988788999999999999999 999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy2518         177 IFRYLTTKCLSELR  190 (208)
Q Consensus       177 ~f~~i~~~~~~~~~  190 (208)
                      +|+.+++.+.+...
T Consensus       183 l~~~l~~~i~~~~~  196 (201)
T 2hup_A          183 AFLRVATELIMRHG  196 (201)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=6e-34  Score=216.37  Aligned_cols=170  Identities=32%  Similarity=0.490  Sum_probs=156.3

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      ++.++..+||+++|+.++||  +++++..+.|...+.+|++.++..+.+.+++..+.+++|||+|++++..++..+++.+
T Consensus        20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (201)
T 2ew1_A           20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA   99 (201)
T ss_dssp             --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred             ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence            56788999999999999999  4677888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++
T Consensus       100 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l  179 (201)
T 2ew1_A          100 NALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL  179 (201)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999887765 7899999999999877889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy2518         178 FRYLTTKCLSELR  190 (208)
Q Consensus       178 f~~i~~~~~~~~~  190 (208)
                      |+.+++.+.....
T Consensus       180 ~~~l~~~i~~~~~  192 (201)
T 2ew1_A          180 FLDLACRLISEAR  192 (201)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999886543

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.2e-33  Score=209.54  Aligned_cols=172  Identities=25%  Similarity=0.428  Sum_probs=153.3

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR   96 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   96 (208)
                      +-...+...+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++
T Consensus        13 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~   92 (191)
T 2a5j_A           13 GLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR   92 (191)
T ss_dssp             CCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT
T ss_pred             ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc
Confidence            3455678899999999999999  56888889999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      .+|++++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..+++++++...+++++++||++|.|++
T Consensus        93 ~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (191)
T 2a5j_A           93 GAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVE  172 (191)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            99999999999999999999999999987755 89999999999998778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy2518         176 SIFRYLTTKCLSELR  190 (208)
Q Consensus       176 ~~f~~i~~~~~~~~~  190 (208)
                      ++|+.+++.+.++.+
T Consensus       173 ~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          173 EAFINTAKEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999886543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.5e-33  Score=206.61  Aligned_cols=172  Identities=28%  Similarity=0.520  Sum_probs=155.7

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ..++..+||+++|..++||  +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus         4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   83 (181)
T 3tw8_B            4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH   83 (181)
T ss_dssp             --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence            3567899999999999999  56888889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++++|||++++.+++.+..|+..+.+..++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           84 GVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999999999988877899999999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhh
Q psy2518         180 YLTTKCLSELRQQE  193 (208)
Q Consensus       180 ~i~~~~~~~~~~~~  193 (208)
                      .+.+.+.....+..
T Consensus       164 ~l~~~~~~~~~~~~  177 (181)
T 3tw8_B          164 CITELVLRAKKDNL  177 (181)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999887665543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=4.9e-33  Score=210.82  Aligned_cols=172  Identities=28%  Similarity=0.471  Sum_probs=158.0

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      |++.++..+||+++|..++||  +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++.+..++..+++.
T Consensus         1 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   80 (203)
T 1zbd_A            1 GSHMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRG   80 (203)
T ss_dssp             -CCSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGG
T ss_pred             CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcC
Confidence            566788999999999999999  567888899999999999999988989999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      +|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++.+++..+++++++|||++|.|+++
T Consensus        81 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (203)
T 1zbd_A           81 AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ  160 (203)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence            9999999999999999999999999987764 799999999999988788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy2518         177 IFRYLTTKCLSELRQ  191 (208)
Q Consensus       177 ~f~~i~~~~~~~~~~  191 (208)
                      +|+.+.+.+.++..+
T Consensus       161 l~~~l~~~i~~~~~~  175 (203)
T 1zbd_A          161 TFERLVDVICEKMSE  175 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999998876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=9.5e-33  Score=207.80  Aligned_cols=172  Identities=27%  Similarity=0.471  Sum_probs=157.1

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ..++..+||+++|..++||  +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus        11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (196)
T 3tkl_A           11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH   90 (196)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence            3457789999999999999  56888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus        91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  170 (196)
T 3tkl_A           91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF  170 (196)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999988766 78999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy2518         179 RYLTTKCLSELRQQE  193 (208)
Q Consensus       179 ~~i~~~~~~~~~~~~  193 (208)
                      +.+++.+.+......
T Consensus       171 ~~l~~~i~~~~~~~~  185 (196)
T 3tkl_A          171 MTMAAEIKKRMGPGA  185 (196)
T ss_dssp             HHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhcccc
Confidence            999999987765433

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-33  Score=212.75  Aligned_cols=170  Identities=29%  Similarity=0.483  Sum_probs=158.0

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      +.+++..+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGA   96 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTC
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccC
Confidence            56688999999999999999  5788888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+++.+..++++.++...+++++++||++|.|++++
T Consensus        97 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (191)
T 3dz8_A           97 MGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA  176 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence            999999999999999999999999988764 8999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy2518         178 FRYLTTKCLSELR  190 (208)
Q Consensus       178 f~~i~~~~~~~~~  190 (208)
                      |+.+++.+.++..
T Consensus       177 ~~~l~~~i~~~~~  189 (191)
T 3dz8_A          177 FERLVDAICDKMS  189 (191)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999876543

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=8.1e-33  Score=209.66  Aligned_cols=171  Identities=23%  Similarity=0.364  Sum_probs=144.4

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .+.++..+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus        19 ~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   98 (200)
T 2o52_A           19 SIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA   98 (200)
T ss_dssp             ---CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccC
Confidence            45578899999999999999  5688888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..+++.++++..++++++|||++|.|++++
T Consensus        99 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  178 (200)
T 2o52_A           99 AGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA  178 (200)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999877654 7999999999999877888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy2518         178 FRYLTTKCLSELRQ  191 (208)
Q Consensus       178 f~~i~~~~~~~~~~  191 (208)
                      |+.+++.+.+...+
T Consensus       179 ~~~l~~~i~~~~~~  192 (200)
T 2o52_A          179 FLKCARTILNKIDS  192 (200)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998865543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=208.41  Aligned_cols=166  Identities=23%  Similarity=0.250  Sum_probs=144.2

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-hhHhhhcCC
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGA   98 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~   98 (208)
                      ......+||+++|++++||  +++++....+...+.++.+.++..+.+.+++..+.+.+|||+|++.+.. ++..+++++
T Consensus        18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~   97 (195)
T 3cbq_A           18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG   97 (195)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred             CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence            3456789999999999999  4566655555545667777888888899999999999999999988765 778889999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |++++|||++++.+|+.+..|+..+.....  +.|+++||||+|+.+++.++.++++++++.+++++++|||++|.|+++
T Consensus        98 d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~  177 (195)
T 3cbq_A           98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE  177 (195)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence            999999999999999999999999887653  799999999999988888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLS  187 (208)
Q Consensus       177 ~f~~i~~~~~~  187 (208)
                      +|+.+++.+..
T Consensus       178 lf~~l~~~i~~  188 (195)
T 3cbq_A          178 LFEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=8.4e-33  Score=206.44  Aligned_cols=169  Identities=25%  Similarity=0.391  Sum_probs=155.3

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .++..+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|+
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   85 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   85 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence            467889999999999999  467888899999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++.+++...++++++|||++|.|++++|+
T Consensus        86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            9999999999999999999998877654 899999999999987788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy2518         180 YLTTKCLSELRQ  191 (208)
Q Consensus       180 ~i~~~~~~~~~~  191 (208)
                      .+++.+.+...+
T Consensus       166 ~l~~~~~~~~~~  177 (186)
T 2bme_A          166 QCARKILNKIES  177 (186)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhh
Confidence            999998875543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.7e-32  Score=205.79  Aligned_cols=168  Identities=29%  Similarity=0.471  Sum_probs=154.5

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ...+..+||+++|..++||  +++++..+.|...+.+|+|.++..+.+..++..+.+.+|||+|++.+..++..+++.+|
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   96 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM   96 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence            3467789999999999999  56788889999999999999988888889999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++++++.++++++++||++|.|++++|
T Consensus        97 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  176 (189)
T 2gf9_A           97 GFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF  176 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence            99999999999999999999999887764 79999999999998878888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy2518         179 RYLTTKCLSEL  189 (208)
Q Consensus       179 ~~i~~~~~~~~  189 (208)
                      +.+++.+.++.
T Consensus       177 ~~l~~~i~~~~  187 (189)
T 2gf9_A          177 ERLVDVICEKM  187 (189)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=2.3e-32  Score=207.66  Aligned_cols=169  Identities=28%  Similarity=0.458  Sum_probs=156.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .++..+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (206)
T 2bcg_Y            4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG   83 (206)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence            467899999999999999  578888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999999987764 799999999999988788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy2518         180 YLTTKCLSELRQ  191 (208)
Q Consensus       180 ~i~~~~~~~~~~  191 (208)
                      .+.+.+.+....
T Consensus       164 ~l~~~i~~~~~~  175 (206)
T 2bcg_Y          164 TMARQIKESMSQ  175 (206)
T ss_dssp             HHHHHHHHHCCH
T ss_pred             HHHHHHHHHHhh
Confidence            999998876544

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=3.3e-33  Score=214.11  Aligned_cols=167  Identities=21%  Similarity=0.368  Sum_probs=146.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|+.++||  +++++..+.|...+.||++.++ .+.+.+++..+.+.||||+|++++..++..+++++|+
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  101 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA  101 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence            346689999999999999  5788889999999999998665 5677888999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEE
Q psy2518         101 CVITFSTIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRT  166 (208)
Q Consensus       101 ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~  166 (208)
                      +++|||++++++|+. +..|+..+.+..++.|+++||||+|+.+            .+.++.+++..+++.+++ +|++|
T Consensus       102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          102 VLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            999999999999999 6999999998888899999999999965            378999999999999999 99999


Q ss_pred             ecCCCCC-HHHHHHHHHHHHHHHhh
Q psy2518         167 SVKEDIN-VNSIFRYLTTKCLSELR  190 (208)
Q Consensus       167 Sa~~~~~-i~~~f~~i~~~~~~~~~  190 (208)
                      ||++|.| |+++|+.+++.+.....
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCcccHHHHHHHHHHHHhccCc
Confidence            9999998 99999999998875443

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-32  Score=206.21  Aligned_cols=171  Identities=25%  Similarity=0.422  Sum_probs=156.0

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      ..+.+...+||+++|..++||  +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++++..++..+++.
T Consensus        18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   97 (193)
T 2oil_A           18 GSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRG   97 (193)
T ss_dssp             --CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTT
T ss_pred             cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhcc
Confidence            356688999999999999999  567888899999999999999988999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      +|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|+++
T Consensus        98 ~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (193)
T 2oil_A           98 AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL  177 (193)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999999999887654 799999999999987778889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy2518         177 IFRYLTTKCLSELR  190 (208)
Q Consensus       177 ~f~~i~~~~~~~~~  190 (208)
                      +|+.+++.+.++..
T Consensus       178 l~~~l~~~i~~~~~  191 (193)
T 2oil_A          178 AFETVLKEIFAKVS  191 (193)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999876543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=2.7e-32  Score=202.04  Aligned_cols=165  Identities=28%  Similarity=0.429  Sum_probs=152.5

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ..+...+||+++|..++||  +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   89 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA   89 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence            3457789999999999999  56888889999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..++++++++.++++++++||++|.|++++|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (179)
T 1z0f_A           90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF  169 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999888764 89999999999998778889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         179 RYLTTKCL  186 (208)
Q Consensus       179 ~~i~~~~~  186 (208)
                      +.+++.+.
T Consensus       170 ~~l~~~i~  177 (179)
T 1z0f_A          170 LEAAKKIY  177 (179)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHh
Confidence            99998875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=9.9e-33  Score=202.95  Aligned_cols=163  Identities=26%  Similarity=0.423  Sum_probs=143.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ++..+||+++|+.++||  +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            46789999999999999  4677888889889999999998888999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.++.++++++++..+++++++||++|.|++++|+.
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            999999999999999999998877654 7999999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         181 LTTKCL  186 (208)
Q Consensus       181 i~~~~~  186 (208)
                      +.+.+.
T Consensus       163 l~~~~~  168 (170)
T 1z08_A          163 LCKRMI  168 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=7.1e-32  Score=204.68  Aligned_cols=170  Identities=18%  Similarity=0.227  Sum_probs=117.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--ccccccccccccceeeEEEEECCe--EEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHSWKMKVSIKRTIKECEGE--EVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      ...+||+++|..++||  +++++..+  .|...+.+|++.++..+.+.+++.  .+.+.+|||+|++.+..++..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            5679999999999999  56778888  888899999998999999999887  89999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC----CCCEEEEEeCCCCCC-CCCCCHHHHHHHHHHhCCeEEEEecCC-CC
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLD-QSVVAPEEADLLSRALGCRLMRTSVKE-DI  172 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~piivvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~-~~  172 (208)
                      |++++|||++++.+|+.+..|+..+....+    +.|+++|+||+|+.+ .+.++.+++.++++.+++++++|||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988754    789999999999987 788999999999999999999999999 99


Q ss_pred             CHHHHHHHHHHHHHHHhhhhhh
Q psy2518         173 NVNSIFRYLTTKCLSELRQQEE  194 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~~~~~~~~  194 (208)
                      |++++|+.+.+.+.+.......
T Consensus       178 gi~~l~~~i~~~~~~~~~~~~~  199 (208)
T 2yc2_C          178 DADAPFLSIATTFYRNYEDKVA  199 (208)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHH
Confidence            9999999999998876655443

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=2.7e-32  Score=208.74  Aligned_cols=166  Identities=20%  Similarity=0.270  Sum_probs=139.8

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYR   96 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~   96 (208)
                      +.+...+||+++|++++||  +++++..  ..|...+ +++|.+++.+.+.+++..+.+.+|||+|++. +..+...+++
T Consensus        32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~  110 (211)
T 2g3y_A           32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ  110 (211)
T ss_dssp             ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC
T ss_pred             ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh
Confidence            3567789999999999999  4566664  3445544 4577888889999999999999999999876 5556777889


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i  174 (208)
                      .+|++++|||++++.||+.+..|...+.+..  .+.|+++||||+|+.+.+.+..++++.++..++++|++|||++|.||
T Consensus       111 ~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v  190 (211)
T 2g3y_A          111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV  190 (211)
T ss_dssp             CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence            9999999999999999999999998887542  37999999999999877889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLSE  188 (208)
Q Consensus       175 ~~~f~~i~~~~~~~  188 (208)
                      +++|+.+++.+...
T Consensus       191 ~elf~~l~~~i~~~  204 (211)
T 2g3y_A          191 KELFEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=206.31  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=142.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      -...+||+++|+.++||  +++++..+.|...+.+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++++|++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~   95 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF   95 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence            35679999999999999  4678888999999999998655 566788999999999999999998875 6799999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec-CCCCCHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV-KEDINVNS  176 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa-~~~~~i~~  176 (208)
                      ++|||++++++|+.+..|+..+.+..    .+.|+++|+||+|+.+.+.++.+++.++++.+++++++||| ++|.||++
T Consensus        96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~  175 (187)
T 3c5c_A           96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH  175 (187)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence            99999999999999999999988764    48999999999999887889999999999999999999999 89999999


Q ss_pred             HHHHHHHHHH
Q psy2518         177 IFRYLTTKCL  186 (208)
Q Consensus       177 ~f~~i~~~~~  186 (208)
                      +|+.+++.+.
T Consensus       176 lf~~l~~~i~  185 (187)
T 3c5c_A          176 VFHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.1e-32  Score=204.23  Aligned_cols=163  Identities=22%  Similarity=0.263  Sum_probs=148.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECC-eEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEG-EEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ...+||+++|+.++||  +++++..+.|...+.||+|.++..+.+.+++ ..+.+++|||+|++.+..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            4679999999999999  5678888999989999999999999999976 789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC---CCC-EEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG---EIP-TVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p-iivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++|||++++.+|+.+..|+..+.....   ..| +++|+||+|+.+.+.++.+++..+++.++++++++||++|.|++++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            999999999999999999988877532   455 8999999999877889999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         178 FRYLTTKCLS  187 (208)
Q Consensus       178 f~~i~~~~~~  187 (208)
                      |+.+.+.+.+
T Consensus       164 ~~~l~~~~~~  173 (178)
T 2hxs_A          164 FQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.98  E-value=5.7e-32  Score=201.55  Aligned_cols=164  Identities=24%  Similarity=0.272  Sum_probs=150.4

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|+.++||  +++++..+.|...+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++.+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            346689999999999999  5688888999999999998666 7888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC-CCCCHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK-EDINVNSI  177 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~-~~~~i~~~  177 (208)
                      +++|||++++.+|+.+..|+..+.+...  +.|+++|+||+|+.+.+.+..++++++++.++++++++||+ +|.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            9999999999999999999998876543  78999999999998888999999999999999999999999 99999999


Q ss_pred             HHHHHHHHHH
Q psy2518         178 FRYLTTKCLS  187 (208)
Q Consensus       178 f~~i~~~~~~  187 (208)
                      |+.+.+.+.+
T Consensus       173 ~~~l~~~i~~  182 (183)
T 3kkq_A          173 FHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.98  E-value=2.4e-32  Score=200.33  Aligned_cols=162  Identities=52%  Similarity=0.756  Sum_probs=150.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|..++||  +++++..+.+...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4689999999999999  46778888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      +|||++++.+++.+..|+..+....++.|+++|+||+|+.+.+.+..++++++++..+++++++||++|.|++++|+.+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999999999988777899999999999987788889999999999999999999999999999999999


Q ss_pred             HHHH
Q psy2518         183 TKCL  186 (208)
Q Consensus       183 ~~~~  186 (208)
                      +.+.
T Consensus       163 ~~~~  166 (168)
T 1z2a_A          163 EKHL  166 (168)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.8e-32  Score=201.76  Aligned_cols=168  Identities=25%  Similarity=0.488  Sum_probs=144.7

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR   96 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   96 (208)
                      +.+.++..+||+++|..++||  +++++..+.|. ..+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++
T Consensus         3 ~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~   82 (180)
T 2g6b_A            3 GVDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR   82 (180)
T ss_dssp             --CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG
T ss_pred             CcccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc
Confidence            456678899999999999999  46777788885 468899999988888899999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      ++|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..++++.+++.++++++++||++|.|++
T Consensus        83 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  162 (180)
T 2g6b_A           83 DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD  162 (180)
T ss_dssp             GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            99999999999999999999999999988764 89999999999998888889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+.+.+.+.+
T Consensus       163 ~l~~~l~~~~~~  174 (180)
T 2g6b_A          163 LAFTAIAKELKR  174 (180)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.4e-32  Score=211.71  Aligned_cols=171  Identities=25%  Similarity=0.421  Sum_probs=146.3

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      +..++..+||+++|+.++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus         7 ~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   86 (223)
T 3cpj_B            7 GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGA   86 (223)
T ss_dssp             ---CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTC
T ss_pred             CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccC
Confidence            34567899999999999999  5678888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++
T Consensus        87 d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  166 (223)
T 3cpj_B           87 VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA  166 (223)
T ss_dssp             CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999999999987755 7899999999999877889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhh
Q psy2518         178 FRYLTTKCLSELRQ  191 (208)
Q Consensus       178 f~~i~~~~~~~~~~  191 (208)
                      |+.+++.+.+....
T Consensus       167 ~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          167 FEELINTIYQKVSK  180 (223)
T ss_dssp             HHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999998765443

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.98  E-value=2.2e-32  Score=209.36  Aligned_cols=171  Identities=24%  Similarity=0.376  Sum_probs=154.0

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe----------EEEEEEEeCCChhhhc
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE----------EVRLMLWDTAGQEEFD   88 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~Dt~g~~~~~   88 (208)
                      ..+++..+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++.          .+.+.+|||+|++++.
T Consensus        19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~   98 (217)
T 2f7s_A           19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR   98 (217)
T ss_dssp             --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred             CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence            45678899999999999999  56788888999999999999988888888877          8999999999999999


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      ..+..+++.+|++++|||++++.+++.+..|+..+....  .+.|+++|+||+|+.+++.+..+++++++..+++++++|
T Consensus        99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~  178 (217)
T 2f7s_A           99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET  178 (217)
T ss_dssp             HHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred             hHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence            999999999999999999999999999999998887655  378999999999998878889999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                      ||++|.|++++|+.+.+.+.+...+
T Consensus       179 Sa~~g~gi~~l~~~l~~~i~~~~~~  203 (217)
T 2f7s_A          179 SAATGQNVEKAVETLLDLIMKRMEQ  203 (217)
T ss_dssp             BTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998876544

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.98  E-value=5.2e-32  Score=202.96  Aligned_cols=170  Identities=23%  Similarity=0.369  Sum_probs=154.1

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCcccccccccccccee-eEEEEECCe---------EEEEEEEeCCChhhhcc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIK-RTIKECEGE---------EVRLMLWDTAGQEEFDA   89 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~Dt~g~~~~~~   89 (208)
                      +.++..+||+++|..++||  +++++..+.|...+.+|++.++. .+.+.+++.         .+.+.+|||+|++.+..
T Consensus         6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~   85 (195)
T 3bc1_A            6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS   85 (195)
T ss_dssp             CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred             cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence            4578899999999999999  56788888998899999998887 677777776         88999999999999999


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS  167 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  167 (208)
                      .+..+++.+|++++|||++++.+++.+..|+..+.....  +.|+++|+||+|+.+++.+..+++++++...+++++++|
T Consensus        86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  165 (195)
T 3bc1_A           86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETS  165 (195)
T ss_dssp             HHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999999999999999999999887763  899999999999987788899999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         168 VKEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                      |++|.|++++|+.+.+.+.+....
T Consensus       166 a~~~~~v~~l~~~l~~~~~~~~~~  189 (195)
T 3bc1_A          166 AANGTNISHAIEMLLDLIMKRMER  189 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhhh
Confidence            999999999999999998876544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.98  E-value=6.4e-32  Score=200.66  Aligned_cols=166  Identities=27%  Similarity=0.399  Sum_probs=151.1

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|..++||  +++++..+.+...+.+|++.++....+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            346789999999999999  467888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.+++..+++++++||++|.|++++|+
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            9999999999999999999999888764 789999999999987788899999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         180 YLTTKCLSE  188 (208)
Q Consensus       180 ~i~~~~~~~  188 (208)
                      .+.+.+...
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            998877543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.98  E-value=2.8e-32  Score=205.38  Aligned_cols=167  Identities=26%  Similarity=0.473  Sum_probs=145.0

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .......+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~   99 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA   99 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence            44567889999999999999  5788888999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~  176 (208)
                      |++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..++++++++.. ++++++|||++|.|+++
T Consensus       100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  179 (192)
T 2il1_A          100 KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE  179 (192)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999988887765 7999999999999877888999999999885 78999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLS  187 (208)
Q Consensus       177 ~f~~i~~~~~~  187 (208)
                      +|+.+.+.+.+
T Consensus       180 l~~~l~~~i~~  190 (192)
T 2il1_A          180 IFLKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.98  E-value=2.4e-32  Score=203.22  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=149.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4579999999999999  4688888999999999998666 788889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +|||++++++|+.+..|+..+.+...  +.|+++|+||+|+.+++.+..++++++++.++++++++||++|.|++++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999877654  7999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +++.+....
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999887544

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.98  E-value=4.8e-32  Score=199.11  Aligned_cols=162  Identities=30%  Similarity=0.512  Sum_probs=142.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|+.++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999  467888889989999999999988999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||++++.+++.+..|+..+.+... +.|+++|+||+|+ ..+.+..+++.++++.++++++++||++|.|++++|+.+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999999888765 7999999999999 4467888999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         183 TKCLSE  188 (208)
Q Consensus       183 ~~~~~~  188 (208)
                      +.+.++
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.98  E-value=1e-31  Score=201.14  Aligned_cols=160  Identities=19%  Similarity=0.211  Sum_probs=142.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .-...+||+++|++++||  +++++..+.|...+.||.+  .+.+.+.+++..+.+++|||+|++.+.     +++++|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            346789999999999999  4568889999999999854  345888899999999999999998876     7889999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCC--CCCCCCCHHHHHHHHHHhC-CeEEEEecCCCCCHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDL--LDQSVVAPEEADLLSRALG-CRLMRTSVKEDINVN  175 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~  175 (208)
                      +++|||++++.+|+.+..|+..+.....  +.|+++||||+|+  ...+.++.+++.+++..++ ++|++|||++|.||+
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            9999999999999999999999988753  7899999999999  4568899999999999997 799999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy2518         176 SIFRYLTTKCLSEL  189 (208)
Q Consensus       176 ~~f~~i~~~~~~~~  189 (208)
                      ++|+.+++.+.+..
T Consensus       169 ~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          169 RVFQDVAQKVVALR  182 (184)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999987654

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=2.5e-32  Score=205.52  Aligned_cols=167  Identities=25%  Similarity=0.408  Sum_probs=151.0

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      .+.++..+||+++|..++||  +++++..+.|...+.+|+|.++..+.+.+++..+.+.+|||+|++++..++..+++.+
T Consensus        17 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   96 (192)
T 2fg5_A           17 RGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGS   96 (192)
T ss_dssp             ----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTC
T ss_pred             ccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccC
Confidence            34578899999999999999  4678888889889999999998888888999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      |++++|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..++++++++..++++++|||++|.|++++
T Consensus        97 d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  176 (192)
T 2fg5_A           97 AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL  176 (192)
T ss_dssp             SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence            999999999999999999999999988765 7999999999999877888999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         178 FRYLTTKCLS  187 (208)
Q Consensus       178 f~~i~~~~~~  187 (208)
                      |+.+.+.+.+
T Consensus       177 ~~~l~~~i~~  186 (192)
T 2fg5_A          177 FQGISRQIPP  186 (192)
T ss_dssp             HHHHHHTCC-
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.98  E-value=5.9e-32  Score=198.73  Aligned_cols=161  Identities=22%  Similarity=0.258  Sum_probs=132.1

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-hhHhhhcCCcEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACVI  103 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~d~ii~  103 (208)
                      .+||+++|+.++||  +++++....+...+.++.+.+...+.+.+++..+.+.+|||+|++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            68999999999999  4677777777777777777888999999999999999999999998876 77788999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++++|+.+..|+..+.+..+  +.|+++|+||+|+.+++.+..+++.++++..+++++++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999988766  79999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         182 TTKCLS  187 (208)
Q Consensus       182 ~~~~~~  187 (208)
                      ++.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.98  E-value=5.4e-32  Score=203.80  Aligned_cols=168  Identities=26%  Similarity=0.365  Sum_probs=148.8

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      .++.....+||+++|..++||  +++++..+.|...+.+|++..+ ...+.+++..+.+++|||+|++++..++..++++
T Consensus        16 ~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   94 (194)
T 3reg_A           16 KIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYAD   94 (194)
T ss_dssp             -----CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred             cccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccC
Confidence            345667889999999999999  5788888999999999998655 4567889999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC--CCCCCHHHHHHHHHHhCCe-EEEEecCCCCC
Q psy2518          98 AQACVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD--QSVVAPEEADLLSRALGCR-LMRTSVKEDIN  173 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~--~~~v~~~~~~~~~~~~~~~-~~e~Sa~~~~~  173 (208)
                      +|++++|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+  .+.+..+++.++++.+++. +++|||++|.|
T Consensus        95 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  174 (194)
T 3reg_A           95 SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG  174 (194)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred             CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence            9999999999999999997 789998888777899999999999965  3788999999999999997 99999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCLSE  188 (208)
Q Consensus       174 i~~~f~~i~~~~~~~  188 (208)
                      ++++|+.+++.+...
T Consensus       175 i~~l~~~l~~~i~~~  189 (194)
T 3reg_A          175 LNEVFEKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=1.2e-31  Score=197.05  Aligned_cols=162  Identities=23%  Similarity=0.380  Sum_probs=150.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      +.+.+||+++|..++||  +++++..+.|...+.+|.|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            46789999999999999  4678888999999999999998889999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.+++.+..|+..+..... ..|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            999999999999999999999887744 7899999999999887888999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         181 LTTKC  185 (208)
Q Consensus       181 i~~~~  185 (208)
                      +.+.+
T Consensus       163 i~~~i  167 (170)
T 1z0j_A          163 ISRRI  167 (170)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.98  E-value=7.6e-32  Score=197.89  Aligned_cols=161  Identities=26%  Similarity=0.400  Sum_probs=148.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.+.+.+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            5679999999999999  46788889999999999999988899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      +|||++++.+++.+..|+..+.+... +.|+++|+||+|+.+++.+..+++.+++...+++++++||++|.|++++|+.+
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999887754 89999999999998778888999999999999999999999999999999999


Q ss_pred             HHHH
Q psy2518         182 TTKC  185 (208)
Q Consensus       182 ~~~~  185 (208)
                      .+.+
T Consensus       164 ~~~~  167 (170)
T 1r2q_A          164 AKKL  167 (170)
T ss_dssp             HHTS
T ss_pred             HHHH
Confidence            8764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.98  E-value=8.9e-32  Score=203.59  Aligned_cols=168  Identities=21%  Similarity=0.308  Sum_probs=140.4

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ......+||+++|..++||  +++++..+.|...+.+|++. .+...+.+++..+.+++|||+|++++..++..+++++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFD-NFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSE-EEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccc-eeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            4567789999999999999  46778888899999999974 44677888999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEE
Q psy2518         100 ACVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMR  165 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e  165 (208)
                      ++++|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+            .+.+..+++..++..+++ +|++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999996 79999988777899999999999965            367889999999999998 9999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      |||++|.|++++|+.+++.+.+...
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~~~~  198 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQYSD  198 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHHhcccc
Confidence            9999999999999999999876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.98  E-value=1.6e-31  Score=198.35  Aligned_cols=160  Identities=17%  Similarity=0.211  Sum_probs=138.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  +++++..+.|.+ +.||++ +.+.+.+.+++..+.+++|||+|+++     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            3579999999999999  568888888887 889998 55578888999999999999999876     46788999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCC--CCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDL--LDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++++|+.+..|+..+....    ++.|+++||||+|+  ...+.++.+++++++... ++++++|||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999766655443    37899999999999  356789999999999887 5799999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy2518         176 SIFRYLTTKCLSELRQ  191 (208)
Q Consensus       176 ~~f~~i~~~~~~~~~~  191 (208)
                      ++|+.+++.+....++
T Consensus       158 ~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          158 RVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999998876544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=8.6e-32  Score=201.90  Aligned_cols=166  Identities=26%  Similarity=0.393  Sum_probs=147.3

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-chhHhhhcC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-AITKAYYRG   97 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~~~~~~~   97 (208)
                      +......+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++++. .++..+++.
T Consensus        14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (189)
T 1z06_A           14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN   93 (189)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence            44556789999999999999  467888899999999999999999999999999999999999999998 889999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC---C
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED---I  172 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~---~  172 (208)
                      +|++++|||++++.+|+.+..|+..+.+..  .+.|+++|+||+|+.+.+.+..++++.++...+++++++||++|   .
T Consensus        94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~  173 (189)
T 1z06_A           94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND  173 (189)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence            999999999999999999999999998875  38999999999999887889999999999999999999999999   9


Q ss_pred             CHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCL  186 (208)
Q Consensus       173 ~i~~~f~~i~~~~~  186 (208)
                      |++++|+.+++.+.
T Consensus       174 ~i~~l~~~l~~~i~  187 (189)
T 1z06_A          174 HVEAIFMTLAHKLK  187 (189)
T ss_dssp             CHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=1.1e-31  Score=199.18  Aligned_cols=164  Identities=26%  Similarity=0.293  Sum_probs=148.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.+|++..+. +.+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            4679999999999999  46788888999999999986654 77888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +|||++++.++..+..|+..+.+...  +.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998855443  7999999999999887889999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +.+.+.+..
T Consensus       166 l~~~~~~~~  174 (181)
T 2fn4_A          166 LVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999887644

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.5e-32  Score=205.81  Aligned_cols=172  Identities=25%  Similarity=0.345  Sum_probs=137.8

Q ss_pred             EeeccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhH
Q psy2518          15 LWDTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITK   92 (208)
Q Consensus        15 ~~d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~   92 (208)
                      .-+.+.+......+||+++|..++||  +++++..+.|...+.+|+|.++..+.+.+++..+.+.||||+|++.+..++.
T Consensus        16 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   95 (199)
T 2p5s_A           16 PRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAK   95 (199)
T ss_dssp             ------------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHH
T ss_pred             cccccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHH
Confidence            34445566677889999999999999  5678888899999999999999999999999999999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCC------CCCCCCHHHHHHHHHHhCCeEEE
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLL------DQSVVAPEEADLLSRALGCRLMR  165 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~------~~~~v~~~~~~~~~~~~~~~~~e  165 (208)
                      .+++.+|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.      ..+.+..++++.++...++++++
T Consensus        96 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  175 (199)
T 2p5s_A           96 SYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCE  175 (199)
T ss_dssp             HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEE
T ss_pred             HHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999999999998887664 79999999999995      45788899999999999999999


Q ss_pred             EecCCCCCHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      |||++|.|++++|+.+++.+.
T Consensus       176 ~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          176 TSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             eeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999998874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=2.9e-31  Score=195.95  Aligned_cols=164  Identities=23%  Similarity=0.286  Sum_probs=135.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--hcchhHhhhcCCcE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--FDAITKAYYRGAQA  100 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~~~~~~~~~~d~  100 (208)
                      +..+||+++|+.++||  +++++..+.+...+ ++.|.++..+.+.+++..+.+.+|||+|++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            3578999999999999  46777777776554 4677888888899999999999999999988  56677888999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      +++|||++++.+|+.+..|+..+.+..  .+.|+++|+||+|+.+.+.+..++++.++..+++++++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653  279999999999998878899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy2518         179 RYLTTKCLSEL  189 (208)
Q Consensus       179 ~~i~~~~~~~~  189 (208)
                      +.+++.+....
T Consensus       161 ~~l~~~~~~~~  171 (175)
T 2nzj_A          161 EGVVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999886544

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=2.6e-31  Score=196.73  Aligned_cols=164  Identities=27%  Similarity=0.438  Sum_probs=145.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+...+..+++.+|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            456789999999999999  467888889999999999999989999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCCH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDINV  174 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i  174 (208)
                      +++|||++++.+++.+..|+..+....     .+.|+++|+||+|+. ++.+..+++.++++ ..+++++++||++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            999999999999999999999987665     378999999999997 57788899999998 55679999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLS  187 (208)
Q Consensus       175 ~~~f~~i~~~~~~  187 (208)
                      +++|+.+++.+.+
T Consensus       162 ~~l~~~l~~~~~~  174 (177)
T 1wms_A          162 AAAFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=9.5e-32  Score=199.12  Aligned_cols=165  Identities=28%  Similarity=0.419  Sum_probs=150.1

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ......+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+...+..+++.+|
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            3345679999999999999  46778888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+++.+..+++..++...+++++++||++|.|++++|
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            99999999999999999999999887765 79999999999998778889999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         179 RYLTTKCL  186 (208)
Q Consensus       179 ~~i~~~~~  186 (208)
                      +.+.+.+.
T Consensus       169 ~~l~~~~~  176 (179)
T 2y8e_A          169 RRVAAALP  176 (179)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHh
Confidence            99987653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.7e-31  Score=196.07  Aligned_cols=160  Identities=28%  Similarity=0.412  Sum_probs=147.1

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.+...+.||++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            468999999999999  467888899998999999999888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC---CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~---~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      |||++++.+++.+..|+..+..... +.|+++|+||+|+.+.   +.+..+++++++...+++++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999887764 7999999999999654   77889999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         180 YLTTKC  185 (208)
Q Consensus       180 ~i~~~~  185 (208)
                      .+.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=2.7e-31  Score=202.46  Aligned_cols=174  Identities=29%  Similarity=0.511  Sum_probs=151.2

Q ss_pred             eccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhh
Q psy2518          17 DTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY   94 (208)
Q Consensus        17 d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~   94 (208)
                      +......++..+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+
T Consensus        10 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~   89 (213)
T 3cph_A           10 SSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY   89 (213)
T ss_dssp             ----------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHH
T ss_pred             ccCCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence            334455678899999999999999  467788888988999999999999999999999999999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      ++.+|++++|||++++.+|+.+..|+..+..... +.|+++|+||+|+ ..+.+..+++..++..++++++++||++|.|
T Consensus        90 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  168 (213)
T 3cph_A           90 YRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN  168 (213)
T ss_dssp             HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred             hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence            9999999999999999999999999999888766 7899999999999 4577888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q psy2518         174 VNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       174 i~~~f~~i~~~~~~~~~~  191 (208)
                      ++++|+.+.+.+.+....
T Consensus       169 i~~l~~~l~~~~~~~~~~  186 (213)
T 3cph_A          169 VNEIFFTLAKLIQEKIDS  186 (213)
T ss_dssp             SHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            999999999988776543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=4e-31  Score=200.35  Aligned_cols=167  Identities=27%  Similarity=0.319  Sum_probs=150.4

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ......+||+++|..++||  +++++..+.|...+.+|.+.. +...+.+++..+.+.+|||+|++.+..++..+++.+|
T Consensus         9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   87 (206)
T 2bov_A            9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   87 (206)
T ss_dssp             --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceE-EEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCC
Confidence            3446689999999999999  467788888999999999844 4567788999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++++|||++++.+|+.+..|+..+.....  +.|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  167 (206)
T 2bov_A           88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  167 (206)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999988765  8999999999999887889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy2518         178 FRYLTTKCLSEL  189 (208)
Q Consensus       178 f~~i~~~~~~~~  189 (208)
                      |+.+++.+....
T Consensus       168 ~~~l~~~i~~~~  179 (206)
T 2bov_A          168 FFDLMREIRARK  179 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcc
Confidence            999999987654

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-31  Score=200.09  Aligned_cols=162  Identities=21%  Similarity=0.313  Sum_probs=146.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ....+||+++|+.++||  +++++..+.|.+.+.+|++..+ .+.+.+++..+.+++|||+|++++..++..+++.+|++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            35789999999999999  5678888899999999998554 66778889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518         102 VITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS  167 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S  167 (208)
                      ++|||++++++|+.+. .|+..+.+..++.|+++|+||+|+.+.            +.++.+++.++++.+++ ++++||
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999996 899999888778999999999999653            57889999999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~  186 (208)
                      |++|.|++++|+.+++.++
T Consensus       174 a~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999998875

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=2.8e-32  Score=205.10  Aligned_cols=167  Identities=17%  Similarity=0.159  Sum_probs=146.2

Q ss_pred             cccceeeeEEEecCceEEE-EEEeeecCcccccc-----------ccccccceeeEEE-EECCeEEEEEEEeCCChhhhc
Q psy2518          22 EEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAH-----------SWKMKVSIKRTIK-ECEGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~-----------~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~g~~~~~   88 (208)
                      ......+||+++|+.++|| ++.+++.+.|...+           .||++.++..+.+ .+++..+.+++|||+|++++.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3457789999999999999 45577788888774           5688888877777 778899999999999999999


Q ss_pred             chhHhhhcCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-
Q psy2518          89 AITKAYYRGAQACVITFSTI------DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-  161 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-  161 (208)
                      .++..+++++|++++|||++      +.++|+.+..|+..+.....+.|+++|+||+|+.+  .+..++++++++..++ 
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~  166 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKF  166 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCS
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCc
Confidence            99999999999999999999      66788888899988855445899999999999955  4889999999999999 


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         162 RLMRTSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       162 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      ++++|||++|.|++++|+.+++.+.+...
T Consensus       167 ~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          167 PVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999887654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=3.8e-31  Score=198.73  Aligned_cols=166  Identities=27%  Similarity=0.432  Sum_probs=151.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|..++||  +++++..+.|...+.+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus        11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   90 (195)
T 1x3s_A           11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG   90 (195)
T ss_dssp             TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence            446789999999999999  578888899999999999999988999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      +++|||++++.+++.+..|+..+.+...  +.|+++|+||+|+. .+.+..+++.++++..+++++++||++|.|++++|
T Consensus        91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  169 (195)
T 1x3s_A           91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF  169 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence            9999999999999999999999987653  78999999999994 46788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q psy2518         179 RYLTTKCLSEL  189 (208)
Q Consensus       179 ~~i~~~~~~~~  189 (208)
                      +.+.+.+....
T Consensus       170 ~~l~~~~~~~~  180 (195)
T 1x3s_A          170 EELVEKIIQTP  180 (195)
T ss_dssp             HHHHHHHHTSG
T ss_pred             HHHHHHHHhhh
Confidence            99999987543

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=4.1e-31  Score=193.67  Aligned_cols=160  Identities=21%  Similarity=0.264  Sum_probs=120.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|++++||  +++++.+..+ ..+.++.+..+ .+.+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            68999999999999  3555554444 35566777444 67778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ||++++++|+.+..|+..+.+..  ++.|+++|+||+|+.+.+.+..++++.++...++++++|||++|.|++++|+.+.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999887754  3799999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         183 TKCLSE  188 (208)
Q Consensus       183 ~~~~~~  188 (208)
                      +.+..+
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            987653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=9.3e-32  Score=204.83  Aligned_cols=164  Identities=21%  Similarity=0.374  Sum_probs=145.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .....+||+++|+.++||  +++++..+.|...+.||++.++ .+.+.+++..+.+.+|||+|++.|..++..+++.+|+
T Consensus        24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  102 (205)
T 1gwn_A           24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA  102 (205)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence            346789999999999999  5788889999999999998665 5667788999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEE
Q psy2518         101 CVITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRT  166 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~  166 (208)
                      +++|||++++.+|+.+ ..|+..+.+..++.|+++||||+|+.+            .+.++.++++++++.++ ++|++|
T Consensus       103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            9999999999999999 789999988777899999999999964            36789999999999988 599999


Q ss_pred             ecC-CCCCHHHHHHHHHHHHHH
Q psy2518         167 SVK-EDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       167 Sa~-~~~~i~~~f~~i~~~~~~  187 (208)
                      ||+ +|.||+++|+.+++.+++
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHhh
Confidence            999 689999999999998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=4.3e-31  Score=196.85  Aligned_cols=168  Identities=27%  Similarity=0.318  Sum_probs=148.7

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      +......+||+++|..++||  +++++..+.|...+.+|.+.. ....+.+++..+.+.+|||+|++.+..++..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            44456789999999999999  467788888989999998844 456677899999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |++++|||++++.+++.+..|+..+.....  +.|+++|+||+|+.+.+.+..+++.++++.++++++++||++|.|+++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            999999999999999999999999988776  799999999999987788899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2518         177 IFRYLTTKCLSEL  189 (208)
Q Consensus       177 ~f~~i~~~~~~~~  189 (208)
                      +|+.+.+.+....
T Consensus       171 l~~~l~~~i~~~~  183 (187)
T 2a9k_A          171 VFFDLMREIRARK  183 (187)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=9.8e-32  Score=200.88  Aligned_cols=162  Identities=21%  Similarity=0.383  Sum_probs=145.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  +++++..+.|...+.||++..+ .+.+.+++..+.+.+|||+|++.|..++..+++.+|+++
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            5679999999999999  5678888999999999998655 566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEEec
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa  168 (208)
                      +|||++++.+|+.+ ..|+..+.+..++.|+++|+||+|+.+            .+.++.+++.++++.++ ++|++|||
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa  163 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  163 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence            99999999999998 789999888777899999999999964            26789999999999988 59999999


Q ss_pred             C-CCCCHHHHHHHHHHHHHH
Q psy2518         169 K-EDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       169 ~-~~~~i~~~f~~i~~~~~~  187 (208)
                      + ++.|++++|+.+++.+++
T Consensus       164 ~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          164 LQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTBHHHHHHHHHHHHHHHHT
T ss_pred             cCCCcCHHHHHHHHHHHHhc
Confidence            9 689999999999988763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=8.4e-32  Score=204.03  Aligned_cols=167  Identities=23%  Similarity=0.296  Sum_probs=145.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ....+||+++|..++||  +++++..+.|...+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   99 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY   99 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence            35689999999999999  5788889999999999998665 77777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++|||++++.+|+.+..|+..+.....  +.|+++|+||+|+.+++.+..+++..+++..+++++++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~  179 (201)
T 3oes_A          100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFT  179 (201)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999999887644  789999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy2518         180 YLTTKCLSELRQ  191 (208)
Q Consensus       180 ~i~~~~~~~~~~  191 (208)
                      .+++.+.+....
T Consensus       180 ~l~~~i~~~~~~  191 (201)
T 3oes_A          180 KVIQEIARVENS  191 (201)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHhhhhh
Confidence            999998765544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=4.7e-31  Score=193.11  Aligned_cols=160  Identities=28%  Similarity=0.341  Sum_probs=143.0

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.|...+.+|.+.. ....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceE-EEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            468999999999999  467788888988999998854 45667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++++++.+..|+..+.....  +.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999999988765  79999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      .+.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.97  E-value=1.4e-30  Score=196.35  Aligned_cols=164  Identities=20%  Similarity=0.255  Sum_probs=136.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEECCeEEEEEEEeCCChhh-hcchhHhhhcCCc
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-FDAITKAYYRGAQ   99 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-~~~~~~~~~~~~d   99 (208)
                      ...+||+++|++++||  +++++.+  ..|.+.+. ++|.+++.+.+.+++..+.+.+|||+|++. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            3579999999999999  4566663  34555544 577888888899999999999999999876 5567788899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++++|||+++++||+.+..|+..+.+..  ++.|+++|+||+|+.+.+.+..+++..++..++++|++|||++|.||+++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988877653  37899999999999777888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy2518         178 FRYLTTKCLSEL  189 (208)
Q Consensus       178 f~~i~~~~~~~~  189 (208)
                      |+.+++.+....
T Consensus       163 f~~l~~~~~~~~  174 (192)
T 2cjw_A          163 FEGIVRQVRLRR  174 (192)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc
Confidence            999999886554

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=4.4e-31  Score=193.40  Aligned_cols=159  Identities=26%  Similarity=0.364  Sum_probs=143.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.+.+.+.+|++..+ .+.+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999  4678888899999999998554 5677788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      |||++++.+|+.+..|+..+.+...  +.|+++|+||+|+.+++.+..+++..+++.+ +++++++||++|.|++++|+.
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            9999999999999999988877643  7999999999999887888999999999988 789999999999999999999


Q ss_pred             HHHHH
Q psy2518         181 LTTKC  185 (208)
Q Consensus       181 i~~~~  185 (208)
                      +.+.+
T Consensus       161 l~~~i  165 (167)
T 1c1y_A          161 LVRQI  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98876

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=4e-31  Score=196.24  Aligned_cols=166  Identities=25%  Similarity=0.410  Sum_probs=134.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      ....+||+++|..++||  +++++..+.|...+.+|++.++....+.++ +..+.+.+|||+|++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            46689999999999999  467888899999999999999999988887 677899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCC-CCCCCCHHHHHHHHH-HhCCeEEEEecCCCCC
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLL-DQSVVAPEEADLLSR-ALGCRLMRTSVKEDIN  173 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~-~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~  173 (208)
                      +++|||++++.+++.+..|+..+....     .+.|+++|+||+|+. ..+.+..+++.+++. ..++++++|||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            999999999999999999999887765     378999999999994 446788899999988 4567999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2518         174 VNSIFRYLTTKCLSEL  189 (208)
Q Consensus       174 i~~~f~~i~~~~~~~~  189 (208)
                      ++++|+.+.+.+.++.
T Consensus       165 i~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          165 VDTAFEEIARSALQQN  180 (182)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999887643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=9.1e-31  Score=198.65  Aligned_cols=167  Identities=25%  Similarity=0.398  Sum_probs=149.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      .+..+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            46789999999999999  4678888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-HhCCeEEEEecCCCCCHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-ALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~  175 (208)
                      ++|||++++.+|+.+..|+..+....     .+.|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            99999999999999999999887665     378999999999997 46778888888888 567899999999999999


Q ss_pred             HHHHHHHHHHHHHhhh
Q psy2518         176 SIFRYLTTKCLSELRQ  191 (208)
Q Consensus       176 ~~f~~i~~~~~~~~~~  191 (208)
                      ++|+.+++.+.+....
T Consensus       164 ~l~~~l~~~~~~~~~~  179 (207)
T 1vg8_A          164 QAFQTIARNALKQETE  179 (207)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998876643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=7.6e-32  Score=205.68  Aligned_cols=165  Identities=27%  Similarity=0.403  Sum_probs=144.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  ++.++..+.|...+.||++.. +...+.+++..+.+++|||+|+++|..++..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4579999999999999  467888899999999999854 4667778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC--------CCCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS--------VVAPEEADLLSRALGC-RLMRTSVKEDI  172 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~--------~v~~~~~~~~~~~~~~-~~~e~Sa~~~~  172 (208)
                      +|||++++++|+.+. .|+..+....++.|+++|+||+|+.+.+        .+..+++.+++..+++ +|++|||++|.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence            999999999999996 8999998877789999999999996543        3578899999999997 99999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q psy2518         173 NVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~~~~  190 (208)
                      |++++|+.+++.+.....
T Consensus       166 gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             THHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHhhhhh
Confidence            999999999999876543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=1.6e-30  Score=196.25  Aligned_cols=164  Identities=22%  Similarity=0.381  Sum_probs=147.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeE----------------------------
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEE----------------------------   73 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~----------------------------   73 (208)
                      .+..+||+++|..++||  +++++..+.|.+.+.+|++.++..+.+.+++..                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            35689999999999999  568888899999999999999988888888766                            


Q ss_pred             ---------EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518          74 ---------VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ  144 (208)
Q Consensus        74 ---------~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~  144 (208)
                               +.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+....+ .|+++|+||+| ..+
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D-~~~  161 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKID-KNK  161 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTT-CC-
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCC-ccc
Confidence                     8999999999999999999999999999999999999999999999999987665 99999999999 555


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         145 SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      +.+..+++++++...+++++++||++|.|++++|+.+.+.+.++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            788899999999999999999999999999999999999887643

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=4.1e-31  Score=196.95  Aligned_cols=162  Identities=23%  Similarity=0.370  Sum_probs=145.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|..++||  +++++..+.|...+.+|++. .+...+.+++..+.+++|||+|++++..++..+++.+|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc-eeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4579999999999999  46777788899999999974 45677788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+.            +.+..+++..+++..++ ++++|||
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence            999999999999996 799998887778999999999998653            67889999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~~  187 (208)
                      ++|.|++++|+.+.+.+..
T Consensus       162 ~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          162 LTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCccCHHHHHHHHHHHHhc
Confidence            9999999999999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=3.6e-30  Score=192.28  Aligned_cols=164  Identities=26%  Similarity=0.338  Sum_probs=145.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.+...+.+|.+ +.....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            578999999999999  4678888889999999986 6667778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.+|+.+..|+..+.....  +.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887654  799999999999964 6788899999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q psy2518         182 TTKCLSELRQ  191 (208)
Q Consensus       182 ~~~~~~~~~~  191 (208)
                      .+.+......
T Consensus       161 ~~~~~~~~~~  170 (189)
T 4dsu_A          161 VREIRKHKEK  170 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9998766544

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=7.9e-31  Score=191.75  Aligned_cols=160  Identities=22%  Similarity=0.335  Sum_probs=145.5

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.|...+.+|++ +...+.+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            368999999999999  4577888899999999987 4557788889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.+++.+..|+..+.+...  +.|+++|+||+|+.+++.+..++++.+++.++++++++||++|.|++++|+.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999988877654  79999999999998778889999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T 1kao_A          161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=6.4e-31  Score=201.23  Aligned_cols=164  Identities=22%  Similarity=0.385  Sum_probs=126.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  +++++..+.|...+.+|++. .+...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFE-RYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCE-EEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccce-eEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999  46788888898889999874 44667788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+.            +.++.+++..+++..++ ++++|||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            999999999999996 799999887778999999999999654            37888999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q psy2518         169 KEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      ++|.|++++|+.+++.+++..
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999987543

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.97  E-value=4.1e-31  Score=203.02  Aligned_cols=168  Identities=24%  Similarity=0.384  Sum_probs=151.4

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      .+......+||+++|..++||  ++++++.+.|...+.+|+|.++....+.+++..+.+.+|||+|++.+..++..++++
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            345567889999999999999  467778899999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +|++++|||++++.+|+.+..|+..+.+..++.|+++|+||+|+.+.+. . ++...+++..++++++|||++|.|++++
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999999999998887899999999999966443 3 2566788889999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q psy2518         178 FRYLTTKCLSEL  189 (208)
Q Consensus       178 f~~i~~~~~~~~  189 (208)
                      |+.+.+.+....
T Consensus       166 ~~~l~~~l~~~~  177 (221)
T 3gj0_A          166 FLWLARKLIGDP  177 (221)
T ss_dssp             HHHHHHHHHTCT
T ss_pred             HHHHHHHHHhCc
Confidence            999999987654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-30  Score=196.89  Aligned_cols=163  Identities=23%  Similarity=0.251  Sum_probs=146.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.+|++..+ .+.+.+++..+.+.+|||+|++. ...+..+++.+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            4579999999999999  5688888999999999998554 56678899999999999999988 778889999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFR  179 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~  179 (208)
                      +|||++++++|+.+..|+..+.....  +.|+++|+||+|+.+.+.++.+++.++++.+++++++|||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            99999999999999999998887643  89999999999998878899999999999999999999999999 9999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      .+++.+.+..
T Consensus       184 ~l~~~i~~~~  193 (196)
T 2atv_A          184 ELCREVRRRR  193 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhc
Confidence            9999987543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.3e-32  Score=208.20  Aligned_cols=164  Identities=28%  Similarity=0.492  Sum_probs=141.9

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .++..+||+++|..++||  +++++..+.|...+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            457789999999999999  568888899999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+..|+..+..... +.|+++|+||+|+.+.+.+..++++.++..++++++++||++|.|++++|+
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999999999987765 799999999999988788888888999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy2518         180 YLTTKCL  186 (208)
Q Consensus       180 ~i~~~~~  186 (208)
                      .+++.+.
T Consensus       189 ~l~~~l~  195 (199)
T 3l0i_B          189 TMAAEIK  195 (199)
T ss_dssp             HHTTTTT
T ss_pred             HHHHHHH
Confidence            9987764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=4e-30  Score=194.87  Aligned_cols=161  Identities=27%  Similarity=0.414  Sum_probs=145.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.||++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            4578999999999999  56888889999999999987664 45778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.+.            +.+..+++..++...++ ++++|||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA  181 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence            99999999999999 7898888887778999999999999664            56888999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~  186 (208)
                      ++|.|++++|+.+.+.++
T Consensus       182 ~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          182 KTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=1.6e-30  Score=199.10  Aligned_cols=169  Identities=20%  Similarity=0.263  Sum_probs=145.7

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRG   97 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~   97 (208)
                      +++....+||+++|..++||  +++++..+.|...+.+|++.......+... +..+.+.+|||+|++.+..++..+++.
T Consensus         5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   84 (218)
T 4djt_A            5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG   84 (218)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence            45567789999999999999  578888899999999999987777666554 455899999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      +|++++|||++++.+++.+..|+..+..... +.|+++|+||+|+.+.+.+..+++..++...++++++|||++|.|+++
T Consensus        85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~  164 (218)
T 4djt_A           85 ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL  164 (218)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTH
T ss_pred             CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHH
Confidence            9999999999999999999999999988877 699999999999988778999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2518         177 IFRYLTTKCLSEL  189 (208)
Q Consensus       177 ~f~~i~~~~~~~~  189 (208)
                      +|+.+++.+....
T Consensus       165 l~~~l~~~~~~~~  177 (218)
T 4djt_A          165 PFLHLARIFTGRP  177 (218)
T ss_dssp             HHHHHHHHHHCCT
T ss_pred             HHHHHHHHHhccc
Confidence            9999999886543

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=1.3e-31  Score=199.23  Aligned_cols=161  Identities=25%  Similarity=0.408  Sum_probs=126.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  +++++..+.|...+.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            5679999999999999  4677888889999999998554 444667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC----------CCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV----------VAPEEADLLSRALGC-RLMRTSVKE  170 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~  170 (208)
                      +|||++++.+|+.+. .|+..+.+..++.|+++|+||+|+.+.+.          +..+++.++++.+++ ++++|||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            999999999999996 79999988777899999999999865433          578899999999997 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCL  186 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~  186 (208)
                      |.|++++|+.+++.++
T Consensus       165 ~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CTTHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.7e-30  Score=194.15  Aligned_cols=162  Identities=26%  Similarity=0.402  Sum_probs=139.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.||++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            4568999999999999  56788889999999999986554 44778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+ ..|+..+....++.|+++|+||+|+.+.            +.+..+++..++...++ ++++|||
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  181 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA  181 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence            99999999999999 7899888887778999999999999654            56888999999999998 9999999


Q ss_pred             CCCCCHHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~~  187 (208)
                      ++|.|++++|+.+.+.+++
T Consensus       182 ~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          182 KTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             TTCTTHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999998864

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=1.6e-30  Score=197.56  Aligned_cols=160  Identities=22%  Similarity=0.361  Sum_probs=141.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  ++.++..+.|...+.+|++ +.....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            5579999999999999  4677888999999999997 566777888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+            .+..+++..+++..++ ++++|||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            999999999999996 8999998887789999999999986543            4888999999999997 6999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKC  185 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~  185 (208)
                      ++|.|++++|+.+.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.96  E-value=4.2e-29  Score=187.18  Aligned_cols=163  Identities=24%  Similarity=0.286  Sum_probs=135.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.+...+.+|.+. .....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccce-EEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4679999999999999  46777788888888888874 44577788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +|||++++.+++.+..|+..+.....  +.|+++|+||+|+.+ +.+..++++++++.++++++++||++|.|++++|+.
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  176 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYT  176 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887765  799999999999966 677889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +.+.+.+..
T Consensus       177 l~~~~~~~~  185 (190)
T 3con_A          177 LVREIRQYR  185 (190)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHH
Confidence            999887543

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.96  E-value=3.4e-29  Score=182.71  Aligned_cols=159  Identities=26%  Similarity=0.339  Sum_probs=143.1

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.+...+.+|.+ +.....+.+++..+.+.+|||+|++++...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            358999999999999  4677778888888889887 4446777889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.+++.+..|+..+.....  +.|+++|+||+|+.+ +.+..+++.++++.++++++++||++|.|++++|+.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999887765  799999999999966 6678899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      .+.+.
T Consensus       160 ~~~~~  164 (166)
T 2ce2_X          160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=7.9e-30  Score=187.42  Aligned_cols=159  Identities=23%  Similarity=0.284  Sum_probs=141.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|..++||  +++++..+.|...+.+|++.. ....+..++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT-YRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE-EEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcccc-EEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            368999999999999  467888888988889998744 45667788899999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      |||++++.+++.+..|+..+.+..   ++.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999999988887654   37899999999999877888899999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         181 LTTKC  185 (208)
Q Consensus       181 i~~~~  185 (208)
                      +.+.+
T Consensus       161 l~~~~  165 (172)
T 2erx_A          161 LLNLE  165 (172)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            98764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.96  E-value=1.3e-28  Score=186.28  Aligned_cols=166  Identities=25%  Similarity=0.434  Sum_probs=148.4

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ++..+|++++|+.|+||  +++++.+..|...+.||+|.++....+.++|..+.+.+|||+|++++...+..+++.++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            35689999999999999  4677888889889999999999899999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||++++.+++++..|+..+..... +.|+++++||+|+.+.+.+..+++..++...++.++++||+++.|++++|+.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999999899988766543 7899999999999877888889999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +.+.+.+..
T Consensus       162 l~~~~~~~~  170 (199)
T 2f9l_A          162 ILTEIYRIV  170 (199)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=1.1e-29  Score=191.40  Aligned_cols=167  Identities=13%  Similarity=0.170  Sum_probs=128.0

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhh
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYY   95 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~   95 (208)
                      +.........||+++|..++||  +++++..+.|.. .+.+|+|..  ...  +++..+.+.+|||+|++.+..++..++
T Consensus         9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~--~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~   84 (199)
T 4bas_A            9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYN--VET--FEKGRVAFTVFDMGGAKKFRGLWETYY   84 (199)
T ss_dssp             -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEE--EEE--EEETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred             ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccccee--EEE--EEeCCEEEEEEECCCCHhHHHHHHHHH
Confidence            3456677889999999999999  578888999998 889999833  233  345567899999999999999999999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---------CCCCEEEEEeCCCCCCCCCCCHHHH-HHH-----HHHhC
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENEC---------GEIPTVLVQNKIDLLDQSVVAPEEA-DLL-----SRALG  160 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~piivvgnK~Dl~~~~~v~~~~~-~~~-----~~~~~  160 (208)
                      +.+|++++|||++++++|..+..|+..+.+..         .+.|+++|+||+|+.+..  ..++. ..+     ++..+
T Consensus        85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~  162 (199)
T 4bas_A           85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAK--TAAELVEILDLTTLMGDHP  162 (199)
T ss_dssp             TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCC--CHHHHHHHHTHHHHHTTSC
T ss_pred             hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCC--CHHHHHHHhcchhhccCCe
Confidence            99999999999999999999999998886652         278999999999996542  22222 211     13356


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         161 CRLMRTSVKEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       161 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                      +++++|||++|.||+++|+.+++.+.+..+.
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          163 FVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             eEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence            7899999999999999999999998766433

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=7.7e-29  Score=186.76  Aligned_cols=162  Identities=22%  Similarity=0.277  Sum_probs=142.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.+|++.. +...+..++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            4579999999999999  468888889988899998844 4566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +|||++++.+++.+..|+..+.+..   ++.|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++|+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            9999999999999988887776654   2689999999999965 67788999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         180 YLTTKCLSE  188 (208)
Q Consensus       180 ~i~~~~~~~  188 (208)
                      .+++.+..+
T Consensus       164 ~l~~~~~~~  172 (199)
T 2gf0_A          164 ELLTLETRR  172 (199)
T ss_dssp             HHHHHCSSS
T ss_pred             HHHHHHhhh
Confidence            999876543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=1.7e-30  Score=194.34  Aligned_cols=161  Identities=15%  Similarity=0.232  Sum_probs=122.0

Q ss_pred             eeeEEEecCceEEE--EEEeeec--CccccccccccccceeeEEEEE---CCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDR--DSFEAAHSWKMKVSIKRTIKEC---EGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~--~~f~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      .+||+++|++|+||  +++++..  ..|...+.+|+|.++..+.+.+   ++..+.+++|||+|+++|..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            47999999999999  3566655  3677788999998887776655   356789999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC---HHHHHHHHHHhCCe----EEEEecCCC
Q psy2518         100 ACVITFSTIDR-DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA---PEEADLLSRALGCR----LMRTSVKED  171 (208)
Q Consensus       100 ~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~e~Sa~~~  171 (208)
                      ++++|||++++ .+|+.+..|+..+....++.|+++||||+|+.+.+.+.   .+.++.+++.++++    ++++||++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 58999999999988776689999999999996644432   34455666667776    999999999


Q ss_pred             C-CHHHHHHHHHHHHHH
Q psy2518         172 I-NVNSIFRYLTTKCLS  187 (208)
Q Consensus       172 ~-~i~~~f~~i~~~~~~  187 (208)
                      . +++++++.+.+.+..
T Consensus       162 ~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          162 SDALAKLRKTIINESLN  178 (184)
T ss_dssp             CHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHhc
Confidence            7 999999998887754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.4e-30  Score=197.71  Aligned_cols=160  Identities=23%  Similarity=0.363  Sum_probs=141.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+.+|++. .....+.+++..+.+++|||+|++++...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4579999999999999  56888889999999999974 44666778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCC------------CCCHHHHHHHHHHhCC-eEEEEec
Q psy2518         103 ITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQS------------VVAPEEADLLSRALGC-RLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~e~Sa  168 (208)
                      +|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+.+            .+..+++..+++..++ ++++|||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            999999999999986 8988888766689999999999996543            6677888889998898 9999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKC  185 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~  185 (208)
                      ++|.|++++|+.+++.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999998765

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.95  E-value=1e-29  Score=191.89  Aligned_cols=162  Identities=16%  Similarity=0.166  Sum_probs=127.9

Q ss_pred             ccccceeeeEEEecCceEEE-EEEeeecCccccccccccccceeeEEEE--E-CCeEEEEEEEeCCChhhhcchh---Hh
Q psy2518          21 QEEFDAITKAYYRGAQACVI-TFSTIDRDSFEAAHSWKMKVSIKRTIKE--C-EGEEVRLMLWDTAGQEEFDAIT---KA   93 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk-~~~~~~~~~f~~~~~~t~~~~~~~~~~~--~-~~~~~~l~i~Dt~g~~~~~~~~---~~   93 (208)
                      ...-.+.+||+++|++++|| ++..++.+.|...  +|++.++..+.+.  + ++..+.+++|||+|+++|....   ..
T Consensus        14 ~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           14 LYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             ------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             CcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            34457789999999999999 4444455666655  5666565554444  3 3677899999999999998876   89


Q ss_pred             hhcCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-------CCCCCHHHHHHHHH----HhC
Q psy2518          94 YYRGAQACVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-------QSVVAPEEADLLSR----ALG  160 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-------~~~v~~~~~~~~~~----~~~  160 (208)
                      +++++|++++|||++++  +++..+..|+..+.+..++.|+++||||+|+.+       .+.+..+++..+++    ..+
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            99999999999999997  778888888888866666899999999999754       35666777888888    678


Q ss_pred             CeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         161 CRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       161 ~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ++|++|||++ .||+++|..+++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999998865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.95  E-value=1.7e-28  Score=185.68  Aligned_cols=153  Identities=14%  Similarity=0.181  Sum_probs=121.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|++++||  +++++..+.|. .+.||++..  ...+.+++  +.+++|||+|++.++.++..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            3467999999999999  46777777764 578888765  45667776  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----------------LGCRL  163 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  163 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+  .++.+++.+++..                 .++++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999999887653  3799999999999954  5778887777653                 23589


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ++|||++|.|++++|+++.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=2.4e-28  Score=197.92  Aligned_cols=163  Identities=21%  Similarity=0.362  Sum_probs=146.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ....+||+++|..++||  +++++..+.|...+.+|++ +.....+.+++..+.+++|||+|++.+...+..+++.+|++
T Consensus       152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~  230 (332)
T 2wkq_A          152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  230 (332)
T ss_dssp             HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred             ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence            34568999999999999  4677778889989999997 44567778899999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCC------------CCCCHHHHHHHHHHhCC-eEEEEe
Q psy2518         102 VITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQ------------SVVAPEEADLLSRALGC-RLMRTS  167 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~e~S  167 (208)
                      ++|||++++.+|+.+. .|+..+....++.|+++|+||+|+.+.            +.++.+++..+++..++ ++++||
T Consensus       231 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          231 LICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            9999999999999986 799888887778999999999998543            67899999999999998 999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~  187 (208)
                      |++|.|++++|+.+++.++.
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.95  E-value=7.1e-28  Score=181.24  Aligned_cols=165  Identities=26%  Similarity=0.462  Sum_probs=149.1

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCC
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGA   98 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   98 (208)
                      +++++..+|++++|++|+||  +++++....+...+.||++.++....+.+++..+.+++|||+|++++...+..+++.+
T Consensus        23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~  102 (191)
T 1oix_A           23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA  102 (191)
T ss_dssp             -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred             ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence            34567789999999999999  4677778888889999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          99 QACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        99 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +++++|||.++..+|+++..|+..+.+... +.|+++++||+|+.+.+.+..+++.+++...++.++++||+++.|++++
T Consensus       103 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l  182 (191)
T 1oix_A          103 VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA  182 (191)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999999889887766544 7899999999999877788899999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         178 FRYLTTKC  185 (208)
Q Consensus       178 f~~i~~~~  185 (208)
                      |+.+.+.+
T Consensus       183 ~~~l~~~i  190 (191)
T 1oix_A          183 FQTILTEI  190 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998765

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.95  E-value=3.7e-29  Score=182.91  Aligned_cols=153  Identities=14%  Similarity=0.208  Sum_probs=120.3

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  +++++..+.|.. +.||++.  ....+..  ..+.+++|||+|++.+..++..+++++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            5899999999999  467777777764 6788873  3344443  4577999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      |++++++|+.+..|+..+....  ++.|+++|+||+|+.+.  ...++.....     ...++++++|||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999998887643  37999999999999553  2223222211     1134579999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         179 RYLTTKCLS  187 (208)
Q Consensus       179 ~~i~~~~~~  187 (208)
                      +.+.+.+.+
T Consensus       154 ~~l~~~i~~  162 (164)
T 1r8s_A          154 DWLSNQLRN  162 (164)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHhh
Confidence            999987643

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.95  E-value=5e-28  Score=181.89  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=126.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|++++||  +++++..+.|. .+.||++..  ...+.+++  +.+.+|||+|++.++.++..+++.+|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            4567999999999999  46777777775 577888753  56667776  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH------------hCCeEEEEec
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA------------LGCRLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~e~Sa  168 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+  .++.+++.+.+..            .++++++|||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999998887643  3799999999999965  5677777665543            3458999999


Q ss_pred             CCCCCHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTK  184 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~  184 (208)
                      ++|.|++++|+.+.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=9.1e-28  Score=179.62  Aligned_cols=156  Identities=12%  Similarity=0.162  Sum_probs=125.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|..++||  +++++..+.|. .+.||+|..  ...+.+++  +.+.+|||+|++++..++..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            4579999999999999  46777778887 788898744  45555655  77999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+  ....++..+...     ..++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999999887763  4799999999999954  344555544432     235689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+.+++.+..
T Consensus       167 ~l~~~l~~~~~~  178 (187)
T 1zj6_A          167 QGLEWMMSRLKI  178 (187)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999987643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.95  E-value=1.6e-27  Score=178.75  Aligned_cols=157  Identities=14%  Similarity=0.154  Sum_probs=128.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      ....+||+++|..++||  +++++..+. |...+.+|++  +....+.+++  +.+.+|||+|++.+..++..+++++|+
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQA   93 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            45689999999999999  467777777 6778889987  4456666665  679999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCC
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKED  171 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~  171 (208)
                      +++|||++++.+|+.+..|+..+.+..    .+.|+++|+||+|+.+  ....++..+.+.     ..++++++|||++|
T Consensus        94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            999999999999999999998887653    3789999999999954  345566665553     23568999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCL  186 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~  186 (208)
                      .|++++|+.+.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             BTHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999988764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.95  E-value=1.4e-28  Score=185.25  Aligned_cols=155  Identities=13%  Similarity=0.192  Sum_probs=118.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|+.++||  +++++..+.|. .+.||++  +....+..+  .+.+.+|||+|++++..++..+++++|+++
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  101 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI  101 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4579999999999999  46777778876 4678887  334445554  477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHH-H----HHhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLL-S----RALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+.  ...++..+. .    ...++++++|||++|.|++
T Consensus       102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            9999999999999999998887643  37999999999999553  222322221 1    1224579999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCL  186 (208)
Q Consensus       176 ~~f~~i~~~~~  186 (208)
                      ++|+.+++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.95  E-value=9.6e-28  Score=178.93  Aligned_cols=156  Identities=15%  Similarity=0.213  Sum_probs=123.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|++++||  +++++..+.+ ..+.||+|.  ..+.+.++  .+.+++|||+|++.++..+..+++++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF--NIKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE--EEEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe--EEEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            4579999999999999  4566666644 567889883  34555665  467999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+.+  ..++..+..     ...++++++|||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence            9999999999999999988876542  379999999999996543  233332221     1234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+++++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (181)
T 1fzq_A          167 DGMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHHTC--
T ss_pred             HHHHHHHHHHHh
Confidence            999999987654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.95  E-value=7.2e-29  Score=185.97  Aligned_cols=157  Identities=20%  Similarity=0.235  Sum_probs=127.5

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      .+..+||+++|..++||  +++++..+.|...+.||++.++..  +  +...+.+.+|||+|++++..++..+++.+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            35689999999999999  567888899988899999866542  3  33457799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINV  174 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i  174 (208)
                      ++|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+.  ...++......     ..++++++|||++|.|+
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv  172 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNI  172 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCH
Confidence            99999999999999999998887642  47999999999999653  23333222111     23457999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCL  186 (208)
Q Consensus       175 ~~~f~~i~~~~~  186 (208)
                      +++|+.+++.+.
T Consensus       173 ~~l~~~l~~~~~  184 (188)
T 1zd9_A          173 DITLQWLIQHSK  184 (188)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.95  E-value=1.8e-28  Score=180.30  Aligned_cols=157  Identities=14%  Similarity=0.202  Sum_probs=125.3

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      .+..+||+++|..++||  +++++..+.|. .+.||++.  ....+.++  .+.+.+|||+|++.+...+..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   78 (171)
T 1upt_A            4 MTREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGF--NVETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV   78 (171)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSE--EEEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCcc--ceEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence            45679999999999999  46777677775 46788863  34555555  46799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHH-H----HHHhCCeEEEEecCCCCCH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADL-L----SRALGCRLMRTSVKEDINV  174 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i  174 (208)
                      ++|||++++.+|..+..|+..+.+..  .+.|+++|+||+|+.+..  ..++... +    +...++++++|||++|.|+
T Consensus        79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (171)
T 1upt_A           79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGL  156 (171)
T ss_dssp             EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence            99999999999999999988876653  379999999999996542  2222222 1    2233568999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLS  187 (208)
Q Consensus       175 ~~~f~~i~~~~~~  187 (208)
                      +++|+.+.+.+.+
T Consensus       157 ~~l~~~l~~~i~~  169 (171)
T 1upt_A          157 DEAMEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.95  E-value=1.8e-29  Score=202.84  Aligned_cols=155  Identities=13%  Similarity=0.138  Sum_probs=120.9

Q ss_pred             eEEEecCceEEE-E-EEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc---hhHhhhcCCcE
Q psy2518          29 KAYYRGAQACVI-T-FSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA---ITKAYYRGAQA  100 (208)
Q Consensus        29 ki~~vG~s~~gk-~-~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~---~~~~~~~~~d~  100 (208)
                      ||+++|++|+|| + +.++..+.+..   .+.||+|+++..    ++ ..++++||||+||++|+.   .++.||+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            799999999999 3 33333333322   367999987753    22 458899999999999974   46899999999


Q ss_pred             EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC-------CCCCHHHHHHHHHH----hCCeEEEEe
Q psy2518         101 CVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ-------SVVAPEEADLLSRA----LGCRLMRTS  167 (208)
Q Consensus       101 ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~~e~S  167 (208)
                      +++|||++++  ++++.+..|+..+.+..++.|++++|||+|+.++       |++..++++++++.    +++.|+|||
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            9999999998  3344444556666666668999999999999653       56778888888886    678999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q psy2518         168 VKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      |++ .||.++|..+++.++...
T Consensus       156 Akd-~nV~eAFs~iv~~li~~~  176 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIPEL  176 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSSTTH
T ss_pred             cCC-CcHHHHHHHHHHHHHhhH
Confidence            998 599999999998876443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.94  E-value=1.5e-27  Score=177.64  Aligned_cols=156  Identities=12%  Similarity=0.177  Sum_probs=125.4

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ......+||+++|..++||  +++++..+.| ..+.+|+|...  +.+.+++  +.+.+|||+|++++..++..+++++|
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCC
Confidence            3456689999999999999  5677878888 77889998553  4555655  77999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCC
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDI  172 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~  172 (208)
                      ++++|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+  ....++..+...     ..++++++|||++|.
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~  168 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGE  168 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT--CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc--CCCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence            9999999999999999999998887653  4899999999999955  234444444332     234589999999999


Q ss_pred             CHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTK  184 (208)
Q Consensus       173 ~i~~~f~~i~~~  184 (208)
                      |++++|+.+++.
T Consensus       169 gi~~l~~~l~~~  180 (181)
T 2h17_A          169 GLCQGLEWMMSR  180 (181)
T ss_dssp             THHHHHHHHHTC
T ss_pred             CHHHHHHHHHhh
Confidence            999999998754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.94  E-value=2.8e-28  Score=182.64  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=124.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|+.++||  +++++..+.+.. +.||++.  ....+.++  .+.+.+|||+|++++...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            4689999999999999  467777777764 6788873  34455555  467999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLL-----SRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++++|+.+..|+..+.+..  .+.|+++|+||+|+.+..  ..++....     +...++++++|||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999999988887653  379999999999996532  22322221     12234579999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+.+.+.+.+
T Consensus       173 ~l~~~l~~~i~~  184 (189)
T 2x77_A          173 EGMDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.94  E-value=9.1e-27  Score=173.81  Aligned_cols=156  Identities=13%  Similarity=0.153  Sum_probs=126.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|+.++||  +++++..+. ...+.||++.  ..+.+.++  .+.+++|||+|++++...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~--~~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGF--NIKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSE--EEEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCcc--ceEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            4689999999999999  467776676 7778899873  34555555  467999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++.+|+.+..|+..+.+..  .+.|+++|+||+|+.+.  ...++..+...     ..++++++|||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999998887652  37999999999999654  23333333221     235689999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+.+.+.+.+
T Consensus       169 ~l~~~l~~~i~~  180 (186)
T 1ksh_A          169 PGIDWLLDDISS  180 (186)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-28  Score=193.57  Aligned_cols=163  Identities=15%  Similarity=0.182  Sum_probs=130.3

Q ss_pred             ccccceeeeEEEecCc---------eEEE--EEEeeec---Ccccccccccc-ccceeeEEEE--------------ECC
Q psy2518          21 QEEFDAITKAYYRGAQ---------ACVI--TFSTIDR---DSFEAAHSWKM-KVSIKRTIKE--------------CEG   71 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s---------~~gk--~~~~~~~---~~f~~~~~~t~-~~~~~~~~~~--------------~~~   71 (208)
                      .......+||+++|++         ++||  +++++..   +.|...+.||+ +.++..+.+.              +++
T Consensus        13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   92 (255)
T 3c5h_A           13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC   92 (255)
T ss_dssp             TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred             CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence            4456788999999999         9999  5688888   67777888876 6776655443              567


Q ss_pred             eEEEEEEEe-----------------------CCChhhhcchhHhhhc---------------------CCcEEEEEEeC
Q psy2518          72 EEVRLMLWD-----------------------TAGQEEFDAITKAYYR---------------------GAQACVITFST  107 (208)
Q Consensus        72 ~~~~l~i~D-----------------------t~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~  107 (208)
                      ..+.++|||                       ++|+++|..++..+++                     +||++++|||+
T Consensus        93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~  172 (255)
T 3c5h_A           93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV  172 (255)
T ss_dssp             ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred             cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence            889999999                       7788888888888887                     79999999999


Q ss_pred             CCh--hhHHHHHHHHHHHHhh--cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         108 IDR--DSFEAAHSWKMKVENE--CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       108 ~~~--~s~~~~~~~~~~~~~~--~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      +++  .||+.+..|+..+.+.  ..+.|+++|+||+|+.+++.+  +++++++.. .++++++|||++|.|++++|+.++
T Consensus       173 t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~  250 (255)
T 3c5h_A          173 SRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV  250 (255)
T ss_dssp             BC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            998  9999999999988765  247999999999999665544  567778876 478999999999999999999998


Q ss_pred             HHH
Q psy2518         183 TKC  185 (208)
Q Consensus       183 ~~~  185 (208)
                      +.+
T Consensus       251 ~~l  253 (255)
T 3c5h_A          251 QLI  253 (255)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=6.7e-27  Score=173.87  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=124.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      +..+||+++|..++||  +++++..+.+ ..+.||+|..  ...+.+++  +.+.+|||+|++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4689999999999999  4677777777 6788898743  45555654  77999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----hCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----LGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++.+|+.+..|+..+.+..  .+.|+++|+||+|+.+.  ...++..+....     .++++++|||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999998887763  38999999999999553  344444433321     23479999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLSE  188 (208)
Q Consensus       176 ~~f~~i~~~~~~~  188 (208)
                      ++|+.+.+.+.++
T Consensus       169 ~l~~~l~~~~~~~  181 (183)
T 1moz_A          169 EGLDWLIDVIKEE  181 (183)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.92  E-value=6.6e-26  Score=166.44  Aligned_cols=151  Identities=14%  Similarity=0.170  Sum_probs=116.5

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc--
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR--   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~--   96 (208)
                      .+|++++|++|+||  +++++.+..+...+.|+.+.+.....+.+++  ..+++|||+|++.+.      .+...+++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            58999999999999  4677777776666667776677777777766  468999999998775      34466665  


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      ++|++++|+|.++.++   ...|+..+.+.  +.|+++|+||+|+.+.+.+.. +++++++.++++++++||++|.|+++
T Consensus        81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A           81 KPDLVVNIVDATALER---NLYLTLQLMEM--GANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             CCSEEEEEEETTCHHH---HHHHHHHHHHT--TCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred             CCCEEEEEecCCchhH---hHHHHHHHHhc--CCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence            8999999999998654   44577666553  689999999999865555543 46778888999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      +|+.+.+.+
T Consensus       155 l~~~l~~~~  163 (165)
T 2wji_A          155 LKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.92  E-value=1.1e-26  Score=177.32  Aligned_cols=156  Identities=12%  Similarity=0.125  Sum_probs=112.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe-EEEEEEEeCCChhhhcc-hhHhhhcCCcE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE-EVRLMLWDTAGQEEFDA-ITKAYYRGAQA  100 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~g~~~~~~-~~~~~~~~~d~  100 (208)
                      ...+||+++|++++||  ++.++..+.|.+.+.++. .++..  +.+++. .+.+++|||+|++++.. ++..+++++|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            5679999999999999  467888888988887654 34433  566654 68899999999999988 78899999999


Q ss_pred             EEEEEeCCChh-hHHHHHHHHHHH-Hhh---cCCCCEEEEEeCCCCCCCCCCCHHHHHH---------------------
Q psy2518         101 CVITFSTIDRD-SFEAAHSWKMKV-ENE---CGEIPTVLVQNKIDLLDQSVVAPEEADL---------------------  154 (208)
Q Consensus       101 ii~v~d~~~~~-s~~~~~~~~~~~-~~~---~~~~piivvgnK~Dl~~~~~v~~~~~~~---------------------  154 (208)
                      +++|||+++.. ++.....|+..+ ...   ..+.|+++|+||+|+.+.+.. .+....                     
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA-KLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH-HHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH-HHHHHHHHHHHHHHhccchhccccccC
Confidence            99999999854 466665544443 331   226899999999999654321 111111                     


Q ss_pred             --------------HHHHh---CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy2518         155 --------------LSRAL---GCRLMRTSVKED------INVNSIFRYLTTK  184 (208)
Q Consensus       155 --------------~~~~~---~~~~~e~Sa~~~------~~i~~~f~~i~~~  184 (208)
                                    ++...   +++|+||||++|      .||+++|+.+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          11111   568999999999      9999999998875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.92  E-value=9.2e-26  Score=181.69  Aligned_cols=157  Identities=15%  Similarity=0.203  Sum_probs=127.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecC--ccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhh-----cchhHhhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRD--SFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF-----DAITKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~--~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-----~~~~~~~~   95 (208)
                      ..+||+++|+.++||  +++++..+  .+. ..+.+|++.++..  +.+++ .+.+++|||+|++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            468999999999999  45665555  444 3577888766553  44444 688999999999998     77889999


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHH---HHHhhcCCCCEEEEEeCCCCCC--CCC----CCHHHHHHHHHHhC---CeE
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKM---KVENECGEIPTVLVQNKIDLLD--QSV----VAPEEADLLSRALG---CRL  163 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~~~~~~~piivvgnK~Dl~~--~~~----v~~~~~~~~~~~~~---~~~  163 (208)
                      +++|++++|||++++++|+++..|..   .+....++.|+++|+||+|+.+  ++.    +..+++.++++.+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999876644   4444455899999999999966  454    66788889999987   699


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ++|||++ .++.++|..+++.++
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTC
T ss_pred             EEeeecC-ChHHHHHHHHHHHHc
Confidence            9999999 899999999887654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.92  E-value=2.4e-26  Score=186.79  Aligned_cols=156  Identities=13%  Similarity=0.195  Sum_probs=118.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ...+||+++|..++||  +++++..+.|...+ ||++..+.  .+..  ..+.+.||||+|++.+..++..+++.+|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3567999999999999  46777788887654 78875433  3333  4477999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH-----HhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR-----ALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++.+|..+..|+..+.....  +.|+++|+||+|+.+..  ..++......     ..++++++|||++|.||+
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            99999999999999888877765543  79999999999996533  2232222211     123479999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLS  187 (208)
Q Consensus       176 ~~f~~i~~~~~~  187 (208)
                      ++|+.+++.+.+
T Consensus       316 el~~~l~~~l~~  327 (329)
T 3o47_A          316 EGLDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988743

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=1.9e-24  Score=166.70  Aligned_cols=163  Identities=9%  Similarity=0.014  Sum_probs=118.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh------hh----hcchhH
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ------EE----FDAITK   92 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~------~~----~~~~~~   92 (208)
                      ...+||+++|.+++||  +++++..+.|.....+....+.....+..++  +.+.+|||+|+      ++    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            3578999999999999  4677777777643333322233333334443  56899999998      43    222 33


Q ss_pred             hhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH---HHHHHHHHhC--CeEEE
Q psy2518          93 AYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE---EADLLSRALG--CRLMR  165 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~e  165 (208)
                      .++..+|++++|||++++.+|.  ....|+..+....++.|+++|+||+|+.+.+.+..+   ....++...+  +++++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            4578899999999999998875  234677777665457999999999999877777765   4566777776  79999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      |||++|.||+++|+.+++.+.+...
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=1e-24  Score=161.26  Aligned_cols=156  Identities=13%  Similarity=0.162  Sum_probs=122.1

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      .-....+||+++|..++||  +++++..+.|...+.++++.++....+.+++..  +.+|||+|++.+..++..+++.+|
T Consensus         3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d   80 (178)
T 2lkc_A            3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTD   80 (178)
T ss_dssp             TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCC
T ss_pred             CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCC
Confidence            3446789999999999999  567888889988888888888888888888765  679999999999999999999999


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-------C--CeEEEEe
Q psy2518         100 ACVITFSTIDR---DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-------G--CRLMRTS  167 (208)
Q Consensus       100 ~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~e~S  167 (208)
                      ++++|||++++   .+++.+    ..+..  .+.|+++|+||+|+.+.   ..++........       +  +++++||
T Consensus        81 ~~i~v~d~~~~~~~~~~~~l----~~~~~--~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  151 (178)
T 2lkc_A           81 IVILVVAADDGVMPQTVEAI----NHAKA--ANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLS  151 (178)
T ss_dssp             EEEEEEETTCCCCHHHHHHH----HHHGG--GSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred             EEEEEEECCCCCcHHHHHHH----HHHHh--CCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence            99999999984   444332    22222  27899999999999552   233333333222       2  4899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~~~  188 (208)
                      |++|.|++++|+.+++.+...
T Consensus       152 a~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          152 AKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHhhhhh
Confidence            999999999999999887653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=5.5e-25  Score=164.29  Aligned_cols=155  Identities=13%  Similarity=0.151  Sum_probs=122.8

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC-----------hhhhcchhHh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG-----------QEEFDAITKA   93 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~~~~~~~~~~   93 (208)
                      ++||+++|+.++||  +++++..+.|...+.|+++.+  ...+.++    .+.+|||+|           ++.+...+..
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   74 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH   74 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence            47999999999999  467888888888777766533  3444444    689999999           7888888888


Q ss_pred             hhcC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhh--cCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC
Q psy2518          94 YYRG-AQACVITFSTIDRDSFEAA-HSWKMK--------VENE--CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC  161 (208)
Q Consensus        94 ~~~~-~d~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~  161 (208)
                      +++. ++++++||++.+..++.++ ..|...        +...  ..+.|+++|+||+|+.+.+   .++++++++.+++
T Consensus        75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~  151 (190)
T 2cxx_A           75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV  151 (190)
T ss_dssp             HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred             HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence            8887 8988899999989999887 677652        2221  1379999999999996644   6778889998887


Q ss_pred             e-------EEEEecCCCCCHHHHHHHHHHHHHHHhh
Q psy2518         162 R-------LMRTSVKEDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       162 ~-------~~e~Sa~~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      +       +++|||++|.|++++|+.+++.+.+..+
T Consensus       152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  187 (190)
T 2cxx_A          152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG  187 (190)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred             hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence            4       7999999999999999999998865443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.90  E-value=2.8e-25  Score=191.27  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=126.4

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEE------EEE--CCeEEEEEEEeCCChhhhcchhH
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTI------KEC--EGEEVRLMLWDTAGQEEFDAITK   92 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~Dt~g~~~~~~~~~   92 (208)
                      .....+||+++|..++||  +++++..+.|...+.||+|.++..+.      +.+  ++..+.+.+|||+|++.+..+..
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            467789999999999999  57888899999999999998877552      222  34568899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI  172 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~  172 (208)
                      .+++.+|++++|||+++.   +.+..|+..+....++.|+++|+||+|+.+.+.+..+++++++...+++++++||++|.
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999999865   45677999998887789999999999998888888999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCLS  187 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~  187 (208)
                      ||+++|+.+.+.+..
T Consensus       194 gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          194 GVESIAKSLKSAVLH  208 (535)
T ss_dssp             -CTTHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999988754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.90  E-value=2.6e-24  Score=160.55  Aligned_cols=156  Identities=14%  Similarity=0.166  Sum_probs=124.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR   96 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~   96 (208)
                      ...+||+++|++|+||  +++++.+..+...+.|+++.+.....+.+++  +.+.+|||+|++.+.      .++..+++
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            4678999999999999  4677777777666777777777777777765  568999999998774      34566664


Q ss_pred             --CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518          97 --GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus        97 --~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i  174 (208)
                        .+|++++|+|.++   ++....|+..+...  +.|+++|+||+|+...+.+. +++.++++.++++++++||++|.|+
T Consensus        83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           83 NEKPDLVVNIVDATA---LERNLYLTLQLMEM--GANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HHCCSEEEEEEEGGG---HHHHHHHHHHHHTT--TCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             ccCCCEEEEEecchh---HHHHHHHHHHHHhc--CCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence              5999999999875   55666787777653  68999999999986655554 4567788889999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLSE  188 (208)
Q Consensus       175 ~~~f~~i~~~~~~~  188 (208)
                      +++|+.+++.+...
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.89  E-value=9.3e-24  Score=158.45  Aligned_cols=154  Identities=12%  Similarity=0.077  Sum_probs=108.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT   91 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~   91 (208)
                      ....+||+++|..++||  +++++..+.|...+.++.+..........++   .+.+|||+|          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34689999999999999  4677778888887888887666555555554   589999999          88888888


Q ss_pred             HhhhcCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--HHHHH-HHHHhCCeE
Q psy2518          92 KAYYRGA---QACVITFSTIDRDSFEAAH--SWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--EEADL-LSRALGCRL  163 (208)
Q Consensus        92 ~~~~~~~---d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~~~~~-~~~~~~~~~  163 (208)
                      ..+++.+   |++++|+|++++.++....  .|+..     .+.|+++|+||+|+.+.+.+..  +++.+ ++...++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  171 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL  171 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence            8888877   9999999999988877642  33322     3689999999999976544332  22222 222235699


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +++||++|.|++++|+.+.+.+
T Consensus       172 ~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          172 ILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHh
Confidence            9999999999999999998765

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.88  E-value=1.9e-23  Score=151.87  Aligned_cols=149  Identities=15%  Similarity=0.119  Sum_probs=105.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh-------hcchhHhhhc
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE-------FDAITKAYYR   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~-------~~~~~~~~~~   96 (208)
                      +.||+++|+.++||  +++++..+.+. ....++...+.....+..++.  .+.+|||+|++.       +...+..+++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            46899999999999  45666666543 223344444666677777775  578999999876       3455667889


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~  175 (208)
                      .+|++++|||.+++.+...  .|+....+. .+.|+++|+||+|+.+.    .+++.+++ ..++ +++++||++|.|++
T Consensus        79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~~~----~~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDPKH----ELYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSGGG----GGGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             hCCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccccc----hHhHHHHH-hCCCCCeEEEecccCCChH
Confidence            9999999999998655432  222222222 26899999999999653    23444555 6777 89999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         176 SIFRYLTTKC  185 (208)
Q Consensus       176 ~~f~~i~~~~  185 (208)
                      ++|+.+++.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.88  E-value=8.3e-24  Score=156.38  Aligned_cols=151  Identities=16%  Similarity=0.132  Sum_probs=110.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch--------hHhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI--------TKAY   94 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~--------~~~~   94 (208)
                      ..+||+++|.+++||  +++++....+. ....++.+.++....+.+++..  +.+|||+|++.+...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence            357999999999999  45666665542 1223344457777888888755  789999998643211        1246


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      ++.+|++++|||.+++.+++. ..|+..+.+... +.|+++|+||+|+.++..       .++...+.++++|||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            899999999999999988764 467777766654 799999999999854211       12223466899999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCL  186 (208)
Q Consensus       174 i~~~f~~i~~~~~  186 (208)
                      ++++|+.+.+.+.
T Consensus       153 v~~l~~~l~~~~~  165 (172)
T 2gj8_A          153 VDVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.87  E-value=1.7e-22  Score=162.09  Aligned_cols=133  Identities=17%  Similarity=0.202  Sum_probs=110.8

Q ss_pred             EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHH
Q psy2518          41 TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHS  118 (208)
Q Consensus        41 ~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~  118 (208)
                      ++.++..+.|. +.|.||+| +.+...+..++   +++||||  +++|+.+++.+++++|++++|||++++. +++.+..
T Consensus        33 l~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~  106 (301)
T 1u0l_A           33 RILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK  106 (301)
T ss_dssp             EEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred             EEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence            44677799999 89999999 44444433333   6899999  9999999999999999999999999997 7898999


Q ss_pred             HHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHH
Q psy2518         119 WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       119 ~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      |+..+..  .+.|+++|+||+||.+++.+  +++++++..++  +++++|||++|.|++++|..+..
T Consensus       107 ~l~~~~~--~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g  169 (301)
T 1u0l_A          107 FLVLAEK--NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG  169 (301)
T ss_dssp             HHHHHHH--TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred             HHHHHHH--CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence            9987765  37999999999999654432  45777888887  89999999999999999987754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.87  E-value=1.9e-22  Score=158.56  Aligned_cols=154  Identities=14%  Similarity=0.139  Sum_probs=119.5

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhh-
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYY-   95 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~-   95 (208)
                      .+.+||+++|..++||  +++++.+..+.....|++.++.....+..++  +.+.+|||||+..+..      +.+.++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            4578999999999999  4677777777655556555555555554444  6799999999987765      235565 


Q ss_pred             -cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518          96 -RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus        96 -~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i  174 (208)
                       ..+|++++|+|.++.++..   .|..++...  +.|+++|+||+|+.+.+.+.. ++.++++.++++++++||++|.|+
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence             5899999999999876543   466665543  799999999999966555553 467889999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCL  186 (208)
Q Consensus       175 ~~~f~~i~~~~~  186 (208)
                      +++|+.+.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.86  E-value=4.6e-22  Score=148.85  Aligned_cols=161  Identities=13%  Similarity=0.121  Sum_probs=116.8

Q ss_pred             eccCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC----------h
Q psy2518          17 DTAGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------Q   84 (208)
Q Consensus        17 d~~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~   84 (208)
                      ...++......+||+++|+.++||  +++++..+. ...+.++.+..........+.   .+.+|||+|          +
T Consensus        13 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~   88 (195)
T 3pqc_A           13 RTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKER   88 (195)
T ss_dssp             CSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHH
T ss_pred             cChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhH
Confidence            333444556788999999999999  456666666 344566666554444444443   477999999          7


Q ss_pred             hhhcchhHhhhcCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHHHHHHH
Q psy2518          85 EEFDAITKAYYRGA---QACVITFSTIDRDSF--EAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEADLLSR  157 (208)
Q Consensus        85 ~~~~~~~~~~~~~~---d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~~~~~~  157 (208)
                      +.+..++..+++.+   |++++|+|.++..+.  ..+..|+...     +.|+++|+||+|+.+.  +....+++.+++.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~  163 (195)
T 3pqc_A           89 MLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFS  163 (195)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHh
Confidence            88888888888776   999999999876443  3334454432     6899999999998543  2333455566666


Q ss_pred             HhC-CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         158 ALG-CRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       158 ~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ..+ +++++|||++|.|++++|+.+.+.+.
T Consensus       164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          164 KYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             hcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            544 59999999999999999999988764

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.86  E-value=1.6e-22  Score=165.20  Aligned_cols=142  Identities=14%  Similarity=0.108  Sum_probs=108.7

Q ss_pred             cCccccccccccccceee---------EEEEECC----eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC-----
Q psy2518          47 RDSFEAAHSWKMKVSIKR---------TIKECEG----EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI-----  108 (208)
Q Consensus        47 ~~~f~~~~~~t~~~~~~~---------~~~~~~~----~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~-----  108 (208)
                      ...|.+.|.||++..+..         ..+.+++    ..+.++||||+|++++++++..++++++++|+|||++     
T Consensus       143 ~ri~~~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~  222 (354)
T 2xtz_A          143 KRLSDINYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQT  222 (354)
T ss_dssp             HHHHSTTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCB
T ss_pred             HHHhcCCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccc
Confidence            344567788887643322         2233455    6899999999999999999999999999999999998     


Q ss_pred             -----ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCC--C-------------------CHHHHHHHHHH--
Q psy2518         109 -----DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSV--V-------------------APEEADLLSRA--  158 (208)
Q Consensus       109 -----~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~--v-------------------~~~~~~~~~~~--  158 (208)
                           +..+|++...|+..+.+..  ++.|++|+|||+|+.+++.  +                   +.+++.+++.+  
T Consensus       223 l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f  302 (354)
T 2xtz_A          223 LFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKF  302 (354)
T ss_dssp             CSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHH
Confidence                 7889999999999887653  4899999999999854322  2                   14667777543  


Q ss_pred             --------------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         159 --------------LGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       159 --------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                                    ..+.+++|||+++.||+++|..+.+.++..
T Consensus       303 ~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~~  346 (354)
T 2xtz_A          303 EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRR  346 (354)
T ss_dssp             HHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHHH
Confidence                          123568999999999999999999988754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=6.2e-22  Score=161.71  Aligned_cols=129  Identities=16%  Similarity=0.168  Sum_probs=106.3

Q ss_pred             cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy2518          56 WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVEN  125 (208)
Q Consensus        56 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~  125 (208)
                      ||+|+.  ...+.++  .+.+++|||+|++.+++.|..++++++++|+|||+++          ..++.+...|+..+.+
T Consensus       179 ~T~Gi~--~~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~  254 (353)
T 1cip_A          179 KTTGIV--ETHFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN  254 (353)
T ss_dssp             CCCSEE--EEEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             ceeceE--EEEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc
Confidence            455533  2334444  5789999999999999999999999999999999999          5679999999998877


Q ss_pred             hc--CCCCEEEEEeCCCCCCCC---------------CCCHHHHHHHHHH-----------hCCeEEEEecCCCCCHHHH
Q psy2518         126 EC--GEIPTVLVQNKIDLLDQS---------------VVAPEEADLLSRA-----------LGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       126 ~~--~~~piivvgnK~Dl~~~~---------------~v~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ..  .+.|++|++||+|+.+++               .++.+++..++..           .++.+++|||+++.||.++
T Consensus       255 ~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~v  334 (353)
T 1cip_A          255 NKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFV  334 (353)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHH
T ss_pred             CccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHH
Confidence            53  379999999999985322               4678889888873           4568999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         178 FRYLTTKCLSE  188 (208)
Q Consensus       178 f~~i~~~~~~~  188 (208)
                      |..+.+.++..
T Consensus       335 F~~v~~~i~~~  345 (353)
T 1cip_A          335 FDAVTDVIIKN  345 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=2.6e-22  Score=158.83  Aligned_cols=151  Identities=17%  Similarity=0.186  Sum_probs=113.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc------chhHhhhc-
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------AITKAYYR-   96 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~~~~-   96 (208)
                      ..+||+++|..++||  +++++.+..+.....|.+  .+..+...++. .+.+.+|||||++.+.      .+.+.++. 
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~--tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~   78 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGV--TVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS   78 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCC--CCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCC--cEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence            368999999999999  467776655333333433  33344445555 6679999999998775      45566776 


Q ss_pred             -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          97 -GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        97 -~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                       .+|++++|+|.++.+++   ..|..++..  .+.|+++|+||+|+.+.+.+. .++..+++.++++++++||++|.|++
T Consensus        79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           79 QRADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             TCCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence             69999999999987654   346555554  278999999999986555554 45677888999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         176 SIFRYLTTKC  185 (208)
Q Consensus       176 ~~f~~i~~~~  185 (208)
                      ++|+.+++.+
T Consensus       153 el~~~i~~~~  162 (272)
T 3b1v_A          153 QVVKKAAHTT  162 (272)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=5.2e-23  Score=157.25  Aligned_cols=141  Identities=11%  Similarity=0.103  Sum_probs=108.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC-
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG-   97 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~-   97 (208)
                      ....+||+++|..++||  +++++..+.|..   .+.||++.++         ..+.+.+|||+|++.++..+..+++. 
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            45689999999999999  467777777665   4667766544         44568999999999999888888887 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCCCC------HHHHHHHHHHhCCe
Q psy2518          98 ---AQACVITFSTI-DRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSVVA------PEEADLLSRALGCR  162 (208)
Q Consensus        98 ---~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~  162 (208)
                         +|++++|||.+ ++++|..+..|+..+....     .+.|+++|+||+|+.+.+.+.      .+++..++...+++
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               99999999999 8899999989988876542     379999999999997765544      55677788888889


Q ss_pred             EEEEecCCCCC
Q psy2518         163 LMRTSVKEDIN  173 (208)
Q Consensus       163 ~~e~Sa~~~~~  173 (208)
                      ++++||++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999999875

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.85  E-value=3.7e-22  Score=156.65  Aligned_cols=149  Identities=15%  Similarity=0.143  Sum_probs=117.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----------hhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----------ITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----------~~~~~~   95 (208)
                      .+|+++|..++||  +++++.+..+.....|+++++.....+.+++.  .+.+|||||...+..          +.+.++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            5899999999999  46777777776666777777888888888776  689999999877654          456677


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          96 --RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        96 --~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                        ..+|++++|+|.++.+++..+..|+   ...  +.|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~g  153 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIG  153 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBS
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCC
Confidence              8999999999999977665544333   222  689999999999865444332 24557888899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTK  184 (208)
Q Consensus       174 i~~~f~~i~~~  184 (208)
                      ++++|+.+.+.
T Consensus       154 i~el~~~i~~~  164 (256)
T 3iby_A          154 IPALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.84  E-value=1.1e-21  Score=158.37  Aligned_cols=141  Identities=12%  Similarity=0.072  Sum_probs=112.4

Q ss_pred             eeecCccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC--------
Q psy2518          44 TIDRDSFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI--------  108 (208)
Q Consensus        44 ~~~~~~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~--------  108 (208)
                      |+....|.++       +.||+|+.  ...+.++  .+.+++|||+|++++++.|..|+++++++|+|||++        
T Consensus       134 Ri~~~~Y~PT~~Dilr~r~~TiGi~--~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d  209 (327)
T 3ohm_A          134 RVADPSYLPTQQDVLRVRVPTTGII--EYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVE  209 (327)
T ss_dssp             HHHSTTCCCCHHHHTTCCCCCCSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSS
T ss_pred             HHhccCCCccccchhcccCceeeEE--EEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccc
Confidence            4445566655       56778743  3334444  478999999999999999999999999999999665        


Q ss_pred             --ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCC----------------CCCHHHHHHHHH----------H
Q psy2518         109 --DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQS----------------VVAPEEADLLSR----------A  158 (208)
Q Consensus       109 --~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~----------------~v~~~~~~~~~~----------~  158 (208)
                        +..++.+...|+..+.+..  .+.|++++|||+|+.+++                .++.+++.+++.          .
T Consensus       210 ~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~  289 (327)
T 3ohm_A          210 SDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSD  289 (327)
T ss_dssp             CTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTT
T ss_pred             cccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccccc
Confidence              6678888888888887653  379999999999985543                578888888843          3


Q ss_pred             hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         159 LGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       159 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      .++.+++|||+++.||+++|..+.+.+++.
T Consensus       290 ~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          290 KIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             SCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999998764

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.84  E-value=6.7e-21  Score=157.46  Aligned_cols=123  Identities=18%  Similarity=0.185  Sum_probs=99.9

Q ss_pred             EEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCE
Q psy2518          65 TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVENEC--GEIPT  132 (208)
Q Consensus        65 ~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~--~~~pi  132 (208)
                      +.+.+++  +.++||||+|++++++.|..++++++++|+|||+++          ..+|+++..|+..+.+..  .+.|+
T Consensus       210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi  287 (402)
T 1azs_C          210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV  287 (402)
T ss_dssp             EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred             EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence            3445554  789999999999999999999999999999999999          899999999999988753  38999


Q ss_pred             EEEEeCCCCCCCCC---C---------------------------CHHHHHHHHH-----H--------hCCeEEEEecC
Q psy2518         133 VLVQNKIDLLDQSV---V---------------------------APEEADLLSR-----A--------LGCRLMRTSVK  169 (208)
Q Consensus       133 ivvgnK~Dl~~~~~---v---------------------------~~~~~~~~~~-----~--------~~~~~~e~Sa~  169 (208)
                      +|+|||+||.+++.   +                           ..+++..++.     .        .++.+++|||+
T Consensus       288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~  367 (402)
T 1azs_C          288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV  367 (402)
T ss_dssp             EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred             EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence            99999999854332   2                           1355666542     2        24567899999


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q psy2518         170 EDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~~~  189 (208)
                      ++.||+++|..+.+.++...
T Consensus       368 d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          368 DTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHHHHHHH
Confidence            99999999999988877553

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.84  E-value=2.4e-21  Score=148.32  Aligned_cols=166  Identities=8%  Similarity=-0.036  Sum_probs=111.1

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCC----------hhhh
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAG----------QEEF   87 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g----------~~~~   87 (208)
                      +-.....+||+++|.+++||  +++++..+.+.....++.|.........+. .....+.||||+|          ++.+
T Consensus        23 ~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~  102 (223)
T 4dhe_A           23 DLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHW  102 (223)
T ss_dssp             GSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHH
T ss_pred             hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHH
Confidence            33345678999999999999  467776666433334444433334444444 4456789999999          5666


Q ss_pred             cchhHhhhcC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHH----
Q psy2518          88 DAITKAYYRG---AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEEADLLSRA----  158 (208)
Q Consensus        88 ~~~~~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~----  158 (208)
                      ..+...+++.   +|++++|+|.+++.+.. ...|+..+..  .+.|+++|+||+|+.+.+...  .+...+....    
T Consensus       103 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          103 EQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            7777777766   78899999999864432 2344444444  268999999999985532221  1112222222    


Q ss_pred             ---hCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         159 ---LGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       159 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                         .+.+++++||++|.|++++|+.+.+.+....
T Consensus       180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  213 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA  213 (223)
T ss_dssp             TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred             ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence               3458999999999999999999998876543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.83  E-value=3.2e-21  Score=152.50  Aligned_cols=154  Identities=17%  Similarity=0.162  Sum_probs=121.4

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc------hhHhhh--
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------ITKAYY--   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------~~~~~~--   95 (208)
                      ..+||+++|..|+||  +++++.+..+.....|+++++.....+.+++..  +.+|||||+..+..      ..+.++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999  467777887766777888878877777777765  89999999987766      566666  


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      ..+|++++|+|.++.+.   ...|..++.... ..|+++|+||+|+.+.+.+..+ ...+++.++++++++||++|.|++
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEME-VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT-CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhcC-CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence            68999999999998642   333444444431 3899999999998554434333 677888899999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCL  186 (208)
Q Consensus       176 ~~f~~i~~~~~  186 (208)
                      ++|+.+.+.+.
T Consensus       155 ~l~~~i~~~~~  165 (271)
T 3k53_A          155 ELKRMIALMAE  165 (271)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.83  E-value=1.2e-20  Score=151.83  Aligned_cols=162  Identities=12%  Similarity=0.079  Sum_probs=122.2

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCcccccc-ccccccceeeEEEEECCeEEEEEEEeCCChhhh----------c
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAH-SWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----------D   88 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----------~   88 (208)
                      ......-.|.++|..++||  +++++.+..+.... .+....+.....+..+ ...++.+|||||+..+          .
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            4456678899999999999  46777777765321 1111112222223332 2567899999998443          3


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRT  166 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~  166 (208)
                      .....+++.+|++++|+|++++.++.....|+..+...  +.|+++|+||+|+.+.+....+....++..++  .+++++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v  161 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI  161 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence            56677899999999999999999998888888877763  68999999999997445666777788888875  689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ||++|.|++++|+.+.+.+.
T Consensus       162 SA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          162 SALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             BTTTTBSHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.83  E-value=3.9e-21  Score=161.59  Aligned_cols=159  Identities=10%  Similarity=0.057  Sum_probs=116.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~~~   91 (208)
                      ...+||+++|.+++||  +++++.++.+. ....++.+.+.....+.+++..  +.||||+|+          +.|..+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence            3569999999999999  46777777664 2333444457777778888765  899999998          6666554


Q ss_pred             H-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-HHH----hCCeEEE
Q psy2518          92 K-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-SRA----LGCRLMR  165 (208)
Q Consensus        92 ~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-~~~----~~~~~~e  165 (208)
                      . .+++.+|++++|+|++++.++++. .|+..+..  .+.|+++|+||+|+.+++.+..++..+. ...    .++++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            4 478899999999999999888876 57666654  3789999999999977666554444332 232    3579999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +||++|.|++++|+.+.+.+...
T Consensus       328 ~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          328 MSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998887643

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=6.2e-21  Score=161.23  Aligned_cols=159  Identities=10%  Similarity=0.070  Sum_probs=119.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCC----------hhhhcchh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG----------QEEFDAIT   91 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g----------~~~~~~~~   91 (208)
                      ...+|++++|..++||  +++++.... +.....++.+.+.....+..++.  .+.||||+|          +++|..+.
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4578999999999999  456666543 33334455556777777888776  589999999          78887766


Q ss_pred             Hh-hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCeEEE
Q psy2518          92 KA-YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-----GCRLMR  165 (208)
Q Consensus        92 ~~-~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~e  165 (208)
                      .. +++.+|++++|+|.++..+.. ...|...+..  .+.|+++|+||+|+.+.+.+..+++.+.+++.     ++++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            64 789999999999999864433 2345554444  36899999999999877777778877777765     579999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +||++|.|++++|+.+.+.+...
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHHh
Confidence            99999999999999999877554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.82  E-value=1.7e-21  Score=154.41  Aligned_cols=153  Identities=14%  Similarity=0.117  Sum_probs=116.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----------hhHh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----------ITKA   93 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----------~~~~   93 (208)
                      ..++|+++|..++||  +++++.+..+.....|++.++.....+..++..  +.+|||||+..+..          ..+.
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence            468999999999999  577777777766677777777777777776654  68899999877662          2333


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          94 YY--RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        94 ~~--~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ++  +.+|++++|+|.++.++...+..|   +...  +.|+++|+||+|+.+.+.+. .....+++.++++++++||++|
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~--~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL--GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH--TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc--CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCC
Confidence            33  799999999999987665444333   3333  68999999999985543332 2346688889999999999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCL  186 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~  186 (208)
                      .|++++|+.+.+.+.
T Consensus       154 ~gi~el~~~i~~~~~  168 (274)
T 3i8s_A          154 RGIEALKLAIDRYKA  168 (274)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999877653

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.82  E-value=1.6e-20  Score=153.90  Aligned_cols=129  Identities=14%  Similarity=0.114  Sum_probs=98.3

Q ss_pred             cccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHh
Q psy2518          56 WKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID----------RDSFEAAHSWKMKVEN  125 (208)
Q Consensus        56 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~s~~~~~~~~~~~~~  125 (208)
                      +|+|++.  ..+.++  .+.+++|||+|++.++..|..++++++++|+|||+++          ..++.+...|+..+.+
T Consensus       187 ~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~  262 (362)
T 1zcb_A          187 PTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN  262 (362)
T ss_dssp             CCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred             CccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence            4455432  344444  4789999999999999999999999999999999999          7799999999998876


Q ss_pred             hc--CCCCEEEEEeCCCCCCCC----------------CCCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHH
Q psy2518         126 EC--GEIPTVLVQNKIDLLDQS----------------VVAPEEADLLSR-----------ALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       126 ~~--~~~piivvgnK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~~  176 (208)
                      ..  .+.|+++++||+|+.+++                .++.+++..++.           ..++.+++|||+++.||++
T Consensus       263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~  342 (362)
T 1zcb_A          263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL  342 (362)
T ss_dssp             CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred             chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence            53  379999999999985322                377888888762           3456889999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLSE  188 (208)
Q Consensus       177 ~f~~i~~~~~~~  188 (208)
                      +|..+.+.++..
T Consensus       343 vF~~v~~~i~~~  354 (362)
T 1zcb_A          343 VFRDVKDTILHD  354 (362)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=1.5e-20  Score=152.19  Aligned_cols=141  Identities=9%  Similarity=0.111  Sum_probs=110.0

Q ss_pred             EeeecCccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCC-------
Q psy2518          43 STIDRDSFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTI-------  108 (208)
Q Consensus        43 ~~~~~~~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~-------  108 (208)
                      .|+....|.++       +.+|+|+..  ..+.+  +.+.+++|||+|++++++.|..++++++++|+|||++       
T Consensus       127 ~Ri~~~~Y~PT~~Dil~~~~~TiGi~~--~~~~~--~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~  202 (340)
T 4fid_A          127 KRIAMEDYVPTEEDLIHNRTKTTGIHE--YDFVV--KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLY  202 (340)
T ss_dssp             HHHSSTTCCCCHHHHHHSCCCCCSCEE--EEEES--SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC
T ss_pred             HHHhcccCCccccceeecccceeeeEE--EEEEe--eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccc
Confidence            34445566665       667787543  23333  4578999999999999999999999999999999998       


Q ss_pred             ---ChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCC---------------CCCHHHHHHHHHH-h--------
Q psy2518         109 ---DRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQS---------------VVAPEEADLLSRA-L--------  159 (208)
Q Consensus       109 ---~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~---------------~v~~~~~~~~~~~-~--------  159 (208)
                         +..++.+...|+..+.+..  .+.|++|+|||+|+.+++               ....+++.+++.. +        
T Consensus       203 e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~  282 (340)
T 4fid_A          203 EDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEE  282 (340)
T ss_dssp             --CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhh
Confidence               7888999988988887653  379999999999984321               1246666555433 2        


Q ss_pred             ------------------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         160 ------------------GCRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       160 ------------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                                        ++.++++||+++.||..+|..+.+.++.
T Consensus       283 ~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          283 MNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             SCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHHH
Confidence                              3578999999999999999999999887

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.80  E-value=1.2e-20  Score=157.31  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=113.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-------hHh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-------TKA   93 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-------~~~   93 (208)
                      ....++|+++|..++||  +++++....+. ....++...+...+.+.+.+.. .+.+|||+|++.+..+       ...
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~  109 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR  109 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence            35678999999999999  45777777663 2233444456667777776553 6899999999877654       345


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      +++.+|++++|+|.+..+.   ...|+..+.+.  +.|+++|+||+|+.+.+..  +.++++++.++++++++||++|.|
T Consensus       110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT--TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc--CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence            7899999999999943333   35566666655  7899999999999765544  666777777889999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCLS  187 (208)
Q Consensus       174 i~~~f~~i~~~~~~  187 (208)
                      ++++|+.+.+.+..
T Consensus       183 I~eL~~~L~~~l~~  196 (423)
T 3qq5_A          183 FDDIGKTISEILPG  196 (423)
T ss_dssp             TTTHHHHHHHHSCC
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999988743

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.80  E-value=3.1e-20  Score=157.22  Aligned_cols=155  Identities=11%  Similarity=-0.003  Sum_probs=97.7

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh--------
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT--------   91 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--------   91 (208)
                      ..+..+||+++|..++||  +++++....+ .....++...+.....+.+++.  .+.+|||+|+..+...+        
T Consensus       229 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~  306 (476)
T 3gee_A          229 IVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRS  306 (476)
T ss_dssp             HHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC-------------------
T ss_pred             hhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHH
Confidence            345678999999999999  4566666542 2233344445777777888775  58999999997765433        


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHH---HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAA---HSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV  168 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  168 (208)
                      ..+++.+|++++|+|.+++.+++.+   ..|+..+    .+.|+++|+||+|+.+.+..   ..+.+......+++++||
T Consensus       307 ~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSA  379 (476)
T 3gee_A          307 RMKMAEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISA  379 (476)
T ss_dssp             -CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBT
T ss_pred             HhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEE
Confidence            3468899999999999999888543   3344333    26899999999999664432   223344432468999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~  186 (208)
                      ++|.|++++|+.+.+.+.
T Consensus       380 ktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          380 LNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TTTBSHHHHHHHHTHHHH
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998775

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.79  E-value=5e-19  Score=145.17  Aligned_cols=160  Identities=15%  Similarity=0.089  Sum_probs=115.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc---------chhHh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD---------AITKA   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~---------~~~~~   93 (208)
                      ...++++++|.+|+||  +++++....+.....+....+.....+..+  ...+.+|||+|.....         .....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            3568999999999999  355555555432222222122333333333  3568999999975431         11223


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          94 YYRGAQACVITFSTIDRD--SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      +...+|++++|+|++++.  +++....|+..+....++.|+++|+||+|+.+...  .+++.+++...+++++++||++|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g  320 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG  320 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence            455799999999999887  78888889988887665799999999999965332  24466677778889999999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCLSE  188 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~~~  188 (208)
                      .|++++|+.+.+.+...
T Consensus       321 ~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999987654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.77  E-value=5.2e-19  Score=149.86  Aligned_cols=153  Identities=11%  Similarity=0.050  Sum_probs=113.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChh-hhcc--------hhH
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-EFDA--------ITK   92 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~~~~--------~~~   92 (208)
                      +..+||+++|..++||  +++++....+. ....|+...+.....+.+++.+  +.+|||+|.. .+..        ...
T Consensus       241 r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~  318 (482)
T 1xzp_A          241 NRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTL  318 (482)
T ss_dssp             HHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHH
T ss_pred             cCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHH
Confidence            3458999999999999  45666666432 2223334457777888888765  7999999987 5432        234


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI  172 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~  172 (208)
                      .+++.+|++++|+|.+++.+++... ++..+    .+.|+++|+||+|+.+.  +..++..+++. .+++++++||++|.
T Consensus       319 ~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~  390 (482)
T 1xzp_A          319 QEIEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGE  390 (482)
T ss_dssp             HHHHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTC
T ss_pred             HHhhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCC
Confidence            6789999999999999988886643 33332    36899999999999642  45555554432 34689999999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTTKCLS  187 (208)
Q Consensus       173 ~i~~~f~~i~~~~~~  187 (208)
                      |++++|+.+.+.+..
T Consensus       391 Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          391 GLEKLEESIYRETQE  405 (482)
T ss_dssp             CHHHHHHHHHHHTHH
T ss_pred             CHHHHHHHHHHHHhh
Confidence            999999999987653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=8.3e-19  Score=147.55  Aligned_cols=151  Identities=17%  Similarity=0.179  Sum_probs=103.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhh---------hcchhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE---------FDAITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~---------~~~~~~~~~   95 (208)
                      -+|+++|..++||  +++++.++.+. ....|+++.+.....+.+++..  +.+|||+|.+.         +......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence            3799999999999  57888777643 2334455557777788888875  68999999764         344567789


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH-HHHHHHhCC-eEEEEecCCCCC
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA-DLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      +.||++++|+|.+++.+..+  .|+..+.+.. +.|+++|+||+|+.+.  . ..+. .++. .+++ +++++||++|.|
T Consensus        80 ~~ad~il~V~D~~~~~~~~d--~~i~~~l~~~-~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~g  152 (439)
T 1mky_A           80 READLVLFVVDGKRGITKED--ESLADFLRKS-TVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNIN  152 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHH--HHHHHHHHHH-TCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBS
T ss_pred             HhCCEEEEEEECCCCCCHHH--HHHHHHHHHc-CCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCC
Confidence            99999999999988655533  2222222222 6899999999998431  1 1222 3343 4677 799999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKCLS  187 (208)
Q Consensus       174 i~~~f~~i~~~~~~  187 (208)
                      ++++|+.+.+.+..
T Consensus       153 v~~L~~~i~~~l~~  166 (439)
T 1mky_A          153 LDTMLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999988764

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.76  E-value=3.2e-18  Score=148.22  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=108.6

Q ss_pred             eeeeEEEecCceEEEE--EEeeecC--cc---------ccc--cccccccceeeEEEEE-----CCeEEEEEEEeCCChh
Q psy2518          26 AITKAYYRGAQACVIT--FSTIDRD--SF---------EAA--HSWKMKVSIKRTIKEC-----EGEEVRLMLWDTAGQE   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk~--~~~~~~~--~f---------~~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~g~~   85 (208)
                      +..+++++|..++||+  +.+++..  .+         .+.  ...+.|+.+......+     ++..+.++||||||++
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            4789999999999993  3333321  11         111  1112333333333332     5678999999999999


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---e
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---R  162 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~  162 (208)
                      .|......+++.+|++++|+|.++..+++....|......   +.|+++++||+|+.+.+  ..+...++...+++   +
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence            9999999999999999999999998888877777765543   68999999999996532  34445667777776   4


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         163 LMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       163 ~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ++++||++|.|++++|+.+.+.+.
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             EEEeecccCCCchhHHHHHhhcCC
Confidence            999999999999999999988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.76  E-value=7.4e-19  Score=140.90  Aligned_cols=152  Identities=15%  Similarity=0.053  Sum_probs=105.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhh--------hcchhHhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FDAITKAY   94 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~~~~~~~   94 (208)
                      +..+|+++|.+++||  +++++....+... ..|....+.....+.  ....++.+|||||...        +......+
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            456799999999999  4677777777532 222111122222222  2346799999999765        45566778


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-C-CeEEEEecCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWK-MKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-G-CRLMRTSVKED  171 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~e~Sa~~~  171 (208)
                      ++.+|++++|+|++++.+..  ..|+ ..+.+..++.|+++|+||+|+.+.+.    ...+.+..+ + .+++++||++|
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g  157 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDE  157 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCC
Confidence            99999999999999875544  3454 44554434789999999999854322    022333332 3 37999999999


Q ss_pred             CCHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKC  185 (208)
Q Consensus       172 ~~i~~~f~~i~~~~  185 (208)
                      .|++++|+.+.+.+
T Consensus       158 ~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          158 RQVAELKADLLALM  171 (301)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHhc
Confidence            99999999988765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.76  E-value=4e-19  Score=144.59  Aligned_cols=153  Identities=13%  Similarity=0.150  Sum_probs=112.4

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccc-cccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhhhc--
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFE-AAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAYYR--   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~~~--   96 (208)
                      +.+|.++|.+++||  +++++....+. ..|. +|+..  ....+.+++. ..+.+|||+|...    +..+...+++  
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p--~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i  234 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVP--NLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHI  234 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCC--CEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHH
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCc--eEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHH
Confidence            45788999999999  34555444332 2232 33322  2233455442 3689999999754    3345566655  


Q ss_pred             -CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC--CeEEEEe
Q psy2518          97 -GAQACVITFSTID---RDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG--CRLMRTS  167 (208)
Q Consensus        97 -~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S  167 (208)
                       .++++++|+|+++   +++++.+..|+.++..+.+   +.|+++|+||+|+.+.    .+..+++++.++  .+++++|
T Consensus       235 ~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iS  310 (342)
T 1lnz_A          235 ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPIS  310 (342)
T ss_dssp             HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCS
T ss_pred             HhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEE
Confidence             4999999999998   7899999999999987653   7999999999998542    245666777776  6899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       168 a~~~~~i~~~f~~i~~~~~  186 (208)
                      |+++.|++++|+.+.+.+.
T Consensus       311 A~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          311 AVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             SCCSSTTHHHHHHHHHHHT
T ss_pred             CCCCcCHHHHHHHHHHHHh
Confidence            9999999999999988874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.74  E-value=7.1e-18  Score=130.76  Aligned_cols=163  Identities=15%  Similarity=0.100  Sum_probs=106.0

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCcccccccc--ccccceeeEEEEECCeEEEEEEEeCCC-----------h
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSW--KMKVSIKRTIKECEGEEVRLMLWDTAG-----------Q   84 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~g-----------~   84 (208)
                      .+..-...+||+++|.+|+||  +++++.+..+.....+  +++.+.....+.+++.  .+.||||||           .
T Consensus        22 ~~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~   99 (239)
T 3lxx_A           22 RQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETS   99 (239)
T ss_dssp             ------CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHH
T ss_pred             cCCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHH
Confidence            344556789999999999999  4677777777665555  4444555556666665  479999999           3


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCC------HHHHHHH
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVA------PEEADLL  155 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~------~~~~~~~  155 (208)
                      +.+......+++++|++|+|+|+++....  ...|+..+.+..+   ..|+++|+||+|+.+.+.+.      .+..+.+
T Consensus       100 ~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l  177 (239)
T 3lxx_A          100 KEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL  177 (239)
T ss_dssp             HHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence            45555566667889999999999764442  1233333332221   46999999999986544433      2467778


Q ss_pred             HHHhCCeEEEEecCCC-----CCHHHHHHHHHHHHH
Q psy2518         156 SRALGCRLMRTSVKED-----INVNSIFRYLTTKCL  186 (208)
Q Consensus       156 ~~~~~~~~~e~Sa~~~-----~~i~~~f~~i~~~~~  186 (208)
                      ++..+..|+.+++..+     .++.++|..+.+.+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~  213 (239)
T 3lxx_A          178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVR  213 (239)
T ss_dssp             HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHH
Confidence            8888888888877754     688889888776654

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=6e-20  Score=150.77  Aligned_cols=161  Identities=12%  Similarity=0.091  Sum_probs=93.7

Q ss_pred             ceeeeEEEecCceEEE--EEEe-eecCcccccc--------ccccccceeeEEEEECCeEEEEEEEeCCCh-------hh
Q psy2518          25 DAITKAYYRGAQACVI--TFST-IDRDSFEAAH--------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-------EE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~-~~~~~f~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-------~~   86 (208)
                      ...++|+++|.+|+||  ++++ +..+.|...+        .+|++.+.....+..++..+.+.+|||+|.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999  3444 2334454443        267766655555666788889999999999       77


Q ss_pred             hcchhH-------hhhcCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518          87 FDAITK-------AYYRGAQAC-----------VITFSTID-RDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSV  146 (208)
Q Consensus        87 ~~~~~~-------~~~~~~d~i-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~  146 (208)
                      +..+..       .+++.++++           +++|++++ ..++..+. .|+..+   ....|+|+|+||+|+...+.
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            777766       666655443           46666665 55666554 444443   24789999999999966544


Q ss_pred             CCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHHh
Q psy2518         147 VAP--EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSEL  189 (208)
Q Consensus       147 v~~--~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~  189 (208)
                      +..  +++.+++..++++++++||++|.+ ++.|..+.+.+....
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i  235 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASI  235 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence            443  466667777789999999999999 999999988886544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.74  E-value=1.1e-17  Score=139.50  Aligned_cols=157  Identities=14%  Similarity=0.112  Sum_probs=101.9

Q ss_pred             ceeeeEEEecCceEEE--EEEeee---cCcccccccc--ccccceeeEEEEE-------------C--C----eEEEEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTID---RDSFEAAHSW--KMKVSIKRTIKEC-------------E--G----EEVRLML   78 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i   78 (208)
                      ...++|.++|..++||  ++.++.   .+.+.+++.+  |++..+....+..             +  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            4578999999999999  334443   3445555555  6665554443322             1  2    2378999


Q ss_pred             EeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHH
Q psy2518          79 WDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEA  152 (208)
Q Consensus        79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~  152 (208)
                      |||||++.|.......++.+|++++|+|+++    +++++.+..|    . .....|+++++||+|+.+...  ...+++
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i  160 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----E-ILGIDKIIIVQNKIDLVDEKQAEENYEQI  160 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----H-HTTCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----H-HcCCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence            9999999998777777788999999999995    4555554433    1 222458999999999965433  234556


Q ss_pred             HHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         153 DLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       153 ~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .++++..   +++++++||++|.|++++|+.+.+.+.
T Consensus       161 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          161 KEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6666542   568999999999999999999887654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.73  E-value=9.2e-18  Score=145.20  Aligned_cols=157  Identities=15%  Similarity=0.174  Sum_probs=111.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--ccc---------ccc--cccccccee--eEEEEE---CCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFE---------AAH--SWKMKVSIK--RTIKEC---EGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~---------~~~--~~t~~~~~~--~~~~~~---~~~~~~l~i~Dt~g~   84 (208)
                      ....++.++|..++||  ++.+++..  .+.         +..  ....|+.+.  ...+.+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            4578999999999999  23443321  111         100  001122221  122222   567899999999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC---
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC---  161 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~---  161 (208)
                      +.|......+++.+|++++|+|.++..+++....|......   +.|+++++||+|+...+  ..+...++...+++   
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~  158 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---DLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPE  158 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CCCEEEEEeccCccccC--HHHHHHHHHHhhCCCcc
Confidence            99998888999999999999999999888888777665543   68999999999996532  33445566666676   


Q ss_pred             eEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         162 RLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       162 ~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +++++||++|.|++++|+.+++.+.
T Consensus       159 ~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          159 EAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             GCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cEEEEEeecCCCchHHHHHHHHhcc
Confidence            4899999999999999999988764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.73  E-value=6.6e-19  Score=148.56  Aligned_cols=154  Identities=14%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchh--------
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAIT--------   91 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~--------   91 (208)
                      ..+..+||+++|..++||  +++++....+. ....++.+.++....+.+++.+  +.+|||+|...+....        
T Consensus       220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~  297 (462)
T 3geh_A          220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERS  297 (462)
T ss_dssp             HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC-------------------
T ss_pred             hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHH
Confidence            345678999999999999  45666655443 2333555557777777888865  6999999986654332        


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCC
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKED  171 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~  171 (208)
                      ..+++.+|++++|+|.+++.+... ..|+..+.    ..|+++|+||+|+...+.+.  ....+.  .+.+++++||++|
T Consensus       298 ~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg  368 (462)
T 3geh_A          298 RQAANTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK  368 (462)
T ss_dssp             -CCCCSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred             hhhhhcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence            235789999999999999877654 44555443    47999999999996644432  111111  3468999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCLS  187 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~~  187 (208)
                      .|++++|+.+.+.+..
T Consensus       369 ~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          369 QGIDSLETAILEIVQT  384 (462)
T ss_dssp             BSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999987653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.72  E-value=4.9e-18  Score=133.24  Aligned_cols=166  Identities=14%  Similarity=0.095  Sum_probs=105.4

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCc-cccccccc-cccceeeEEEEECCeEEEEEEEeCCChhhhcc------
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWK-MKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA------   89 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------   89 (208)
                      ++..-...++|+++|.+++||  +++++.... |...+.++ +..+.....+..++.  .+.||||||+..+..      
T Consensus        15 ~~~~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~   92 (260)
T 2xtp_A           15 GQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALY   92 (260)
T ss_dssp             ------CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHH
T ss_pred             CCCCCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHH
Confidence            334445679999999999999  456666665 55555554 444555555566654  589999999865432      


Q ss_pred             -----hhHhhhcCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCEEEEE-eCCCCCCCCCCCH-------HHHHHH
Q psy2518          90 -----ITKAYYRGAQACVITFSTIDRDSF-EAAHSWKMKVENECGEIPTVLVQ-NKIDLLDQSVVAP-------EEADLL  155 (208)
Q Consensus        90 -----~~~~~~~~~d~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~piivvg-nK~Dl~~~~~v~~-------~~~~~~  155 (208)
                           ....+++.+|++++|+|+++.... ..+..|+..........|.+++. ||+|+.+. .+..       +++..+
T Consensus        93 ~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           93 KEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHH
Confidence                 223367899999999999862222 22233444332211134555555 59999642 2222       334456


Q ss_pred             HHHhCCe---E--EEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         156 SRALGCR---L--MRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       156 ~~~~~~~---~--~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +...+..   +  +++||++|.|++++|..+.+.+...
T Consensus       172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            6666543   2  7899999999999999999887653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.72  E-value=3.2e-18  Score=145.58  Aligned_cols=153  Identities=12%  Similarity=0.033  Sum_probs=97.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--ccccccc---------------------------cccccceeeEEEEECCeE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAHS---------------------------WKMKVSIKRTIKECEGEE   73 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~~---------------------------~t~~~~~~~~~~~~~~~~   73 (208)
                      ...+||+++|..++||  ++.+++..  .+.+.+.                           ...|+.+......++...
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4579999999999999  34444333  2221111                           111333333444455556


Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHH-----HHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAA-----HSWKMKVENECGEIPTVLVQNKIDLLDQSVVA  148 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~-----~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~  148 (208)
                      +.+.||||||+++|......+++.+|++++|+|+++..++..+     ..+...+.......|+++|+||+|+.+.++..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            7899999999999999999999999999999999997654321     11222222223346799999999996533333


Q ss_pred             HHHHHH----HHHHh-----CCeEEEEecCCCCCHHHH
Q psy2518         149 PEEADL----LSRAL-----GCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       149 ~~~~~~----~~~~~-----~~~~~e~Sa~~~~~i~~~  177 (208)
                      .++..+    +....     +++++++||++|.|++++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            333332    33333     357999999999999864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.72  E-value=7.2e-19  Score=147.81  Aligned_cols=151  Identities=14%  Similarity=0.093  Sum_probs=97.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh--------hhcchhHhhhc
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE--------EFDAITKAYYR   96 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~--------~~~~~~~~~~~   96 (208)
                      ..+|+++|..++||  +++++.+..+. ...++.|+...............+.+|||+|++        .+......+++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            46899999999999  46777666553 234444443333333333333468999999985        66677788899


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINVN  175 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~  175 (208)
                      .||++++|+|.+++.++..  .|+..+.+. .+.|+++|+||+|+.+.+.    +..++. .+++ +++++||++|.|+.
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~  153 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLG  153 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChH
Confidence            9999999999998777653  344443332 2789999999999854321    111222 3566 78999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCL  186 (208)
Q Consensus       176 ~~f~~i~~~~~  186 (208)
                      ++|+.+.+.+.
T Consensus       154 ~L~~~i~~~l~  164 (436)
T 2hjg_A          154 DLLDAVAEHFK  164 (436)
T ss_dssp             HHHHHHHHTGG
T ss_pred             HHHHHHHHhcC
Confidence            99999988764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.71  E-value=3.5e-17  Score=137.66  Aligned_cols=159  Identities=16%  Similarity=0.063  Sum_probs=105.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhhcch-----------
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-----------   90 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----------   90 (208)
                      ...+|++++|.+|+||  +++++.+..+. ....|+.+.+.....+.++|..  +.+|||+|..++...           
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~  255 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNY  255 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHH
Confidence            3468999999999999  45666665542 1222333345566777888875  689999997543321           


Q ss_pred             h-HhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH-HHHH----hCCeEE
Q psy2518          91 T-KAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL-LSRA----LGCRLM  164 (208)
Q Consensus        91 ~-~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~-~~~~----~~~~~~  164 (208)
                      . ..+++.+|++++|+|.++..+.+.. .+...+..  .+.|+++|+||+|+.+.+....++..+ +...    .+++++
T Consensus       256 ~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          256 RVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            1 2467889999999999987776543 22222222  268999999999997655444444332 2232    246899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ++||++|.|++++|+.+.+.+...
T Consensus       333 ~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998876543

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.71  E-value=1.6e-17  Score=141.00  Aligned_cols=156  Identities=12%  Similarity=0.047  Sum_probs=106.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCc-------cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHh
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDS-------FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKA   93 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~-------f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~   93 (208)
                      .....++|.++|..++||  ++.++....       +..+..+.+.++.....+.+++  ..+.+|||||++.|......
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            345689999999999999  345554444       3334444333344444455555  56999999999999888888


Q ss_pred             hhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHHHHHh----CCeEE
Q psy2518          94 YYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLLSRAL----GCRLM  164 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~~~~~----~~~~~  164 (208)
                      .++.+|++++|+|+++   +++++.+.    .+..  .+.|+++++||+|+.++.  ....++..+++...    +.+++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii  166 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSII  166 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEE
Confidence            9999999999999998   55555443    2222  257889999999985421  11123344555544    56899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ++||++|.|++++++.+.+.+.
T Consensus       167 ~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          167 PISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCHHHHHHHHHHhhc
Confidence            9999999999999999988775

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.70  E-value=9.4e-17  Score=133.64  Aligned_cols=163  Identities=10%  Similarity=0.021  Sum_probs=108.8

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccc---cccccccccc------------eeeEEEEE---CCeEEEEEEEeCC
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVS------------IKRTIKEC---EGEEVRLMLWDTA   82 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~------------~~~~~~~~---~~~~~~l~i~Dt~   82 (208)
                      ..+..+||.++|..++||  +++++......   .....+++..            ........   ......+.+||||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            346689999999999999  34444332111   1111111100            00000000   1234789999999


Q ss_pred             ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHHh-
Q psy2518          83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEEADLLSRAL-  159 (208)
Q Consensus        83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~~-  159 (208)
                      |++.|.......++.+|++++|+|.++..++.....|+..+.... ..|+++++||+|+.+.....  .++..++.... 
T Consensus        84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~-~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~  162 (403)
T 3sjy_A           84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG-VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTW  162 (403)
T ss_dssp             CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT-CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTST
T ss_pred             CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC-CCCEEEEEECccccchHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999877777777776655442 36899999999985422110  11122222221 


Q ss_pred             --CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         160 --GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       160 --~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                        +++++++||++|.|++++|+.+.+.+.
T Consensus       163 ~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          163 AENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence              568999999999999999999887654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.70  E-value=1.9e-18  Score=129.17  Aligned_cols=114  Identities=11%  Similarity=0.135  Sum_probs=85.4

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCcccc---ccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcC-
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEA---AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRG-   97 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~-   97 (208)
                      ....+||+++|.+|+||  +++++....+..   .+.++++.++         ..+.+.+|||+|++.+...+..+++. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35678999999999999  456666666654   3444544332         44578999999999998888888776 


Q ss_pred             ---CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc-----CCCCEEEEEeCCCCCCCCC
Q psy2518          98 ---AQACVITFSTI-DRDSFEAAHSWKMKVENEC-----GEIPTVLVQNKIDLLDQSV  146 (208)
Q Consensus        98 ---~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~piivvgnK~Dl~~~~~  146 (208)
                         +|++++|||++ ++.++..+..|+..+....     .+.|+++|+||+|+.+.+.
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 8999999988887776542     3799999999999966543

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.69  E-value=2.5e-18  Score=136.09  Aligned_cols=158  Identities=10%  Similarity=0.125  Sum_probs=90.9

Q ss_pred             ceeeeEEEecCceEEE--EEEe-eecCcccccc-------ccccccceeeEEEEECCeEEEEEEEeCCChh-------hh
Q psy2518          25 DAITKAYYRGAQACVI--TFST-IDRDSFEAAH-------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-------EF   87 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~-~~~~~f~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-------~~   87 (208)
                      ...++|+++|.+|+||  ++++ +..+.+...+       .+|++.+.....+..++..+.+.+|||||..       .+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            3468999999999999  3444 4456666666       7888888777777777888899999999972       22


Q ss_pred             cchh-------Hhhhc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518          88 DAIT-------KAYYR-------------GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV  147 (208)
Q Consensus        88 ~~~~-------~~~~~-------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v  147 (208)
                      ..+.       ..++.             .+|+++++++.+...-...-..++..+..   ..|+++|+||+|+......
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence            2222       33333             37899999987653222222334444444   6899999999998432211


Q ss_pred             C--HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         148 A--PEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       148 ~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      .  .+...+.....+++++++||+++.|++++++.+.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1  1233444556788999999999999999998887654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.69  E-value=1.8e-16  Score=130.06  Aligned_cols=157  Identities=15%  Similarity=0.106  Sum_probs=105.1

Q ss_pred             eee-EEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh---------hhhcchhHhh
Q psy2518          27 ITK-AYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ---------EEFDAITKAY   94 (208)
Q Consensus        27 ~~k-i~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~---------~~~~~~~~~~   94 (208)
                      .++ |.++|.+++||  +++++.+..+.....+....+.....+.+++.  .+.+|||+|.         +.|.... ..
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence            456 99999999999  45666565553322222233566777888884  4789999996         2343332 35


Q ss_pred             hcCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhc-CCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHHh---CCeEEEE
Q psy2518          95 YRGAQACVITFSTIDRD--SFEAAHSWKMKVENEC-GEIPTVLVQNKIDLLDQSVVA--PEEADLLSRAL---GCRLMRT  166 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~~---~~~~~e~  166 (208)
                      +..+|++++|+|++++.  +...+..|...+.... .+.|+++|+||+|+.+.. ..  .+.+..++...   +.+++++
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            78999999999999877  5666666665555443 378999999999985432 11  11233344555   2378999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      ||+++.|++++++.+.+.+..
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHhcc
Confidence            999999999999999887654

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.69  E-value=1.8e-19  Score=154.08  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=114.6

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+..+|+++|..++||  +++++....+...+.++++.++....+..++. ..+.||||||++.|..++..+++.+|+++
T Consensus         2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g-~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSG-EKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCS-SCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCC-CEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            3567899999999999  46777778887777787777766665555322 25899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC--CCCHHHHHHH---HHHh--CCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS--VVAPEEADLL---SRAL--GCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~--~v~~~~~~~~---~~~~--~~~~~e~Sa~~~~~i~  175 (208)
                      +|+|.++....+....| ..+..  .+.|+++++||+|+.+.+  .+..+ ...+   +..+  .++++++||++|.|++
T Consensus        81 LVVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~  156 (537)
T 3izy_P           81 LVVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMM  156 (537)
T ss_dssp             EECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred             EEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHH-HHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence            99999987665544333 22222  168999999999986422  12211 1111   1112  2479999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         176 SIFRYLTTKC  185 (208)
Q Consensus       176 ~~f~~i~~~~  185 (208)
                      ++|+.+...+
T Consensus       157 eLle~I~~l~  166 (537)
T 3izy_P          157 ALAEATIALA  166 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHhh
Confidence            9999988765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.68  E-value=9.5e-17  Score=133.89  Aligned_cols=157  Identities=13%  Similarity=0.115  Sum_probs=107.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeee---cCcccccccc--ccccceeeEEEEE-------------C--C----eEEEEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTID---RDSFEAAHSW--KMKVSIKRTIKEC-------------E--G----EEVRLML   78 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~---~~~f~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i   78 (208)
                      ...++|.++|..++||  ++.++.   .+.+.+++.+  |++..+....+..             +  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            5679999999999999  344444   3455556556  6655544433321             1  1    1378999


Q ss_pred             EeCCChhhhcchhHhhhcCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--CCHHHH
Q psy2518          79 WDTAGQEEFDAITKAYYRGAQACVITFSTID----RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--VAPEEA  152 (208)
Q Consensus        79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v~~~~~  152 (208)
                      |||||++.|.......++.+|++++|+|+++    +++.+.+..|.    . ....|+++++||+|+.+...  ...++.
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~----~-~~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ----I-IGQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH----H-HTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH----H-cCCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            9999999998777777888999999999995    44555544331    1 22468999999999855321  112333


Q ss_pred             HHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         153 DLLSRA---LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       153 ~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .++++.   .+++++++||++|.|++++++.+.+.+.
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            444443   3568999999999999999999887654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.68  E-value=3.7e-17  Score=140.01  Aligned_cols=117  Identities=10%  Similarity=0.047  Sum_probs=81.8

Q ss_pred             cceeeeEEEecCceEEE--EEEeee------------------cCccccccc--cccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTID------------------RDSFEAAHS--WKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~------------------~~~f~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      ..+..+|+++|..++||  ++.+++                  ...+.+...  ...|+.+......+....+.++||||
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT   89 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT   89 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence            45678999999999999  344442                  111111111  01222333333444444567999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      ||++.|......+++.+|++++|+|.++..+.+....|.. +...  +.|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~~--~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRLR--HTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHTT--TCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHHc--CCCEEEEEeCCCCcc
Confidence            9999999999999999999999999999877777665543 3322  689999999999854

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.67  E-value=6.7e-17  Score=135.82  Aligned_cols=152  Identities=16%  Similarity=0.125  Sum_probs=101.3

Q ss_pred             cceeeeEEEecCceEEE--EEEeee-------------------------------cCccccccccccccceeeEEEEEC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTID-------------------------------RDSFEAAHSWKMKVSIKRTIKECE   70 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~-------------------------------~~~f~~~~~~t~~~~~~~~~~~~~   70 (208)
                      -...++|+++|..++||  ++.+++                               .+.+.++..+.++++.....+..+
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35678999999999999  334441                               122333334445555555555444


Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS---FE---AAHSWKMKVENECGEIP-TVLVQNKIDLLD  143 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~  143 (208)
                      +  ..+.||||||+++|.......++.+|++++|+|.++...   |+   ...+.+..+.. . ..| +++++||+|+..
T Consensus        94 ~--~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~-~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 K--KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-A-GVKHLIVLINKMDDPT  169 (439)
T ss_pred             C--eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-c-CCCeEEEEeecCCCcc
Confidence            4  479999999999999988889999999999999998532   22   11222222221 1 466 999999999843


Q ss_pred             CC------CCCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy2518         144 QS------VVAPEEADLLSRALG------CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       144 ~~------~v~~~~~~~~~~~~~------~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ..      ....++...+++..+      ++++++||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            11      111233444555554      4699999999999999766

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.66  E-value=1.4e-17  Score=140.73  Aligned_cols=155  Identities=14%  Similarity=0.087  Sum_probs=100.3

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCC--------hhhhcchhH
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAG--------QEEFDAITK   92 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g--------~~~~~~~~~   92 (208)
                      ..+...+|+++|.+++||  +++++....+. ....+.|+.........+.....+.+|||+|        ++.+.....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            345678999999999999  46666666654 2344555555555555655556799999999        788888889


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCC
Q psy2518          93 AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKED  171 (208)
Q Consensus        93 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~  171 (208)
                      .+++.+|++|+|+|..+..+.  ...|+....+. .+.|+++|+||+|+.+.+    +...++ ...++ ..+++||++|
T Consensus        98 ~~~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~-~~~pvilV~NK~D~~~~~----~~~~e~-~~lg~~~~~~iSA~~g  169 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVTA--ADEEVAKILYR-TKKPVVLAVNKLDNTEMR----ANIYDF-YSLGFGEPYPISGTHG  169 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSCH--HHHHHHHHHTT-CCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTC
T ss_pred             hhHhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH-cCCCEEEEEECccchhhh----hhHHHH-HHcCCCceEEeecccc
Confidence            999999999999998764333  33455444433 378999999999985421    111111 12344 6789999999


Q ss_pred             CCHHHHHHHHHHHHH
Q psy2518         172 INVNSIFRYLTTKCL  186 (208)
Q Consensus       172 ~~i~~~f~~i~~~~~  186 (208)
                      .|+.++|+.+.+.+.
T Consensus       170 ~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          170 LGLGDLLDAVAEHFK  184 (456)
T ss_dssp             TTHHHHHHHHHTTGG
T ss_pred             cchHHHHHHHHhhcc
Confidence            999999999887653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.65  E-value=1.3e-17  Score=140.14  Aligned_cols=152  Identities=14%  Similarity=0.142  Sum_probs=102.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--cccccc-----------------------------ccccccceeeEEEEECC
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFEAAH-----------------------------SWKMKVSIKRTIKECEG   71 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~~~-----------------------------~~t~~~~~~~~~~~~~~   71 (208)
                      ...++|+++|..++||  ++.+++.+  .+.+.+                             .+.+.++....  .++.
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~--~~~~   81 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFM--RFET   81 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------C--EEEC
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEE--EEec
Confidence            3568999999999999  34555432  332211                             11122222222  3344


Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc------CCCCEEEEEeCCCCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC------GEIPTVLVQNKIDLLDQS  145 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~------~~~piivvgnK~Dl~~~~  145 (208)
                      ....+.||||||+++|......+++.+|++++|+|+++ .+|+....|..+..++.      +-.|+++++||+|+.+..
T Consensus        82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~  160 (435)
T 1jny_A           82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP  160 (435)
T ss_dssp             SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence            45679999999999999988899999999999999998 78886655544433322      234689999999996521


Q ss_pred             ------CCCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy2518         146 ------VVAPEEADLLSRALG-----CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       146 ------~v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~  179 (208)
                            ....++..++++..+     ++++++||++|.|+.+++.
T Consensus       161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence                  112345666777666     5799999999999987654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.64  E-value=4.6e-17  Score=135.56  Aligned_cols=146  Identities=12%  Similarity=0.094  Sum_probs=100.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--------ccccc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--------SFEAA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF   87 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--------~f~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~   87 (208)
                      ...++|.++|..++||  ++.++...        .|...       ...+.|+.+......++.....+.||||||++.|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            4579999999999999  34444331        22110       1123333333444555555567899999999999


Q ss_pred             cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC---
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG---  160 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~---  160 (208)
                      .......++.+|++++|+|.++....+ ..+|+..+...  +.| +++++||+|+.+...   ...++..++++.++   
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  165 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  165 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence            888888999999999999999875443 34555554433  577 899999999864211   11234555666665   


Q ss_pred             --CeEEEEecCCCCC
Q psy2518         161 --CRLMRTSVKEDIN  173 (208)
Q Consensus       161 --~~~~e~Sa~~~~~  173 (208)
                        ++++++||++|.|
T Consensus       166 ~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          166 DEVPVIRGSALLALE  180 (405)
T ss_dssp             TTSCEEECCHHHHHH
T ss_pred             cCCCEEEccHHHhhh
Confidence              5899999999987

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.62  E-value=2.3e-16  Score=129.79  Aligned_cols=145  Identities=4%  Similarity=-0.024  Sum_probs=103.0

Q ss_pred             eEEEecCceEEE-E-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI-T-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk-~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      +|.++|..++|| + +.++.      ++..|++..+  ..+..+  ...+.||||||+++|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~--~~~~~~--~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM--YNNDKE--GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEE--EEECSS--SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE--EEEecC--CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            999999999999 2 34333      4455664333  333333  3469999999999998877888899999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCE-EEEEe-CCCCCCCCCCCH--HHHHHHHHHhC---CeEEE--EecCC---CCCH
Q psy2518         107 TIDRDSFEAAHSWKMKVENECGEIPT-VLVQN-KIDLLDQSVVAP--EEADLLSRALG---CRLMR--TSVKE---DINV  174 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgn-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e--~Sa~~---~~~i  174 (208)
                       + ...+....+|+..+...  ..|. +++.| |+|+ +.+.+..  ++..++++..+   +++++  +||++   +.|+
T Consensus        93 -~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           93 -P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             -T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             -C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence             4 34455556666555443  5676 88888 9998 4322221  34444444443   58999  99999   9999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKCLSE  188 (208)
Q Consensus       175 ~~~f~~i~~~~~~~  188 (208)
                      +++++.+.+.+...
T Consensus       168 ~~L~~~l~~~~~~~  181 (370)
T 2elf_A          168 DELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc
Confidence            99999998886543

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.62  E-value=1.5e-16  Score=127.50  Aligned_cols=153  Identities=12%  Similarity=0.140  Sum_probs=100.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChh-h--------hcchhHhh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE-E--------FDAITKAY   94 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~-~--------~~~~~~~~   94 (208)
                      ..+|.++|..++||  +++++.+..+... ..+....+.....+..+  ..++.+|||||.. .        +......+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            44799999999999  4566666655421 11211112122223333  4578999999987 2        33344567


Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDIN  173 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~  173 (208)
                      ++.+|++++|+|.++   +.....|+...... .+.|+++++||+|+...+....+...+++..+++ .++++||++|.|
T Consensus        86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~-~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~  161 (301)
T 1ega_A           86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE-GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  161 (301)
T ss_dssp             CCCEEEEEEEEETTC---CCHHHHHHHHHHHS-SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh-cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCC
Confidence            889999999999977   32333444333321 2689999999999854222223444555555676 799999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2518         174 VNSIFRYLTTKC  185 (208)
Q Consensus       174 i~~~f~~i~~~~  185 (208)
                      ++++++.+.+.+
T Consensus       162 v~~l~~~i~~~l  173 (301)
T 1ega_A          162 VDTIAAIVRKHL  173 (301)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999988654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.62  E-value=2e-16  Score=132.86  Aligned_cols=155  Identities=13%  Similarity=0.069  Sum_probs=99.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCc---cccc---------cccccc-------------------cceeeEEEEEC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDS---FEAA---------HSWKMK-------------------VSIKRTIKECE   70 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~---f~~~---------~~~t~~-------------------~~~~~~~~~~~   70 (208)
                      -...++|+++|..++||  ++.++..+.   +...         ..+|.+                   +........+.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            35679999999999999  344443332   1110         112211                   11111122233


Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC--C-
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV--V-  147 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~--v-  147 (208)
                      .....+.||||||++.|......+++.+|++++|+|+++....+ ...|+..+... ...|+++|+||+|+.+...  . 
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCCcccHHHHH
Confidence            34467899999999999888888999999999999999865333 33444433322 2346899999999965211  1 


Q ss_pred             -CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHHH
Q psy2518         148 -APEEADLLSRALG-----CRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       148 -~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~~  180 (208)
                       ..++..++++.++     ++++++||++|.|+.++|..
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence             1344556667777     58999999999999986543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.62  E-value=6.4e-16  Score=133.90  Aligned_cols=157  Identities=15%  Similarity=0.059  Sum_probs=103.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccc----cccccccceeeEEE------------EECCeEEEEEEEeCCChhhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAA----HSWKMKVSIKRTIK------------ECEGEEVRLMLWDTAGQEEF   87 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~Dt~g~~~~   87 (208)
                      +..+|.++|..++||  ++.++....+.+.    ..+++|..+.....            .++.....++||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            457899999999999  3455544444332    22344422221100            00111225899999999999


Q ss_pred             cchhHhhhcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC-------------HH-
Q psy2518          88 DAITKAYYRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA-------------PE-  150 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~-------------~~-  150 (208)
                      ..++...++.+|++++|+|+++   +++++.+..+    ..  .+.|+++++||+|+.......             .. 
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l----~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v  157 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV  157 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHH----HH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHH----HH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence            9999989999999999999999   7777665432    22  268999999999985421110             10 


Q ss_pred             ---------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         151 ---------EADLLSRALG---------------CRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       151 ---------~~~~~~~~~~---------------~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                               +......+.+               ++++++||++|.|++++++.+...+...
T Consensus       158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~  219 (594)
T 1g7s_A          158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence                     0111111122               2799999999999999999998877543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.61  E-value=2.6e-16  Score=130.71  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=102.6

Q ss_pred             eeeEEEecCceEEE--EEEeeecC-------cccc-----------ccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRD-------SFEA-----------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~-------~f~~-----------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      .+||.++|..++||  ++.++...       .|..           +...|++    .....++.....+.||||||++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~----~~~~~~~~~~~~~~iiDtpG~~~   78 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITIN----AAHVEYSTAARHYAHTDCPGHAD   78 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEE----CEEEEEECSSCEEEEEECSSHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEE----eeeEEeccCCeEEEEEECCChHH
Confidence            58999999999999  33444332       1111           1122332    22334444456789999999999


Q ss_pred             hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC--
Q psy2518          87 FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG--  160 (208)
Q Consensus        87 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~--  160 (208)
                      |.......++.+|++++|+|.++....+....| ..+...  +.| +++++||+|+.+...   ...++..++++.++  
T Consensus        79 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  155 (397)
T 1d2e_A           79 YVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK  155 (397)
T ss_dssp             HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence            988888889999999999999986544433333 333322  577 789999999864211   11245566777666  


Q ss_pred             ---CeEEEEecCCCCC----------HHHHHHHHHHHH
Q psy2518         161 ---CRLMRTSVKEDIN----------VNSIFRYLTTKC  185 (208)
Q Consensus       161 ---~~~~e~Sa~~~~~----------i~~~f~~i~~~~  185 (208)
                         ++++++||++|.|          +.++++.+.+.+
T Consensus       156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence               5899999999775          788888776654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.61  E-value=4.1e-17  Score=130.23  Aligned_cols=163  Identities=14%  Similarity=0.068  Sum_probs=104.3

Q ss_pred             CccccceeeeEEEecCceEEE--EEEeeecCccccc------ccccc-----------------c---cce---------
Q psy2518          20 GQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAA------HSWKM-----------------K---VSI---------   62 (208)
Q Consensus        20 g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~------~~~t~-----------------~---~~~---------   62 (208)
                      |........+|+++|..++||  +++++.+..|.+.      ..|+.                 |   .++         
T Consensus        19 ~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~   98 (299)
T 2aka_B           19 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEA   98 (299)
T ss_dssp             CCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHH
T ss_pred             CCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHH
Confidence            444556788999999999999  4677777777422      12320                 0   000         


Q ss_pred             --------------eeEEEEEC-CeEEEEEEEeCCChh-------------hhcchhHhhhcCCcEEE-EEEeCCChhhH
Q psy2518          63 --------------KRTIKECE-GEEVRLMLWDTAGQE-------------EFDAITKAYYRGAQACV-ITFSTIDRDSF  113 (208)
Q Consensus        63 --------------~~~~~~~~-~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~d~ii-~v~d~~~~~s~  113 (208)
                                    ....+.+. .....+.+|||||..             .+..+...+++.++.++ +|+|.++..+.
T Consensus        99 ~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~  178 (299)
T 2aka_B           99 ETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLAN  178 (299)
T ss_dssp             HHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGG
T ss_pred             HHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhh
Confidence                          00011111 112579999999953             45567778888888776 79999876554


Q ss_pred             HHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         114 EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA--LGC-RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       114 ~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~~~-~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      .....|+..+..  .+.|+++|+||+|+.+.+....+..+.....  .+. +++++||++|.|++++|+.+.+.
T Consensus       179 ~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          179 SDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             CHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             hHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            443345544432  2689999999999966444333332211011  132 67899999999999999998874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.61  E-value=7.5e-16  Score=116.58  Aligned_cols=155  Identities=14%  Similarity=0.080  Sum_probs=98.6

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh----------hhcchh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE----------EFDAIT   91 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~   91 (208)
                      .....+++++|.+|+||  +++++.+..|...+.|+.|.......+.+++   .+.+|||+|..          .+....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            45567999999999999  4566666666666778888666555555554   47899999973          233333


Q ss_pred             Hhhh---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHHHHHHHHHhC--Ce
Q psy2518          92 KAYY---RGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEEADLLSRALG--CR  162 (208)
Q Consensus        92 ~~~~---~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~~~~~~~~~~--~~  162 (208)
                      ..++   ..++++++++|++++.++..  +..|+..     ...|+++++||+|+...  ++...+.+..++...+  +.
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            3444   57899999999998766542  3334321     26899999999997542  1112234555555554  47


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         163 LMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       163 ~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ++++||+++.|++++++.+.+.+.
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHh
Confidence            899999999999999999877653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.61  E-value=2.5e-17  Score=132.02  Aligned_cols=160  Identities=14%  Similarity=0.110  Sum_probs=83.9

Q ss_pred             ceeeeEEEecCceEEE-E-EEeeecC-cccccc--------ccccccceeeEEEEECCeEEEEEEEeCCCh-------hh
Q psy2518          25 DAITKAYYRGAQACVI-T-FSTIDRD-SFEAAH--------SWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-------EE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk-~-~~~~~~~-~f~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-------~~   86 (208)
                      .-.++|+++|++|+|| + ++++... .+...+        .+|++.+.....+..++....+.+|||+|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            3468999999999999 3 3442332 444332        234433333333444566788999999998       55


Q ss_pred             hcchhH-------hhhcC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518          87 FDAITK-------AYYRG-------------AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSV  146 (208)
Q Consensus        87 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~  146 (208)
                      +..+..       .+++.             +++++++.+.+. .+++.+..  ..+.+.....|+++|+||+|+...++
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            555554       44433             233444444332 23444321  22333334679999999999965433


Q ss_pred             C--CHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         147 V--APEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       147 v--~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      +  ..+++.++++.++++++++||++| |++++|..+.+.+...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~  215 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS  215 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence            2  346778889999999999999999 9999999999888643

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.60  E-value=6.3e-18  Score=143.40  Aligned_cols=150  Identities=17%  Similarity=0.218  Sum_probs=103.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +..+|+++|..++||  ++.++....+...+.+++..+.....+..++.  .+.||||||++.|..++...++.+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            457899999999999  34555555555554444443443333444443  58999999999999998889999999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC--CCCCHHH--HHHHHHHhC--CeEEEEecCCCCCH
Q psy2518         104 TFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ--SVVAPEE--ADLLSRALG--CRLMRTSVKEDINV  174 (208)
Q Consensus       104 v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~--~~v~~~~--~~~~~~~~~--~~~~e~Sa~~~~~i  174 (208)
                      |+|.++   +++.+.+    .....  .+.|+++++||+|+.+.  ..+..+.  ...++..++  ++++++||++|.|+
T Consensus        81 VVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI  154 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI  154 (501)
T ss_dssp             EEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred             EeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence            999988   4444433    22221  26899999999999542  1111110  001122233  68999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         175 NSIFRYLTT  183 (208)
Q Consensus       175 ~~~f~~i~~  183 (208)
                      +++|+.+..
T Consensus       155 ~eLle~I~~  163 (501)
T 1zo1_I          155 DELLDAILL  163 (501)
T ss_dssp             TTHHHHTTT
T ss_pred             chhhhhhhh
Confidence            999998764

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.60  E-value=6.8e-17  Score=136.78  Aligned_cols=151  Identities=18%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeec--Ccccc-------------------------------ccccccccceeeEEEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDR--DSFEA-------------------------------AHSWKMKVSIKRTIKEC   69 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~-------------------------------~~~~t~~~~~~~~~~~~   69 (208)
                      ...++|+++|..++||  ++.+++.  +.+.+                               ....|++..  ...+..
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~--~~~~~~  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVG--RAYFET  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC------------------------------CCEEEC
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEee--eEEEec
Confidence            4578999999999999  3344332  22211                               122344332  233444


Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhc-CCCC-EEEEEeCCCCCCC
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR---DSFEAAHSWKMKVENEC-GEIP-TVLVQNKIDLLDQ  144 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p-iivvgnK~Dl~~~  144 (208)
                      ++  ..+.||||||++.|.......++.+|++|+|+|.++.   .+|+...+|...+.... .+.| +++++||+|+...
T Consensus       119 ~~--~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~  196 (467)
T 1r5b_A          119 EH--RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSV  196 (467)
T ss_dssp             SS--EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTC
T ss_pred             CC--eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCc
Confidence            43  5689999999999998888889999999999999986   34443323333222211 2566 9999999998531


Q ss_pred             C------CCCHHHHHHHHHHh-C------CeEEEEecCCCCCHHHHHH
Q psy2518         145 S------VVAPEEADLLSRAL-G------CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       145 ~------~v~~~~~~~~~~~~-~------~~~~e~Sa~~~~~i~~~f~  179 (208)
                      .      ....++...+++.. +      ++++++||++|.|+.++|+
T Consensus       197 ~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          197 QWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence            1      11123455666665 3      5699999999999998763

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.60  E-value=5.2e-15  Score=118.60  Aligned_cols=130  Identities=15%  Similarity=0.071  Sum_probs=93.9

Q ss_pred             ecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHH
Q psy2518          46 DRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVE  124 (208)
Q Consensus        46 ~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~  124 (208)
                      ..+.|...+.|++| |........++..+..     ..++++..+.+.+++++|++++|||++++. +++.+..|+..+.
T Consensus        34 ~~~~~~~~~~~~vG-D~V~~~~~~~~~g~I~-----~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~  107 (302)
T 2yv5_A           34 PRGKVLKKTKIYAG-DYVWGEVVDPNTFAIE-----EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYE  107 (302)
T ss_dssp             ECSSSTTSSCCCBT-CEEEEEEEETTEEEEE-----EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHH
T ss_pred             EcCCcccCCCCcCc-eEEEEEEccCCeEEEE-----eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHH
Confidence            35666554447777 3322222222222111     236788888889999999999999999986 8998999998766


Q ss_pred             hhcCCCCEEEEEeCCCCCCCCCCC-HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         125 NECGEIPTVLVQNKIDLLDQSVVA-PEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       125 ~~~~~~piivvgnK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      .  .+.|+++|+||+|+.+++.+. .++..++++..+++++++||++|.|++++|..+..
T Consensus       108 ~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          108 Y--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             H--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             h--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence            5  378999999999996533222 34555666777899999999999999999987643

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.60  E-value=1.5e-15  Score=133.62  Aligned_cols=129  Identities=12%  Similarity=0.025  Sum_probs=86.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc-------------ccccc---ccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE-------------AAHSW---KMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~-------------~~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      .....++.++|.+++||  ++.++......             ..+.+   ..++.+......+....+.++||||+|++
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            45678999999999999  23443322111             01111   12334444555555456789999999999


Q ss_pred             hhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q psy2518          86 EFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA  158 (208)
Q Consensus        86 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~  158 (208)
                      .|......+++.+|++++|+|.++....... .|+..+...  +.|+++++||+|+.   ....+..++++..
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~~---~~~~~~~~~l~~~  152 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDKG---GDYYALLEDLRST  152 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGGC---CCHHHHHHHHHHH
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCchh---hhHHHHHHHHHHH
Confidence            9998889999999999999999876554433 444444432  68999999999985   2334444444443

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.57  E-value=2.5e-16  Score=137.08  Aligned_cols=152  Identities=14%  Similarity=0.043  Sum_probs=96.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-------------------------------cccccccccceeeEEEEECC
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-------------------------------AAHSWKMKVSIKRTIKECEG   71 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-------------------------------~~~~~t~~~~~~~~~~~~~~   71 (208)
                      ...+||+++|..++||  ++.+++.....                               .+..+.+.++.....+  +.
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence            4578999999999999  34555433111                               1111222223333333  33


Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hHHHHHHHHHH--HHhhcCCCCEEEEEeCCCCCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SFEAAHSWKMK--VENECGEIPTVLVQNKIDLLDQSV  146 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~piivvgnK~Dl~~~~~  146 (208)
                      ....+.||||||+++|......+++.+|++|+|+|+++..   +|.....+...  +....+..|+++|+||+|+.+.+.
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            4467899999999999988888999999999999999742   11111111111  112222345999999999865322


Q ss_pred             CC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy2518         147 VA----PEEADLLSRALG-----CRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       147 v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f  178 (208)
                      ..    .++...+....+     ++++++||++|.|+.++.
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            22    223333444444     589999999999998773

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.56  E-value=1.4e-15  Score=138.41  Aligned_cols=158  Identities=11%  Similarity=0.093  Sum_probs=103.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC-------cccc-------ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD-------SFEA-------AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~-------~f~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~   88 (208)
                      ...++|+++|..++||  ++.++...       .|..       ....+.|+.+....+.++.....+.||||||++.|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            4579999999999999  33444332       1110       112334443333444555556779999999999998


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCC---CCHHHHHHHHHHhC----
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSV---VAPEEADLLSRALG----  160 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~---v~~~~~~~~~~~~~----  160 (208)
                      ......++.+|++|+|+|.++....+ ..+|+..+...  +.| +++++||+|+.+...   ...++..++++..+    
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~  450 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD  450 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence            88888999999999999999864433 33444444332  577 789999999964211   11245566777665    


Q ss_pred             -CeEEEEecCCC--------CCHHHHHHHHHHHH
Q psy2518         161 -CRLMRTSVKED--------INVNSIFRYLTTKC  185 (208)
Q Consensus       161 -~~~~e~Sa~~~--------~~i~~~f~~i~~~~  185 (208)
                       ++++++||++|        .|+.++|+.+.+.+
T Consensus       451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence             58999999999        45777877776644

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.55  E-value=1.5e-15  Score=128.18  Aligned_cols=148  Identities=10%  Similarity=0.058  Sum_probs=97.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecC--cccc-------------------------------ccccccccceeeEEEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRD--SFEA-------------------------------AHSWKMKVSIKRTIKEC   69 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~--~f~~-------------------------------~~~~t~~~~~~~~~~~~   69 (208)
                      ...++|+++|..++||  ++.+++.+  .+.+                               +...|+  +....  .+
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi--~~~~~--~~   80 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITI--DIALW--KF   80 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCC--SCSCE--EE
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEE--EEEEE--EE
Confidence            4578999999999999  34555432  2211                               011233  22223  33


Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SFE---AAHSWKMKVENECGEIP-TVLVQNKIDLL  142 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-iivvgnK~Dl~  142 (208)
                      +.....+.||||||++.|......+++.+|++++|+|.++..   +|+   ....++.....  ...| +++++||+|+.
T Consensus        81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred             ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccc
Confidence            444567999999999999988888999999999999999763   332   22222222222  1455 89999999996


Q ss_pred             CCCC----CCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy2518         143 DQSV----VAPEEADLLSRALG-----CRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       143 ~~~~----v~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f  178 (208)
                      +...    ...++...+++.++     ++++++||++|.|+.++.
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            3111    12234555666665     589999999999997653

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=1.2e-15  Score=126.97  Aligned_cols=158  Identities=8%  Similarity=0.072  Sum_probs=82.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccc-cc-------cccccccceeeEEEEECCeEEEEEEEeCCChhhhc------
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFE-AA-------HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD------   88 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------   88 (208)
                      .-.++|+++|++|+||  +++++.+..+. ..       ..+|++.+.....+..++....+.+|||+|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            3457889999999999  34555554442 11       12344333333333334555689999999976531      


Q ss_pred             -c------------------hhHhhhcCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518          89 -A------------------ITKAYYRGAQACVITFSTIDR-DSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLDQSVV  147 (208)
Q Consensus        89 -~------------------~~~~~~~~~d~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~~~~v  147 (208)
                       .                  +.+.++.++++.+++|..+.. .+++... .|+..+..   ..|+|+|+||+|+...+.+
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~---~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT---TSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc---cCcEEEEEEcccCccHHHH
Confidence             1                  112345566665666665543 3555553 57666643   6899999999998655544


Q ss_pred             CH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         148 AP--EEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       148 ~~--~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ..  +.+.+.+..++++++++||+++.++.++|..+...+
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence            44  667778888899999999999999999888877654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.49  E-value=6.1e-17  Score=124.10  Aligned_cols=153  Identities=12%  Similarity=0.148  Sum_probs=96.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCcccccccccccccee------------eEEEEEC-CeEEEEEEEeCCChhhhcc
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIK------------RTIKECE-GEEVRLMLWDTAGQEEFDA   89 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~------------~~~~~~~-~~~~~l~i~Dt~g~~~~~~   89 (208)
                      ...+||+++|..|+||  ++.++....|...+.++++.++.            .+.+.++ +..+.+..||+  ++.+..
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~  113 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLV--GHALED  113 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHH--HHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHH--HHHHHH
Confidence            3578999999999999  45677777777667788877765            3455554 44444555665  444443


Q ss_pred             hh----Hhhhc--------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          90 IT----KAYYR--------------GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        90 ~~----~~~~~--------------~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      +.    ..++.              ..+..+.+.|.........  .. ...  .  ..|.++|+||+|+.+.+.+..++
T Consensus       114 l~~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~--~--~~~~iiv~NK~Dl~~~~~~~~~~  186 (226)
T 2hf9_A          114 LNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIE--KH-PGI--M--KTADLIVINKIDLADAVGADIKK  186 (226)
T ss_dssp             SCGGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH--H--TTCSEEEEECGGGHHHHTCCHHH
T ss_pred             HhcCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHh--hh-hhH--h--hcCCEEEEeccccCchhHHHHHH
Confidence            32    11111              1223344455321111000  00 001  0  36779999999996544466777


Q ss_pred             HHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         152 ADLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       152 ~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +.++++..  +++++++||++|.|++++|+.+.+.+.
T Consensus       187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            77777765  569999999999999999999988764

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.49  E-value=5.4e-14  Score=110.39  Aligned_cols=121  Identities=10%  Similarity=0.016  Sum_probs=83.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcc--ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc-----
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSF--EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR-----   96 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~-----   96 (208)
                      ..++|+++|.+++||  +++++.+..+  ...+.++. .+.....+..++.  .+.+|||||++.+......+++     
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEG-LRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-C-CCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcc-eeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHH
Confidence            579999999999999  4566666664  22333322 2334444455554  6899999999877665555443     


Q ss_pred             ----CCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHH
Q psy2518          97 ----GAQACVITFSTIDRDSFEAA-HSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPE  150 (208)
Q Consensus        97 ----~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~  150 (208)
                          .+|++++|++++... +... ..|+..+....+   ..|+++|+||+|+...+....+
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e  172 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE  172 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence                889999999998754 4333 467777776554   2499999999999654444443

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.48  E-value=4.1e-14  Score=124.85  Aligned_cols=113  Identities=13%  Similarity=0.170  Sum_probs=78.9

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecC--cc------cc------------ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRD--SF------EA------------AHSWKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~--~f------~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      ....++|.++|..++||  ++.++...  .+      .+            .+.+|++..  ...+.+.  .+.+++|||
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~~--~~~i~liDT   84 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFWK--DHRINIIDT   84 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEET--TEEEEEECC
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEEC--CeEEEEEEC
Confidence            46789999999999999  33444321  11      00            233444322  2223333  467999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      +|+..|......+++.+|++++|+|.++..+++....|.... +.  +.|+++++||+|+..
T Consensus        85 PG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~-~~--~~p~ivviNKiD~~~  143 (691)
T 1dar_A           85 PGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAE-KY--KVPRIAFANKMDKTG  143 (691)
T ss_dssp             CSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHH-HT--TCCEEEEEECTTSTT
T ss_pred             cCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHH-Hc--CCCEEEEEECCCccc
Confidence            999999988999999999999999999988888776665432 22  789999999999854

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.47  E-value=1e-13  Score=115.34  Aligned_cols=156  Identities=15%  Similarity=0.123  Sum_probs=104.2

Q ss_pred             eeEEEecCceEEE-EE-EeeecCcc-ccccc-cccccceeeEEEEECCeEEEEEEEeCCChhh----hcchhHhh---hc
Q psy2518          28 TKAYYRGAQACVI-TF-STIDRDSF-EAAHS-WKMKVSIKRTIKECEGEEVRLMLWDTAGQEE----FDAITKAY---YR   96 (208)
Q Consensus        28 ~ki~~vG~s~~gk-~~-~~~~~~~f-~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~----~~~~~~~~---~~   96 (208)
                      -.+.++|.+++|| ++ +++..... ...+. .|+  ......+.+++ ...+.+||++|...    +..+...+   ..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl--~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e  234 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTL--SPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA  234 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSS--CCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCccccee--cceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence            4578999999999 33 33333321 11121 111  11122334443 24578999999732    22233333   45


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDIN  173 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~  173 (208)
                      .++.++.++|++ ..++..+..|..++.....   ..|.++++||+|+...  ...++..+.+...++.++++||+++.|
T Consensus       235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~g  311 (416)
T 1udx_A          235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAG  311 (416)
T ss_dssp             SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTT
T ss_pred             HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccC
Confidence            799999999998 6678888888877776543   6899999999998543  222334444555678999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2518         174 VNSIFRYLTTKCLSEL  189 (208)
Q Consensus       174 i~~~f~~i~~~~~~~~  189 (208)
                      ++++++.+.+.+....
T Consensus       312 i~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          312 LPALKEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999886543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.46  E-value=6.5e-14  Score=120.01  Aligned_cols=117  Identities=12%  Similarity=0.065  Sum_probs=75.2

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecC--cc----------------cc--ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRD--SF----------------EA--AHSWKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~--~f----------------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      ....++|+++|..++||  ++.++...  .+                .+  ...++.|+.+......++...+.++||||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            35689999999999999  23433321  11                00  01123333333334444444577999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      ||++.|......+++.+|++++|+|.++...... ..++..+..  .+.|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCcc
Confidence            9999998888889999999999999998644322 222222222  1789999999999854

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.46  E-value=7.1e-16  Score=133.84  Aligned_cols=144  Identities=17%  Similarity=0.142  Sum_probs=74.3

Q ss_pred             cceeeeEEEecCceEEE--EEEeee-------------------------------cCccccccccccccceeeEEEEEC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTID-------------------------------RDSFEAAHSWKMKVSIKRTIKECE   70 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~-------------------------------~~~f~~~~~~t~~~~~~~~~~~~~   70 (208)
                      -...++|+++|..++||  ++.+++                               .+.+.++..+.+.++.....+.. 
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-  252 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-  252 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-
Confidence            45678999999999999  334332                               12223333444444444444443 


Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCC-EEEEEeCC
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDR----------DSFEAAHSWKMKVENECGEIP-TVLVQNKI  139 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~p-iivvgnK~  139 (208)
                       ....+.||||||++.|.......++.+|++|+|+|.++.          ++.+.+    ..+. .. ..| +|+|+||+
T Consensus       253 -~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~-~l-gip~iIvviNKi  325 (592)
T 3mca_A          253 -DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLR-AL-GISEIVVSVNKL  325 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHH-HS-SCCCEEEEEECG
T ss_pred             -CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHH-Hc-CCCeEEEEEecc
Confidence             346789999999999998888889999999999999863          222222    1121 22 454 99999999


Q ss_pred             CCCCCCCC----CHHHHHHHH-HHhCC-----eEEEEecCCCCCHH
Q psy2518         140 DLLDQSVV----APEEADLLS-RALGC-----RLMRTSVKEDINVN  175 (208)
Q Consensus       140 Dl~~~~~v----~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~i~  175 (208)
                      |+.+....    ..++...+. +..++     +++++||++|.|+.
T Consensus       326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            98542111    112233333 33454     69999999999998

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.46  E-value=2.9e-15  Score=122.83  Aligned_cols=107  Identities=19%  Similarity=0.174  Sum_probs=78.5

Q ss_pred             EEEEEEeCCChhhh-------------cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCC
Q psy2518          74 VRLMLWDTAGQEEF-------------DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKI  139 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~  139 (208)
                      ..+.+|||||..++             ..+...+++.+|++++|+|..+.+...  ..|+..+....+ ..|+++|+||+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence            35899999998765             556778899999999999876544332  234444444433 67999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         140 DLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |+.++.....+....++..++.+|+++|++++.++++.+....
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~  256 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA  256 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence            9976666665555555555678999999999998887766543

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.45  E-value=4.8e-13  Score=118.29  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             cceeeeEEEecCceEEE--EEEeeec--Ccccc------------------ccccccccceeeEEEEE-----CCeEEEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDR--DSFEA------------------AHSWKMKVSIKRTIKEC-----EGEEVRL   76 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~------------------~~~~t~~~~~~~~~~~~-----~~~~~~l   76 (208)
                      ..+.++|+++|..++||  ++.++..  +.+..                  +...|+....  ..+.+     ++..+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~--~~~~~~~~~~~~~~~~i   84 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA--TTAFWSGMAKQYEPHRI   84 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece--EEEEECCccccCCceeE
Confidence            45689999999999999  2333321  11111                  1222332221  22332     2345889


Q ss_pred             EEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          77 MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        77 ~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      +||||||+..|......+++.+|++|+|+|.++..+.+....|.. ...  .+.|+++++||+|+..
T Consensus        85 ~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           85 NIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence            999999999998889999999999999999998877665555533 222  2689999999999853

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.44  E-value=5.4e-14  Score=124.18  Aligned_cols=112  Identities=13%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             EEEEEeCCChhhh---cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHH-
Q psy2518          75 RLMLWDTAGQEEF---DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPE-  150 (208)
Q Consensus        75 ~l~i~Dt~g~~~~---~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~-  150 (208)
                      .+.||||||....   ......+++.+|++++|+|.+++.+......|...+...  ..|+++|+||+|+.....++.+ 
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~--~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGR--GLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTS--CCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhh--CCCEEEEEECcccccccccChhh
Confidence            5899999997653   345567889999999999999988887776665444322  5789999999998654322221 


Q ss_pred             --H-------HHH-----HHHHh--------CCeEEEEecC--------------CCCCHHHHHHHHHHHHHHH
Q psy2518         151 --E-------ADL-----LSRAL--------GCRLMRTSVK--------------EDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       151 --~-------~~~-----~~~~~--------~~~~~e~Sa~--------------~~~~i~~~f~~i~~~~~~~  188 (208)
                        +       ...     +....        +.++++|||+              ++.|+++++..+.+.+...
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~~  326 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTRE  326 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHHh
Confidence              1       111     11111        1368999999              9999999999998876543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.41  E-value=1e-13  Score=109.30  Aligned_cols=122  Identities=9%  Similarity=-0.010  Sum_probs=80.0

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhH-------hh--
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITK-------AY--   94 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~-------~~--   94 (208)
                      ..++|+++|.+|+||  +++++.+..+... .++.+.........++...+.+.+|||||.+.+.....       .+  
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            479999999999999  4566666665321 12222223333344444456799999999876643322       12  


Q ss_pred             hcCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcC-C--CCEEEEEeCCCCCCCCCCCH
Q psy2518          95 YRGAQACVITFSTIDRDSFEAA-HSWKMKVENECG-E--IPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~-~--~piivvgnK~Dl~~~~~v~~  149 (208)
                      .+.+|++++|+|++.. ++... ..|+..+.+..+ +  .|+++|+||+|+...+....
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~  174 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  174 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCH
Confidence            3479999999999763 34433 467777766544 2  69999999999965444333

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.36  E-value=2.7e-12  Score=113.31  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=79.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeec--Ccccc------------------ccccccccceeeEEEEECCeEEEEEEEeC
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDR--DSFEA------------------AHSWKMKVSIKRTIKECEGEEVRLMLWDT   81 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~--~~f~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt   81 (208)
                      .....+|+++|..++||  +++++..  +.+..                  ....|+.  .....+.++  .+.+++|||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~--~~~~~~~~~--~~~i~liDT   82 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITIT--SAATTAAWE--GHRVNIIDT   82 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------C--CSEEEEEET--TEEEEEECC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEe--eeeEEEEEC--CeeEEEEEC
Confidence            35689999999999999  3444442  22210                  1122332  122333344  367999999


Q ss_pred             CChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          82 AGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        82 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      +|+..|......+++.+|++++|+|.++..+++....|.. +.+.  +.|+++|+||+|+..
T Consensus        83 PG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           83 PGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTSTT
T ss_pred             cCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCccc
Confidence            9999998888999999999999999999888877666643 3332  689999999999854

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.35  E-value=5.2e-14  Score=115.11  Aligned_cols=163  Identities=15%  Similarity=0.084  Sum_probs=95.7

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCcccccc------cccc--------------------------------
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAH------SWKM--------------------------------   58 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~------~~t~--------------------------------   58 (208)
                      .|........+|+++|..++||  +++++.+..|.+..      .|+.                                
T Consensus        23 ~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~  102 (353)
T 2x2e_A           23 IGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIE  102 (353)
T ss_dssp             TTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHH
T ss_pred             cCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHH
Confidence            4555556778999999999999  46777777774221      1220                                


Q ss_pred             -----------ccceeeEEEEEC-CeEEEEEEEeCCChh-------------hhcchhHhhhcCCcEEEE-EEeCCChhh
Q psy2518          59 -----------KVSIKRTIKECE-GEEVRLMLWDTAGQE-------------EFDAITKAYYRGAQACVI-TFSTIDRDS  112 (208)
Q Consensus        59 -----------~~~~~~~~~~~~-~~~~~l~i~Dt~g~~-------------~~~~~~~~~~~~~d~ii~-v~d~~~~~s  112 (208)
                                 |+......+.+. .....+.||||||..             .+..+...|++.++.+++ |.|.+....
T Consensus       103 ~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~  182 (353)
T 2x2e_A          103 AETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLA  182 (353)
T ss_dssp             HHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGG
T ss_pred             HHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccc
Confidence                       000011111121 113569999999952             455667778877665555 455543222


Q ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH--HHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy2518         113 FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL--LSRALGC-RLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~--~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      -.....++..+..  ...|+++|+||+|+.++.....+..+.  +....++ +++++||+++.|++++|+.+.+
T Consensus       183 ~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          183 NSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             GCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             hhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            1122223333322  168999999999996543322222111  0011233 5688999999999999998876

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.34  E-value=1.7e-13  Score=104.40  Aligned_cols=103  Identities=14%  Similarity=0.159  Sum_probs=71.6

Q ss_pred             EEEEEEeCCChhhhcchhHhh-hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAY-YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA  152 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~-~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~  152 (208)
                      +.+.+|||+|+-.    .+.+ ...++.+++|+|.++....  ...+...   .  +.|+++|+||+|+.+.+....++.
T Consensus       109 ~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~---~--~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKHPEI---F--RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHCHHH---H--HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhhhhh---h--hcCCEEEEecccCCcchhhHHHHH
Confidence            5678999999511    1111 1367899999998875431  1111111   1  478999999999855334566677


Q ss_pred             HHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         153 DLLSRAL--GCRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       153 ~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      .+.++..  +.+++++||++|.|++++|+.+.+.+..
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            7666665  3689999999999999999999887654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.34  E-value=5.6e-13  Score=107.01  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=69.5

Q ss_pred             EEEEEEeCCChhh-------------hcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCC
Q psy2518          74 VRLMLWDTAGQEE-------------FDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKI  139 (208)
Q Consensus        74 ~~l~i~Dt~g~~~-------------~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~  139 (208)
                      ..+.+|||||...             +......+++.+|++++|+|.++.. .-.....+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4689999999643             4556777899999999999974432 11111122222222  268999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHhCCeEEEEecC---C---CCCHHHHHHHHHHHHHH
Q psy2518         140 DLLDQSVVAPEEADLLSRALGCRLMRTSVK---E---DINVNSIFRYLTTKCLS  187 (208)
Q Consensus       140 Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~---~---~~~i~~~f~~i~~~~~~  187 (208)
                      |+.+......+.........+..++++|+.   +   +.|+.++++.+.+.+..
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            996544322332221111122566666655   4   68899999887776643

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.28  E-value=2e-12  Score=116.32  Aligned_cols=126  Identities=16%  Similarity=0.200  Sum_probs=87.5

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecC------------cccc----c--cccccccceeeEEEE------------EC
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRD------------SFEA----A--HSWKMKVSIKRTIKE------------CE   70 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~------------~f~~----~--~~~t~~~~~~~~~~~------------~~   70 (208)
                      .....+||+++|..++||  ++.+++..            .+.+    +  ...|++.......+.            .+
T Consensus        15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~   94 (842)
T 1n0u_A           15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD   94 (842)
T ss_dssp             CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred             CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence            345688999999999999  23433332            2211    1  123444333333333            24


Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC-CCCCCH
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD-QSVVAP  149 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~-~~~v~~  149 (208)
                      +..+.++||||||+.+|...+..+++.+|++++|+|.++..+++....|.....   .+.|+++++||+|+.. +...+.
T Consensus        95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~~~e~~~~~  171 (842)
T 1n0u_A           95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRALLELQVSK  171 (842)
T ss_dssp             SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHHHHTSCCCH
T ss_pred             CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcchhhhccCH
Confidence            568899999999999999999999999999999999999988888766654432   2689999999999852 233444


Q ss_pred             HH
Q psy2518         150 EE  151 (208)
Q Consensus       150 ~~  151 (208)
                      ++
T Consensus       172 ~e  173 (842)
T 1n0u_A          172 ED  173 (842)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.27  E-value=8e-13  Score=109.54  Aligned_cols=83  Identities=17%  Similarity=0.057  Sum_probs=44.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCccc-ccc-----ccccccceeeEE---------------EEECC-eEEEEEEEeCCC
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFE-AAH-----SWKMKVSIKRTI---------------KECEG-EEVRLMLWDTAG   83 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~-~~~-----~~t~~~~~~~~~---------------~~~~~-~~~~l~i~Dt~g   83 (208)
                      +||.++|..++||  +++++...... ..+     .++.|..+....               ..+++ ..+.+++|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999  45666555422 122     223332111100               11233 257899999999


Q ss_pred             hhh----hcchhH---hhhcCCcEEEEEEeCCCh
Q psy2518          84 QEE----FDAITK---AYYRGAQACVITFSTIDR  110 (208)
Q Consensus        84 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~  110 (208)
                      ...    ...+..   .+++.+|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            854    233333   346899999999999875

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.26  E-value=6.8e-12  Score=94.13  Aligned_cols=103  Identities=3%  Similarity=-0.122  Sum_probs=68.0

Q ss_pred             CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHH---HHhh-c--CCCCEEEEEeCC-CCCCCCCCCHHHHH
Q psy2518          81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK---VENE-C--GEIPTVLVQNKI-DLLDQSVVAPEEAD  153 (208)
Q Consensus        81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~---~~~~-~--~~~piivvgnK~-Dl~~~~~v~~~~~~  153 (208)
                      .+||+.++++|+.||.++|++|+|+|.+|++-++ ...-+.+   +... .  .+.|++|++||. |+.  ...+..+..
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~  185 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLA  185 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHH
Confidence            3589999999999999999999999999986543 3222222   2222 1  368999999995 773  345555544


Q ss_pred             HHHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         154 LLSRA----LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       154 ~~~~~----~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +....    ..+.++.|||++|+|+.+.++++.+.+.
T Consensus       186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            33211    2346899999999999999999987653

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.18  E-value=3e-11  Score=98.61  Aligned_cols=141  Identities=12%  Similarity=0.067  Sum_probs=88.1

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccc-cccccceeeEEEEECCe---------------EEEEEEEeCCChhhhc
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHS-WKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEEFD   88 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~   88 (208)
                      ++|.++|..++||  +++++....+.. .++ +|++...  ..+.+++.               +..+++|||||+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~--g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNT--GVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCS--SEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceE--EEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            6899999999999  466666655432 222 2444332  23444442               2579999999987653


Q ss_pred             ----chhH---hhhcCCcEEEEEEeCCCh----------hhHHHHHHHHHHH----------------------------
Q psy2518          89 ----AITK---AYYRGAQACVITFSTIDR----------DSFEAAHSWKMKV----------------------------  123 (208)
Q Consensus        89 ----~~~~---~~~~~~d~ii~v~d~~~~----------~s~~~~~~~~~~~----------------------------  123 (208)
                          .+..   .+++.+|++++|+|+++.          +.++++..|..++                            
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~  160 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF  160 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH
Confidence                2332   357899999999999862          2333322211111                            


Q ss_pred             ------------H-------------------hhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC
Q psy2518         124 ------------E-------------------NECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE  170 (208)
Q Consensus       124 ------------~-------------------~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~  170 (208)
                                  .                   ....  ..|+++++||.|..-......+...+++...+.+++.+||+.
T Consensus       161 ~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          161 ELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                        0                   0001  489999999999642222335667778888899999999874

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.17  E-value=1.1e-10  Score=95.94  Aligned_cols=96  Identities=18%  Similarity=0.244  Sum_probs=76.3

Q ss_pred             ChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----HHH
Q psy2518          83 GQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----SRA  158 (208)
Q Consensus        83 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~~~  158 (208)
                      ..+.|.++.+.+++.++++++|+|++++.     ..|...+.+...+.|+++|+||+|+.+. ....+...++    ++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~  128 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQ  128 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHH
Confidence            56889999999999999999999999863     4566667666668999999999999653 3444444444    566


Q ss_pred             hCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         159 LGC---RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       159 ~~~---~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      .|+   +++++||++|.|++++++.+.+.
T Consensus       129 ~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          129 LGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             TTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             cCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            677   79999999999999999988653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.14  E-value=1e-10  Score=91.87  Aligned_cols=103  Identities=3%  Similarity=-0.130  Sum_probs=72.6

Q ss_pred             CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHH---HHH-hh--cCCCCEEEEEeC-CCCCCCCCCCHHHHH
Q psy2518          81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM---KVE-NE--CGEIPTVLVQNK-IDLLDQSVVAPEEAD  153 (208)
Q Consensus        81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~---~~~-~~--~~~~piivvgnK-~Dl~~~~~v~~~~~~  153 (208)
                      .+||+..+.+|+.||.++|++|+|+|.+|++.++ ...-+.   .+. ..  ..+.|++|++|| .|+..  .++..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4789999999999999999999999999987543 222111   222 21  137999999996 58743  45555444


Q ss_pred             HHHHH----hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         154 LLSRA----LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       154 ~~~~~----~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      +....    ..+.++.|||++|+|+.+.++++.+.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            32211    2346899999999999999999998763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.08  E-value=8.1e-12  Score=102.17  Aligned_cols=104  Identities=17%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA  152 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~  152 (208)
                      .+.+.||||+|...   .....+..+|++++|+|.+..+.+..+..+   +    .+.|.++|.||+|+...... ....
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~----~~~p~ivVlNK~Dl~~~~~~-~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V----LELADIVVVNKADGEHHKEA-RLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S----GGGCSEEEEECCCGGGHHHH-HHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H----hhcCCEEEEECCCCcChhHH-HHHH
Confidence            35689999999422   233445899999999998876554333211   1    14689999999998532111 1111


Q ss_pred             HHHHHH---h-------CCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         153 DLLSRA---L-------GCRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       153 ~~~~~~---~-------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      .++...   .       +.+++++||++|.|++++++.+.+.+..
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            222222   1       4689999999999999999999887754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.05  E-value=1.3e-10  Score=95.14  Aligned_cols=53  Identities=13%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             CCCEEEEEeCCCCC--CC-CCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         129 EIPTVLVQNKIDLL--DQ-SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       129 ~~piivvgnK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ..|+++++||.|..  +. +....+...++++..+.+++++||+...++.+++..-
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~  256 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEE  256 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHH
Confidence            37999999999842  21 1234567778888889999999999987777766553

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.02  E-value=5.5e-10  Score=91.74  Aligned_cols=98  Identities=17%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             CCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH----H
Q psy2518          81 TAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL----S  156 (208)
Q Consensus        81 t~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~----~  156 (208)
                      ...++.|.+..+.++..++++++|+|++++.+     .|...+.+...+.|+++|+||+|+... ....+...++    +
T Consensus        55 ~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           55 PLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPR-SVKYPKLLRWMRRMA  128 (369)
T ss_dssp             ----CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHH
Confidence            34588999999999999999999999999774     355555555567899999999999653 3344444444    4


Q ss_pred             HHhCC---eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         157 RALGC---RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       157 ~~~~~---~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      +..|+   .++.+||++|.|++++++.+.+.
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~  159 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRY  159 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence            55676   68999999999999999988654

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.98  E-value=1e-10  Score=100.79  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=78.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc---cccccccccceeeEEEEEC-------------------------C--
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE---AAHSWKMKVSIKRTIKECE-------------------------G--   71 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~---~~~~~t~~~~~~~~~~~~~-------------------------~--   71 (208)
                      .....+|+++|..++||  +++++++..+.   ....|+..  .. ..+..+                         +  
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~-~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~  138 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CF-VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT  138 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SE-EEEECCSSSEEECCC------------------C
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eE-EEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence            45678999999999999  46777777663   12222221  00 000000                         0  


Q ss_pred             ----eE---------EEEEEEeCCChhh-----------hcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q psy2518          72 ----EE---------VRLMLWDTAGQEE-----------FDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC  127 (208)
Q Consensus        72 ----~~---------~~l~i~Dt~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~  127 (208)
                          -.         ..+.+|||+|...           |......+++.+|++++|+|.++.........|+..+.+. 
T Consensus       139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-  217 (550)
T 2qpt_A          139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-  217 (550)
T ss_dssp             CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC-
T ss_pred             ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc-
Confidence                00         2589999999864           4566677889999999999998865555666677666543 


Q ss_pred             CCCCEEEEEeCCCCCC
Q psy2518         128 GEIPTVLVQNKIDLLD  143 (208)
Q Consensus       128 ~~~piivvgnK~Dl~~  143 (208)
                       ..|+++|+||+|+..
T Consensus       218 -~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 -EDKIRVVLNKADMVE  232 (550)
T ss_dssp             -GGGEEEEEECGGGSC
T ss_pred             -CCCEEEEEECCCccC
Confidence             578999999999854

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.95  E-value=2.4e-09  Score=83.40  Aligned_cols=109  Identities=16%  Similarity=0.060  Sum_probs=68.1

Q ss_pred             EEEEEEeCCChhhhcchhH------hhhcCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITK------AYYRGAQACVITFSTIDRDS---FEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ  144 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~------~~~~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~  144 (208)
                      +.+.||||+|+..+.....      ..+.. ++++++.|.....+   +.....+..... ...+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence            5789999999876543322      24456 88888888754333   222211111111 1126899999999998543


Q ss_pred             CCCCHHHHHHH----------------------------HHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         145 SVVAPEEADLL----------------------------SRALG--CRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       145 ~~v~~~~~~~~----------------------------~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ..+  ++..++                            +..++  .+++++||+++.|++++++.+.+.+.
T Consensus       187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            211  111111                            23333  48999999999999999999887764

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.84  E-value=2.2e-08  Score=86.20  Aligned_cols=115  Identities=12%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             ccceeeeEEEecCceEEEE-E-Eeee--c--------------------CccccccccccccceeeEEEEECCeEEEEEE
Q psy2518          23 EFDAITKAYYRGAQACVIT-F-STID--R--------------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLML   78 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk~-~-~~~~--~--------------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i   78 (208)
                      +-.+..+|.++|-...||+ + -+++  .                    +....+....+  .+....+.+..+.++++|
T Consensus        27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGI--TI~s~~~~~~~~~~~iNl  104 (548)
T 3vqt_A           27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGI--SVTTSVMQFPYRDRVVNL  104 (548)
T ss_dssp             HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC----------------------CTTTEEEEEETTEEEEE
T ss_pred             cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCC--cEeeceEEEEECCEEEEE
Confidence            3457889999999999992 1 1111  1                    11111222222  223333334334467999


Q ss_pred             EeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          79 WDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        79 ~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      .||||+..|.......++-+|++++|+|....-.-+...-|......   +.|.+++.||.|..
T Consensus       105 IDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          105 LDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDRE  165 (548)
T ss_dssp             ECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSC
T ss_pred             EeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccch
Confidence            99999999999999999999999999999987666665666443333   79999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.75  E-value=2.4e-09  Score=94.79  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=68.5

Q ss_pred             EEEEEeCCChhh-------------hcchhHhhh-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          75 RLMLWDTAGQEE-------------FDAITKAYY-RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        75 ~l~i~Dt~g~~~-------------~~~~~~~~~-~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.++||||...             ...+...++ ..+|++++|.|.++...-.....++..+...  ..|+++|.||+|
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiD  228 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD  228 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcc
Confidence            478999999432             233444455 5889999999998754332222233333322  689999999999


Q ss_pred             CCCCCCCCHHHHHHHHHH----hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy2518         141 LLDQSVVAPEEADLLSRA----LGC-RLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       141 l~~~~~v~~~~~~~~~~~----~~~-~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      +.++.........  .+.    .+. +++.+||++|.|++++++.+.+.
T Consensus       229 lv~~~~~~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          229 LMDEGTDARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             SSCTTCCSHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             cCCcchhhHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            8654433322111  111    132 56789999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=4.1e-08  Score=77.63  Aligned_cols=98  Identities=11%  Similarity=-0.013  Sum_probs=69.5

Q ss_pred             EEeCCChh-hhcchhHhhhcCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH
Q psy2518          78 LWDTAGQE-EFDAITKAYYRGAQACVITFSTIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL  154 (208)
Q Consensus        78 i~Dt~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~  154 (208)
                      |-..||+. .........++.+|+++.|+|+.++.+..  .+.+|+       .+.|.++|.||+||.+     .+..+.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~-----~~~~~~   70 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKAD-----AAVTQQ   70 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSC-----HHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCC-----HHHHHH
Confidence            44567764 44555667889999999999999988764  344443       4789999999999954     233333


Q ss_pred             H---HHHhCCeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         155 L---SRALGCRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       155 ~---~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                      +   .+..+++++.+||+++.|++++++.+.+.+..
T Consensus        71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~  106 (282)
T 1puj_A           71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE  106 (282)
T ss_dssp             HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence            3   33457899999999999999999988776653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.58  E-value=9.4e-08  Score=77.57  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=64.1

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH--HH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP--EE  151 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~--~~  151 (208)
                      +.+.||||+|......   ...+.+|++++|+|.+..+.++.+..   ...    +.|.++|.||+|+........  ++
T Consensus       149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~  218 (341)
T 2p67_A          149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM----EVADLIVINKDDGDNHTNVAIARHM  218 (341)
T ss_dssp             CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH----HHCSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh----cccCEEEEECCCCCChHHHHHHHHH
Confidence            5689999999654332   24689999999999976544322111   111    357899999999854211110  01


Q ss_pred             HHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         152 ADLLSRAL-------GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       152 ~~~~~~~~-------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ........       ..+++++||++|.|++++++.+.+.+.
T Consensus       219 l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          219 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111121       347899999999999999999988764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.47  E-value=8e-08  Score=84.18  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=59.0

Q ss_pred             eeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          62 IKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        62 ~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      +....+.+..+.++++|.||||+..|.......++-+|++++|+|....-.-+...-|......   +.|.+++.||.|.
T Consensus        55 I~s~~~~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr  131 (638)
T 3j25_A           55 IQTGITSFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQ  131 (638)
T ss_dssp             SSCCCCCCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCS
T ss_pred             EEeeeEEEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccc
Confidence            3344444555557799999999999999899999999999999999876554444444433333   6899999999997


Q ss_pred             C
Q psy2518         142 L  142 (208)
Q Consensus       142 ~  142 (208)
                      .
T Consensus       132 ~  132 (638)
T 3j25_A          132 N  132 (638)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.45  E-value=1.1e-06  Score=71.44  Aligned_cols=102  Identities=12%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD  153 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~  153 (208)
                      +.+.++||+|...   ........+|++++|+|.+++...+.+..   .+    ...|.++|.||+|+.+.... .....
T Consensus       167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~-~~~~~  235 (349)
T 2www_A          167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPA-RRIQA  235 (349)
T ss_dssp             CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHH-HHHHH
T ss_pred             CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhH-HHHHH
Confidence            4578999999531   12345679999999999987643322211   11    14678999999998431100 01112


Q ss_pred             HHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         154 LLSRA----------LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       154 ~~~~~----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .+...          .+.+++.+||++|.|++++++.+.+.+.
T Consensus       236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            22211          1347899999999999999999987653

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.39  E-value=3.1e-06  Score=75.04  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      +.+.+++.||||+-.|.......++-+|++++|+|....-.-+...-|......   +.|.+++.||.|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEcccccc
Confidence            468999999999999999899999999999999999887665555555444444   79999999999963

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.39  E-value=4.4e-08  Score=80.70  Aligned_cols=90  Identities=12%  Similarity=0.009  Sum_probs=48.9

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhh
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEE   86 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~   86 (208)
                      ....+++.++|..++||  +++++....+.....|+.+.+.....+.+++.               +..+++|||+|...
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            34568999999999999  45666665553333333333444445555442               33599999999876


Q ss_pred             hcc-------hhHhhhcCCcEEEEEEeCCChhhH
Q psy2518          87 FDA-------ITKAYYRGAQACVITFSTIDRDSF  113 (208)
Q Consensus        87 ~~~-------~~~~~~~~~d~ii~v~d~~~~~s~  113 (208)
                      +.+       ....+++.+|++++|+|+++.+++
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            543       345678999999999999865443

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.22  E-value=9e-06  Score=66.62  Aligned_cols=131  Identities=11%  Similarity=0.061  Sum_probs=80.6

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCCChhhh----cchhH---hhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DAITK---AYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~~~~---~~~   95 (208)
                      ....|.++|..++||  +|+.+....-. .+| |....+-....+.+++..  +++.||||....    ..+.+   ..+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~-pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i  147 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEY-EFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVA  147 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT-CSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCC-CCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHH
Confidence            356899999999999  45555443322 233 222234455566777755  789999996321    11222   346


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh---cCCCCEEEEEeCCCCCC--------CCCCCHHHHHHHHHHhCC
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENE---CGEIPTVLVQNKIDLLD--------QSVVAPEEADLLSRALGC  161 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~piivvgnK~Dl~~--------~~~v~~~~~~~~~~~~~~  161 (208)
                      +.||++++|.|.+++..-  ......++...   ....|.+++.||.|...        ......++...+...+.+
T Consensus       148 ~~ad~il~vvD~~~p~~~--~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          148 RTCNLLFIILDVNKPLHH--KQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             HHCSEEEEEEETTSHHHH--HHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             HhcCccccccccCccHHH--HHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            789999999999987432  22222233222   22678888999999632        134566777666666554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.11  E-value=1.8e-06  Score=67.48  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=60.0

Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHH--HHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEE
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEA--AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                      ......++.+|+++.|+|+.++.+..+  +. |+        +.|.++|.||+||.+...  .+...++.+..|+++ .+
T Consensus        13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~i   80 (262)
T 3cnl_A           13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-IT   80 (262)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EE
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EE
Confidence            345667899999999999999877643  22 22        689999999999954210  112233344557888 99


Q ss_pred             ecCCCCCHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTT  183 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~  183 (208)
                      ||+++.|++++++.+.+
T Consensus        81 Sa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           81 THKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             CCTTSCHHHHHHHHCCC
T ss_pred             ECCCCcCHHHHHHHHHH
Confidence            99999999999887644

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.08  E-value=9.1e-06  Score=65.75  Aligned_cols=103  Identities=16%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD  153 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~  153 (208)
                      +.+.++||+|....   .......+|.+++++|....+..+.+..+.   .    ..|.+++.||+|+...........+
T Consensus       148 ~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~~  217 (337)
T 2qm8_A          148 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAAS  217 (337)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHHH
Confidence            46899999996431   123457899999999987543322221111   1    2355667799997432211122223


Q ss_pred             HHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         154 LLSRAL----------GCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       154 ~~~~~~----------~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .+....          +.+++.+||+++.|++++++.+.+...
T Consensus       218 ~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          218 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            333221          347899999999999999999887653

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.05  E-value=1.5e-05  Score=65.76  Aligned_cols=85  Identities=15%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCcc-ccccccccccceeeEEEEECCe---------------EEEEEEEeCCChhh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSF-EAAHSWKMKVSIKRTIKECEGE---------------EVRLMLWDTAGQEE   86 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f-~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~   86 (208)
                      ....++.++|..|+||  +++.+.+..+ .....|+...+.....+.+.+.               ...+.+||++|...
T Consensus        18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            4467899999999999  4565555444 3323332223333445555542               13589999999643


Q ss_pred             -------hcchhHhhhcCCcEEEEEEeCCC
Q psy2518          87 -------FDAITKAYYRGAQACVITFSTID  109 (208)
Q Consensus        87 -------~~~~~~~~~~~~d~ii~v~d~~~  109 (208)
                             ........++.+|+++.|+|..+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   22234455789999999999864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.02  E-value=1.6e-06  Score=69.17  Aligned_cols=91  Identities=18%  Similarity=0.261  Sum_probs=61.1

Q ss_pred             cchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHHhCCeEE
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRALGCRLM  164 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~  164 (208)
                      ..+.+..++++|.+++|+|+.+|. +...+.+++......  ++|.++|.||+||.+....  ..+...+..+..|.+++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~--~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHC--CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            345556789999999999999765 444445555443322  6889999999999553110  01222233334588999


Q ss_pred             EEecCCCCCHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRY  180 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~  180 (208)
                      .+||+++.|+++++..
T Consensus       155 ~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          155 LTSSKDQDSLADIIPH  170 (307)
T ss_dssp             ECCHHHHTTCTTTGGG
T ss_pred             EEecCCCCCHHHHHhh
Confidence            9999999888776653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.84  E-value=0.00011  Score=59.71  Aligned_cols=84  Identities=20%  Similarity=0.243  Sum_probs=57.2

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHH---HHhCCeEEEEecCC
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLS---RALGCRLMRTSVKE  170 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~---~~~~~~~~e~Sa~~  170 (208)
                      ...++|.+++|.+.....+...+.+++......  +.|+++|.||+||.+...  .+..+.+.   ...|++++.+||++
T Consensus       127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCC
Confidence            468999999998765333455556665544333  678899999999954211  11133333   34578999999999


Q ss_pred             CCCHHHHHHHH
Q psy2518         171 DINVNSIFRYL  181 (208)
Q Consensus       171 ~~~i~~~f~~i  181 (208)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99999887643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.16  E-value=6.6e-05  Score=61.44  Aligned_cols=135  Identities=13%  Similarity=0.037  Sum_probs=72.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecC------ccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-------hh
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRD------SFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-------IT   91 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~------~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~~   91 (208)
                      ..+++++|.+++||  +++.+...      .......|  |.......+.++..   +.+.||||......       ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence            35799999999999  34544433      11111111  22222333444432   78999999532221       11


Q ss_pred             Hhhh---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEe
Q psy2518          92 KAYY---RGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTS  167 (208)
Q Consensus        92 ~~~~---~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  167 (208)
                      ...+   +..+.++++.+..+..-+..+..    +..... +.|++++.||.|..+... .....+.+.+..|......+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~-~~~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTK-LEKADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-GGGHHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCccccccc-HHHHHHHHHHhcCCccCCCC
Confidence            1222   67899999998743211111100    111111 579999999999855322 23334455666666555555


Q ss_pred             cCCC
Q psy2518         168 VKED  171 (208)
Q Consensus       168 a~~~  171 (208)
                      +...
T Consensus       312 ~~~~  315 (369)
T 3ec1_A          312 KRYA  315 (369)
T ss_dssp             GGGT
T ss_pred             chhh
Confidence            5443

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.07  E-value=3.1e-05  Score=63.39  Aligned_cols=134  Identities=11%  Similarity=0.045  Sum_probs=67.7

Q ss_pred             eeeEEEecCceEEE--EEEeeecCcc-----ccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc----hhHh--
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSF-----EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA----ITKA--   93 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f-----~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~----~~~~--   93 (208)
                      ..+++++|.+++||  +++.+.....     .....+..|.......+.++..   +.++||||......    +...  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            35799999999999  3454443311     1111222222222333444433   78999999633221    1111  


Q ss_pred             --h--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518          94 --Y--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV  168 (208)
Q Consensus        94 --~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  168 (208)
                        +  .+..+.++++.+..+..-+..+..    +..... ..|++++.||.|..+... ..+..+.+.+..|......++
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence              1  357788888888643211111100    111111 679999999999865322 233344455555654444443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.06  E-value=0.0034  Score=53.31  Aligned_cols=102  Identities=11%  Similarity=0.093  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCChhhhcc-hh---Hhh--hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCE-EEEEeCCCCCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDA-IT---KAY--YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQS  145 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pi-ivvgnK~Dl~~~~  145 (208)
                      .+.+.|+||+|...... +.   ...  ...+|.+++|.|.+........   ...+..   ..|+ .+|.||+|.....
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~~~---~~~i~gvVlNK~D~~~~~  256 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAFKD---KVDVASVIVTKLDGHAKG  256 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHHHH---HHCCCCEEEECTTSCCCC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHHHh---hcCceEEEEeCCccccch
Confidence            35689999999643211 11   111  2378999999999875432211   222222   2464 7889999975321


Q ss_pred             CCCHHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q psy2518         146 VVAPEEADLLSRALGCRL------------------MRTSVKEDIN-VNSIFRYLTTK  184 (208)
Q Consensus       146 ~v~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-i~~~f~~i~~~  184 (208)
                          ..+.......+.++                  +.+||..|.| +.++++.+.+.
T Consensus       257 ----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          257 ----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             ----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence                11223344455443                  3468889988 98888888765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.03  E-value=0.0062  Score=50.59  Aligned_cols=60  Identities=10%  Similarity=-0.006  Sum_probs=30.5

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHH-------HHHhCCeEEEEec
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLL-------SRALGCRLMRTSV  168 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~-------~~~~~~~~~e~Sa  168 (208)
                      +++++.|....-+-.++ .++..+   ....|+|+|.||+|...     .++...+       ....|++++.+|.
T Consensus       151 ~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~Lt-----~~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADAIS-----KSELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             EEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGGSC-----HHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             EEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhccc-----hHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence            35566666544333221 222222   23789999999999743     3332222       1224667777775

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.96  E-value=0.0011  Score=49.90  Aligned_cols=48  Identities=35%  Similarity=0.692  Sum_probs=39.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ...+..+.|.+||||||++|+.+.+.++.+..++...+......+|..
T Consensus        56 ~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~  103 (216)
T 4dkx_A           56 YLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQ  103 (216)
T ss_dssp             ECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHT
T ss_pred             EecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHH
Confidence            467888999999999999999999999999999887666555555554

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.87  E-value=0.0025  Score=49.71  Aligned_cols=44  Identities=11%  Similarity=0.120  Sum_probs=26.8

Q ss_pred             cCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCC
Q psy2518          96 RGAQACVITFSTI-DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLD  143 (208)
Q Consensus        96 ~~~d~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~  143 (208)
                      ..+++++++.|.. .+-+-.. ...+..+.+   ..++++|.+|+|...
T Consensus       110 aRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt  154 (270)
T 3sop_A          110 TRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADTMT  154 (270)
T ss_dssp             CSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred             heeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence            3478889998854 2222222 223333433   378999999999743

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.41  E-value=0.00026  Score=59.69  Aligned_cols=101  Identities=10%  Similarity=-0.019  Sum_probs=56.7

Q ss_pred             ceeeeEEEecCceEEEE-EEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh--hcchh--------Hh
Q psy2518          25 DAITKAYYRGAQACVIT-FSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--FDAIT--------KA   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~-~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--~~~~~--------~~   93 (208)
                      ....+|+++|..|+||+ +-+.+.........+|.+...........+......+||..|.+.  .+..+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34578999999999993 322222222111222222110000001112223457899999843  33333        55


Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENE  126 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~  126 (208)
                      ++..+++.++|+|.++. +.+....|+..+.+.
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            67778898999999987 666677787766654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.28  E-value=0.014  Score=48.33  Aligned_cols=153  Identities=12%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             eeEEEecCceEEE-EEEeeecCccccc-ccccc-ccce--eeEEEEECCeEEEEEEEeCCChhhhcchhHh-----hhcC
Q psy2518          28 TKAYYRGAQACVI-TFSTIDRDSFEAA-HSWKM-KVSI--KRTIKECEGEEVRLMLWDTAGQEEFDAITKA-----YYRG   97 (208)
Q Consensus        28 ~ki~~vG~s~~gk-~~~~~~~~~f~~~-~~~t~-~~~~--~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~-----~~~~   97 (208)
                      ..+.++|.+|+|| ++.+.+.+-..+. -.-++ +.+.  .....+ ....-.+.+||++|..........     -+..
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~  148 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE  148 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence            4688999999999 4433333322111 00011 1010  011111 111114789999985321111111     2334


Q ss_pred             CcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-------CCCCCCHHHHHHHHH--------HhC
Q psy2518          98 AQACVITFSTI--DRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-------DQSVVAPEEADLLSR--------ALG  160 (208)
Q Consensus        98 ~d~ii~v~d~~--~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-------~~~~v~~~~~~~~~~--------~~~  160 (208)
                      .+.+++ +|..  .+.-..    +...+...  +.|+++|.||.|+.       .-.....++..+..+        +.+
T Consensus       149 ~~~~~~-lS~G~~~kqrv~----la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          149 YDFFII-ISATRFKKNDID----IAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             CSEEEE-EESSCCCHHHHH----HHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCeEE-eCCCCccHHHHH----HHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455555 7765  332221    12222222  57999999999862       112233333332222        222


Q ss_pred             ---CeEEEEec--CCCCCHHHHHHHHHHHHHHH
Q psy2518         161 ---CRLMRTSV--KEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       161 ---~~~~e~Sa--~~~~~i~~~f~~i~~~~~~~  188 (208)
                         ...+.+|+  ..+.|++++.+.+.+.+...
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg  254 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  254 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence               26788999  67778999999988776543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.16  E-value=0.00093  Score=51.95  Aligned_cols=55  Identities=9%  Similarity=0.012  Sum_probs=30.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE   86 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~   86 (208)
                      ++++++|.+++||  +++++...... ...++.|+......+..+.   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            6999999999999  34555444432 3344455444333343332   479999999654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=92.67  E-value=0.31  Score=35.42  Aligned_cols=84  Identities=13%  Similarity=0.065  Sum_probs=54.6

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCEEEEEeCCCCCCCCCCCHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC---GEIPTVLVQNKIDLLDQSVVAPE  150 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~piivvgnK~Dl~~~~~v~~~  150 (208)
                      +.+.|.|+++..  .......+..+|.++++...+...  ..+...+..+.+..   ++.++.+|.|++|...  . ..+
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~-~~~  148 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--T-MLN  148 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--E-EEH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--h-HHH
Confidence            567899998764  233455667799999999887544  66666666665443   2567789999998532  1 223


Q ss_pred             HHHHHHHHhCCeEE
Q psy2518         151 EADLLSRALGCRLM  164 (208)
Q Consensus       151 ~~~~~~~~~~~~~~  164 (208)
                      +..+..+.++.+++
T Consensus       149 ~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          149 VLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHTCCBC
T ss_pred             HHHHHHHHcCCcee
Confidence            44555555665444

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=92.44  E-value=0.018  Score=46.22  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=25.8

Q ss_pred             ceEEEEEeeccCccccce---eeeEEEecCceEEEEE
Q psy2518           9 EEVRLMLWDTAGQEEFDA---ITKAYYRGAQACVITF   42 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~---~~ki~~vG~s~~gk~~   42 (208)
                      ..+.|.+||||||++|+.   ....++.|..++.-.+
T Consensus        44 ~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~   80 (331)
T 3r7w_B           44 TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI   80 (331)
T ss_dssp             SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred             cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence            458999999999999974   2366677877766544

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=92.20  E-value=0.012  Score=46.14  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=29.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE   85 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~   85 (208)
                      ...++++++|.+++||  +++++...... ...++.|+......+.++.   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIA-KTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCcee-ecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            3468899999999999  34554443321 1222222221122233332   47899999964

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.14  E-value=0.86  Score=33.54  Aligned_cols=86  Identities=16%  Similarity=0.081  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCCh-hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          73 EVRLMLWDTAGQ-EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        73 ~~~l~i~Dt~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      .+.+.|.||++. ..  ......+..+|.++++...+ ..+...+...+..+.+.. +.++.+|.|+.|....  ...++
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~--~~~~~  140 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPS--KDGDE  140 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTS--CHHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccc--hHHHH
Confidence            345789999875 32  23455677899999999876 566666666666665533 4668899999985320  12344


Q ss_pred             HHHHHHHhCCeEE
Q psy2518         152 ADLLSRALGCRLM  164 (208)
Q Consensus       152 ~~~~~~~~~~~~~  164 (208)
                      ..+..++++.+++
T Consensus       141 ~~~~l~~~g~~v~  153 (209)
T 3cwq_A          141 ARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHTTCCBC
T ss_pred             HHHHHHHcCCchh
Confidence            5555555665443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.89  E-value=0.6  Score=38.89  Aligned_cols=86  Identities=12%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             EEEEEEeCCChhhh-----cchhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEF-----DAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV  147 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v  147 (208)
                      +.+.|.||+|....     ..+.. .....+|.+++|.|.+......+..   ..+...  -.+..+|.||.|...    
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~--~~i~gVIlTKlD~~~----  253 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA--TPIGSIIVTKLDGSA----  253 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS--CTTEEEEEECCSSCS----
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh--CCCeEEEEECCCCcc----
Confidence            56889999995321     11111 1233689999999988654432221   222221  245568899999743    


Q ss_pred             CHHHHHHHHHHhCCeEEEEec
Q psy2518         148 APEEADLLSRALGCRLMRTSV  168 (208)
Q Consensus       148 ~~~~~~~~~~~~~~~~~e~Sa  168 (208)
                      ....+.......+.++..++.
T Consensus       254 ~gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          254 KGGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEC
T ss_pred             cccHHHHHHHHHCCCEEEEEc
Confidence            233455566677888877775

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=91.22  E-value=0.96  Score=35.47  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=56.0

Q ss_pred             EEEEEEEeCCChhh--hc-chhH-----hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCC
Q psy2518          73 EVRLMLWDTAGQEE--FD-AITK-----AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLD  143 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~--~~-~~~~-----~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~  143 (208)
                      .+.+.|.||+|...  .. .+..     .....+|.+++|.|.......   ......+..   ..| ..+|.||.|...
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            35689999999755  21 1111     124578999999998753221   111222222   355 678899999632


Q ss_pred             CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518         144 QSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       144 ~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                          ....+...+...+.++..++  .|+++++
T Consensus       254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 ----KGGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence                23445667777888887776  5666654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=90.04  E-value=0.095  Score=42.39  Aligned_cols=35  Identities=17%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+.+.+||+|||++|+.....++-|..++.-.+.
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~d  215 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAA  215 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEE
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEE
Confidence            67899999999999999999999998888776544

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=89.98  E-value=3.1  Score=30.84  Aligned_cols=87  Identities=9%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEE  151 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~  151 (208)
                      .+.+.|.|+++...  ......+..+|.++++...+ ..+...+...+..+.+... ...+-+|.|+++...  ....  
T Consensus       118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--  190 (245)
T 3ea0_A          118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--  190 (245)
T ss_dssp             HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH--
T ss_pred             hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH--
Confidence            35678999987532  34455677899999999876 6777777777777765543 455788899998533  2333  


Q ss_pred             HHHHHHHhCCeEEEEe
Q psy2518         152 ADLLSRALGCRLMRTS  167 (208)
Q Consensus       152 ~~~~~~~~~~~~~e~S  167 (208)
                       +.+.+.++.+++.+-
T Consensus       191 -~~~~~~~~~~v~~~i  205 (245)
T 3ea0_A          191 -DEIEKVIGRPISKRI  205 (245)
T ss_dssp             -HHHHHHHTSCEEEEE
T ss_pred             -HHHHHHhCCCeEEEC
Confidence             334556777766553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=89.78  E-value=0.56  Score=38.95  Aligned_cols=84  Identities=10%  Similarity=0.039  Sum_probs=47.4

Q ss_pred             EEEEEEEeCCChhhhcc-h---hHh--hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-C-EEEEEeCCCCCCC
Q psy2518          73 EVRLMLWDTAGQEEFDA-I---TKA--YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEI-P-TVLVQNKIDLLDQ  144 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~-~---~~~--~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-iivvgnK~Dl~~~  144 (208)
                      .+.+.|.||+|...... +   ...  ....+|.+++|.|.+.....   ....   ....... | ..+|.||+|....
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~---~~~~~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQA---KAFKEAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHH---HHHHTTSCSCEEEEEECSSSCST
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHH---HHHhhcccCCeEEEEeCCCCccc
Confidence            35679999999643211 1   111  12368999999998765421   1112   2222234 5 7889999997431


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEE
Q psy2518         145 SVVAPEEADLLSRALGCRLMRT  166 (208)
Q Consensus       145 ~~v~~~~~~~~~~~~~~~~~e~  166 (208)
                          ...+.......+.++..+
T Consensus       254 ----~g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 ----GGGALSAVAETKAPIKFI  271 (432)
T ss_dssp             ----THHHHHHHHHSSCCEEEE
T ss_pred             ----hHHHHHHHHHHCCCEEEe
Confidence                123344566666665444

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=89.22  E-value=0.16  Score=44.07  Aligned_cols=66  Identities=23%  Similarity=0.254  Sum_probs=34.8

Q ss_pred             EEEEEeCCCh-------------hhhcchhHhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          75 RLMLWDTAGQ-------------EEFDAITKAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        75 ~l~i~Dt~g~-------------~~~~~~~~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.+.|.||.             .....+...+++....+++++-..+.+ .-.....+...+...  ..+.|+|.||.|
T Consensus       148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~--g~rtI~VlTK~D  225 (608)
T 3szr_A          148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE--GDRTIGILTKPD  225 (608)
T ss_dssp             CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS--CCSEEEEEECGG
T ss_pred             ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc--CCceEEEecchh
Confidence            3788998852             233344555555554444444443322 111122333333211  578999999999


Q ss_pred             CC
Q psy2518         141 LL  142 (208)
Q Consensus       141 l~  142 (208)
                      +.
T Consensus       226 lv  227 (608)
T 3szr_A          226 LV  227 (608)
T ss_dssp             GS
T ss_pred             hc
Confidence            74

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=88.31  E-value=0.1  Score=41.79  Aligned_cols=33  Identities=12%  Similarity=0.107  Sum_probs=29.2

Q ss_pred             eEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518          10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus        10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .+.+++||++||+++++.-.-++-|..++.-.+
T Consensus       166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~  198 (327)
T 3ohm_A          166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLV  198 (327)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEE
T ss_pred             ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEE
Confidence            478999999999999999999999988887644

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=88.09  E-value=0.17  Score=41.58  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=29.6

Q ss_pred             EEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518          11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus        11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      +.+.+||+|||++|+.....++-|..++.-.+.
T Consensus       217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~d  249 (402)
T 1azs_C          217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA  249 (402)
T ss_dssp             EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEE
T ss_pred             ccceecccchhhhhhhhhHhhccCCCEEEEEEE
Confidence            789999999999999999999999988876554

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=87.17  E-value=0.16  Score=37.55  Aligned_cols=40  Identities=30%  Similarity=0.596  Sum_probs=30.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      ..++..+.+.+||++|+++|....+.++.+..++...+..
T Consensus        69 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~  108 (214)
T 3q3j_B           69 ETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDI  108 (214)
T ss_dssp             EC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEET
T ss_pred             EECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEEC
Confidence            4567788999999999999988888777777776655543

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=86.65  E-value=0.4  Score=34.99  Aligned_cols=39  Identities=46%  Similarity=0.819  Sum_probs=27.7

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.+.+||++|+++|......++.+..++...+.
T Consensus        51 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d   89 (212)
T 2j0v_A           51 AVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFS   89 (212)
T ss_dssp             ECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEE
T ss_pred             EECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEE
Confidence            356777899999999999998877766666666554443

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=86.61  E-value=0.52  Score=34.60  Aligned_cols=35  Identities=34%  Similarity=0.759  Sum_probs=14.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      ..++..+.+.+||++|+++|......++-+..++.
T Consensus        76 ~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           76 QVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             EETTEEEEEEEEEC---------------CEEEEE
T ss_pred             EECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            34667789999999999988777666555544444

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=86.36  E-value=0.14  Score=41.12  Aligned_cols=35  Identities=14%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             ceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           9 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         9 ~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+.+++||++||+++++.-.-++-|..++.-.+.
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~d  193 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTS  193 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEE
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEE
Confidence            35789999999999999999999999888876544

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=86.34  E-value=0.38  Score=34.24  Aligned_cols=37  Identities=27%  Similarity=0.555  Sum_probs=26.7

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT   41 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~   41 (208)
                      ..++..+.+.+||++|+++|....+.++-+..++...
T Consensus        49 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   85 (184)
T 1m7b_A           49 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   85 (184)
T ss_dssp             ECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             EECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEE
Confidence            3466788999999999999887766655555555433

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=85.88  E-value=2.7  Score=31.83  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=46.9

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.+.|.|+++...  ......+..+|.++++...+ ..+...+...+..+.+...+.++.+|.|+++
T Consensus       144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLNLFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            35678999987542  23455667799999999986 4566777776666666554678889999984

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=85.74  E-value=3.1  Score=34.49  Aligned_cols=91  Identities=10%  Similarity=0.054  Sum_probs=54.7

Q ss_pred             EEEEEEEeCCChhh--h-----cchhH-hhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCC
Q psy2518          73 EVRLMLWDTAGQEE--F-----DAITK-AYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQ  144 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~--~-----~~~~~-~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~  144 (208)
                      .+.+.|.||+|...  .     ..+.. ......+.+++|.|........+.   ...+...  -.+..+|.||.|... 
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~--~~~~gVIlTKlD~~a-  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA--SPIGSVIITKMDGTA-  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH--CSSEEEEEECGGGCS-
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc--cCCcEEEEecccccc-
Confidence            35577999999533  1     11111 012256899999999865433222   2222222  246788999999632 


Q ss_pred             CCCCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy2518         145 SVVAPEEADLLSRALGCRLMRTSVKEDINV  174 (208)
Q Consensus       145 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i  174 (208)
                         .-..+.......+.++..++.  |+++
T Consensus       253 ---~~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          253 ---KGGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence               334556667778999888876  5554

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=85.32  E-value=0.45  Score=34.81  Aligned_cols=38  Identities=29%  Similarity=0.601  Sum_probs=27.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      ..++..+.+.+||++|+++|....+.++.+..++...+
T Consensus        70 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~  107 (205)
T 1gwn_A           70 EIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF  107 (205)
T ss_dssp             ESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             EECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEE
Confidence            34667889999999999998877666555555554433

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=85.29  E-value=0.44  Score=34.19  Aligned_cols=39  Identities=38%  Similarity=0.689  Sum_probs=29.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.+.+||++|+++|......++.+..++...+.
T Consensus        65 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d  103 (194)
T 3reg_A           65 KYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFA  103 (194)
T ss_dssp             EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEE
T ss_pred             EECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEE
Confidence            356778889999999999998777776666666654443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=85.15  E-value=0.89  Score=31.36  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=17.2

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.+.+||++|++++....+.++.+..++...+.
T Consensus        43 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (166)
T 3q72_A           43 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   81 (166)
T ss_dssp             EETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred             EECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence            456778899999999999988887777766666554443

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=85.15  E-value=0.35  Score=39.02  Aligned_cols=34  Identities=15%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518          10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus        10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+.+.+||++||++++.....++-|..++.-.+.
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~d  225 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVA  225 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEE
Confidence            5789999999999999999999999888876544

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=84.96  E-value=0.31  Score=34.81  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=28.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      ..++..+.+.+||++|+++|......++.+..++.-.+
T Consensus        68 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  105 (198)
T 3t1o_A           68 EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVA  105 (198)
T ss_dssp             CSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEE
T ss_pred             cccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEE
Confidence            45677889999999999988887776666655554433

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=84.78  E-value=0.48  Score=33.47  Aligned_cols=36  Identities=39%  Similarity=0.756  Sum_probs=25.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..++..+.+.+||++|+++|......++-+..++..
T Consensus        47 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A           47 MVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             EECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            356778899999999999887665555544444443

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=84.38  E-value=5.9  Score=29.11  Aligned_cols=84  Identities=8%  Similarity=0.101  Sum_probs=52.5

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA  152 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~  152 (208)
                      .+.+.|.|+++...  ......+..+|.++++...+ ..+...+...+..+.+. +....-+|.|+.+..... ..   .
T Consensus       111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~~-~~---~  182 (237)
T 1g3q_A          111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA-GLAILGFVLNRYGRSDRD-IP---P  182 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT-TCEEEEEEEEEETSCTTC-CC---H
T ss_pred             cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC-CCceEEEEEecCCcccch-hH---H
Confidence            35678999987533  33455678899999999876 56676666666666554 223456788999853322 22   2


Q ss_pred             HHHHHHhCCeEE
Q psy2518         153 DLLSRALGCRLM  164 (208)
Q Consensus       153 ~~~~~~~~~~~~  164 (208)
                      ..+.+..+.+++
T Consensus       183 ~~~~~~~~~~~~  194 (237)
T 1g3q_A          183 EAAEDVMEVPLL  194 (237)
T ss_dssp             HHHHHHHCSCEE
T ss_pred             HHHHHHhCccce
Confidence            334455666543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=84.35  E-value=0.5  Score=34.08  Aligned_cols=36  Identities=39%  Similarity=0.656  Sum_probs=25.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..++..+.+.+||++|+++|......++.+..++..
T Consensus        62 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   97 (201)
T 2q3h_A           62 SVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL   97 (201)
T ss_dssp             EETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred             EECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence            345677899999999999888766555545444443

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=84.09  E-value=4  Score=30.89  Aligned_cols=91  Identities=11%  Similarity=0.063  Sum_probs=53.1

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCC----CC-
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLD----QS-  145 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~----~~-  145 (208)
                      ..+.+.|.||++...........+..+|.++++...+ ..+...+...+..+.+.  +.+++ +|.|+.|...    ++ 
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~gvV~N~~~~~~~~~~~~~  203 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET--NTSVLGLVENMSYFVCPNCGHKS  203 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT--TCCEEEEEETTCCEECTTTCCEE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC--CCCEEEEEECCCccCCccccccc
Confidence            3466889999875321111112233689999998776 44566666666655543  56776 8899987411    11 


Q ss_pred             CC-CHHHHHHHHHHhCCeEEE
Q psy2518         146 VV-APEEADLLSRALGCRLMR  165 (208)
Q Consensus       146 ~v-~~~~~~~~~~~~~~~~~e  165 (208)
                      .. ..+..+.+.+.++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          204 YIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             CTTCCCCHHHHHHHTTCSEEE
T ss_pred             ccccccHHHHHHHHcCCCeEE
Confidence            11 122345566777877654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=84.05  E-value=0.76  Score=31.81  Aligned_cols=35  Identities=43%  Similarity=0.826  Sum_probs=19.5

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      ..++..+.+.+||++|++++......++-+..++.
T Consensus        49 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A           49 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             ESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             EECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            34567889999999999887776655554444443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=83.90  E-value=0.83  Score=32.02  Aligned_cols=36  Identities=50%  Similarity=0.923  Sum_probs=19.5

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      ..++..+.+.+||++|++++.....-++.+..++.-
T Consensus        54 ~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (180)
T 2g6b_A           54 DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   89 (180)
T ss_dssp             EETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEE
Confidence            346677899999999999887766655555444443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=83.70  E-value=0.53  Score=33.71  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=23.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC   38 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~   38 (208)
                      .+++..+.+.+||++|+++|....+.++.+..++
T Consensus        60 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           60 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             EECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            3566778999999999998875554444444333

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=83.52  E-value=5.7  Score=29.83  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=52.8

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEA  152 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~  152 (208)
                      .+.+.|.|+++...  ......+..+|.++++...+ ..+...+...+..+.+. +..+.-+|.|+.+....    ....
T Consensus       110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~vv~N~~~~~~~----~~~~  181 (263)
T 1hyq_A          110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL-GTKVLGVVVNRITTLGI----EMAK  181 (263)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCEEEEEEEEEECTTTH----HHHH
T ss_pred             hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc-CCCeeEEEEccCCcccc----cchH
Confidence            35678999987433  33445567899999998765 45666666666666554 22445678899985321    1344


Q ss_pred             HHHHHHhCCeEE
Q psy2518         153 DLLSRALGCRLM  164 (208)
Q Consensus       153 ~~~~~~~~~~~~  164 (208)
                      .++.+..+.+++
T Consensus       182 ~~~~~~~~~~~~  193 (263)
T 1hyq_A          182 NEIEAILEAKVI  193 (263)
T ss_dssp             HHHHHHTTSCEE
T ss_pred             HHHHHHhCCCeE
Confidence            555566676543

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=82.95  E-value=4.2  Score=30.62  Aligned_cols=67  Identities=13%  Similarity=0.095  Sum_probs=42.3

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHH---Hhhc-CCCCEE-EEEeCCCC
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---ENEC-GEIPTV-LVQNKIDL  141 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~---~~~~-~~~pii-vvgnK~Dl  141 (208)
                      ..+.+.|.||++....  .....+..+|.++++...+. .++..+...+..+   .+.. ++.+++ +|.|+.|.
T Consensus       110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~  181 (257)
T 1wcv_1          110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDG  181 (257)
T ss_dssp             TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred             cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence            3456889999875322  23345567999999999774 4555444444333   3322 256664 88999985

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=82.83  E-value=0.68  Score=32.62  Aligned_cols=39  Identities=31%  Similarity=0.565  Sum_probs=29.0

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.+.+||++|+++|....+.++.+..++...+.
T Consensus        48 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   86 (181)
T 3t5g_A           48 TVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS   86 (181)
T ss_dssp             EETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEE
T ss_pred             EECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEE
Confidence            456777899999999999988777766666666554443

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=82.30  E-value=0.7  Score=33.46  Aligned_cols=35  Identities=51%  Similarity=1.033  Sum_probs=26.1

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      .++..+.+.+||++|+++|.....-++-+..++..
T Consensus        52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil   86 (206)
T 2bcg_Y           52 LDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   86 (206)
T ss_dssp             ETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             ECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence            45677899999999999988776665555555443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=82.13  E-value=0.64  Score=32.81  Aligned_cols=34  Identities=53%  Similarity=1.016  Sum_probs=16.4

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      .++..+.+.+||++|+++|......++.+..++.
T Consensus        52 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C           52 LDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             ETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             ECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            4567789999999999888766555444444443

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=81.76  E-value=0.41  Score=34.76  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=19.4

Q ss_pred             EEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518          11 VRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus        11 ~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      +.+.+||++|+++++...+.++.+..++.-.+
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  100 (198)
T 1f6b_A           69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLV  100 (198)
T ss_dssp             EEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred             EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence            78999999999988876665555555554433

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=81.54  E-value=0.36  Score=35.16  Aligned_cols=35  Identities=34%  Similarity=0.690  Sum_probs=24.2

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      ..++..+.+.+||++|+++|......++.+..++.
T Consensus        72 ~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             ECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            45677888999999999888766555554444443

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=81.38  E-value=12  Score=27.46  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=44.4

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.+.|.||++....  .....+..+|.++++...+ ..++..+......+.+. +-..+.+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~-~~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL-GIKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH-TCSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc-CCccEEEEEeCCC
Confidence            456789999875432  4456678899999999875 56676666655533333 2355778899998

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=81.32  E-value=0.37  Score=34.80  Aligned_cols=33  Identities=30%  Similarity=0.530  Sum_probs=24.7

Q ss_pred             CceEEEEEeeccCccccceee---eEEEecCceEEE
Q psy2518           8 GEEVRLMLWDTAGQEEFDAIT---KAYYRGAQACVI   40 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~---ki~~vG~s~~gk   40 (208)
                      +..+.+.+||++|+++|....   +.++.+..++..
T Consensus        66 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~  101 (196)
T 3llu_A           66 SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIY  101 (196)
T ss_dssp             TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEE
T ss_pred             CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEE
Confidence            667899999999999887766   555556555543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=81.31  E-value=0.36  Score=34.62  Aligned_cols=37  Identities=22%  Similarity=0.508  Sum_probs=27.3

Q ss_pred             CCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           7 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         7 ~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ++..+.+.+||++|++++....+.++-+..++...+.
T Consensus        59 ~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   95 (199)
T 4bas_A           59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD   95 (199)
T ss_dssp             EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            3456789999999999998887766666666554444

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=81.19  E-value=0.69  Score=34.10  Aligned_cols=37  Identities=51%  Similarity=0.991  Sum_probs=28.0

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      .++..+.+.+||++|+++|......++-+..++...+
T Consensus        57 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~   93 (223)
T 3cpj_B           57 IEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVY   93 (223)
T ss_dssp             ETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEE
T ss_pred             ECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEE
Confidence            4566789999999999999887777666666555433

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=80.97  E-value=0.97  Score=32.53  Aligned_cols=38  Identities=45%  Similarity=0.974  Sum_probs=28.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF   42 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~   42 (208)
                      ..++..+.+.+||++|++++......++-+..++...+
T Consensus        76 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~  113 (199)
T 3l0i_B           76 ELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVY  113 (199)
T ss_dssp             EETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC
T ss_pred             EECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEE
Confidence            34667789999999999999998888887777765533

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=80.71  E-value=0.84  Score=32.99  Aligned_cols=34  Identities=38%  Similarity=0.785  Sum_probs=24.3

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV   39 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~g   39 (208)
                      .++..+.+.+||++|+++|....+.++-+..++.
T Consensus        68 ~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           68 VDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             ETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            4566789999999999888766665554444443

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=80.67  E-value=0.64  Score=37.63  Aligned_cols=34  Identities=15%  Similarity=0.140  Sum_probs=22.0

Q ss_pred             eEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518          10 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus        10 ~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+.+.+||++||++++.....++-|..++.-.+.
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~d  233 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVS  233 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEE
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEE
Confidence            4789999999999999999988888887765443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=80.66  E-value=0.76  Score=32.84  Aligned_cols=35  Identities=49%  Similarity=1.069  Sum_probs=25.7

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      .++..+.+.+||++|+++|....+.++-+..++..
T Consensus        65 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   99 (191)
T 2a5j_A           65 IDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   99 (191)
T ss_dssp             ETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             ECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence            45677899999999999888776655555555443

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=80.60  E-value=0.66  Score=33.83  Aligned_cols=35  Identities=54%  Similarity=1.025  Sum_probs=25.2

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI   40 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk   40 (208)
                      .++..+.+.+||++|+++|......++.+..++..
T Consensus        70 ~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           70 INGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             ETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             ECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            45667899999999999887766555555554443

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=80.19  E-value=0.43  Score=33.65  Aligned_cols=33  Identities=45%  Similarity=0.831  Sum_probs=16.9

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceE
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC   38 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~   38 (208)
                      .++..+.+.+||++|+++|......++-+..++
T Consensus        51 ~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D           51 VNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             -------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             ECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            456678888999999988875555444444333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	208
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-22
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-09
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	2e-21
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	6e-11
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-21
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	9e-12
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-20
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-09
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-20
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-06
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-19
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	1e-18
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-04
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-17
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-09
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-17
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	3e-07
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-17
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-07
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	6e-16
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	0.001
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-16
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-14
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-13
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	7e-13
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	9e-13
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	5e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-12
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	5e-04
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-12
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	5e-11
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-09
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-09
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-09
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	8e-09
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-08
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-08
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-08
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-08
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-08
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-07
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	5e-07
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	5e-07
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	6e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-07
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	7e-07
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	8e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-07
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	3e-06
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-06
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	8e-06
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	4e-04
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-04
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-04
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	7e-04
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.001

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 1e-22
 Identities = 49/145 (33%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +  F       + V       E  GE+V+L +WDTAGQE F +IT++YYR A A ++T+ 
Sbjct: 27  QGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD 86

Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
               +SF       +   +    ++ TVLV NKIDL ++  V+ + A+  S A     + 
Sbjct: 87  ITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLE 146

Query: 166 TSVKEDINVNSIFRYLTTKCLSELR 190
           TS KE  NV  +F  L  + +SE R
Sbjct: 147 TSAKESDNVEKLFLDLACRLISEAR 171

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 7  EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
           GE+V+L +WDTAGQE F +IT++YYR A A ++T+     +SF     W
Sbjct: 50 NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 99

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.4 bits (208), Expect = 2e-21
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            D+F +     + +  K    E +G+ ++L +WDTAGQE F  IT AYYRGA   ++ + 
Sbjct: 28  EDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD 87

Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             +  SF    +  +   E+   ++  +++ NK D+ D+  V+ E  + L+   G + M 
Sbjct: 88  ITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFME 147

Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
           TS K +INV + F  L      +++ + ++
Sbjct: 148 TSAKANINVENAFFTLAR----DIKAKMDK 173

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (136), Expect = 6e-11
 Identities = 21/54 (38%), Positives = 33/54 (61%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
           +G+ ++L +WDTAGQE F  IT AYYRGA   ++ +   +  SF+   +W   +
Sbjct: 51  DGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI 104

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.7 bits (206), Expect = 4e-21
 Identities = 41/136 (30%), Positives = 65/136 (47%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            D F  +    + +  K    +  G++V+L +WDTAGQE F  IT AYYRGA   ++ + 
Sbjct: 24  EDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD 83

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
             D  +F     W   V     +   +L+      ++  VV  ++ + L++ LG   + +
Sbjct: 84  ITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIES 143

Query: 167 SVKEDINVNSIFRYLT 182
           S K D NVN IF  L 
Sbjct: 144 SAKNDDNVNEIFFTLA 159

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (142), Expect = 9e-12
 Identities = 22/51 (43%), Positives = 30/51 (58%)

Query: 8  GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
          G++V+L +WDTAGQE F  IT AYYRGA   ++ +   D  +F     W  
Sbjct: 48 GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFK 98

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 4e-20
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 45  IDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT 104
            D           + +  +  + + +G +V+L +WDTAGQE F ++T AYYR A A ++ 
Sbjct: 27  KDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLL 86

Query: 105 FSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRL 163
           +   ++ SF+   +W  ++         + L+ NK+D   + VV  E+ + L++  G   
Sbjct: 87  YDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPF 146

Query: 164 MRTSVKEDINVNSIFRYLTTK 184
           M TS K  +NV+  F  +  +
Sbjct: 147 METSAKTGLNVDLAFTAIAKE 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 9e-09
 Identities = 21/53 (39%), Positives = 34/53 (64%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
            +G +V+L +WDTAGQE F ++T AYYR A A ++ +   ++ SF+   +W  
Sbjct: 51  VDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLT 103

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 8e-20
 Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              F A     + V     I E  G++++L +WDTAGQE F A+T++YYRGA   ++ + 
Sbjct: 26  EKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD 85

Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
              R ++    S               +L+ NK DL  Q  V  EEA   +   G   + 
Sbjct: 86  ITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLE 145

Query: 166 TSVKEDINVNSIFRYLTTK 184
            S K   NV   F     K
Sbjct: 146 ASAKTGENVEDAFLEAAKK 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 33/54 (61%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
            G++++L +WDTAGQE F A+T++YYRGA   ++ +    R ++    SW    
Sbjct: 49  SGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 102

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.1 bits (194), Expect = 4e-19
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            D++   +   + V  K    E +G+ V+L +WDTAGQE F  IT +YYRG+   +I + 
Sbjct: 28  DDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD 87

Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             D++SF       +         +  +LV NK DL D+ VV  + A   + A     + 
Sbjct: 88  VTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLE 147

Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
           TS  +  NV   F  +  +    + QQ   
Sbjct: 148 TSALDSTNVEDAFLTMARQIKESMSQQNLN 177

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 9   EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
           + V+L +WDTAGQE F  IT +YYRG+   +I +   D++SF     W  
Sbjct: 53  KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQ 102

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 1e-18
 Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 1/148 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           R+ F       + V       + +G+ ++  +WDTAGQE +  IT AYYRGA   ++ + 
Sbjct: 26  RNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 85

Query: 107 TIDRDSFEAAHSWKMKVENECGE-IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
                ++E    W  ++ +     I  +LV NK DL     V  +EA   +       + 
Sbjct: 86  IAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIE 145

Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQE 193
           TS  +  NV   F+ + T+    + Q++
Sbjct: 146 TSALDSTNVEEAFKNILTEIYRIVSQKQ 173

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 31/54 (57%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
           +G+ ++  +WDTAGQE +  IT AYYRGA   ++ +      ++E    W  ++
Sbjct: 49  DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL 102

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.1 bits (181), Expect = 2e-17
 Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 1/141 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            DSF  A    + +  K        + ++L +WDTAGQE +  IT AYYRGA   ++ + 
Sbjct: 27  DDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD 86

Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             + +SF                    +LV NK D+ D+ VV+ E    L+  LG     
Sbjct: 87  ITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFE 146

Query: 166 TSVKEDINVNSIFRYLTTKCL 186
            S K++INV   F  L     
Sbjct: 147 ASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 4e-09
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 9  EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 56
          + ++L +WDTAGQE +  IT AYYRGA   ++ +   + +SF A   W
Sbjct: 52 KRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 4e-17
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 2/131 (1%)

Query: 66  IKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV-- 123
               +  +V L LWDTAGQE F ++T A++R A   ++ F    + SF    +W  ++  
Sbjct: 56  GSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQA 115

Query: 124 ENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT 183
              C     VL+ NK DL DQ  V   +A  L+   G     TS     NV      L  
Sbjct: 116 NAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLD 175

Query: 184 KCLSELRQQEE 194
             +  + Q  E
Sbjct: 176 LIMKRMEQCVE 186

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 7   EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
           +  +V L LWDTAGQE F ++T A++R A   ++ F    + SF    +W  
Sbjct: 60  KAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS 111

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (179), Expect = 5e-17
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 1/148 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              F+   +  + V     I    G+ V+L +WDTAGQE F ++T++YYRGA   ++ + 
Sbjct: 27  EKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD 86

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPT-VLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
              R+++ A  +W         +    +L  NK DL     V   EA   ++      + 
Sbjct: 87  ITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLE 146

Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQQE 193
           TS     NV   F     K L+++   E
Sbjct: 147 TSALTGENVEEAFVQCARKILNKIESGE 174

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 20/53 (37%), Positives = 34/53 (64%)

Query: 6   CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
             G+ V+L +WDTAGQE F ++T++YYRGA   ++ +    R+++ A  +W  
Sbjct: 49  VGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 101

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 6e-16
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 1/139 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            DSF+  +   + +         E   +RL LWDTAGQE F ++  +Y R + A V+ + 
Sbjct: 22  YDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD 81

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             + +SF+    W   V  E G    + LV NK DL D+  V+ EE +  ++ L    + 
Sbjct: 82  ITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 141

Query: 166 TSVKEDINVNSIFRYLTTK 184
           TS K   NV  +FR +   
Sbjct: 142 TSAKAGYNVKQLFRRVAAA 160

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 1   MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 60
                 E   +RL LWDTAGQE F ++  +Y R + A V+ +   + +SF+    W    
Sbjct: 39  SKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDD- 97

Query: 61  SIKRTIKECEGEEVRLMLWDT 81
                ++   G +V +ML   
Sbjct: 98  -----VRTERGSDVIIMLVGN 113

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (170), Expect = 7e-16
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 1/146 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              F+  H   + V     +   +G++++L +WDTAGQE F +IT++YYRGA   ++ + 
Sbjct: 25  DKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 84

Query: 107 TIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
              R++F    S  +   ++    +  +L+ NK DL  +  V  EE +  +R  G   M 
Sbjct: 85  ITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFME 144

Query: 166 TSVKEDINVNSIFRYLTTKCLSELRQ 191
           TS K   NV   F     +   +++Q
Sbjct: 145 TSAKTACNVEEAFINTAKEIYRKIQQ 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (162), Expect = 1e-14
 Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            D+F+   +  + V  K      +G + +L +WDTAGQE F  +T +YYRGAQ  ++ + 
Sbjct: 29  DDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD 88

Query: 107 TIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
              RD+F    +W  ++E  C       ++       +   V   E    +R      + 
Sbjct: 89  VTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIE 148

Query: 166 TSVKEDINVNSIFRYLTTKCL 186
            S K    V   F  L  K +
Sbjct: 149 ASAKTCDGVQCAFEELVEKII 169

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%)

Query: 12  RLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
           +L +WDTAGQE F  +T +YYRGAQ  ++ +    RD+F    +W  
Sbjct: 57  KLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 103

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-13
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)

Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--NE 126
            +     L + DTAG E+F ++   Y +  Q  ++ +S +++ SF+     + ++     
Sbjct: 46  VDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR 105

Query: 127 CGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
             ++P +LV NK+DL  +  V+  E   L+   GC  M TS K    V+ +F  +  +
Sbjct: 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 7e-13
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 5/146 (3%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            + F+      + V       E +G  V + +WDTAGQE F ++   +YRG+  C++TFS
Sbjct: 28  TNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFS 87

Query: 107 TIDRDSFEAAHSWKMKVE-----NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
             D  SF+   +WK +        E    P V++ NKID+ ++ V   E           
Sbjct: 88  VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY 147

Query: 162 RLMRTSVKEDINVNSIFRYLTTKCLS 187
               TS K+  NV + F     + L+
Sbjct: 148 PYFETSAKDATNVAAAFEEAVRRVLA 173

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 9e-13
 Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 1/141 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            + F   H   +  S         G+ V L +WDTAGQE F A+   YYR +   ++ + 
Sbjct: 25  ENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYD 84

Query: 107 TIDRDSFEA-AHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             D DSF+   +  K   +    EI   +V NKIDL  +  V+ +EA+  + ++G +   
Sbjct: 85  ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYH 144

Query: 166 TSVKEDINVNSIFRYLTTKCL 186
           TS K++  +  +F  L  + +
Sbjct: 145 TSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 20/58 (34%), Positives = 29/58 (50%)

Query: 1  MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
                 G+ V L +WDTAGQE F A+   YYR +   ++ +   D DSF+   +W  
Sbjct: 42 TKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 99

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 4e-12
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +  F       +  +        +   V+  +WDTAGQE + ++   YYRGAQA ++ + 
Sbjct: 28  KGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYD 87

Query: 107 TIDRDSF-EAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMR 165
             + +SF  A +  K         I   L  NK DL ++  V  +EA   +       M 
Sbjct: 88  ITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFME 147

Query: 166 TSVKEDINVNSIFRYLTTK 184
           TS K  +NVN IF  +  K
Sbjct: 148 TSAKTSMNVNEIFMAIAKK 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 1   MINRICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKM 58
                 +   V+  +WDTAGQE + ++   YYRGAQA ++ +   + +SF  A +W  
Sbjct: 45  TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.3 bits (142), Expect = 6e-12
 Identities = 81/140 (57%), Positives = 98/140 (70%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +  F   +   + V       +   E+VRLMLWDTAGQEEFDAITKAYYRGAQACV+ FS
Sbjct: 24  KGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFS 83

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
           T DR+SFEA  SW+ KV  E G+IPT LVQNKIDLLD S +  EEA+ L++ L  R  RT
Sbjct: 84  TTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRT 143

Query: 167 SVKEDINVNSIFRYLTTKCL 186
           SVKED+NV+ +F+YL  K L
Sbjct: 144 SVKEDLNVSEVFKYLAEKHL 163

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 5e-11
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 7/151 (4%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +  F + +   ++ S  + I   +G   RL + DTAGQEEF A+ + Y R     ++ F+
Sbjct: 28  QSYFVSDYDPTIEDSYTK-ICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFA 86

Query: 107 TIDRDSFEAAHSWKMKVENECGE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164
             DR SF        ++         P VLV NK DL  Q  V   EA     +      
Sbjct: 87  INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF 146

Query: 165 RTSVKEDINVNSIFRYLTTKCLSELRQQEEE 195
             S K  +NV+  F  L       +R+ +E+
Sbjct: 147 EASAKLRLNVDEAFEQLVR----AVRKYQEQ 173

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.5 bits (127), Expect = 1e-09
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 1/139 (0%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            DSF+   +  +  S      + + E  + ++WDTAG E F A+   YYRG+ A +I + 
Sbjct: 26  EDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYD 85

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQ-NKIDLLDQSVVAPEEADLLSRALGCRLMR 165
               ++F    +W  ++         V +  NK DL D   V   +A   + ++    + 
Sbjct: 86  ITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVE 145

Query: 166 TSVKEDINVNSIFRYLTTK 184
           TS K  IN+N +F  ++ +
Sbjct: 146 TSAKNAININELFIEISRR 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 53.0 bits (126), Expect = 1e-09
 Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 2/113 (1%)

Query: 77  MLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV--ENECGEIPTVL 134
            + DTAGQE++ AI   Y+R  +  +  FS  + +SF A   ++ ++    E   +P +L
Sbjct: 55  DILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLL 114

Query: 135 VQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLS 187
           V NK DL D+  V+ EEA   +       + TS K   NV+ +F  L  +  +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 4/142 (2%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            + F       +  +            V+  +WDTAGQE F ++   YYR AQA ++ + 
Sbjct: 25  SNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYD 84

Query: 107 TIDRDSFEAA-HSWKMKVENECGEIPTVLVQNKIDL---LDQSVVAPEEADLLSRALGCR 162
                SF  A H  K   E    +I   LV NKID+     +  VA EE + L+   G  
Sbjct: 85  VTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLL 144

Query: 163 LMRTSVKEDINVNSIFRYLTTK 184
              TS K   NVN +F  +  K
Sbjct: 145 FFETSAKTGENVNDVFLGIGEK 166

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 5/152 (3%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              F   +   +           +   V + +WDTAGQE F ++  A+YRGA  CV+ F 
Sbjct: 24  NKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFD 83

Query: 107 TIDRDSFEAAHSWKMKVENECGE-----IPTVLVQNKIDLLDQSVVAPEEADLLSRALGC 161
               ++F+   SW+ +   +         P V++ NKIDL ++ V               
Sbjct: 84  VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNI 143

Query: 162 RLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
               TS KE INV   F+ +    L +  + E
Sbjct: 144 PYFETSAKEAINVEQAFQTIARNALKQETEVE 175

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 31/155 (20%), Positives = 63/155 (40%), Gaps = 15/155 (9%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            D+F   +   +      ++    G++  L L+DTAGQE++D +    Y      +I FS
Sbjct: 31  NDAFPEEYVPTVFDHYAVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 89

Query: 107 TIDRDSFEAAHSWKMK-VENECGEIPTVLVQNKIDLLDQSV------------VAPEEAD 153
            ++  SF+      +  ++     +P +L+  +IDL D               +  E+  
Sbjct: 90  VVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQ 149

Query: 154 LLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
            L++ +G C  +  S      + ++F       L+
Sbjct: 150 KLAKEIGACCYVECSALTQKGLKTVFDEAIIAILT 184

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 8e-09
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 3/119 (2%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVE--N 125
             +GE   L + DTAGQEE+ A+   Y R  +  +  F+  +  SFE  H ++ +++   
Sbjct: 45  VIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK 104

Query: 126 ECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK 184
           +  ++P VLV NK DL     V   +A  L+R+ G   + TS K    V   F  L  +
Sbjct: 105 DSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 33/155 (21%), Positives = 59/155 (38%), Gaps = 15/155 (9%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
            ++F   +   +           +G+ V L LWDTAGQE++D +    Y      +I FS
Sbjct: 27  TNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFS 85

Query: 107 TIDRDSFEAAHSWKMK-VENECGEIPTVLVQNKIDLLDQSVVAPE------------EAD 153
            +   SFE   +     V + C   P +LV  K+DL D      +            +  
Sbjct: 86  LVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 145

Query: 154 LLSRALG-CRLMRTSVKEDINVNSIFRYLTTKCLS 187
            +++ +G  + +  S      + ++F       L 
Sbjct: 146 AMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 6/141 (4%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAI-TKAYYRGAQACVITF 105
              F       + V  +    + +GE +++ LWDTAGQE F     + YYR   A V  +
Sbjct: 24  AGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVY 83

Query: 106 STIDRDSFEAAHSW--KMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRL 163
              +  SF +  +W  + K      +IP +LV NK DL     V  + A   +      L
Sbjct: 84  DMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPL 143

Query: 164 MRTSVK---EDINVNSIFRYL 181
             TS K   ++ +V +IF  L
Sbjct: 144 FETSAKNPNDNDHVEAIFMTL 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 2/142 (1%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              FE  +   + V +   +       ++  +WDTAGQE+F  +   YY  AQ  +I F 
Sbjct: 25  TGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFD 84

Query: 107 TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRT 166
              R +++   +W   +   C  IP VL  NK+D+ D+ V A        R    +    
Sbjct: 85  VTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF--HRKKNLQYYDI 142

Query: 167 SVKEDINVNSIFRYLTTKCLSE 188
           S K + N    F +L  K + +
Sbjct: 143 SAKSNYNFEKPFLWLARKLIGD 164

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 3e-08
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 14/140 (10%)

Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK-VENEC 127
             GE   L L+DTAGQE++D +    Y      ++ FS +   SFE      +  + + C
Sbjct: 46  IGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC 105

Query: 128 GEIPTVLVQNKIDLLDQSVVA------------PEEADLLSRALGCRL-MRTSVKEDINV 174
            + P +LV  +IDL D                 PE A+ L+R L     +  S      +
Sbjct: 106 PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGL 165

Query: 175 NSIFRYLTTKCLSELRQQEE 194
            ++F       L     ++ 
Sbjct: 166 KNVFDEAILAALEPPEPKKS 185

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 7e-08
 Identities = 19/130 (14%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            +I   ++  E + +   +WD  GQ++   + + Y++  Q  +    + DR+    A   
Sbjct: 30  PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREE 89

Query: 120 KMKVENECGEIPTVLV-----QNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINV 174
            M++  E      VL+     Q+  + ++ + +  +      R     +  T       +
Sbjct: 90  LMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGL 149

Query: 175 NSIFRYLTTK 184
                +L+ +
Sbjct: 150 YEGLDWLSNQ 159

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 4/141 (2%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
           +  F   +   ++ S ++ + E + ++  L + DTAG E+F A+   Y +  Q   + +S
Sbjct: 25  QGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYS 83

Query: 107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRL 163
              + +F      + ++       ++P +LV NK DL D+ VV  E+   L+R    C  
Sbjct: 84  ITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAF 143

Query: 164 MRTSVKEDINVNSIFRYLTTK 184
           + +S K  INVN IF  L  +
Sbjct: 144 LESSAKSKINVNEIFYDLVRQ 164

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 3/117 (2%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV---E 124
            C+     L + DT G  +F A+ +       A ++ +S   R S E       ++   +
Sbjct: 44  SCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK 103

Query: 125 NECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL 181
            +   IP +LV NK D      V   EA+ L+R   C  M TS K + NV  +F+ L
Sbjct: 104 GDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 45.7 bits (107), Expect = 5e-07
 Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 54  HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF 113
               +  +    IK  + +  +L +WD  GQ +     ++Y+      +    + DR  F
Sbjct: 40  DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRF 99

Query: 114 EAAHSWKMKV--ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSV 168
           E       ++  E +   +P ++  NK DLL     S +A        R    ++   S 
Sbjct: 100 EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSA 159

Query: 169 KEDINVNSIFRYL 181
                V     ++
Sbjct: 160 LTGEGVQDGMNWV 172

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 6e-07
 Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 14/133 (10%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMK-VENE 126
           E +G++V L LWDTAG E++D +    Y      ++ FS    DS E         V++ 
Sbjct: 44  EVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF 103

Query: 127 CGEIPTVLVQNKIDLLDQSVV------------APEEADLLSRALGC-RLMRTSVKEDIN 173
           C  +P +LV NK DL +                 PEE   ++  +G    M  S K    
Sbjct: 104 CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDG 163

Query: 174 VNSIFRYLTTKCL 186
           V  +F   T   L
Sbjct: 164 VREVFEMATRAAL 176

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 8/148 (5%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLM-LWDTAGQEEFDAITKAYYRGAQACVITF 105
            D +   +   +           +G++V  M +WDTAGQE F ++  A+YRGA  CV+ +
Sbjct: 24  NDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVY 83

Query: 106 STIDRDSFEAAHSWKMK-----VENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL- 159
              +  SFE   SW+ +       N     P V++ NKID  +   +  E++        
Sbjct: 84  DVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL 143

Query: 160 -GCRLMRTSVKEDINVNSIFRYLTTKCL 186
               L  TS K  INV++ F  +    L
Sbjct: 144 GDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 7e-07
 Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 65  TIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV- 123
            ++    + ++L +WD  GQ       + YY    A +    + D+D    A      + 
Sbjct: 52  NVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 111

Query: 124 -ENECGEIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR 179
            E E  +   ++  NK D       S V+ E   +  +     ++ +S  +   +     
Sbjct: 112 QEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLD 171

Query: 180 YLTTKCLSELRQQE 193
           +L    +  +++++
Sbjct: 172 WL----IDVIKEEQ 181

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 8e-07
 Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 68  ECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENEC 127
             +    RL + DTAGQEEF A+ + Y R  +  ++ FS  DR SFE  + ++ ++    
Sbjct: 47  VIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK 106

Query: 128 GE--IPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTKC 185
                P +L+ NK DL  Q  V  EE   L+R L    M  S K  +NV+  F  L    
Sbjct: 107 DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL---- 162

Query: 186 LSELRQQEE 194
           +  +R+ +E
Sbjct: 163 VRVIRKFQE 171

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 8e-07
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 50  FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTID 109
            +   S     ++   ++    + V+  +WD  GQ++   + + YY G Q  +      D
Sbjct: 32  LKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD 91

Query: 110 RDSFEAAHSWKMKVENECG--EIPTVLVQNKIDL---LDQSVVAPEEADLLSRALGCRLM 164
           RD  + A     ++ N+    +   ++  NK DL   +    +  +      R     + 
Sbjct: 92  RDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ 151

Query: 165 RTSVKEDINVNSIFRYLTTK 184
            +       +     +LT+ 
Sbjct: 152 PSCATSGDGLYEGLTWLTSN 171

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 15/135 (11%)

Query: 69  CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG 128
            + + + L LWDT+G   +D +    Y  + A +I F     ++ ++          E  
Sbjct: 45  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 104

Query: 129 EIPTV-LVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSVKEDIN- 173
               + LV  K DL              Q+ V+ ++   +++ +G    +  S  +  N 
Sbjct: 105 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

Query: 174 VNSIFRYLTTKCLSE 188
           V  IF   T  C+++
Sbjct: 165 VRDIFHVATLACVNK 179

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 15/126 (11%), Positives = 41/126 (32%), Gaps = 5/126 (3%)

Query: 64  RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKV 123
             ++E      R ++WD  GQE   +    YY   +  ++   + DR+          K+
Sbjct: 49  SNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 108

Query: 124 ENECG--EIPTVLVQNKIDLLDQ---SVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF 178
                  +   ++  NK D+ +    + ++        +     +          +    
Sbjct: 109 LAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 168

Query: 179 RYLTTK 184
            ++ ++
Sbjct: 169 EWMMSR 174

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 3/140 (2%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
              F  ++   ++ +  + I    G+E  L L DTAGQ+E+    + Y       ++ +S
Sbjct: 26  EGQFVDSYDPTIENTFTKLIT-VNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYS 84

Query: 107 TIDRDSFE--AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLM 164
                SFE       K+       +IP +LV NK DL  + V++ EE   L+ +     +
Sbjct: 85  VTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFL 144

Query: 165 RTSVKEDINVNSIFRYLTTK 184
            +S KE+     +FR +  +
Sbjct: 145 ESSAKENQTAVDVFRRIILE 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 4e-04
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 93  AYYRGAQACVITFSTIDRDSFEAAHSWK--MKVENECGEIPTVLVQNKIDLLDQSVVAPE 150
            + R  +  V+ +   DR SFE     K  +    +   +  +LV NK DL     V+ E
Sbjct: 68  GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 127

Query: 151 EADLLSRALGCRLMRTSVKE-DINVNSIFRYLTTK 184
           E + L+  L C     S    + N+  IF  L  +
Sbjct: 128 EGEKLATELACAFYECSACTGEGNITEIFYELCRE 162

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 5e-04
 Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 94  YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEAD 153
               A   V + +        +    +++   +  +IP +LV NK DL+    V+  E  
Sbjct: 76  QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR 135

Query: 154 LLSRALGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
             +    C+ + TS     NV  +F  +    + ++R + +
Sbjct: 136 ACAVVFDCKFIETSAAVQHNVKELFEGI----VRQVRLRRD 172

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 47  RDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS 106
             S++     + +   K      +G+   +++ + AG  +       +   A A +  FS
Sbjct: 27  TGSYQVLEKTESEQYKK--EMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFS 79

Query: 107 TIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLLDQSVVAPEEA---DLLSRAL 159
             D +SF+A      ++ +  G     +   LV  +  +   S     +A    L +   
Sbjct: 80  LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMK 139

Query: 160 GCRLMRTSVKEDINVNSIFRYLTTKCLSELRQQE 193
            C    T     +NV+ +F+ +  K ++  +QQ+
Sbjct: 140 RCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ 173

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 7e-04
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 12/135 (8%)

Query: 60  VSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSW 119
            +   T +E     ++   +D  G  +   + K Y+      V      D + F+ A   
Sbjct: 30  PTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVE 89

Query: 120 KMKVEN--ECGEIPTVLVQNKIDLLDQSVVAP----------EEADLLSRALGCRLMRTS 167
              + N  E  ++P V++ NKID  +    A             +  +       +   S
Sbjct: 90  LDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 149

Query: 168 VKEDINVNSIFRYLT 182
           V         F++L+
Sbjct: 150 VVMRNGYLEAFQWLS 164

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 101 CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG 160
            V + +        +    +++   +  ++P +LV NK DL+    V+ +E    +    
Sbjct: 77  IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD 136

Query: 161 CRLMRTSVKEDINVNSIFRYLTTKCLSELRQQEE 194
           C+ + TS     NV ++F  +    + ++R + +
Sbjct: 137 CKFIETSAALHHNVQALFEGV----VRQIRLRRD 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	208
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.94
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.84
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.8
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.79
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.77
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.72
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.7
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.67
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.67
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.6
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.58
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.57
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.55
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.48
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.43
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.31
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.29
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.24
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.23
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.23
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.09
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.03
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.03
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.99
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.73
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.67
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.63
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.43
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.26
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.16
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.96
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.96
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.09
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.03
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.61
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.6
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.38
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.52
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.16
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.31
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.95
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	92.37
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.8
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	91.79
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.73
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	90.55
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	90.4
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.29
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	89.87
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.79
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	87.56
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	87.17
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	86.5
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.51
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	85.45
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	84.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	84.72
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	84.33
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	83.97
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	83.06
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	82.26
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	81.41
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	81.34

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-38  Score=230.26  Aligned_cols=167  Identities=32%  Similarity=0.484  Sum_probs=156.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      +|+..+||+++|+.++||  ++.++..+.|.+.+.++.+.++..+.+.+++..+.+++|||+|++.|..+++.+++++++
T Consensus         1 ~~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~   80 (171)
T d2ew1a1           1 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA   80 (171)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccce
Confidence            478899999999999999  568888999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++.+|+.+.+|+..+.+... ..|+++||||+|+.++++++.++++.+++.++++|++|||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~  160 (171)
T d2ew1a1          81 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  160 (171)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHH
Confidence            9999999999999999999988877665 789999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      .++++++.+.
T Consensus       161 ~l~~~l~~~~  170 (171)
T d2ew1a1         161 DLACRLISEA  170 (171)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.6e-38  Score=229.97  Aligned_cols=160  Identities=53%  Similarity=0.760  Sum_probs=153.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      -+||+++|+.++||  +++++..+.|.+.+.||++.++.......++..+.+.+|||+|++++..+.+.+++++|++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999  4678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ||+++++||+++..|+.++.+..++.|+++||||+|+.++++++.+++++++++++++|+||||++|.||+++|+.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            99999999999999999999888899999999999998889999999999999999999999999999999999999998


Q ss_pred             HH
Q psy2518         185 CL  186 (208)
Q Consensus       185 ~~  186 (208)
                      ++
T Consensus       162 ~l  163 (164)
T d1z2aa1         162 HL  163 (164)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-37  Score=228.40  Aligned_cols=160  Identities=23%  Similarity=0.278  Sum_probs=149.1

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ++||+++|++++||  ++.++..+.|.+.+.||++ +.+.+.+..++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv   82 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV   82 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEEEe
Confidence            58999999999999  5788889999999999998 55677788999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFRYL  181 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~i  181 (208)
                      ||+++++||+++..|+..+.+...  +.|++++|||+|+.+.++++.+++++++++++++|+|||||++. ||+++|..+
T Consensus        83 ~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1          83 YSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             cccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHH
Confidence            999999999999999999887754  79999999999999989999999999999999999999999986 999999999


Q ss_pred             HHHHHH
Q psy2518         182 TTKCLS  187 (208)
Q Consensus       182 ~~~~~~  187 (208)
                      ++.+++
T Consensus       163 ~~~i~~  168 (169)
T d1x1ra1         163 VRVIRQ  168 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-38  Score=230.90  Aligned_cols=162  Identities=27%  Similarity=0.434  Sum_probs=145.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|+.++||  ++.++..+.|.+.+.||.+.++..+.+..++..+.+++||++|++++..+++.+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            579999999999999  578889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||+++++||+++..|+..+..... ..|++++|||+|+.++++++.+++++++++++++|+||||++|.||+++|..++
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            9999999999999999988776655 789999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         183 TKCLS  187 (208)
Q Consensus       183 ~~~~~  187 (208)
                      +.+++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-37  Score=229.03  Aligned_cols=165  Identities=29%  Similarity=0.480  Sum_probs=154.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      +|++.+||+++|+.++||  ++.++..+.|.+.+.++.+.+...+.+..++..+.+++|||+|++++..+++.+++++|+
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~   80 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMG   80 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            478899999999999999  467788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +|+|||+++++++..+..|+....+... +.|++++|||+|+.+.+.++.+++++++++++++|+||||++|.||+++|+
T Consensus        81 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  160 (169)
T d3raba_          81 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  160 (169)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            9999999999999999988887766655 789999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         180 YLTTKCLS  187 (208)
Q Consensus       180 ~i~~~~~~  187 (208)
                      .+++.+++
T Consensus       161 ~l~~~i~e  168 (169)
T d3raba_         161 RLVDVICE  168 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=228.62  Aligned_cols=165  Identities=25%  Similarity=0.279  Sum_probs=152.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      ....+||+++|+.++||  ++.++..+.|.+.+.||.+ +...+.+.+++..+.+.+||++|++++..++..+++++|++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45689999999999999  5788889999999999975 77788899999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      ++|||++++.||+.+..|+..+.+...  +.|+++||||+|+.+++.++.++++.+++.++++|+||||++|.||+++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            999999999999999999998876643  789999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      .+++.+.+.+
T Consensus       162 ~l~~~i~k~~  171 (173)
T d2fn4a1         162 QLVRAVRKYQ  171 (173)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999986544

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-37  Score=226.36  Aligned_cols=162  Identities=21%  Similarity=0.247  Sum_probs=132.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .|||+++|++++||  +++++.+..+.. +.+|.+ +.+.+.+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv   78 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   78 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhcee
Confidence            48999999999999  456666665543 455555 55677888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      ||++++.||+++..|+..+.+...  ..|+++||||+|+.++++++.++++++++.++++|+||||++|.||+++|+.++
T Consensus        79 ~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1          79 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999999999887654  689999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHhh
Q psy2518         183 TKCLSELR  190 (208)
Q Consensus       183 ~~~~~~~~  190 (208)
                      +.+..++.
T Consensus       159 ~~i~~~~~  166 (168)
T d2gjsa1         159 RQIRLRRD  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            98876543

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-36  Score=223.64  Aligned_cols=167  Identities=28%  Similarity=0.513  Sum_probs=130.3

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .|++++||+++|+.++||  ++.++..+.|.+.+.+|++.++..+.+.+++..+.+++|||+|++.+..+++.+++++|+
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~   81 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG   81 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCE
Confidence            488999999999999999  457899999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +|+|||++++.||+.+..|...+..... +.|+++||||+|+...+....+++..+++..+++|++|||++|.||+++|+
T Consensus        82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~  161 (173)
T d2fu5c1          82 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  161 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999988876655 899999999999988888989999999999999999999999999999999


Q ss_pred             HHHHHHHHHh
Q psy2518         180 YLTTKCLSEL  189 (208)
Q Consensus       180 ~i~~~~~~~~  189 (208)
                      ++++.+..+.
T Consensus       162 ~l~~~i~~k~  171 (173)
T d2fu5c1         162 TLARDIKAKM  171 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=225.53  Aligned_cols=162  Identities=28%  Similarity=0.441  Sum_probs=153.1

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      |++.+||+++|+.++||  +++++.++.|.+++.++.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~   80 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   80 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEE
Confidence            67899999999999999  4678889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||+++++||+.+..|+..+.+... ..|++++|||+|+.+.+.+..++++.+++.++++|+||||++|.||+++|+.
T Consensus        81 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~  160 (166)
T d1z0fa1          81 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  160 (166)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999988877666 8999999999999888899999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         181 LTTKC  185 (208)
Q Consensus       181 i~~~~  185 (208)
                      +++.+
T Consensus       161 i~~~i  165 (166)
T d1z0fa1         161 AAKKI  165 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2e-37  Score=227.45  Aligned_cols=160  Identities=28%  Similarity=0.341  Sum_probs=145.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      -++||+++|++++||  +++++..+.|.+.|.||++.+ +.+.+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccc-cccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            368999999999999  468888999999999999855 45778899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||+++++||+.+..|+.++.+...  +.|+++||||+|+.++++++.++++++++.++++|+||||++|.||+++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999987654  78999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T d1u8za_         162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=226.08  Aligned_cols=161  Identities=23%  Similarity=0.306  Sum_probs=149.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.+||+++|++++||  ++.++..+.|.+.+.||++.+ +.+.+.+++..+.+.+|||+|.+.+..+...+++++|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEE-EEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecc-cceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999  567888999999999999866 4678889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +|||+++++||+.+..|+..+.+...  +.|+++||||+|+.+++.++.+++++++++++++|+||||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999887654  7899999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         181 LTTKCL  186 (208)
Q Consensus       181 i~~~~~  186 (208)
                      +++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-37  Score=227.87  Aligned_cols=159  Identities=24%  Similarity=0.396  Sum_probs=142.7

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .|||+++|+.++||  ++.++..+.|.+.+.||+|.++..+.+..++..+.+.+|||+|++.+..+++.+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999  5788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      ||+++++||+++..|+..+.+..++.|+++||||+|+.+++..  +++..+++..+++|+||||++|.||+++|..|++.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  160 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  160 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999988889999999999999765543  34567888899999999999999999999999999


Q ss_pred             HHH
Q psy2518         185 CLS  187 (208)
Q Consensus       185 ~~~  187 (208)
                      ++.
T Consensus       161 l~~  163 (170)
T d1i2ma_         161 LIG  163 (170)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            874

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-36  Score=225.65  Aligned_cols=163  Identities=21%  Similarity=0.335  Sum_probs=146.9

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      +....+||+++|++++||  ++.++..+.|.+.+.||++ +...+.+..++..+.+++||++|++.+..++..+++++|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            346789999999999999  5688899999999999997 6678888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEE
Q psy2518         101 CVITFSTIDRDSFEAAH-SWKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRT  166 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~  166 (208)
                      +++|||+++++||+++. .|...+....++.|+++||||+|+.+            ++.++.+++++++++++ ++|+||
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999999874 56666666666899999999999854            47899999999999998 599999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ||++|.||+++|+.+++.++
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=221.53  Aligned_cols=161  Identities=27%  Similarity=0.319  Sum_probs=145.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..|||+++|++++||  +++++..+.|.+.+.||.+ +...+.+.+++..+.+++||++|++.+...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            358999999999999  4678889999999999998 7778888999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||+++++||+.+..|+..+.+...  ..|+++||||+|+.+++.++.++++++++.++++|+||||++|.||+++|..+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999988876654  79999999999998889999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q psy2518         182 TTKCLS  187 (208)
Q Consensus       182 ~~~~~~  187 (208)
                      ++.+.+
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-37  Score=225.16  Aligned_cols=158  Identities=24%  Similarity=0.304  Sum_probs=145.5

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .|||+++|++++||  ++.++..+.|.+.+.||++ +.+.....+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCccee-eccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            47999999999999  5688899999999999998 55566778899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      ||+++++||+++..|+..+.+...   +.|+++||||+|+.++++++.++++++++.++++|+||||++|.||+++|+.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999988766543   78999999999998889999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy2518         182 TTKC  185 (208)
Q Consensus       182 ~~~~  185 (208)
                      ++.+
T Consensus       161 ~~~~  164 (171)
T d2erxa1         161 LNLE  164 (171)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-36  Score=221.57  Aligned_cols=158  Identities=29%  Similarity=0.463  Sum_probs=149.7

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      |||+++|+.++||  +++++.++.|.+++.|+++.+........++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999  57888999999999999998888889999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      |++++.||+++..|+..+.+... +.|+++||||+|+.+.+.+..++++++++.++++|+||||++|.||+++|+.|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999998887765 89999999999998888999999999999999999999999999999999999987


Q ss_pred             H
Q psy2518         185 C  185 (208)
Q Consensus       185 ~  185 (208)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            5

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.3e-36  Score=220.61  Aligned_cols=161  Identities=24%  Similarity=0.387  Sum_probs=151.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.+||+++|+.+|||  +++++..+.|.+.+.||.+..+.......++....+.+||++|++.+..++..+++.+++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            4679999999999999  57889999999999999998888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      +|||++++++|+++..|+..+.+... +.|+++||||+|+.+++.+..++++++++.++++|+||||++|.||+++|..+
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999988877766 89999999999998889999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy2518         182 TTKC  185 (208)
Q Consensus       182 ~~~~  185 (208)
                      ++++
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-36  Score=221.94  Aligned_cols=160  Identities=23%  Similarity=0.244  Sum_probs=142.3

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  ++.+++.+.|.+.|.||++.++ .+.+..++..+.+++||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccc-cccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999  5789999999999999999765 4555679999999999999998774 467789999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCC-CHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDI-NVNSIFRYL  181 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~i  181 (208)
                      ||+++++||.++..|........  ++.|+++||||+|+.+++.++.+++++++++++++|+||||++|. ||+++|..+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999988776554433  379999999999998889999999999999999999999999998 699999999


Q ss_pred             HHHHHHH
Q psy2518         182 TTKCLSE  188 (208)
Q Consensus       182 ~~~~~~~  188 (208)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (168)
T d2atva1         160 CREVRRR  166 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988754

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-36  Score=223.39  Aligned_cols=169  Identities=27%  Similarity=0.453  Sum_probs=157.8

Q ss_pred             cccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          22 EEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        22 ~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      ++|+..+||+++|+.++||  ++.++.++.|.+.+.||.+..+..+.+.+++..+.+++|||+|++++..+++.++++||
T Consensus         1 ~~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~   80 (194)
T d2bcgy1           1 SEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSH   80 (194)
T ss_dssp             CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCS
T ss_pred             CCCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCC
Confidence            4689999999999999999  46888899999999999999988899999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++|+|||++++++|..+..|...+.+... ..|+++||||+|+.+.+.+..+++..+++..++.|+||||++|.||+++|
T Consensus        81 ~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f  160 (194)
T d2bcgy1          81 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF  160 (194)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHH
Confidence            99999999999999999988888876555 88999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q psy2518         179 RYLTTKCLSELR  190 (208)
Q Consensus       179 ~~i~~~~~~~~~  190 (208)
                      +.+++.+.+...
T Consensus       161 ~~l~~~i~~~~~  172 (194)
T d2bcgy1         161 LTMARQIKESMS  172 (194)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhh
Confidence            999999886543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-36  Score=221.44  Aligned_cols=169  Identities=25%  Similarity=0.391  Sum_probs=157.5

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      .|+..+||+++|+.++||  ++.++..+.|.+.+.||.+.......+..++..+.+++|||+|++++..+++.+++.+++
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~   80 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG   80 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCE
Confidence            378899999999999999  467888999999999999988888888899999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Q psy2518         101 CVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       101 ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +++|||++++++|.++..|+..+..... +.|+++||||+|+..++.+..+++.++++.++++|+||||++|.||+++|.
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~  160 (174)
T d2bmea1          81 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  160 (174)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHH
Confidence            9999999999999999999998887766 899999999999988889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy2518         180 YLTTKCLSELRQ  191 (208)
Q Consensus       180 ~i~~~~~~~~~~  191 (208)
                      .+++.++++.+.
T Consensus       161 ~l~~~i~~~~~~  172 (174)
T d2bmea1         161 QCARKILNKIES  172 (174)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhc
Confidence            999999876543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=224.69  Aligned_cols=169  Identities=24%  Similarity=0.364  Sum_probs=153.8

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECC----------eEEEEEEEeCCChhhhcch
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEG----------EEVRLMLWDTAGQEEFDAI   90 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~----------~~~~l~i~Dt~g~~~~~~~   90 (208)
                      +|+..+||+++|+.++||  ++.++..+.|.+.+.+|.+.++..+.+.+++          ..+.+.+|||+|++.|..+
T Consensus         1 ~~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~   80 (186)
T d2f7sa1           1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL   80 (186)
T ss_dssp             CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHH
Confidence            588999999999999999  4688889999999999999888888777654          3578999999999999999


Q ss_pred             hHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEec
Q psy2518          91 TKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSV  168 (208)
Q Consensus        91 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa  168 (208)
                      ++.+++++|++++|||++++.+|+.+..|+..+.++..  ..|+++||||+|+.+++.++.+++.+++++++++|+||||
T Consensus        81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sa  160 (186)
T d2f7sa1          81 TTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSA  160 (186)
T ss_dssp             HHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred             HHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeC
Confidence            99999999999999999999999999999988776544  6889999999999988999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         169 KEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                      ++|.||+++|+.+++.+.++.++
T Consensus       161 k~~~~i~e~f~~l~~~i~~k~~~  183 (186)
T d2f7sa1         161 ATGQNVEKAVETLLDLIMKRMEQ  183 (186)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998876544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-36  Score=221.23  Aligned_cols=160  Identities=22%  Similarity=0.335  Sum_probs=149.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|+.+|||  +++++..+.|.+.+.||++ +++.+...+++..+.+++||++|++.+...+..+++++|++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            579999999999999  5788999999999999998 7778888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.||.++..|+..+.+...  +.|+++||||+|+.+.+.+..++++.+++.++++|+||||++|.||+++|..+
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            9999999999999999988876554  78999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      ++++.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=219.21  Aligned_cols=168  Identities=25%  Similarity=0.434  Sum_probs=153.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      |++++||+++|+.++||  ++.++.++.|...+.++.+.+...+.+.+++..+.+.+||++|+++|...+..+++.+|++
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~   80 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   80 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeE
Confidence            67899999999999999  5688889999999999999899999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ++|||+++++||..+.+|+..+.+... +.|+++||||+|+.+.+....+.+..++..++.+|++|||++|.||+++|+.
T Consensus        81 i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~  160 (175)
T d2f9la1          81 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  160 (175)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHH
Confidence            999999999999999999999988776 7899999999999888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy2518         181 LTTKCLSELRQ  191 (208)
Q Consensus       181 i~~~~~~~~~~  191 (208)
                      +++.+.+...+
T Consensus       161 l~~~i~~~~~~  171 (175)
T d2f9la1         161 ILTEIYRIVSQ  171 (175)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhhh
Confidence            99998765543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=218.12  Aligned_cols=166  Identities=27%  Similarity=0.469  Sum_probs=150.5

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|+.++||  ++.++..+.|.+.+.++.+.+.........+..+.+.+||++|++.+..+++.+++.+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            579999999999999  578888999999999999989999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||+++++||+.+..|+..+.+... +.|+++||||+|+...+.+..+++..+++.++++|+||||++|.||+++|..++
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999999988877665 899999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q psy2518         183 TKCLSELRQ  191 (208)
Q Consensus       183 ~~~~~~~~~  191 (208)
                      +.+.++.++
T Consensus       162 ~~i~~~~~~  170 (173)
T d2a5ja1         162 KEIYRKIQQ  170 (173)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            998866544

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=219.68  Aligned_cols=161  Identities=25%  Similarity=0.336  Sum_probs=147.1

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      ++.+||+++|+.+|||  ++.++..+.|.++|.||++. .+.+.+.+++..+.+++||++|++.+..+++.+++++|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEE-EEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccc-ccceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            3578999999999999  57889999999999999984 45677788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~  179 (208)
                      +|||++++.||+++..|+..+.+...  +.|+++||||+|+.+++.+..+++..+++++ +++|+||||++|.||+++|+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            99999999999999999998877543  7899999999999988999999999999885 67999999999999999999


Q ss_pred             HHHHHHH
Q psy2518         180 YLTTKCL  186 (208)
Q Consensus       180 ~i~~~~~  186 (208)
                      .+++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-35  Score=219.15  Aligned_cols=159  Identities=30%  Similarity=0.436  Sum_probs=143.0

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ..||+++|++++||  ++.++..+.|.+.+.||++ +...+...+++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999  5688899999999999998 66778888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHH-HHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518         105 FSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE  170 (208)
Q Consensus       105 ~d~~~~~s~~~~~~-~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~  170 (208)
                      ||+++++||+++.. |...+.+..++.|+++||||+|+.+            .+.++.++++.++++++. +|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999865 4555555556899999999999853            357899999999999986 999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCL  186 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~  186 (208)
                      |.||+++|+.+++.++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999999876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=221.37  Aligned_cols=164  Identities=24%  Similarity=0.352  Sum_probs=145.9

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..+||+++|++++||  ++.++..+.|.+++.||++ +...+....++..+.+++||++|+++|..+++.+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            579999999999999  4688999999999999998 5667778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHH-HHHHHHhhcCCCCEEEEEeCCCCC------------CCCCCCHHHHHHHHHHhC-CeEEEEecC
Q psy2518         104 TFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLL------------DQSVVAPEEADLLSRALG-CRLMRTSVK  169 (208)
Q Consensus       104 v~d~~~~~s~~~~~~-~~~~~~~~~~~~piivvgnK~Dl~------------~~~~v~~~~~~~~~~~~~-~~~~e~Sa~  169 (208)
                      |||+++++||+++.. |...+....++.|+++||||+|+.            .++.++.+++++++.+++ ++|+||||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999965 555565555689999999999985            345799999999999975 699999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhh
Q psy2518         170 EDINVNSIFRYLTTKCLSELR  190 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~~~~~  190 (208)
                      +|.||+++|+.+++.+++..+
T Consensus       161 ~~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSCCS
T ss_pred             CCcCHHHHHHHHHHHHhcCcC
Confidence            999999999999998865443

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-35  Score=215.72  Aligned_cols=164  Identities=26%  Similarity=0.488  Sum_probs=143.2

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCc
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d   99 (208)
                      -|+..+||+++|+.++||  ++.++..+.|.+. +.++++.++....+..++..+.++||||+|++.+..++..+++++|
T Consensus         2 ~~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d   81 (170)
T d2g6ba1           2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   81 (170)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             CCceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCc
Confidence            488999999999999999  4677888888654 5677888988889999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ++++|||+++++||..+..|+..+.+..+ ..|+++|+||+|+.+++.++.+++..+++.++++|+||||++|.||+++|
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f  161 (170)
T d2g6ba1          82 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  161 (170)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             eeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999998888777665 78999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy2518         179 RYLTTKCL  186 (208)
Q Consensus       179 ~~i~~~~~  186 (208)
                      +.+++.+.
T Consensus       162 ~~l~~~i~  169 (170)
T d2g6ba1         162 TAIAKELK  169 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcC
Confidence            99998864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=216.17  Aligned_cols=161  Identities=26%  Similarity=0.403  Sum_probs=150.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      -.|||+++|+.++||  ++.++.++.|.+.+.||.+.++.......++..+.+.+||++|++.+..+++.++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            468999999999999  468888999999999999999888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLT  182 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~  182 (208)
                      |||++++++|+++..|...+.+... +.|+++||||+|+.+++.++.++++++++.++++|+||||++|.||+++|+.|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999988876655 899999999999998899999999999999999999999999999999999998


Q ss_pred             HHHH
Q psy2518         183 TKCL  186 (208)
Q Consensus       183 ~~~~  186 (208)
                      +.+.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            8653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-35  Score=215.78  Aligned_cols=159  Identities=28%  Similarity=0.419  Sum_probs=147.8

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  ++.++.++.|.+.+.||+|.++..+.+..++..+.+++||++|++.+..+++.+++++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            68999999999999  5788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCC---CCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLD---QSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      ||++++.||+++..|+........ ..|+++++||+|+.+   .+.++.++++++++.++++|+||||++|.||+++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            999999999999999887766655 789999999999843   4789999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         181 LTTKC  185 (208)
Q Consensus       181 i~~~~  185 (208)
                      |++++
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            88764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-34  Score=212.34  Aligned_cols=161  Identities=20%  Similarity=0.283  Sum_probs=139.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccc-cccccccccceeeEEEEECCeEEEEEEEeCC---ChhhhcchhHhhhcCCc
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFE-AAHSWKMKVSIKRTIKECEGEEVRLMLWDTA---GQEEFDAITKAYYRGAQ   99 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~---g~~~~~~~~~~~~~~~d   99 (208)
                      .-|||+++|+.++||  +++++....+. ..+.+|.+.+++.+.+.+++..+.+.+||++   |++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            468999999999999  45666666655 3456778889999999999999999999965   56666  4677899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         100 ACVITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       100 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++|+|||+++++||+++..|...+.+...  +.|+++||||+|+.++++++.++++++++.++++|+||||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            99999999999999999999988876543  7999999999999888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         178 FRYLTTKCLSE  188 (208)
Q Consensus       178 f~~i~~~~~~~  188 (208)
                      |..+++.+..+
T Consensus       160 f~~l~~~i~~r  170 (172)
T d2g3ya1         160 FEGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99999998654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-34  Score=214.02  Aligned_cols=161  Identities=23%  Similarity=0.375  Sum_probs=144.7

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.+||+++|+++|||  +++++..+.|.+.+.||++ +...+.+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            5689999999999999  5688999999999999998 677788889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHH-HHHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhC-CeEEEEec
Q psy2518         103 ITFSTIDRDSFEAAHS-WKMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALG-CRLMRTSV  168 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~e~Sa  168 (208)
                      +|||+++++||+++.. |...+.+...+.|+++||||+|+.+            .+.+...++..++++++ ++|+||||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999965 6666666666899999999999843            24577889999999988 59999999


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       169 ~~~~~i~~~f~~i~~~~~  186 (208)
                      ++|.||+++|+.+++.++
T Consensus       162 k~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHc
Confidence            999999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-34  Score=210.21  Aligned_cols=159  Identities=27%  Similarity=0.342  Sum_probs=145.5

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      ..|||+++|++++||  +++++.++.|.+.+.||++.++ ...+..++..+.+.+||++|++.+...+..+++.++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            358999999999999  5688999999999999999654 4556788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYL  181 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i  181 (208)
                      |||++++.+|+.+..|+..+.+...  +.|+++||||+|+.+ +.+..++++++++.++++|+||||++|.||+++|..+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999887764  689999999999864 6788999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         182 TTKCL  186 (208)
Q Consensus       182 ~~~~~  186 (208)
                      ++.+.
T Consensus       160 ~~~i~  164 (166)
T d1ctqa_         160 VREIR  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-34  Score=214.97  Aligned_cols=160  Identities=21%  Similarity=0.339  Sum_probs=143.2

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ..||+++|++++||  ++.++..+.|.++|.||++ +...+.+.+++..+.+++||++|++.+...++.+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            47999999999999  5688999999999999997 66777888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHH-HHHHHhhcCCCCEEEEEeCCCCCC------------CCCCCHHHHHHHHHHhCC-eEEEEecCC
Q psy2518         105 FSTIDRDSFEAAHSW-KMKVENECGEIPTVLVQNKIDLLD------------QSVVAPEEADLLSRALGC-RLMRTSVKE  170 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~-~~~~~~~~~~~piivvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~e~Sa~~  170 (208)
                      ||+++++||+.+..| ...+....++.|+++||||+|+..            ++.++.+++..++++++. .|+||||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999998655 455556666999999999999853            467999999999999885 899999999


Q ss_pred             CCC-HHHHHHHHHHHHHH
Q psy2518         171 DIN-VNSIFRYLTTKCLS  187 (208)
Q Consensus       171 ~~~-i~~~f~~i~~~~~~  187 (208)
                      |.| |+++|+.+++.+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999998874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-33  Score=208.45  Aligned_cols=164  Identities=29%  Similarity=0.485  Sum_probs=146.3

Q ss_pred             cCccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518          19 AGQEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR   96 (208)
Q Consensus        19 ~g~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   96 (208)
                      ||+   +..|||+++|++++||  +++++..+.|.+.+.+|++..+..+....++..+.+.+||++|+..+...+..+++
T Consensus         1 ~~~---~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~   77 (174)
T d1wmsa_           1 AGK---SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR   77 (174)
T ss_dssp             CCC---EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT
T ss_pred             CCC---CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhh
Confidence            466   6789999999999999  46788899999999999998888899999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-CeEEEEecCC
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-CRLMRTSVKE  170 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa~~  170 (208)
                      .+++++++||.+++.||+.+..|+.++.+...     +.|+++||||+|+.+ +.++.+++++++++.+ ++|+||||++
T Consensus        78 ~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~  156 (174)
T d1wmsa_          78 GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKD  156 (174)
T ss_dssp             TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred             ccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCC
Confidence            99999999999999999999999988876542     689999999999965 7899999999999875 6999999999


Q ss_pred             CCCHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCL  186 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~  186 (208)
                      |.||+++|+.+++.++
T Consensus       157 ~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         157 ATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999999886

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.7e-34  Score=207.99  Aligned_cols=157  Identities=27%  Similarity=0.413  Sum_probs=143.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcc-hhHhhhcCCcEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDA-ITKAYYRGAQACV  102 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-~~~~~~~~~d~ii  102 (208)
                      +++||+++|+.++||  ++.++..+.|.+.+.+|.+..+..+...+.+....+.+||++|.+.+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            479999999999999  5688889999999999999998889999999999999999999877654 5678899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCC---CCCHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKE---DINVNSI  177 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~---~~~i~~~  177 (208)
                      +|||+++++||+++..|+..+.+...  +.|+++||||+|+.+++.++.+++++++++++++|+||||++   +.||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            99999999999999999999887654  799999999999988889999999999999999999999997   4599999


Q ss_pred             HHHHH
Q psy2518         178 FRYLT  182 (208)
Q Consensus       178 f~~i~  182 (208)
                      |+.|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.8e-34  Score=207.61  Aligned_cols=161  Identities=30%  Similarity=0.502  Sum_probs=142.7

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ++||+++|+.++||  ++.+++.+.|.+.+.||++.++..+.+.+++..+.+.+|||+|++.+..+++.+++++|++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            78999999999999  4688889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRYLTT  183 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~  183 (208)
                      ||+++++||+++..|......... ..|++++++|.|+.+ +.+..++++++++.++++|++|||++|.||+++|+.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999998888877766 788899999999854 678899999999999999999999999999999999999


Q ss_pred             HHHHH
Q psy2518         184 KCLSE  188 (208)
Q Consensus       184 ~~~~~  188 (208)
                      .+.++
T Consensus       161 ~i~~k  165 (166)
T d1g16a_         161 LIQEK  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            88653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-33  Score=207.56  Aligned_cols=163  Identities=27%  Similarity=0.463  Sum_probs=132.4

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEEC-CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECE-GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      .+||+++|+.++||  +++++..+.|.+.+.||.+........... ...+.+.+|||+|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            68999999999999  468888999999999999887777766654 556789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCC-CCCCHHHHHHHHHHhC-CeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQ-SVVAPEEADLLSRALG-CRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~-~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~  176 (208)
                      |||++++.||+.+..|+.++.....     +.|+++||||+|+.++ +.++.+++++++++++ ++|+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999998876542     6899999999999764 5588899999999986 6999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2518         177 IFRYLTTKCLSEL  189 (208)
Q Consensus       177 ~f~~i~~~~~~~~  189 (208)
                      +|+++++.++++.
T Consensus       162 ~f~~l~~~~l~~~  174 (175)
T d1ky3a_         162 AFEEIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-33  Score=205.26  Aligned_cols=164  Identities=27%  Similarity=0.434  Sum_probs=151.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      --.+||+++|+.++||  ++.++.++.|.+.+.++.+..+..+.+.+++..+.+.+|||+|++++..+++.+++++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4569999999999999  56788899999999999998888899999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSIFRY  180 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~  180 (208)
                      +|||++++.+++.+..|+.++.+...  ..|+++++||.|..+ +.+..+++++++++++++|++|||++|.||+++|+.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~-~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc-ccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887655  689999999999754 789999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy2518         181 LTTKCLSEL  189 (208)
Q Consensus       181 i~~~~~~~~  189 (208)
                      +++.+++.+
T Consensus       164 l~~~l~~~p  172 (177)
T d1x3sa1         164 LVEKIIQTP  172 (177)
T ss_dssp             HHHHHHTSG
T ss_pred             HHHHHccCc
Confidence            999988654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1e-32  Score=204.85  Aligned_cols=165  Identities=25%  Similarity=0.414  Sum_probs=148.5

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      ++||+++|+.+|||  ++.++.++.|.+.+.||++.++..+.+...+..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            68999999999999  4678889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC-----CCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-hCCeEEEEecCCCCCHHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG-----EIPTVLVQNKIDLLDQSVVAPEEADLLSRA-LGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      ||.+++.+|+.+..|+..+.....     +.|+++||||+|+.+ +.+..++...++.. .+++|+||||++|.||+++|
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  160 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  160 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHH
Confidence            999999999999999988876542     689999999999966 56777777777765 46799999999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy2518         179 RYLTTKCLSELRQQ  192 (208)
Q Consensus       179 ~~i~~~~~~~~~~~  192 (208)
                      +.+++.++++..+.
T Consensus       161 ~~l~~~i~~~~~~~  174 (184)
T d1vg8a_         161 QTIARNALKQETEV  174 (184)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccc
Confidence            99999988766544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-32  Score=198.73  Aligned_cols=159  Identities=18%  Similarity=0.219  Sum_probs=135.9

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      .+||+++|+.++||  ++.++..+.|.+ +.+|.+ +.+.+.+.++++.+.+.||||+|++.+     .+++++|++|+|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV   77 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV   77 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccc-eeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence            69999999999999  567888999865 456665 455788889999999999999998764     478999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC----CCCEEEEEeCCCCC--CCCCCCHHHHHHHHHHh-CCeEEEEecCCCCCHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG----EIPTVLVQNKIDLL--DQSVVAPEEADLLSRAL-GCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~----~~piivvgnK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~  177 (208)
                      ||+++++||+++..|+..+.....    +.|+++||||.|+.  +.+.++.++++.++.+. +++|+||||++|.||+++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            999999999999999988865543    67899999988874  45788999999997664 679999999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy2518         178 FRYLTTKCLSELRQQ  192 (208)
Q Consensus       178 f~~i~~~~~~~~~~~  192 (208)
                      |..+++.++...+++
T Consensus       158 F~~l~~~i~~~~~~~  172 (175)
T d2bmja1         158 FQEVAQKVVTLRKQQ  172 (175)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhc
Confidence            999999998877654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.95  E-value=9e-30  Score=185.49  Aligned_cols=152  Identities=20%  Similarity=0.251  Sum_probs=124.8

Q ss_pred             eeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEE
Q psy2518          27 ITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVIT  104 (208)
Q Consensus        27 ~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v  104 (208)
                      -+||+++|+.++||  ++.++..+.|.+.+.||+|.++.  .+..  ..+.+++||++|++.+...+..+++.++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeee--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            58999999999999  56888899999999999985543  3333  457799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHH-H----HHHhCCeEEEEecCCCCCHHHH
Q psy2518         105 FSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADL-L----SRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       105 ~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ||++++++|.....|+..+.+...  +.|+++||||.|+.+.  ....+..+ +    ++..+++++++||++|.||+++
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~  155 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  155 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchh--hhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHH
Confidence            999999999999888887765543  8999999999998543  23333222 2    2233568999999999999999


Q ss_pred             HHHHHHH
Q psy2518         178 FRYLTTK  184 (208)
Q Consensus       178 f~~i~~~  184 (208)
                      |++|++.
T Consensus       156 ~~~l~~~  162 (164)
T d1zd9a1         156 LQWLIQH  162 (164)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9998875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=1.9e-28  Score=181.26  Aligned_cols=157  Identities=13%  Similarity=0.181  Sum_probs=120.0

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.+||+++|++++||  ++.++..+.+. .+.||.+....    ..+...+.+.+||++|++.++..+..+++++++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVE----TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEE----EEEETTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEE----EEeeCCEEEEEEecccccccchhHHhhhccceeEE
Confidence            5689999999999999  45666667664 45677765433    22334577999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLL-----SRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||++++.++.....|+....+...  +.|++++|||+|+.+  ..+.++..+.     +...++++++|||++|.||+
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG--ALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT--CCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccc--ccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            99999999999999888877655443  799999999999954  3344443332     23335689999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2518         176 SIFRYLTTKCLSE  188 (208)
Q Consensus       176 ~~f~~i~~~~~~~  188 (208)
                      ++|+++++.+.++
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T d1moza_         168 EGLDWLIDVIKEE  180 (182)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999887653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.95  E-value=3e-28  Score=177.30  Aligned_cols=155  Identities=14%  Similarity=0.164  Sum_probs=119.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|+.++||  +++++..+.+ ..+.||+|...  ..  ++...+.+.+||++|++.++..++.+++.++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~--~~--~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNI--KT--LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEE--EE--EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeee--ee--ccccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            358999999999999  4566655544 56788887432  33  33445779999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      |||.++..++.....|+.......  .+.|+++|+||+|+.+...  .++.....     +..++++++|||++|.||++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            999999999998877766655433  3799999999999965433  33333221     12245799999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         177 IFRYLTTKCLS  187 (208)
Q Consensus       177 ~f~~i~~~~~~  187 (208)
                      +|++|++++.+
T Consensus       154 ~~~~l~~~i~~  164 (165)
T d1ksha_         154 GIDWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999988753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.94  E-value=5.5e-28  Score=177.64  Aligned_cols=154  Identities=15%  Similarity=0.206  Sum_probs=121.5

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEE
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQAC  101 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~i  101 (208)
                      .++.+||+++|+.++||  +++++..+.|.. +.++.|.+  .+.+...  .+.+.+||++|++.++..++.+++.+|++
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~--~~~i~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   87 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeee--EEEeccC--CeeEeEeeccccccchhHHHHHhhcccee
Confidence            35679999999999999  467788888864 44566533  3444444  46799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHH-----HHHhCCeEEEEecCCCCCH
Q psy2518         102 VITFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLL-----SRALGCRLMRTSVKEDINV  174 (208)
Q Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~e~Sa~~~~~i  174 (208)
                      ++|||++++.++.++..|+..+.....  +.|++++|||+|+.+.  ...++..+.     ++..++++++|||++|.||
T Consensus        88 i~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccc--ccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            999999999999999888877765444  7899999999999653  223322221     2223458999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         175 NSIFRYLTTK  184 (208)
Q Consensus       175 ~~~f~~i~~~  184 (208)
                      +++|+++++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.94  E-value=6.4e-28  Score=177.04  Aligned_cols=154  Identities=17%  Similarity=0.259  Sum_probs=119.4

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+.+||+++|+.++||  +++++..+.+.. ..+|.+..+    .......+.+.+||++|++.++..+..+++.+++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            3468999999999999  467777777654 446665332    223344578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHH-----HHHHhCCeEEEEecCCCCCHH
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADL-----LSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +|||+++++++.++..|+....+..  .+.|+++++||+|+.+.  ....+...     .+...++.+++|||++|+||+
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeeccccccc--ccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            9999999999999988887765543  27999999999999542  23333222     222335679999999999999


Q ss_pred             HHHHHHHHHH
Q psy2518         176 SIFRYLTTKC  185 (208)
Q Consensus       176 ~~f~~i~~~~  185 (208)
                      |+|++|.+.+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.92  E-value=1.4e-26  Score=166.77  Aligned_cols=151  Identities=15%  Similarity=0.211  Sum_probs=121.2

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEE
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITF  105 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~  105 (208)
                      +||+++|++++||  +++++..+.|...+..+.     ......+...+.+.+||++|.+.+...+..+++.+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG-----FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSS-----CCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcccccee-----eEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999  467787888876655443     233455677888999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHH-----HHHHHhCCeEEEEecCCCCCHHHHH
Q psy2518         106 STIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEAD-----LLSRALGCRLMRTSVKEDINVNSIF  178 (208)
Q Consensus       106 d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~e~Sa~~~~~i~~~f  178 (208)
                      |.+++.++..+..|+.++.....  ..|+++++||.|+.+.  ....+..     .+++..++++++|||++|.||+++|
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~  153 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeeccccccc--ccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHH
Confidence            99999999999888877765544  7899999999998542  2222222     2344456789999999999999999


Q ss_pred             HHHHHHH
Q psy2518         179 RYLTTKC  185 (208)
Q Consensus       179 ~~i~~~~  185 (208)
                      ++|.+++
T Consensus       154 ~~l~~~l  160 (160)
T d1r8sa_         154 DWLSNQL  160 (160)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9998763

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=9.9e-25  Score=162.61  Aligned_cols=157  Identities=12%  Similarity=0.012  Sum_probs=120.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|+++|||  ++.|+..+.|  .+.||+|+++.    .+....+.+++||++|++.++..+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            358999999999999  4678878887  47899997643    345566789999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHHHHHHHHHHHhhcC-CCCEEEEEeCCCCCCCC----------------CCCHHHHHHH
Q psy2518         104 TFSTIDRD-----------SFEAAHSWKMKVENECG-EIPTVLVQNKIDLLDQS----------------VVAPEEADLL  155 (208)
Q Consensus       104 v~d~~~~~-----------s~~~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~~----------------~v~~~~~~~~  155 (208)
                      +||.++..           .++....|...+..... +.|+++++||+|+.+.+                ..+...+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998864           35566777777766554 89999999999973211                1223333333


Q ss_pred             HHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         156 SRA----------LGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       156 ~~~----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ...          ..+.+++|||++|.||+++|+.+.+.+++.
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHHH
Confidence            221          123578999999999999999998887753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.1e-23  Score=156.33  Aligned_cols=154  Identities=16%  Similarity=0.138  Sum_probs=109.8

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|++|+||  ++.|+..+     ..||+|.    .+..++...+.+++|||+|++.++.++..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~-----~~~t~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKII-----HEAGTGI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH-----HSCCCSE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC-----CCCCccE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            358999999999999  34554444     4455542    334455566789999999999999999999999999999


Q ss_pred             EEeCCChhhHH-----------HHHHHHHHHHhhcC-CCCEEEEEeCCCCCCC---------------CCCCHHHHHH-H
Q psy2518         104 TFSTIDRDSFE-----------AAHSWKMKVENECG-EIPTVLVQNKIDLLDQ---------------SVVAPEEADL-L  155 (208)
Q Consensus       104 v~d~~~~~s~~-----------~~~~~~~~~~~~~~-~~piivvgnK~Dl~~~---------------~~v~~~~~~~-~  155 (208)
                      |||+++.++|.           ....|...+..... ..|+++++||+|+...               .....+++.. .
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999988762           33445554544433 7899999999986211               1112222221 1


Q ss_pred             HHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         156 SRA----------LGCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       156 ~~~----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ..+          .++.+++|||++|.||+++|+.+.+.++++
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            111          124578999999999999999998877653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=7.4e-23  Score=152.59  Aligned_cols=156  Identities=14%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|++++||  ++.|+   .|.+.+.||+|+..  .  .++.+.+.+++||++|++.++..+..++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~--~--~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHE--Y--DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEE--E--EEEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEE--E--EEeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            479999999999999  35555   58889999999543  2  344456679999999999999999999999999999


Q ss_pred             EEeCCChhh----------HHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCC----------------CCCCHHHHHHH
Q psy2518         104 TFSTIDRDS----------FEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQ----------------SVVAPEEADLL  155 (208)
Q Consensus       104 v~d~~~~~s----------~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~----------------~~v~~~~~~~~  155 (208)
                      +||.++..+          ++....|+..+.+..  .+.|++++|||+|+.++                ..-..+.+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999998643          344455555554433  28999999999997321                11222334433


Q ss_pred             HHHh-----------CCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         156 SRAL-----------GCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       156 ~~~~-----------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ....           .+.++++||+++.||+++|+.+.+.+++.
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~~  197 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHHH
Confidence            3321           24567899999999999999988877653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.85  E-value=1.3e-22  Score=148.34  Aligned_cols=153  Identities=12%  Similarity=0.172  Sum_probs=113.0

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|..++||  +++++..+.+.+. .++.+.  .......  ..+.+.+||+++.+.....+..++..++++++
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~   88 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGS--NVEEIVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   88 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCS--SCEEEEE--TTEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccce--eEEEEee--cceEEEEeccccccccccchhhhhccceeeee
Confidence            458999999999999  4677778887653 344442  2333333  34678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHH-----HHhCCeEEEEecCCCCCHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLS-----RALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      ++|.++..++.....+.........  ..|+++|+||+|+...  ...++.....     ...++++++|||++|+||++
T Consensus        89 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          89 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             ecccccccchhhhhhhhhhhhhcccccceEEEEEEEccccccc--CcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999999888666655544433  8999999999998543  2233333222     22345899999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      +|++|.+++
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.85  E-value=3.3e-22  Score=144.57  Aligned_cols=155  Identities=14%  Similarity=0.208  Sum_probs=117.7

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEE
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVI  103 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~  103 (208)
                      +.+||+++|.+++||  +++++..+.|... .+|.+.    .........+.+.+||.++.+.+.......+..++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGF----NVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSE----EEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccce----eeeeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            468999999999999  4678888888653 355542    222333345678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHH----HHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         104 TFSTIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEAD----LLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~----~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++|..+..++.....+.....+...  ..|+++++||.|+.+... ..+...    .++...+++|++|||++|.||+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~  157 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT-SSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  157 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC-HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeecccccccc-HHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHH
Confidence            9999999998888665555443322  789999999999965322 222222    234445678999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         178 FRYLTTKCL  186 (208)
Q Consensus       178 f~~i~~~~~  186 (208)
                      |+.|++.+.
T Consensus       158 ~~~l~~~l~  166 (169)
T d1upta_         158 MEWLVETLK  166 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.1e-21  Score=138.58  Aligned_cols=148  Identities=17%  Similarity=0.205  Sum_probs=115.6

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEe
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS  106 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d  106 (208)
                      ||+++|++++||  +++++..+.|. .+.||.+..    ........+...+||+.+...+....+.+++.++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT----SEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCE----EEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEe----EEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            899999999999  46777777765 467777632    23344445668999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhhcC--CCCEEEEEeCCCCCCCCCCCHHHHHHHHH------------HhCCeEEEEecCCCC
Q psy2518         107 TIDRDSFEAAHSWKMKVENECG--EIPTVLVQNKIDLLDQSVVAPEEADLLSR------------ALGCRLMRTSVKEDI  172 (208)
Q Consensus       107 ~~~~~s~~~~~~~~~~~~~~~~--~~piivvgnK~Dl~~~~~v~~~~~~~~~~------------~~~~~~~e~Sa~~~~  172 (208)
                      .++..++.....|.....+...  +.|+++++||.|+..  .+...+......            ..++++++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSS--CCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccc--cCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            9999999988777777665554  899999999999854  334443332221            123479999999999


Q ss_pred             CHHHHHHHHHH
Q psy2518         173 NVNSIFRYLTT  183 (208)
Q Consensus       173 ~i~~~f~~i~~  183 (208)
                      ||+|+|++|.+
T Consensus       155 Gv~e~~~~l~~  165 (166)
T d2qtvb1         155 GYLEAFQWLSQ  165 (166)
T ss_dssp             SHHHHHHHHTT
T ss_pred             CHHHHHHHHhC
Confidence            99999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.80  E-value=1.3e-20  Score=138.15  Aligned_cols=151  Identities=15%  Similarity=0.046  Sum_probs=101.6

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc--ccccccccceeeEEEEECCeEEEEEEEeCCChhhh--------cchhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA--AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF--------DAITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~--------~~~~~~~~   95 (208)
                      -+|+++|.+++||  +++++++.....  ....|. .+.........+  ..+.+|||+|....        ......++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt-~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTT-RKRLRGILTEGR--RQIVFVDTPGLHKPMDALGEFMDQEVYEAL   82 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCC-CSCEEEEEEETT--EEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcc-cccccceeeeee--eeeeecccccccccccccchhccccccccc
Confidence            3699999999999  356665554321  122222 233333344444  45899999997332        23334557


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV  174 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i  174 (208)
                      +.||++++|+|.+++.+... ..|...+.+...+.|+++|+||+|+.+.   .++..+.+....+. .++++||++|.|+
T Consensus        83 ~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          83 ADVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKY---PEEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SSCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSS---HHHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             ccccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccC---HHHHHHHHHhhcccCceEEEecCCCCCH
Confidence            89999999999988755432 3444555555558899999999998542   23344455555554 8899999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKC  185 (208)
Q Consensus       175 ~~~f~~i~~~~  185 (208)
                      +++++.+++.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=1.7e-19  Score=132.00  Aligned_cols=154  Identities=13%  Similarity=0.156  Sum_probs=109.8

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEE
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACV  102 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii  102 (208)
                      .+..||+++|++++||  +++++..+.+... .||.+..  ...+.+++.  .+..||+.++..+...+..+++.+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPT--SEELTIAGM--TFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETTE--EEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccc--eeEEEeccc--ccccccccchhhhhhHHhhhhcccceee
Confidence            6678999999999999  4677777777654 4555433  334455554  4789999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhhc--CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH-----------------hCCeE
Q psy2518         103 ITFSTIDRDSFEAAHSWKMKVENEC--GEIPTVLVQNKIDLLDQSVVAPEEADLLSRA-----------------LGCRL  163 (208)
Q Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~  163 (208)
                      +++|.++...+.....++.......  .+.|+++++||.|+..  .+...+..+....                 .++++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999999988765554444332  3899999999999844  3445544443321                 12468


Q ss_pred             EEEecCCCCCHHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ++|||++|+||+|+|+++++.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.4e-20  Score=135.47  Aligned_cols=149  Identities=17%  Similarity=0.201  Sum_probs=105.8

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhhhc--------chhHhhhc
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD--------AITKAYYR   96 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~   96 (208)
                      +||+++|+.++||  +++++.+..... .+.|+...+.....+...+.  .+.+||++|.....        .....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCc--eeeeccccccccccccchhHHHHHHHHHHH
Confidence            7999999999999  456665554432 23333333444444555554  57899999953221        22345678


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNS  176 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~  176 (208)
                      .+|++++++|.+++.+++....|...+.....+.|+++|+||+|+.++...       +.+..+.+++++||++|.||++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~~  152 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVDV  152 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHHH
Confidence            999999999999998887777776666665558999999999998553221       1122356899999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         177 IFRYLTTKC  185 (208)
Q Consensus       177 ~f~~i~~~~  185 (208)
                      ++++|++.+
T Consensus       153 L~~~l~~~l  161 (161)
T d2gj8a1         153 LRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhhC
Confidence            999998763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.76  E-value=2.4e-20  Score=141.45  Aligned_cols=158  Identities=16%  Similarity=0.128  Sum_probs=110.6

Q ss_pred             ccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcE
Q psy2518          23 EFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQA  100 (208)
Q Consensus        23 ~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~  100 (208)
                      -|++.+||+++|++|+||  ++.++..+    .+.||+|+.  ...+.+++  +.+++||++|++.++..|..++.++++
T Consensus         2 ~~k~~~KilllG~~~vGKTsll~~~~~~----~~~pTiG~~--~~~~~~~~--~~~~~~D~~Gq~~~r~~w~~~~~~~~~   73 (221)
T d1azta2           2 VYRATHRLLLLGAGESGKSTIVKQMRIL----HVVLTSGIF--ETKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTA   73 (221)
T ss_dssp             HHHHSEEEEEECSTTSSHHHHHHHHHHH----HCCCCCSCE--EEEEEETT--EEEEEEECCCSTTTTTGGGGGCTTCSE
T ss_pred             cchhcCEEEEECCCCCCHHHHHHHHhcC----CcCCCCCeE--EEEEEECc--EEEEEEecCccceeccchhhhcccccc
Confidence            478899999999999999  34544333    456899954  34445544  678999999999999999999999999


Q ss_pred             EEEEEeCCChhh----------HHHHHHHHHHHHhhc-C-CCCEEEEEeCCCCCCCCC----CC----------------
Q psy2518         101 CVITFSTIDRDS----------FEAAHSWKMKVENEC-G-EIPTVLVQNKIDLLDQSV----VA----------------  148 (208)
Q Consensus       101 ii~v~d~~~~~s----------~~~~~~~~~~~~~~~-~-~~piivvgnK~Dl~~~~~----v~----------------  148 (208)
                      +++|+|.++.+.          ..+...++..+.+.. . +.|++|++||+|+.+++.    ..                
T Consensus        74 ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~  153 (221)
T d1azta2          74 IIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPED  153 (221)
T ss_dssp             EEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTT
T ss_pred             eEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccc
Confidence            999999986532          233333333333332 2 799999999999843210    10                


Q ss_pred             ----------HHHHHHHHH-----Hh--------CCeEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy2518         149 ----------PEEADLLSR-----AL--------GCRLMRTSVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       149 ----------~~~~~~~~~-----~~--------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                                ..++..+.+     ..        .+-.+++||+++.||..+|+.+.+.+++.
T Consensus       154 ~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         154 ATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             ccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence                      122222221     11        12356899999999999999988777654

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=3e-18  Score=125.52  Aligned_cols=155  Identities=14%  Similarity=0.043  Sum_probs=98.5

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh----cc---hhHhhhcCCc
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF----DA---ITKAYYRGAQ   99 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~----~~---~~~~~~~~~d   99 (208)
                      .|.++|.+++||  +++++.+........+..+.+.... .........+.+|||+|....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999  4566555444332222222222222 223333445789999994321    11   1224578899


Q ss_pred             EEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518         100 ACVITFSTIDR--DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus       100 ~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      ++++++|....  .++.....|+........+.|+++|+||+|+.+++.  .++..+.....+.+++++||++|.||+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L  159 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPAL  159 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHH
Confidence            99999998653  233444445444333223689999999999855322  23334444556789999999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         178 FRYLTTKCL  186 (208)
Q Consensus       178 f~~i~~~~~  186 (208)
                      ++.+.+.+.
T Consensus       160 ~~~i~~~l~  168 (180)
T d1udxa2         160 KEALHALVR  168 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999887764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=3.5e-18  Score=124.13  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=93.7

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChh---------hhcchhHhhhcC
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQE---------EFDAITKAYYRG   97 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~---------~~~~~~~~~~~~   97 (208)
                      .|+++|..++||  +++++.+.... ....+.+.........++.....+.+||++|..         .+......++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKA-IVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcc-eecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            589999999999  34555444332 112222222222233344445568999999842         122233445789


Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Q psy2518          98 AQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVNSI  177 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~  177 (208)
                      +|+++++.|.++...... ..|+..+...  +.|+++|+||+|+.++  ...+...++.+....+++++||++|.|++++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L  155 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLRE--FEREVKPELYSLGFGEPIPVSAEHNINLDTM  155 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHHH--HHHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhhh--hhhHHHHHHHhcCCCCeEEEecCCCCCHHHH
Confidence            999999999887655433 3444444443  6899999999998431  1122222222222337899999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         178 FRYLTTKCLSE  188 (208)
Q Consensus       178 f~~i~~~~~~~  188 (208)
                      +++|.+.+.++
T Consensus       156 ~~~i~~~l~e~  166 (171)
T d1mkya1         156 LETIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHhCCCC
Confidence            99999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.67  E-value=2.9e-17  Score=117.71  Aligned_cols=147  Identities=11%  Similarity=0.076  Sum_probs=94.5

Q ss_pred             eeEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEECCeEEEEEEEeCCChhh--------hc-chhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEE--------FD-AITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~--------~~-~~~~~~~   95 (208)
                      +||+++|.+++||  +++++.+..... ...+..........+..++  ..+.+|||+|...        +. ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            6999999999999  356655443221 2222222233344444554  4588999999421        10 1122346


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVKEDINVN  175 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~i~  175 (208)
                      +.+|++++|+|.+++.+.....-+     ......+++++.||.|+.++  ...++... ....+.+++++||++|.|++
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~-----~~~~~~~~i~~~~k~d~~~~--~~~~~~~~-~~~~~~~~~~vSA~~g~gi~  150 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKIL-----ERIKNKRYLVVINKVDVVEK--INEEEIKN-KLGTDRHMVKISALKGEGLE  150 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-----HHHTTSSEEEEEEECSSCCC--CCHHHHHH-HHTCSTTEEEEEGGGTCCHH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhh-----hhcccccceeeeeeccccch--hhhHHHHH-HhCCCCcEEEEECCCCCCHH
Confidence            789999999999998776543222     22236889999999998653  23333221 11234589999999999999


Q ss_pred             HHHHHHHHH
Q psy2518         176 SIFRYLTTK  184 (208)
Q Consensus       176 ~~f~~i~~~  184 (208)
                      ++++.|.++
T Consensus       151 ~L~~~I~ke  159 (160)
T d1xzpa2         151 KLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999988663

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=8e-17  Score=120.31  Aligned_cols=114  Identities=13%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-chhHhhhcCCcEEEEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-AITKAYYRGAQACVITF  105 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-~~~~~~~~~~d~ii~v~  105 (208)
                      +|+++|..++||  +++++..+.+...+ ||++.++....+ .++..+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999  46888888887654 677654433222 25567789999999999886 46778889999999999


Q ss_pred             eCCChhhH-HHHHHHHHHHHhh----cCCCCEEEEEeCCCCCCC
Q psy2518         106 STIDRDSF-EAAHSWKMKVENE----CGEIPTVLVQNKIDLLDQ  144 (208)
Q Consensus       106 d~~~~~s~-~~~~~~~~~~~~~----~~~~piivvgnK~Dl~~~  144 (208)
                      |.++..++ .....|+..+...    ...+|++|++||+|+...
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            99997764 4444454444322    226899999999999653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.60  E-value=6e-16  Score=113.12  Aligned_cols=157  Identities=13%  Similarity=0.091  Sum_probs=98.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcccccccc-----cccc--ceeeEEEEECCeEEEEEEEeCCChhhhcchhHhhhc
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSW-----KMKV--SIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAYYR   96 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~-----t~~~--~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~   96 (208)
                      +.++|.++|..++||  +++++.+..-......     ..|.  +.....+..  ....+.++|++|+..|.......+.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL--ENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE--TTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeecccccccccc--CCccccccccccccccccchhhhhh
Confidence            567999999999999  3455543221111110     1111  111122222  2345889999999999888888999


Q ss_pred             CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHHHHHHHHH-h---CCeEEEEecCC
Q psy2518          97 GAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEEADLLSRA-L---GCRLMRTSVKE  170 (208)
Q Consensus        97 ~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~~~~~~~~-~---~~~~~e~Sa~~  170 (208)
                      .+|++++|+|.++....+....| ..+...  +.|+++|.||+|+.......  .+..+.+.+. .   +.+++++||++
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~~~-~~~~~~--~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGEHM-LILDHF--NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             hccccccccccccccchhhhhhh-hhhhhc--CCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            99999999999986544333222 222222  68999999999985421110  1111122221 1   34899999999


Q ss_pred             CCCHHHHHHHHHHHHHH
Q psy2518         171 DINVNSIFRYLTTKCLS  187 (208)
Q Consensus       171 ~~~i~~~f~~i~~~~~~  187 (208)
                      |.|++++++.|.+.+..
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.9e-15  Score=109.65  Aligned_cols=156  Identities=17%  Similarity=0.082  Sum_probs=97.7

Q ss_pred             cceeeeEEEecCceEEE--EEEeeecCccc--cccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-----------
Q psy2518          24 FDAITKAYYRGAQACVI--TFSTIDRDSFE--AAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-----------   88 (208)
Q Consensus        24 ~~~~~ki~~vG~s~~gk--~~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-----------   88 (208)
                      ....+||+++|..++||  +++++.+....  ..+..|. .......+..++..  +.++|++|.....           
T Consensus         5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~--~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTEE--EEESSCSCC-----------CCSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccc-cccceeeeccCCce--eeeeccCCccccccccccccccch
Confidence            34468999999999999  34566554321  2222222 12333445566654  6888998864322           


Q ss_pred             -chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh-----CCe
Q psy2518          89 -AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL-----GCR  162 (208)
Q Consensus        89 -~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~-----~~~  162 (208)
                       ......++.+|++++|+|.+....-+. ..++..+...  +.|+++|+||+|+........++..+..++.     ..+
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~~--~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMERR--GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHHT--TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHHc--CCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence             223345678999999999987544322 3333334333  6899999999998654444444444433332     248


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHH
Q psy2518         163 LMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       163 ~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ++++||++|.|++++++.|.+.+
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999986654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=8.7e-15  Score=106.77  Aligned_cols=148  Identities=11%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh-----------hh----hcchh
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ-----------EE----FDAIT   91 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~-----------~~----~~~~~   91 (208)
                      .|+++|.+++||  +++++.+........|....+  ...+...+    +.+|||||.           +.    +....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~--~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeec--cccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            489999999999  456665555433222211112  22233332    578999993           11    12223


Q ss_pred             HhhhcCCcEEEEEEeCCChhhHHHHH----------HHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhC-
Q psy2518          92 KAYYRGAQACVITFSTIDRDSFEAAH----------SWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALG-  160 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~-  160 (208)
                      ...++.+|++++|+|...+.......          ..+..+...  +.|+++|+||+|+.+..   ++....+....+ 
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~--~~p~iiv~NK~D~~~~~---~~~~~~~~~~~~~  150 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL--DIPTIVAVNKLDKIKNV---QEVINFLAEKFEV  150 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHT--TCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHc--CCCEEEEEeeeehhhhH---HHHHHHHHHHhcc
Confidence            34567899999999987654322211          112222221  68999999999974421   222222333332 


Q ss_pred             ------CeEEEEecCCCCCHHHHHHHHHHHHHH
Q psy2518         161 ------CRLMRTSVKEDINVNSIFRYLTTKCLS  187 (208)
Q Consensus       161 ------~~~~e~Sa~~~~~i~~~f~~i~~~~~~  187 (208)
                            ..++++||++|.|++++++.+.+.+.+
T Consensus       151 ~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         151 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence                  248899999999999999999888754

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=8.9e-16  Score=112.51  Aligned_cols=151  Identities=12%  Similarity=0.106  Sum_probs=90.8

Q ss_pred             eEEEecCceEEE--EEEeeecCcccc-ccccccccceeeEEEEE-CCeEEEEEEEeCCChhhhcc----hhH---hhhcC
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEA-AHSWKMKVSIKRTIKEC-EGEEVRLMLWDTAGQEEFDA----ITK---AYYRG   97 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~----~~~---~~~~~   97 (208)
                      .|.++|.+++||  +++++....... .+.++. .+.......+ ++.  .+.+|||||..+...    +..   ..+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T-~~~~~~~~~~~~~~--~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTT-LVPNLGMVETDDGR--SFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSC-CCCCEEEEECSSSC--EEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCce-EeeeeceeEecCCc--EEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            689999999999  345554433221 222221 1222223333 333  468999999633221    122   23467


Q ss_pred             CcEEEEEEeCCChhhHHHHH--HHHHHHHhhc----CCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh--CCeEEEEecC
Q psy2518          98 AQACVITFSTIDRDSFEAAH--SWKMKVENEC----GEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL--GCRLMRTSVK  169 (208)
Q Consensus        98 ~d~ii~v~d~~~~~s~~~~~--~~~~~~~~~~----~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sa~  169 (208)
                      ++.++++.+....+......  .+........    .+.|+++|+||+|+.+.    .+..+.+.+..  +.+++.+||+
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~  155 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAV  155 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSC
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECC
Confidence            89999888876554332221  1111111111    16899999999998542    23334444444  5689999999


Q ss_pred             CCCCHHHHHHHHHHHHH
Q psy2518         170 EDINVNSIFRYLTTKCL  186 (208)
Q Consensus       170 ~~~~i~~~f~~i~~~~~  186 (208)
                      +|.|++++++.+.+.+.
T Consensus       156 ~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         156 TREGLRELLFEVANQLE  172 (185)
T ss_dssp             CSSTTHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHhhh
Confidence            99999999999888763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.48  E-value=1.5e-14  Score=109.47  Aligned_cols=119  Identities=17%  Similarity=0.134  Sum_probs=80.1

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCH
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~  149 (208)
                      +....++.++||||++.|.......+..+|++|+|+|+.+.-.-+... .+..+...  +.|+|++.||+|+........
T Consensus        66 ~~~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~iivlNK~D~~~~~~~~~  142 (227)
T d1g7sa4          66 RETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRMY--RTPFVVAANKIDRIHGWRVHE  142 (227)
T ss_dssp             GGTCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHH-HHHHHHHT--TCCEEEEEECGGGSTTCCCCT
T ss_pred             cccccccccccccceecccccchhcccccceEEEEEecccCcccchhH-HHHHhhcC--CCeEEEEEECccCCCchhhhh
Confidence            334456899999999999887778889999999999998754433322 22223222  689999999999854321110


Q ss_pred             -------------H-------HH----HHHHHH--------------hCCeEEEEecCCCCCHHHHHHHHHHHHHHHhhh
Q psy2518         150 -------------E-------EA----DLLSRA--------------LGCRLMRTSVKEDINVNSIFRYLTTKCLSELRQ  191 (208)
Q Consensus       150 -------------~-------~~----~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~  191 (208)
                                   .       ..    ..+...              ...+++.+||++|.|++++++.+.....+..++
T Consensus       143 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~~~  222 (227)
T d1g7sa4         143 GRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYLRE  222 (227)
T ss_dssp             TCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHCSG
T ss_pred             hHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                         0       00    001110              013689999999999999999888766554443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=2.5e-13  Score=100.03  Aligned_cols=154  Identities=12%  Similarity=0.060  Sum_probs=85.2

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCCh----------hhhcc---
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ----------EEFDA---   89 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~----------~~~~~---   89 (208)
                      ...-+|+++|.+++||  +++++.+........+..+............   .+.+.|+.+.          +....   
T Consensus        21 ~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1svia_          21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHh
Confidence            3445899999999999  3555554443222222222111122222222   2334454442          11111   


Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHh----CCeEEE
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRAL----GCRLMR  165 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~----~~~~~e  165 (208)
                      .....+..+++++++.|.+++..-.. .+++..+...  +.|+++|+||+|+.++... .+..+.+.+.+    +.+++.
T Consensus        98 ~~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~~--~~piivv~NK~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~~  173 (195)
T d1svia_          98 TYITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKYY--GIPVIVIATKADKIPKGKW-DKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT--TCCEEEEEECGGGSCGGGH-HHHHHHHHHHHTCCTTSEEEE
T ss_pred             hhhccccchhhhhhhhhccccccccc-cccccccccc--cCcceechhhccccCHHHH-HHHHHHHHHHhcccCCCCEEE
Confidence            12233457899999999986543221 2344444433  6899999999998543322 23333333333    347999


Q ss_pred             EecCCCCCHHHHHHHHHHHH
Q psy2518         166 TSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       166 ~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      +||++|.|++++++.+.+.+
T Consensus       174 ~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         174 FSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999987765

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.31  E-value=3.7e-12  Score=93.81  Aligned_cols=112  Identities=13%  Similarity=0.169  Sum_probs=76.3

Q ss_pred             EEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HH
Q psy2518          73 EVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PE  150 (208)
Q Consensus        73 ~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~  150 (208)
                      ..++.+.||||+..|.......++.+|++++|.|..+...-....+.+..+.. ....+++++.||.|+.+.....  .+
T Consensus        77 ~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~~~iiv~inK~D~~d~~~~~~~~~  155 (195)
T d1kk1a3          77 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYR  155 (195)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             ceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH-hcCccceeeeecccchhhHHHHHHHH
Confidence            46789999999999988888888999999999999875322222222222222 2235688889999985532111  11


Q ss_pred             HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         151 EADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       151 ~~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ...++....   .++++++||++|.|++++++.+.+.+
T Consensus       156 ~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         156 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            222223222   25799999999999999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.3e-12  Score=94.58  Aligned_cols=152  Identities=11%  Similarity=0.100  Sum_probs=91.9

Q ss_pred             eeEEEecCceEEE--EEEeeecCccccc-cccccccceeeEEEEECCeEEEEEEEeCCChhhh---------cchhHhhh
Q psy2518          28 TKAYYRGAQACVI--TFSTIDRDSFEAA-HSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF---------DAITKAYY   95 (208)
Q Consensus        28 ~ki~~vG~s~~gk--~~~~~~~~~f~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---------~~~~~~~~   95 (208)
                      -.|.++|.+++||  +++++.+...... +.++............+...  +..||+++....         ........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCce--eEeecCCCceecchhhhhhhhhhccccch
Confidence            3489999999999  4677766554432 22222222223333333333  556888774221         11122234


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRALGC-RLMRTSVKEDINV  174 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sa~~~~~i  174 (208)
                      ..+++++++.|.++...  ....+...+.+  ...|++++.||.|+...+.......+.+...++. +++++||++|.|+
T Consensus        84 ~~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             CCEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             hhcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            56778888888765332  22233333332  2578999999999755433333444555555664 8999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2518         175 NSIFRYLTTKC  185 (208)
Q Consensus       175 ~~~f~~i~~~~  185 (208)
                      +++++.+.+.+
T Consensus       160 ~~L~~~i~~~l  170 (179)
T d1egaa1         160 DTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999987765

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.24  E-value=1.6e-11  Score=91.11  Aligned_cols=111  Identities=14%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--HHH
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--PEE  151 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--~~~  151 (208)
                      ..+.+.||||+..|.......+..+|++|+|.|..+.-.-....+.+..+ ...+-.|+|++.||+|+.+.....  .++
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~  164 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GIIGVKNLIIVQNKVDVVSKEEALSQYRQ  164 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTTCCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HHcCCceeeeccccCCCccchHHHHHHHH
Confidence            46899999999999887777888999999999998753111222222222 222245889999999995422111  111


Q ss_pred             HHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHH
Q psy2518         152 ADLLSRAL---GCRLMRTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       152 ~~~~~~~~---~~~~~e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      ...+....   +++++.+||++|.||+++++.+...+
T Consensus       165 ~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         165 IKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            11222222   35899999999999999999877653

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.23  E-value=2.2e-12  Score=95.15  Aligned_cols=154  Identities=14%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             eeeEEEecCceEEEE--EEeeec----------------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc
Q psy2518          27 ITKAYYRGAQACVIT--FSTIDR----------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD   88 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~--~~~~~~----------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~   88 (208)
                      .++|.++|.-..||+  ..++..                +...++..  .|+.+......++.....+.+.||||+..|.
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~--rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERA--RGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEE--TTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcC--CCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            478999999999992  222221                11112222  2333334445555556678999999999998


Q ss_pred             chhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC---CHHHHHHHHHHhC-----
Q psy2518          89 AITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV---APEEADLLSRALG-----  160 (208)
Q Consensus        89 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v---~~~~~~~~~~~~~-----  160 (208)
                      ......++.+|++++|+|.++...-+. .+.+..+.. ....|+|++.||.|+......   -..+...+....+     
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT-~~~~~~a~~-~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ-IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH-TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhH-HHHHHHHHH-hcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            877788899999999999997644332 222222222 224688999999998542211   1123333444444     


Q ss_pred             CeEEEEecCCC----------CCHHHHHHHHHHH
Q psy2518         161 CRLMRTSVKED----------INVNSIFRYLTTK  184 (208)
Q Consensus       161 ~~~~e~Sa~~~----------~~i~~~f~~i~~~  184 (208)
                      ++++.+||++|          .++.++++.+.+.
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            46999999998          4778887766543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.1e-12  Score=97.16  Aligned_cols=110  Identities=14%  Similarity=0.209  Sum_probs=76.1

Q ss_pred             eEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhhcchhHhh----hcCCcEEE
Q psy2518          29 KAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFDAITKAY----YRGAQACV  102 (208)
Q Consensus        29 ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~----~~~~d~ii  102 (208)
                      .|+++|.+++||  +++++.++.+.    ++.+.+.....+..++  ..+.+|||+|++.+...+..+    ...++.++
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~~~----~~tt~~~~~~~~~~~~--~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i   78 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDSVR----PTVVSQEPLSAADYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI   78 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSCC----CBCCCSSCEEETTGGG--SSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC----CeEEecceEEEEEeCC--eEEEEEecccccchhhHHHHHHHHHhhhccccc
Confidence            689999999999  46777776654    4444344444444444  457899999998876655544    34568888


Q ss_pred             EEEeCC-ChhhHHHHHHHHHHHH----hhcC-CCCEEEEEeCCCCCCC
Q psy2518         103 ITFSTI-DRDSFEAAHSWKMKVE----NECG-EIPTVLVQNKIDLLDQ  144 (208)
Q Consensus       103 ~v~d~~-~~~s~~~~~~~~~~~~----~~~~-~~piivvgnK~Dl~~~  144 (208)
                      +++|.. +..+++....|+....    .... +.|+++++||+|+.+.
T Consensus        79 ~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          79 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             eEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888866 4667777766664432    3333 7999999999998653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=1.2e-10  Score=84.05  Aligned_cols=160  Identities=12%  Similarity=0.002  Sum_probs=78.6

Q ss_pred             ccccceeeeEEEecCceEEE--EEEeeecCccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh-------cchh
Q psy2518          21 QEEFDAITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF-------DAIT   91 (208)
Q Consensus        21 ~~~~~~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~-------~~~~   91 (208)
                      +-+-+..++|+++|.+++||  +++++....+........+................+..++..+....       ....
T Consensus        10 ~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1puia_          10 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRAL   89 (188)
T ss_dssp             GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHH
T ss_pred             HCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhh
Confidence            33456679999999999999  45666555544332222221222222223333333333333322111       1111


Q ss_pred             Hh---hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHH---Hh--CCeE
Q psy2518          92 KA---YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSR---AL--GCRL  163 (208)
Q Consensus        92 ~~---~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~---~~--~~~~  163 (208)
                      ..   .....+.++.+.+......... ..++......  ..++++++||.|+.+.... .+..+.+.+   ..  ..++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~v~~k~D~~~~~~~-~~~~~~~~~~l~~~~~~~~~  165 (188)
T d1puia_          90 GEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVDS--NIAVLVLLTKADKLASGAR-KAQLNMVREAVLAFNGDVQV  165 (188)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHHT--TCCEEEEEECGGGSCHHHH-HHHHHHHHHHHGGGCSCEEE
T ss_pred             hhhhhhhhheeEEEEeecccccchhHH-HHHHHHhhhc--cccccchhhhhhccCHHHH-HHHHHHHHHHHHhhCCCCcE
Confidence            11   1234445555555554433222 3334443333  6789999999998542111 111122222   22  2378


Q ss_pred             EEEecCCCCCHHHHHHHHHHH
Q psy2518         164 MRTSVKEDINVNSIFRYLTTK  184 (208)
Q Consensus       164 ~e~Sa~~~~~i~~~f~~i~~~  184 (208)
                      +.+||++|.||+++++.|.+-
T Consensus       166 i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         166 ETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999987553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.09  E-value=2.8e-11  Score=89.65  Aligned_cols=140  Identities=13%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             eeeEEEecCceEEEE--EEeeec-----------------CccccccccccccceeeEEEEECCeEEEEEEEeCCChhhh
Q psy2518          27 ITKAYYRGAQACVIT--FSTIDR-----------------DSFEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEF   87 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~--~~~~~~-----------------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~   87 (208)
                      .++|.++|..+.||+  +.+++.                 +...++....+.++.....+..++  .++.|.||||+..|
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~--~~i~iiDtPGh~df   80 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--RHYSHVDCPGHADY   80 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS--CEEEEEECCCSGGG
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCC--eEEEEEeCCCchhh
Confidence            479999999999992  222211                 111111111222333344444444  45789999999999


Q ss_pred             cchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCCCCC---HHHHHHHHHHhC---
Q psy2518          88 DAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQSVVA---PEEADLLSRALG---  160 (208)
Q Consensus        88 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~~v~---~~~~~~~~~~~~---  160 (208)
                      .......++.+|++|+|+|.++....+....|......   +.| ++++.||+|+.+....-   .++...+....+   
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~---gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  157 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  157 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence            88888889999999999999987666554444333222   455 77789999984421110   122233333332   


Q ss_pred             --CeEEEEecCCC
Q psy2518         161 --CRLMRTSVKED  171 (208)
Q Consensus       161 --~~~~e~Sa~~~  171 (208)
                        ++++..||..+
T Consensus       158 ~~i~~i~~sa~~~  170 (204)
T d2c78a3         158 DEVPVIRGSALLA  170 (204)
T ss_dssp             TTSCEEECCHHHH
T ss_pred             ccceeeeeechhh
Confidence              46888888643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=1.4e-09  Score=83.70  Aligned_cols=113  Identities=14%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             ceeeeEEEecCceEEEE--EEee--ecCcc----------------ccccccccccceeeEEEEECCeEEEEEEEeCCCh
Q psy2518          25 DAITKAYYRGAQACVIT--FSTI--DRDSF----------------EAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQ   84 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk~--~~~~--~~~~f----------------~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~   84 (208)
                      .+..+|.++|..++||+  .-++  ..+..                .++....+.+......+.+++  .+++|.||||+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~--~~~n~iDtPG~   81 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDAPGH   81 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETT--EEEEEECCCSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCC--eEEEEecCCch
Confidence            45678999999999992  1111  01111                011111112222334444444  45899999999


Q ss_pred             hhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          85 EEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        85 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ..|.......++-+|++++|+|..+.-.-+...-|-.. .+.  +.|.+++.||.|..
T Consensus        82 ~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~~~--~lP~i~fINKmDr~  136 (276)
T d2bv3a2          82 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EKY--KVPRIAFANKMDKT  136 (276)
T ss_dssp             SSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-HTT--TCCEEEEEECTTST
T ss_pred             hhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-HHc--CCCEEEEEeccccc
Confidence            99999889999999999999999987766665556333 333  79999999999974

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.03  E-value=6.8e-10  Score=83.04  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=68.9

Q ss_pred             CeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCC--
Q psy2518          71 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVA--  148 (208)
Q Consensus        71 ~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~--  148 (208)
                      .....+.+.||||++.|......-...+|++++|.|..+...-+....|.  +....+-..++++.||.|+.+..+..  
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~--~~~~~gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSY--IASLLGIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHH--HHHHTTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHH--HHHHcCCCEEEEEEEccccccccceehh
Confidence            33456899999999999888888889999999999998754433322222  22222223478889999986532111  


Q ss_pred             --HHHHHHHHHHhCC-----eEEEEecCCCCCHHH
Q psy2518         149 --PEEADLLSRALGC-----RLMRTSVKEDINVNS  176 (208)
Q Consensus       149 --~~~~~~~~~~~~~-----~~~e~Sa~~~~~i~~  176 (208)
                        .++...+.+..++     +++.+||++|.|+.+
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence              1223334444443     678999999998843

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.99  E-value=2.3e-09  Score=82.09  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=57.7

Q ss_pred             eEEEEECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          64 RTIKECEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        64 ~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ...+.+++.  +++++||||+..|.......++-+|++++|.|..+.-.-+....|......   +.|.+++.||.|..
T Consensus        59 ~~~~~~~~~--~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          59 VAPLLFRGH--RVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEEEEETTE--EEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             ccccccccc--ceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhc---cccccccccccccc
Confidence            344455554  589999999999998888899999999999999987666655555433333   68999999999963

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=2.6e-09  Score=80.67  Aligned_cols=145  Identities=11%  Similarity=0.036  Sum_probs=89.7

Q ss_pred             eeeEEEecCceEEEE-E-Eeee---c----------------------------CccccccccccccceeeEEEEECCeE
Q psy2518          27 ITKAYYRGAQACVIT-F-STID---R----------------------------DSFEAAHSWKMKVSIKRTIKECEGEE   73 (208)
Q Consensus        27 ~~ki~~vG~s~~gk~-~-~~~~---~----------------------------~~f~~~~~~t~~~~~~~~~~~~~~~~   73 (208)
                      .++|.++|....||+ + -+++   +                            +...++....+.++.....+..++  
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--   83 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK--   83 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC--
Confidence            479999999999992 2 1111   0                            111122333344444445555544  


Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhcCCCC-EEEEEeCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDS-------FEAAHSWKMKVENECGEIP-TVLVQNKIDLLDQS  145 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s-------~~~~~~~~~~~~~~~~~~p-iivvgnK~Dl~~~~  145 (208)
                      .++.|.||||+..|......-.+-+|++|+|.|.....-       -+....|. .. +.. ..| +|++.||.|+.+..
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~-~~-~~~-gv~~iiv~iNKmD~~~~d  160 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHAL-LA-FTL-GVRQLIVAVNKMDSVKWD  160 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHH-HH-HHT-TCCEEEEEEECGGGGTTC
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHH-HH-HHc-CCCeEEEEEECCCCCCCC
Confidence            679999999999998888888899999999999986421       11122221 11 112 444 78899999985422


Q ss_pred             CCC----HHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518         146 VVA----PEEADLLSRALG-----CRLMRTSVKEDINVNS  176 (208)
Q Consensus       146 ~v~----~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~  176 (208)
                      .-.    .++...+....+     ++++.+||..|.|+-+
T Consensus       161 ~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         161 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            111    123334444444     4689999999998654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.73  E-value=8.3e-09  Score=78.16  Aligned_cols=104  Identities=21%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             EEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRD---SFE---AAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV  147 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v  147 (208)
                      ..+.+.||||+..|......-..-+|++++|.|..+..   ++.   ...+.+. +....+-.+++++.||.|+.... .
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~-l~~~~~i~~iiv~iNKmD~~~~~-~  179 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPSVQ-W  179 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTTCS-S
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHH-HHHHcCCCeEEEEEEcCCCCccc-h
Confidence            46899999999999888888889999999999998742   110   1111111 11222234588889999985321 1


Q ss_pred             CHH-------HHHHHHHHh-C------CeEEEEecCCCCCHHHHHH
Q psy2518         148 APE-------EADLLSRAL-G------CRLMRTSVKEDINVNSIFR  179 (208)
Q Consensus       148 ~~~-------~~~~~~~~~-~------~~~~e~Sa~~~~~i~~~f~  179 (208)
                      .++       +...+.+.. +      ++++.+||++|.||.++++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            121       112222222 2      4789999999999977654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.67  E-value=1e-08  Score=76.60  Aligned_cols=107  Identities=15%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             ECCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHH------HHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q psy2518          69 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE------AAHSWKMKVENECGEIPTVLVQNKIDLL  142 (208)
Q Consensus        69 ~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~------~~~~~~~~~~~~~~~~piivvgnK~Dl~  142 (208)
                      ++.....+.+.||||+..|......-++-+|++++|+|..+...-+      ...+-+. +.+.....++|++.||.|+.
T Consensus        76 ~~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~-~~~~~~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          76 FETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHII-LAKTMGLDQLIVAVNKMDLT  154 (224)
T ss_dssp             EECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHH-HHHHTTCTTCEEEEECGGGS
T ss_pred             EecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHH-HHHHhCCCceEEEEEcccCC
Confidence            3444567999999999999998888899999999999999752211      1111111 11222345788899999985


Q ss_pred             CCCCCC--H----HHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy2518         143 DQSVVA--P----EEADLLSRALG-----CRLMRTSVKEDINVNS  176 (208)
Q Consensus       143 ~~~~v~--~----~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~  176 (208)
                      ......  .    ++...+...++     ++++.+||..|.|+.+
T Consensus       155 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         155 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            421111  1    12223333333     4689999999998754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1.4e-08  Score=80.20  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=57.9

Q ss_pred             CCeEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          70 EGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        70 ~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      +++.+.+++.||||+..|.......++-+|++++|+|..+.-..+...-|......   +.|++++.||.|.
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr  160 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDR  160 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECccc
Confidence            45678899999999999999888999999999999999998776665555444433   6899999999996

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=3.7e-08  Score=79.69  Aligned_cols=156  Identities=13%  Similarity=0.082  Sum_probs=85.1

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcccccccccccc---ceeeEEEEECCeEEEEEEEeCCChhhhcch-----hHhhh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSFEAAHSWKMKV---SIKRTIKECEGEEVRLMLWDTAGQEEFDAI-----TKAYY   95 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f~~~~~~t~~~---~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-----~~~~~   95 (208)
                      ..++|.++|.+|+||  +++.+.+....+......|+   ......+...+ .-.+.+|||||.......     .....
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~-~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPN-IPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSS-CTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccC-CCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999  45655543332221111111   11112222222 113679999997543221     22335


Q ss_pred             cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCC-------CCCCCCHHHHHH--------HHHHhC
Q psy2518          96 RGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLL-------DQSVVAPEEADL--------LSRALG  160 (208)
Q Consensus        96 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~-------~~~~v~~~~~~~--------~~~~~~  160 (208)
                      ..+|+++++.|..-.+.  + ..+...+.+.  +.|+++|.||+|..       ..+....+...+        .....+
T Consensus       134 ~~~d~~l~~~~~~~~~~--d-~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--D-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--H-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcceEEEEecCCCCCHH--H-HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            67898888876432222  2 2233334333  68999999999952       112222222211        112223


Q ss_pred             C---eEEEEecCCC--CCHHHHHHHHHHHHHH
Q psy2518         161 C---RLMRTSVKED--INVNSIFRYLTTKCLS  187 (208)
Q Consensus       161 ~---~~~e~Sa~~~--~~i~~~f~~i~~~~~~  187 (208)
                      .   ++|.+|+.+.  .++.++.+.+.+.+..
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence            3   5788887654  4888888887776543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.43  E-value=2.6e-07  Score=70.20  Aligned_cols=122  Identities=10%  Similarity=-0.056  Sum_probs=69.3

Q ss_pred             ceeeeEEEecCceEEE--EEEeeecCc-cccccccccccceeeEEEEECCeEEEEEEEeCCChhhhc-------chhHh-
Q psy2518          25 DAITKAYYRGAQACVI--TFSTIDRDS-FEAAHSWKMKVSIKRTIKECEGEEVRLMLWDTAGQEEFD-------AITKA-   93 (208)
Q Consensus        25 ~~~~ki~~vG~s~~gk--~~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~~~~-   93 (208)
                      ...++|+++|.+|+||  +++.+++.. |.....+....+........+|.  .+.++||||.....       ..... 
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~--~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGF--TLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccE--EEEEEeeecccCCcchHHHHHHHHHHH
Confidence            4568999999999999  455555443 32221111111333444455664  58999999953211       11111 


Q ss_pred             -hhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcC---CCCEEEEEeCCCCCCCCCCCH
Q psy2518          94 -YYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECG---EIPTVLVQNKIDLLDQSVVAP  149 (208)
Q Consensus        94 -~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~---~~piivvgnK~Dl~~~~~v~~  149 (208)
                       .....|++++|.+++... +-. ....+..+....+   -.++++|.||+|.......+.
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~-~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~~  167 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNL-DKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPY  167 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHH-HHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCH
T ss_pred             HhcCCCCeEEEEEECCCCCCCHH-HHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCcH
Confidence             134678999999887532 211 1222333333333   357899999999865444443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=7.5e-07  Score=65.90  Aligned_cols=87  Identities=21%  Similarity=0.279  Sum_probs=61.7

Q ss_pred             HhhhcCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH--hCCeEEEEec
Q psy2518          92 KAYYRGAQACVITFSTIDRD-SFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA--LGCRLMRTSV  168 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sa  168 (208)
                      +....+.|.+++|+++.+|+ +...+.+|+......  ++|.+||.||+||.++.  ..+....+...  .+++++.+||
T Consensus         5 RP~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~~--~i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           5 KPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKN--ELETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHT--TCEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHc--CCCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEecc
Confidence            34567899999999998754 566677777665544  79999999999995421  11122223332  2458899999


Q ss_pred             CCCCCHHHHHHHHH
Q psy2518         169 KEDINVNSIFRYLT  182 (208)
Q Consensus       169 ~~~~~i~~~f~~i~  182 (208)
                      +++.|++++...+.
T Consensus        81 ~~~~g~~~L~~~l~   94 (225)
T d1u0la2          81 KTGMGIEELKEYLK   94 (225)
T ss_dssp             TTCTTHHHHHHHHS
T ss_pred             ccchhHhhHHHHhc
Confidence            99999999887653

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=5.4e-06  Score=63.19  Aligned_cols=89  Identities=11%  Similarity=0.019  Sum_probs=64.6

Q ss_pred             hhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH---hCCeEEEE
Q psy2518          90 ITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA---LGCRLMRT  166 (208)
Q Consensus        90 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~e~  166 (208)
                      .....++.+|++++|.|.-+|.+..+  ..+..+.+   +.|.++|.||+||.+     .+...++...   .+...+.+
T Consensus         8 ~i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~~---~Kp~IlVlNK~DLv~-----~~~~~~w~~~f~~~~~~~i~i   77 (273)
T d1puja_           8 EVTEKLKLIDIVYELVDARIPMSSRN--PMIEDILK---NKPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSI   77 (273)
T ss_dssp             HHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHCS---SSCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEEC
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHHc---CCCeEEEEECccCCc-----hHHHHHHHHHHHhcCCcccee
Confidence            34557899999999999988876543  22333333   689999999999944     3444444443   35689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q psy2518         167 SVKEDINVNSIFRYLTTKCLSE  188 (208)
Q Consensus       167 Sa~~~~~i~~~f~~i~~~~~~~  188 (208)
                      ||+++.++.++...+.+.+...
T Consensus        78 sa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          78 NSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHHH
T ss_pred             ecccCCCccccchhhhhhhhhh
Confidence            9999999998888777665544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.2e-06  Score=64.96  Aligned_cols=87  Identities=18%  Similarity=0.272  Sum_probs=62.2

Q ss_pred             HhhhcCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHH---HHHHhCCeEEEEe
Q psy2518          92 KAYYRGAQACVITFSTIDR-DSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADL---LSRALGCRLMRTS  167 (208)
Q Consensus        92 ~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~---~~~~~~~~~~e~S  167 (208)
                      +....+.|.+++|+++.+| -++..+.+++......  +++.+||.||+||.++.. ..+....   .....|++++.+|
T Consensus         5 RP~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~--~i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           5 RPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEAN--DIQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTT--TCEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECC
T ss_pred             CCCccccCEEEEEEECCCCCCCHHHHHHHHHHHHHc--CCCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeee
Confidence            3445789999999999876 4667777777665544  789999999999955311 1122222   2344689999999


Q ss_pred             cCCCCCHHHHHHHH
Q psy2518         168 VKEDINVNSIFRYL  181 (208)
Q Consensus       168 a~~~~~i~~~f~~i  181 (208)
                      |+++.|++++...+
T Consensus        82 a~~~~gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQDSLADIIPHF   95 (231)
T ss_dssp             HHHHTTCTTTGGGG
T ss_pred             cCChhHHHHHHHhh
Confidence            99999988876654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.96  E-value=1.8e-05  Score=58.51  Aligned_cols=112  Identities=15%  Similarity=0.043  Sum_probs=65.3

Q ss_pred             EEEEEEeCCChhhhcchhHh---h--hcCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCC
Q psy2518          74 VRLMLWDTAGQEEFDAITKA---Y--YRGAQACVITFSTID---RDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQS  145 (208)
Q Consensus        74 ~~l~i~Dt~g~~~~~~~~~~---~--~~~~d~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~  145 (208)
                      ..+.+.|++|+..+......   .  ....++++++.|...   +..+............. -..|.+++.||.|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR-LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH-HTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH-hCCCceeeeeccccccHH
Confidence            34788999998765332221   1  235678899999753   33333222111111111 168999999999985421


Q ss_pred             CCCH-----------------------HHHHH---HHHH--hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy2518         146 VVAP-----------------------EEADL---LSRA--LGCRLMRTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       146 ~v~~-----------------------~~~~~---~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      ....                       +....   ...+  ..++++.+||++|+|+++++..+.+..+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~~  242 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  242 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            1000                       00000   0111  1358999999999999999998877644

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00072  Score=51.41  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=42.7

Q ss_pred             EEEEeCCChhh-------------hcchhHhhhcCCcE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCC
Q psy2518          76 LMLWDTAGQEE-------------FDAITKAYYRGAQA-CVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDL  141 (208)
Q Consensus        76 l~i~Dt~g~~~-------------~~~~~~~~~~~~d~-ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl  141 (208)
                      +.++|+||...             ...+...|+...+. +++|.+.+...+-.....|...+...  ..++++|.||+|+
T Consensus       127 l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D~  204 (299)
T d2akab1         127 LTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDL  204 (299)
T ss_dssp             EEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGGG
T ss_pred             eeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEecccc
Confidence            77999999522             22445567777764 55666666555544445555544332  4689999999998


Q ss_pred             CCC
Q psy2518         142 LDQ  144 (208)
Q Consensus       142 ~~~  144 (208)
                      ..+
T Consensus       205 ~~~  207 (299)
T d2akab1         205 MDE  207 (299)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            553

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.03  E-value=0.00069  Score=52.41  Aligned_cols=85  Identities=13%  Similarity=0.054  Sum_probs=51.8

Q ss_pred             hcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCCCHHHHHHHHHH----------hCCeEE
Q psy2518          95 YRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVVAPEEADLLSRA----------LGCRLM  164 (208)
Q Consensus        95 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~  164 (208)
                      ..-+|.+++|......+..+..+   ..+.    ..+=++|.||+|+.+...........+...          +.-+++
T Consensus       162 ~~~~D~~v~v~~p~~GD~iQ~~k---~gil----E~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~  234 (323)
T d2qm8a1         162 ADLTDFFLVLMLPGAGDELQGIK---KGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVV  234 (323)
T ss_dssp             HTTSSEEEEEECSCC------CC---TTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEE
T ss_pred             hcccceEEEEeeccchhhhhhhh---hhHh----hhhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceE
Confidence            35699999999988776544321   1111    245588999999855322222222222222          224799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKCL  186 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~~  186 (208)
                      .|||++|.|++++++.+.+..-
T Consensus       235 ~~Sa~~g~Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         235 TISGLHGKGLDSLWSRIEDHRS  256 (323)
T ss_dssp             EEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHH
Confidence            9999999999999999876543

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.0025  Score=47.97  Aligned_cols=41  Identities=10%  Similarity=0.007  Sum_probs=28.0

Q ss_pred             CCCEEEEEeCCCCCCCCCCCHHHHHHHHHHhCCeEEEEecC
Q psy2518         129 EIPTVLVQNKIDLLDQSVVAPEEADLLSRALGCRLMRTSVK  169 (208)
Q Consensus       129 ~~piivvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~  169 (208)
                      ..|++.+.|..+......-..+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            57899999976532211112455666777888899999995

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.001  Score=51.47  Aligned_cols=85  Identities=14%  Similarity=0.088  Sum_probs=48.9

Q ss_pred             hhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCCCCCCCCC--CHHHHHHHHHH-------hCCeEE
Q psy2518          94 YYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTVLVQNKIDLLDQSVV--APEEADLLSRA-------LGCRLM  164 (208)
Q Consensus        94 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~Dl~~~~~v--~~~~~~~~~~~-------~~~~~~  164 (208)
                      ....+|.+++|.++...+..+..+.   .+..    .+=++|.||+|+......  ...+.......       +..+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e----~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKK---GLME----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCH---HHHH----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhch---hhhc----cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            4567999999988766555443322   2222    244778899998542111  01111111111       123799


Q ss_pred             EEecCCCCCHHHHHHHHHHHH
Q psy2518         165 RTSVKEDINVNSIFRYLTTKC  185 (208)
Q Consensus       165 e~Sa~~~~~i~~~f~~i~~~~  185 (208)
                      .|||++|.|++++++.|.+..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHH
Confidence            999999999999999987654

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.38  E-value=0.0042  Score=47.14  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             eeeeEEEecCceEEE--EEEeeecCcc--ccccc-cccccceeeEEEEECC---------------eEEEEEEEeCCChh
Q psy2518          26 AITKAYYRGAQACVI--TFSTIDRDSF--EAAHS-WKMKVSIKRTIKECEG---------------EEVRLMLWDTAGQE   85 (208)
Q Consensus        26 ~~~ki~~vG~s~~gk--~~~~~~~~~f--~~~~~-~t~~~~~~~~~~~~~~---------------~~~~l~i~Dt~g~~   85 (208)
                      ..+||-++|..++||  +|+.+.....  ..+|+ .|+...  .-.+.+..               ....+++.|.+|..
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn--~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE--EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT--EEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCC--eEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            358999999999999  4565553322  23443 222211  11223322               12468999999863


Q ss_pred             hh----cchhHh---hhcCCcEEEEEEeCCC
Q psy2518          86 EF----DAITKA---YYRGAQACVITFSTID  109 (208)
Q Consensus        86 ~~----~~~~~~---~~~~~d~ii~v~d~~~  109 (208)
                      .-    ..+...   .++.+|+++.|.|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            22    223333   4689999999999855

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.0059  Score=41.97  Aligned_cols=40  Identities=45%  Similarity=0.848  Sum_probs=26.1

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...++..+.|.+||++|++++....+.++.+..++...+.
T Consensus        49 ~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d   88 (170)
T d2g6ba1          49 LDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYD   88 (170)
T ss_dssp             EEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEE
T ss_pred             EEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEec
Confidence            3456788999999999999999999988888888876554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.16  E-value=0.04  Score=41.43  Aligned_cols=67  Identities=24%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             EEEEEeCCChhh-------------hcchhHhhhcCCcEEEEEEe-CCChhhHHHHHHHHHHHHhhcCCCCEEEEEeCCC
Q psy2518          75 RLMLWDTAGQEE-------------FDAITKAYYRGAQACVITFS-TIDRDSFEAAHSWKMKVENECGEIPTVLVQNKID  140 (208)
Q Consensus        75 ~l~i~Dt~g~~~-------------~~~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~~~~piivvgnK~D  140 (208)
                      .+.|+||||...             ...+...|+..++.+++++. .+....-.....+...+...  ..++++|.||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~--~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcC--CCeEEEEEeccc
Confidence            477999999532             23466678899998777764 33222222233343333221  468999999999


Q ss_pred             CCC
Q psy2518         141 LLD  143 (208)
Q Consensus       141 l~~  143 (208)
                      ...
T Consensus       210 ~~~  212 (306)
T d1jwyb_         210 LMD  212 (306)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            853

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.31  E-value=0.0071  Score=41.35  Aligned_cols=40  Identities=48%  Similarity=0.895  Sum_probs=31.2

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      .+.++..+.+.+||++|++.|+...+.++-+..++.-.+.
T Consensus        44 i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   83 (166)
T d1g16a_          44 VDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYD   83 (166)
T ss_dssp             EESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEE
T ss_pred             EEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            4567889999999999999998888777666666655443

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.0087  Score=41.13  Aligned_cols=39  Identities=51%  Similarity=0.966  Sum_probs=30.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.|.+||++|+++|....+.++.+..++.-.+.
T Consensus        48 ~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d   86 (171)
T d2ew1a1          48 EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYD   86 (171)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEE
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeee
Confidence            456788999999999999998888777777766655443

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.37  E-value=0.017  Score=43.94  Aligned_cols=38  Identities=16%  Similarity=0.093  Sum_probs=22.0

Q ss_pred             eEEEEEEEeCCChhhh----cchhHh---hhcCCcEEEEEEeCCC
Q psy2518          72 EEVRLMLWDTAGQEEF----DAITKA---YYRGAQACVITFSTID  109 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~----~~~~~~---~~~~~d~ii~v~d~~~  109 (208)
                      ....++++|+||.-..    ..+...   .++.+|+++.|+|..+
T Consensus        69 ~~~~i~~~D~pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          69 ALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             EEEEEEEEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             ccccEEEEECCCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            3467999999996332    223333   3568999999999863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.00  E-value=0.023  Score=38.83  Aligned_cols=39  Identities=41%  Similarity=0.869  Sum_probs=30.5

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...+..+.+.+||++|+++|..+.+.++.+..++...+.
T Consensus        48 ~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d   86 (169)
T d3raba_          48 YRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYD   86 (169)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEE
T ss_pred             EeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            445677899999999999999888877777776665443

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.025  Score=38.75  Aligned_cols=49  Identities=31%  Similarity=0.617  Sum_probs=39.8

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ...++..+.+.+||++|++++....+.++.+..++...+......+|..
T Consensus        45 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~   93 (170)
T d1i2ma_          45 FHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKN   93 (170)
T ss_dssp             ECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTT
T ss_pred             cccccccccccccccccccccceecchhcccccchhhccccccccccch
Confidence            3467889999999999999999999998888888887666555555554

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.79  E-value=0.018  Score=40.35  Aligned_cols=40  Identities=45%  Similarity=0.912  Sum_probs=29.5

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..+++..+.+.+||++|+++|+...+.++.+..++.-.+.
T Consensus        48 i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d   87 (194)
T d2bcgy1          48 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYD   87 (194)
T ss_dssp             EEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEE
T ss_pred             EEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEe
Confidence            3457888999999999999998877666655555554333

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.027  Score=39.29  Aligned_cols=47  Identities=36%  Similarity=0.615  Sum_probs=37.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..++..+.+.+||++|+++|+...+.++.+..++...+......+|.
T Consensus        45 ~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~   91 (191)
T d2ngra_          45 MIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFE   91 (191)
T ss_dssp             EETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHH
T ss_pred             eeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHH
Confidence            45778899999999999999999999888888887766544444454

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.55  E-value=0.055  Score=36.92  Aligned_cols=39  Identities=46%  Similarity=0.934  Sum_probs=24.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.+.+||++|++.|....+.++-+..++...+.
T Consensus        49 ~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d   87 (173)
T d2fu5c1          49 ELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYD   87 (173)
T ss_dssp             EETTEEEEEEEEEC---------CCTTTTTCSEEEEEEE
T ss_pred             EECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEE
Confidence            456778999999999999999998888888888776554

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.40  E-value=0.03  Score=38.47  Aligned_cols=48  Identities=35%  Similarity=0.623  Sum_probs=36.1

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ....+..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus        43 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~   90 (177)
T d1kmqa_          43 IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE   90 (177)
T ss_dssp             EEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHH
T ss_pred             ccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHH
Confidence            346678899999999999999999888888887777655433333343

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.029  Score=38.94  Aligned_cols=47  Identities=34%  Similarity=0.571  Sum_probs=36.8

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..++..+.|.+||++|++.|+...+.++.+..++...+......+|.
T Consensus        51 ~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~   97 (185)
T d2atxa1          51 TVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQ   97 (185)
T ss_dssp             ESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHH
T ss_pred             eeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHH
Confidence            35678899999999999999999999988888887766543344443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.023  Score=38.76  Aligned_cols=39  Identities=28%  Similarity=0.370  Sum_probs=24.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++..+.|.+||++|+++++...+.++.+..++...+.
T Consensus        42 ~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d   80 (168)
T d2gjsa1          42 VVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS   80 (168)
T ss_dssp             EETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEE
T ss_pred             eccccccceeeeecccccccceecccchhhhhhhceecc
Confidence            457888999999999999988877777777777665444

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.79  E-value=0.061  Score=37.00  Aligned_cols=45  Identities=16%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             cCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           6 CEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         6 ~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      .....+.+.+||++||++|+.....++.+..++...+.......|
T Consensus        37 ~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~   81 (195)
T d1svsa1          37 FTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLV   81 (195)
T ss_dssp             EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCB
T ss_pred             EEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchH
Confidence            345568899999999999999999999999999876554333444

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.56  E-value=0.065  Score=36.86  Aligned_cols=49  Identities=22%  Similarity=0.492  Sum_probs=37.4

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEA   52 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~~   52 (208)
                      ...++..+.+.+||++|++.+....+.++.+..++...+......+|..
T Consensus        43 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~   91 (179)
T d1m7ba_          43 FEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDS   91 (179)
T ss_dssp             EECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred             ccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHH
Confidence            4567889999999999999999888888888877776655444444443

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.17  E-value=0.045  Score=37.05  Aligned_cols=40  Identities=43%  Similarity=0.931  Sum_probs=32.2

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...++..+.+.+||++|+++++.+.+.++.+..++...+.
T Consensus        46 ~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d   85 (166)
T d1z0fa1          46 IEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYD   85 (166)
T ss_dssp             EEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEE
T ss_pred             EEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEec
Confidence            3467788999999999999999888888877777765444

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.50  E-value=2.8  Score=28.98  Aligned_cols=78  Identities=10%  Similarity=0.155  Sum_probs=50.8

Q ss_pred             eEEEEEEEeCCChhhhcchhHhhhcCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCEE-EEEeCCCCCCCCCCCHH
Q psy2518          72 EEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFEAAHSWKMKVENECGEIPTV-LVQNKIDLLDQSVVAPE  150 (208)
Q Consensus        72 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~pii-vvgnK~Dl~~~~~v~~~  150 (208)
                      +.+.+.++|+++...  ......+..+|.++++...+ ..++..+.+....+.+.  +.|++ +|.|+.+..+ +.+..+
T Consensus       110 ~~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~--~~~~~giv~N~~~~~~-~~~~~~  183 (237)
T d1g3qa_         110 DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA--GLAILGFVLNRYGRSD-RDIPPE  183 (237)
T ss_dssp             GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT--TCEEEEEEEEEETSCT-TCCCHH
T ss_pred             hcCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhhh--hhhhhhhhhccccccc-chhhhH
Confidence            345688999987543  23344567799999998875 56777776666555543  56654 7889998644 445554


Q ss_pred             HHHHH
Q psy2518         151 EADLL  155 (208)
Q Consensus       151 ~~~~~  155 (208)
                      ..+.+
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44433

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.51  E-value=0.13  Score=34.62  Aligned_cols=46  Identities=41%  Similarity=0.819  Sum_probs=27.6

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      ...+..+.+.+||++|++++....+.++.+..++...+......+|
T Consensus        46 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf   91 (167)
T d1z08a1          46 NIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSF   91 (167)
T ss_dssp             ESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHH
T ss_pred             ccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHH
Confidence            4567789999999999999988888887777777655543333333

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.45  E-value=0.066  Score=36.53  Aligned_cols=47  Identities=40%  Similarity=0.652  Sum_probs=35.3

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCcc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSF   50 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f   50 (208)
                      +..++..+.+.+||++|+++|....+.++.+..++...+......+|
T Consensus        47 ~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~   93 (173)
T d2fn4a1          47 CSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSF   93 (173)
T ss_dssp             EEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHH
T ss_pred             eccCCeeeeeeccccccccccccccchhhccceeeeeeccccccccc
Confidence            34578889999999999999998888888887777665543333333

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.90  E-value=0.17  Score=34.37  Aligned_cols=39  Identities=44%  Similarity=0.963  Sum_probs=31.4

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...+..+.+.+||++|++++....+.++.+..++.-.+.
T Consensus        50 ~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   88 (177)
T d1x3sa1          50 SVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYD   88 (177)
T ss_dssp             EETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEE
T ss_pred             EEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEE
Confidence            456788899999999999999888887777777665444

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.72  E-value=0.08  Score=35.96  Aligned_cols=47  Identities=38%  Similarity=0.572  Sum_probs=35.1

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ..++..+.+.+||++|++.+....+.++.+..++...+......+|.
T Consensus        46 ~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~   92 (169)
T d1x1ra1          46 EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFE   92 (169)
T ss_dssp             EETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHH
T ss_pred             ccccccccccccccccccccccchhhhhhhccEEEEecccccchhhh
Confidence            45778899999999999999998888887877777655443333443

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=0.096  Score=35.15  Aligned_cols=40  Identities=40%  Similarity=0.752  Sum_probs=31.2

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ...++..+.+.+||++|++.+....+.++.+..++...+.
T Consensus        42 ~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d   81 (164)
T d1yzqa1          42 MYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYD   81 (164)
T ss_dssp             EECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEE
T ss_pred             eccCCCceeeeecccCCcchhccchHHHhhccceEEEeec
Confidence            3457889999999999999998877777777777665444

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.97  E-value=0.087  Score=35.81  Aligned_cols=39  Identities=44%  Similarity=0.922  Sum_probs=30.3

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEE
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFS   43 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~   43 (208)
                      ..++....+.+||++|++++....+.++.+..++...+.
T Consensus        48 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d   86 (174)
T d2bmea1          48 NVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYD   86 (174)
T ss_dssp             EETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEE
T ss_pred             EecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEe
Confidence            345678899999999999998887777777666665444

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.06  E-value=0.1  Score=35.23  Aligned_cols=41  Identities=37%  Similarity=0.746  Sum_probs=32.9

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      ...++..+.+.+||++|++.+....+.++.+..++...+..
T Consensus        45 i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~   85 (170)
T d1ek0a_          45 VTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDV   85 (170)
T ss_dssp             EEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEET
T ss_pred             cccccccccccccccCCchhHHHHHHHHHhccceEEEEEeC
Confidence            35678889999999999999998888877777777665543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.26  E-value=0.16  Score=34.53  Aligned_cols=47  Identities=36%  Similarity=0.781  Sum_probs=34.0

Q ss_pred             ccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           5 ICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         5 ~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      ...+..+.+.+||++|+++|....+..+.+..++...+......+|.
T Consensus        47 ~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~   93 (175)
T d2f9la1          47 QVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYE   93 (175)
T ss_dssp             EETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHH
T ss_pred             EECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccch
Confidence            45678899999999999999988777777777766554433333343

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.41  E-value=0.17  Score=34.59  Aligned_cols=48  Identities=40%  Similarity=0.710  Sum_probs=36.4

Q ss_pred             cccCCceEEEEEeeccCccccceeeeEEEecCceEEEEEEeeecCccc
Q psy2518           4 RICEGEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFSTIDRDSFE   51 (208)
Q Consensus         4 ~~~~~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~~~~~~f~   51 (208)
                      +...+..+.+.+||++|++.|....+.++.+..++...+......+|.
T Consensus        46 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~   93 (183)
T d1mh1a_          46 VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFE   93 (183)
T ss_dssp             EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHH
T ss_pred             eeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHH
Confidence            345778889999999999999999988888888777655543344443

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.34  E-value=0.057  Score=37.23  Aligned_cols=37  Identities=43%  Similarity=0.791  Sum_probs=30.2

Q ss_pred             CceEEEEEeeccCccccceeeeEEEecCceEEEEEEe
Q psy2518           8 GEEVRLMLWDTAGQEEFDAITKAYYRGAQACVITFST   44 (208)
Q Consensus         8 ~~~~~~~~~d~~g~~~~~~~~ki~~vG~s~~gk~~~~   44 (208)
                      +..+.+.+||++|+++|+.+.+.++.+..++...+..
T Consensus        61 ~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~   97 (186)
T d2f7sa1          61 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDL   97 (186)
T ss_dssp             EEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred             cceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEec
Confidence            4467899999999999999888888888877765553