Psyllid ID: psy2829

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MAEPKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAAIKTETMETK
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccEcccccccccccccccccHHHHccHHHHHHHEHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maepkrfhfgrphllplatyakaepqQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIasaglplspgdALRRVFEAVASGLllesgpglldpcekeprdalanmpaqdredvTIHKLLGMeqlklkrgfggsrsanrkrrrdtssgekedggvkkdkkeEEESAAIKTETMETK
Flexible Loop (DISEMBL)
maepkrfhfgrphllPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLlgmeqlklkrgfggsrsanrkrrrdtssgekedggvkkdkkeeeesaaiktetmetk
Low Complexity Region (SEG)
MAEPKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVAsglllesgpgllDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLKLKRGFGGSRSANRKRRRDTSSgekedggvkkdkkeeeeSAAIKTETMETK
Disordered region (IsUnstruct)
*******HFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLES*****************************************************************************************
Disordered Region (DISOPRED)
****KRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAG******DALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLLGME*****************************************************
Disordered Region (DISEMBL)
MAEPKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLKLKRG**********************************************
Disordered Region (DISPRO)
***PKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLK**************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAEPKRFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQAWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVTIHKLLGMEQLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAAIKTETMETK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q562A2	1073	Zinc finger RNA-binding p	yes	N/A	0.789	0.129	0.496	3e-32
Q5REX3	1074	Zinc finger RNA-binding p	yes	N/A	0.789	0.129	0.496	9e-32
Q96KR1	1074	Zinc finger RNA-binding p	yes	N/A	0.789	0.129	0.496	1e-31
O88532	1074	Zinc finger RNA-binding p	yes	N/A	0.789	0.129	0.496	1e-31
Q6PCR6	1074	Zinc finger RNA-binding p	yes	N/A	0.806	0.132	0.496	2e-31
Q6GPM1	1054	Zinc finger RNA-binding p	N/A	N/A	0.806	0.134	0.5	6e-28
Q5U231	1065	Zinc finger RNA-binding p	yes	N/A	0.789	0.130	0.496	2e-27
Q9UPR6	939	Zinc finger RNA-binding p	no	N/A	0.681	0.127	0.464	7e-25
Q6GL57	698	Interleukin enhancer-bind	no	N/A	0.613	0.154	0.448	3e-22
Q6DD04	898	Interleukin enhancer-bind	N/A	N/A	0.613	0.120	0.44	5e-22

>sp|Q562A2|ZFR_RAT Zinc finger RNA-binding protein OS=Rattus norvegicus GN=Zfr PE=1 SV=2

 Score =  137 bits (345), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct: 913  ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 972

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+  PGLLDPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct: 973  CISSGIILKGNPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query: 124  QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
             L ++ + F  +   NRKRRRD+   +  +   KKDKK+
Sbjct: 1033 PLPQMNQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1069

Involved in postimplantation and gastrulation stages of development (By similarity). Binds to DNA and RNA (By similarity). Involved in the nucleocytoplasmic shuttling of STAU2.
Rattus norvegicus (taxid: 10116)

>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1

 Score =  136 bits (342), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct: 914  ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+  PGLLDPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct: 974  CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033

Query: 124  QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
             L ++ + F  +   NRKRRRD+   +  +   KKDKK+
Sbjct: 1034 PLPQMSQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070

Involved in postimplantation and gastrulation stages of development. Involved in the nucleocytoplasmic shuttling of STAU2. Binds to DNA and RNA.

Pongo abelii (taxid: 9601)

>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2

 Score =  135 bits (341), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct: 914  ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+  PGLLDPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct: 974  CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033

Query: 124  QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
             L ++ + F  +   NRKRRRD+   +  +   KKDKK+
Sbjct: 1034 PLPQMSQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070

Involved in postimplantation and gastrulation stages of development. Involved in the nucleocytoplasmic shuttling of STAU2. Binds to DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2

 Score =  135 bits (340), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 102/159 (64%), Gaps = 20/159 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct: 914  ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+  PGLLDPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct: 974  CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033

Query: 124  QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
             L ++ + F  +   NRKRRRD+   +  +   KKDKK+
Sbjct: 1034 PLPQMNQRF--NIHNNRKRRRDSDGVDGFEAEGKKDKKD 1070

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA. Involved in the nucleocytoplasmic shuttling of STAU2.

Mus musculus (taxid: 10090)

>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2

 Score =  134 bits (338), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/161 (49%), Positives = 99/161 (61%), Gaps = 19/161 (11%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV++IR+LR L Q    W+    WA+ELLVEK I+SA  P+SPGDALRRVFE
Sbjct: 913  ARANGLQSCVIVIRILRDLCQRVPTWSAFPSWAMELLVEKAISSASGPMSPGDALRRVFE 972

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG+LL   PGL+DPCEK P D LA M  Q RED+T              IHK+LGM+
Sbjct: 973  CISSGILLSGAPGLIDPCEKNPTDTLAFMEEQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query: 124  QLKLKRGFGGSRSANRKRRRDTSSG-EKEDGGVKKDKKEEE 163
             L         R+  RKRRRD S G +  +   KKDKK+ E
Sbjct: 1033 PLPQMNSRFNVRNT-RKRRRDNSDGADGFEAEGKKDKKDYE 1072

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Danio rerio (taxid: 7955)

>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1

 Score =  123 bits (308), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 80/160 (50%), Positives = 101/160 (63%), Gaps = 18/160 (11%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV++IR+LR L Q    W+    WALELLVEK I+S+  P SPGDALRRVFE
Sbjct: 894  ARANGLQSCVIVIRILRDLCQRVPTWSDFPNWALELLVEKAISSSSGPQSPGDALRRVFE 953

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+ GPGLLDPCEK+P D LA M  Q RED+T              I+K+LGM+
Sbjct: 954  CISSGIILKGGPGLLDPCEKDPYDTLATMNDQQREDITSSAQFALRLLAFRQIYKVLGMD 1013

Query: 124  QLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEE 163
             L          S NRKRRRD+ S +  +   KKDKK+ E
Sbjct: 1014 PLSQTNQRFNVHS-NRKRRRDSDSVDSFEAEGKKDKKDYE 1052

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Xenopus laevis (taxid: 8355)

>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/159 (49%), Positives = 103/159 (64%), Gaps = 20/159 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W+    WALELLVEK I+S+  P SPGDALRRVFE
Sbjct: 905  ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWALELLVEKAISSSSGPQSPGDALRRVFE 964

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             ++SG++L+ GPGLLDPCEK+P D LA M  Q RED+T              I+K+LGM+
Sbjct: 965  CISSGIILKGGPGLLDPCEKDPYDTLATMNDQQREDITSSAQFALRLLAFRQIYKVLGMD 1024

Query: 124  QL-KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKE 161
             L ++ + F  +   NRKRRRD+   +  +   KKDKK+
Sbjct: 1025 PLSQMNQRF--NVHNNRKRRRDSDGVDSFEAEGKKDKKD 1061

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Xenopus tropicalis (taxid: 8364)

>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/140 (46%), Positives = 83/140 (59%), Gaps = 20/140 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   Q CV++IR+LR L +    W  +  WA+ELLVEK ++SA  PL PGDA+RRV E
Sbjct: 780 ARASGLQPCVIVIRVLRDLCRRVPTWGALPAWAMELLVEKAVSSAAGPLGPGDAVRRVLE 839

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA+G LL  GPGL DPCE++  DAL  M  Q+REDVT               HK+LGM+
Sbjct: 840 CVATGTLLTDGPGLQDPCERDQTDALEPMTLQEREDVTASAQHALRMLAFRQTHKVLGMD 899

Query: 124 QLKLKRGFGGSRSANRKRRR 143
            L  +   G      RKR+R
Sbjct: 900 LLPPRHRLGAR---FRKRQR 916

Homo sapiens (taxid: 9606)

>sp|Q6GL57|ILF3_XENTR Interleukin enhancer-binding factor 3 OS=Xenopus tropicalis GN=ilf3 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 17/125 (13%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   +SCV++IR+LR L      W  +  W LELL EK I +A  P+  G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWEPLRGWPLELLCEKAIGTANRPMGAGEALRRVLE 277

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            ++SG+L+  GPGL DPCEKE  DAL ++  Q RED+T              +HK+LGM+
Sbjct: 278 CLSSGILMPDGPGLYDPCEKEASDALEHLERQQREDITQSAQHALRLAAFGQLHKVLGMD 337

Query: 124 QLKLK 128
            L  K
Sbjct: 338 PLPTK 342

A bifunctional protein that binds double-stranded RNA (dsRNA) and RNA-DNA hybrids in a sequence-independent manner, and to a lesser extent double-stranded DNA (dsDNA) in a sequence-dependent manner. Preferentially binds A-form DNA. Has a cytoplasmic role early in development as part of a ribonucleoprotein (mRNP) complex which may regulate mRNA transport and/or translation. Following nuclear localization at the mid-blastula transition, acts as a transcription factor and binds the 5'-CCAAT-3' promoter sequence to regulate transcription of the gata2 gene as a subunit of the CCAAT box transcription factor (CBTF). Its role as an mRNP component negatively regulates its activity as a transcription factor by precluding its nuclear localization.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD04|ILF3B_XENLA Interleukin enhancer-binding factor 3-B OS=Xenopus laevis GN=ilf3-b PE=1 SV=2

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 75/125 (60%), Gaps = 17/125 (13%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   +SCV++IR+LR L      W  +  W LELL EK I +A  P+  G+ALRRV E
Sbjct: 218 ARANGLKSCVIVIRVLRDLCTRVPTWEPLRGWPLELLCEKAIGTANRPMGAGEALRRVLE 277

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            ++SG+L+  GPGL DPCEK+  DAL ++  Q RED+T              +HK+LGM+
Sbjct: 278 CLSSGILMPDGPGLYDPCEKDASDALEHLERQQREDITQSAQHALRLAAFGQLHKVLGMD 337

Query: 124 QLKLK 128
            L  K
Sbjct: 338 PLPTK 342

A bifunctional protein that binds double-stranded RNA (dsRNA) and RNA-DNA hybrids in a sequence-independent manner, and to a lesser extent double-stranded DNA (dsDNA) in a sequence-dependent manner. Preferentially binds A-form DNA. Has a cytoplasmic role early in development as part of a ribonucleoprotein (mRNP) complex which may regulate mRNA transport and/or translation. Following nuclear localization at the mid-blastula transition, acts as a transcription factor and binds the 5'-CCAAT-3' promoter sequence to regulate transcription of the gata2 gene as a subunit of the CCAAT box transcription factor (CBTF). Its role as an mRNP component negatively regulates its activity as a transcription factor by precluding its nuclear localization.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
383863538	997	PREDICTED: zinc finger RNA-binding prote	0.806	0.142	0.543	3e-37
307174679	988	Zinc finger RNA-binding protein [Campono	0.806	0.143	0.537	3e-37
340727984	999	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.823	0.145	0.552	4e-37
350416820	999	PREDICTED: zinc finger RNA-binding prote	0.823	0.145	0.552	5e-37
332023428	982	Zinc finger RNA-binding protein [Acromyr	0.806	0.144	0.537	6e-37
307206692	994	Zinc finger RNA-binding protein [Harpegn	0.806	0.142	0.531	3e-36
345487596	940	PREDICTED: zinc finger RNA-binding prote	0.823	0.154	0.523	1e-35
410921544	1034	PREDICTED: zinc finger RNA-binding prote	0.806	0.137	0.527	2e-35
345487598	734	PREDICTED: zinc finger RNA-binding prote	0.823	0.197	0.523	4e-35
241654527	668	zinc finger protein, putative [Ixodes sc	0.806	0.212	0.526	6e-35

>gi|383863538|ref|XP_003707237.1| PREDICTED: zinc finger RNA-binding protein-like [Megachile rotundata]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 108/173 (62%), Gaps = 31/173 (17%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 832 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGGPLSPGEALRRLLE 891

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEKEP DA+ NM AQ RED+T              IHK+LGME
Sbjct: 892 CVAGGILLPGSPGLSDPCEKEPVDAIGNMTAQQREDITASAQHALRLVAFRQIHKVLGME 951

Query: 124 QL---KLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   K K  F       RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 952 QLPPPKYKGRFA------RKRRRDNSNGEGTDSEASKKDKKAEE----IKMET 994

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174679|gb|EFN65062.1| Zinc finger RNA-binding protein [Camponotus floridanus]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 109/173 (63%), Gaps = 31/173 (17%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 823 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGGPLSPGEALRRLLE 882

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL + PGL DPCEKEP DA+ NM +Q RED+T              IHK+LGME
Sbjct: 883 CVAGGILLPNSPGLSDPCEKEPVDAIGNMTSQQREDITASAQHALRLVAFRQIHKVLGME 942

Query: 124 QL---KLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   K K  F       RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 943 QLPPPKFKGRFA------RKRRRDNSNGEGTDNEASKKDKKAEE----IKMET 985

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727984|ref|XP_003402313.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger RNA-binding protein-like [Bombus terrestris]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 25/170 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 834 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGGPLSPGEALRRLLE 893

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEKEP DA+ NM AQ RED+T              IHK+LGME
Sbjct: 894 CVAGGILLPGSPGLSDPCEKEPVDAIGNMTAQQREDITASAQHALRLVAFRQIHKVLGME 953

Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   +  G  R A RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 954 QLPPPKYKG--RYA-RKRRRDNSNGEGTDSEASKKDKKAEE----IKMET 996

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416820|ref|XP_003491119.1| PREDICTED: zinc finger RNA-binding protein-like [Bombus impatiens]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/170 (55%), Positives = 109/170 (64%), Gaps = 25/170 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 834 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGGPLSPGEALRRLLE 893

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEKEP DA+ NM AQ RED+T              IHK+LGME
Sbjct: 894 CVAGGILLPGSPGLSDPCEKEPVDAIGNMTAQQREDITASAQHALRLVAFRQIHKVLGME 953

Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   +  G  R A RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 954 QLPPPKYKG--RYA-RKRRRDNSNGEGTDSEASKKDKKAEE----IKMET 996

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023428|gb|EGI63671.1| Zinc finger RNA-binding protein [Acromyrmex echinatior]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/173 (53%), Positives = 108/173 (62%), Gaps = 31/173 (17%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 817 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGGPLSPGEALRRLLE 876

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEKEP DA+ NM +Q RED+T              IHK+LGME
Sbjct: 877 CVAGGILLPGSPGLSDPCEKEPVDAIGNMTSQQREDITSSAQHALRLVAFRQIHKVLGME 936

Query: 124 QL---KLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   K K  F       RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 937 QLPPPKFKGRFA------RKRRRDNSNGEGTDSEASKKDKKAEE----IKMET 979

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206692|gb|EFN84647.1| Zinc finger RNA-binding protein [Harpegnathos saltator]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/173 (53%), Positives = 107/173 (61%), Gaps = 31/173 (17%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKVI++AG PLSPG+ALRR+ E
Sbjct: 829 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVISTAGCPLSPGEALRRLLE 888

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEKE  DA+ NM +Q RED+T              IHK+LGME
Sbjct: 889 CVAGGILLPGSPGLSDPCEKEAVDAIGNMTSQQREDITASAQHALRLVAFRQIHKVLGME 948

Query: 124 QL---KLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   K K  F       RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 949 QLPPPKFKGRFA------RKRRRDNSNGEGTDSEASKKDKKAEE----IKMET 991

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345487596|ref|XP_001600350.2| PREDICTED: zinc finger RNA-binding protein-like isoform 1 [Nasonia vitripennis]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 25/170 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKV+++AG+PLSPG ALRR+ E
Sbjct: 775 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVLSTAGVPLSPGAALRRLLE 834

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEK+P DA+ +M AQ RED+T              IHK+LGME
Sbjct: 835 CVAGGILLPGSPGLSDPCEKDPVDAIGSMTAQQREDITASAQHALRLVAFRQIHKVLGME 894

Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   +  G      RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 895 QLPPPKHKG---PFTRKRRRDNSNGEGTDSEASKKDKKTEE----IKMET 937

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|410921544|ref|XP_003974243.1| PREDICTED: zinc finger RNA-binding protein-like [Takifugu rubripes]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 109/163 (66%), Gaps = 21/163 (12%)

Query: 21   AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
            A+A   QSCV+IIR+LR L Q    W  ++ WA+ELLVEKVI+SA  PLSPG+ALRRV E
Sbjct: 876  ARANGLQSCVIIIRVLRDLCQRVSTWTKMSGWAMELLVEKVISSAAGPLSPGEALRRVLE 935

Query: 78   AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
             +++G+LL  GPGL+DPCEKEP DAL NM  QDRE++T              IHK+LGME
Sbjct: 936  CISTGILLSDGPGLMDPCEKEPTDALDNMVPQDREEITVDAQQALRQLAFRQIHKILGME 995

Query: 124  QLKLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESA 166
             L   +    + + NRKRR D S+  + +G  KKDKKEE +SA
Sbjct: 996  PLPTSK----ASARNRKRRLDGSNVGEGEGEGKKDKKEEADSA 1034

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345487598|ref|XP_003425725.1| PREDICTED: zinc finger RNA-binding protein-like isoform 2 [Nasonia vitripennis]

 Score =  152 bits (385), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/170 (52%), Positives = 107/170 (62%), Gaps = 25/170 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR++R L      W  +NPWALELL EKV+++AG+PLSPG ALRR+ E
Sbjct: 569 ARATSLQSCVMVIRIMRDLCNRVPTWGPLNPWALELLTEKVLSTAGVPLSPGAALRRLLE 628

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            VA G+LL   PGL DPCEK+P DA+ +M AQ RED+T              IHK+LGME
Sbjct: 629 CVAGGILLPGSPGLSDPCEKDPVDAIGSMTAQQREDITASAQHALRLVAFRQIHKVLGME 688

Query: 124 QLKLKRGFGGSRSANRKRRRDTSSGEKEDG-GVKKDKKEEEESAAIKTET 172
           QL   +  G      RKRRRD S+GE  D    KKDKK EE    IK ET
Sbjct: 689 QLPPPKHKG---PFTRKRRRDNSNGEGTDSEASKKDKKTEE----IKMET 731

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241654527|ref|XP_002410533.1| zinc finger protein, putative [Ixodes scapularis] gi|215501691|gb|EEC11185.1| zinc finger protein, putative [Ixodes scapularis]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/167 (52%), Positives = 105/167 (62%), Gaps = 25/167 (14%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCVM+IR+LR L Q    W+ +N WALELLVEKV++SAG P+ PGDALRRV E
Sbjct: 501 ARASSLQSCVMVIRILRDLCQRVPTWSTLNAWALELLVEKVLSSAGQPMPPGDALRRVLE 560

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
           AVA G+LL   PGL+DPCE+EP DALA +  Q RED+T              IHK+LGM+
Sbjct: 561 AVAGGILLPGDPGLVDPCEREPVDALAGLTDQAREDITASAQHALRLVAFRQIHKVLGMD 620

Query: 124 QL---KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAA 167
            L   K  R        NRKRRRD  + E E    KKDKKEE+   A
Sbjct: 621 PLPPPKFARNL-----MNRKRRRDGEANEAEGADGKKDKKEEQAKVA 662

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
ZFIN|ZDB-GENE-030131-378	1074	zfr "zinc finger RNA binding p	0.710	0.116	0.461	1.4e-22
ZFIN|ZDB-GENE-070705-184	1011	zfr2 "zinc finger RNA binding	0.715	0.124	0.474	2e-22
UNIPROTKB|F1N0Y9	1030	ZFR "Uncharacterized protein"	0.698	0.119	0.468	9.6e-22
UNIPROTKB|E2R6T6	1073	ZFR "Uncharacterized protein"	0.698	0.114	0.468	1e-21
UNIPROTKB|Q96KR1	1074	ZFR "Zinc finger RNA-binding p	0.698	0.114	0.468	1e-21
MGI|MGI:1341890	1074	Zfr "zinc finger RNA binding p	0.698	0.114	0.468	1e-21
RGD|1311890	1073	Zfr "zinc finger RNA binding p	0.698	0.114	0.468	1.3e-21
UNIPROTKB|Q562A2	1073	Zfr "Zinc finger RNA-binding p	0.698	0.114	0.468	1.3e-21
UNIPROTKB|F1N855	1025	LOC427010 "Uncharacterized pro	0.698	0.12	0.468	4.2e-21
UNIPROTKB|F1NLI6	1075	LOC427010 "Uncharacterized pro	0.698	0.114	0.468	7.3e-21

ZFIN|ZDB-GENE-030131-378 zfr "zinc finger RNA binding protein" [Danio rerio (taxid:7955)]

 Score = 268 (99.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 66/143 (46%), Positives = 80/143 (55%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV++IR+LR L Q    W+    WA+ELLVEK I+SA  P+SPGDALRRVFE
Sbjct:   913 ARANGLQSCVIVIRILRDLCQRVPTWSAFPSWAMELLVEKAISSASGPMSPGDALRRVFE 972

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK P D LA M  Q RED+T              IHK+LGM+
Sbjct:   973 CISSGILLSGAPGLIDPCEKNPTDTLAFMEEQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query:   124 QLKLKRGFGGSRSANRKRRRDTS 146
              L         R+  RKRRRD S
Sbjct:  1033 PLPQMNSRFNVRNT-RKRRRDNS 1054

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

ZFIN|ZDB-GENE-070705-184 zfr2 "zinc finger RNA binding protein 2" [Danio rerio (taxid:7955)]

 Score = 256 (95.2 bits), Expect = 2.0e-22, Sum P(2) = 2.0e-22
 Identities = 66/139 (47%), Positives = 80/139 (57%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W  +  WA+EL+VEK I+SA  PLSPG+ALRRV E
Sbjct:   853 ARANGLQSCVIIIRVLRDLCQRIPTWGKMPNWAMELIVEKAISSASGPLSPGEALRRVLE 912

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVTIH-----KLLGMEQLKLKRGFG 132
              +A            DPCEK   DAL  M  Q REDVT +     +LL   Q+    G G
Sbjct:   913 CIATGILLPDGPGLLDPCEKGQTDALGTMSKQAREDVTANAQHALRLLAFRQIHKVLGMG 972

Query:   133 G---SRSA--NRKRRRDTS 146
                 S++A  NRKRRRD S
Sbjct:   973 SLPVSKAAARNRKRRRDGS 991

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1N0Y9 ZFR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 266 (98.7 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   870 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 929

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   930 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 989

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:   990 PLPQMNQRFNIHN--NRKRRRDS 1010

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R6T6 ZFR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   913 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 972

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   973 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1033 PLPQMSQRFNIHN--NRKRRRDS 1053

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q96KR1 ZFR "Zinc finger RNA-binding protein" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   914 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   974 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1034 PLPQMSQRFNIHN--NRKRRRDS 1054

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1341890 Zfr "zinc finger RNA binding protein" [Mus musculus (taxid:10090)]

 Score = 266 (98.7 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   914 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 973

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   974 CISSGIILKGSPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1033

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1034 PLPQMNQRFNIHN--NRKRRRDS 1054

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1311890 Zfr "zinc finger RNA binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   913 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 972

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   973 CISSGIILKGNPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1033 PLPQMNQRFNIHN--NRKRRRDS 1053

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q562A2 Zfr "Zinc finger RNA-binding protein" [Rattus norvegicus (taxid:10116)]

 Score = 265 (98.3 bits), Expect = 1.3e-21, P = 1.3e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   913 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSASSPQSPGDALRRVFE 972

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   973 CISSGIILKGNPGLLDPCEKDPFDTLATMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1032

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1033 PLPQMNQRFNIHN--NRKRRRDS 1053

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N855 LOC427010 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 260 (96.6 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   865 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSATGPQSPGDALRRVFE 924

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   925 CISSGIILKGGPGILDPCEKDPFDTLAVMTDQQREDITSSAQFALKLLAFRQIHKVLGMD 984

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:   985 PLPQMNQRFNTHN--NRKRRRDS 1005

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NLI6 LOC427010 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 258 (95.9 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 67/143 (46%), Positives = 83/143 (58%)

Query:    21 AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
             A+A   QSCV+IIR+LR L Q    W+    WA+ELLVEK I+SA  P SPGDALRRVFE
Sbjct:   915 ARANGLQSCVIIIRILRDLCQRVPTWSDFPSWAMELLVEKAISSATGPQSPGDALRRVFE 974

Query:    78 AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
              ++            DPCEK+P D LA M  Q RED+T              IHK+LGM+
Sbjct:   975 CISSGIILKGGPGLLDPCEKDPFDTLAVMTDQQREDITSSAQFALRLLAFRQIHKVLGMD 1034

Query:   124 QL-KLKRGFGGSRSANRKRRRDT 145
              L ++ + F      NRKRRRD+
Sbjct:  1035 PLPQMNQRFNIHN--NRKRRRDS 1055

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	176
smart00572	246	smart00572, DZF, domain in DSRM or ZnF_C2H2 domain	1e-35
pfam07528	248	pfam07528, DZF, DZF domain	5e-18

>gnl|CDD|128842 smart00572, DZF, domain in DSRM or ZnF_C2H2 domain containing proteins

 Score =  124 bits (313), Expect = 1e-35
 Identities = 62/122 (50%), Positives = 74/122 (60%), Gaps = 17/122 (13%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   QSCV++IR+LR L      W  ++ W LELLVEK I SA  PL  GDA RRVFE
Sbjct: 122 ARASGLQSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGLGDAFRRVFE 181

Query: 78  AVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            +ASG+LL   PGL DPCEK+  DAL  +  Q REDVT              IHK+LGM+
Sbjct: 182 CLASGILLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFGQIHKILGMD 241

Query: 124 QL 125
            L
Sbjct: 242 PL 243

Length = 246

>gnl|CDD|219454 pfam07528, DZF, DZF domain

 Score = 78.0 bits (192), Expect = 5e-18
 Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 19/124 (15%)

Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRV 75
             A   +S  ++IR+L+ L +    +  ++ W L+LL  K I +  +   L  G+A RRV
Sbjct: 122 ENAHHLKSIKVLIRVLKDLCRRFDTFGPLSGWPLDLLAHKAIMNNPSRQALPAGEAFRRV 181

Query: 76  FEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLG 121
           FE +ASG+ L    G+ DPCEK       ++  Q ++D                   +LG
Sbjct: 182 FELLASGIFLPGSAGITDPCEKGHTRVHTHLTLQQQDDCCMTAQTLLRVLAHGGYKHILG 241

Query: 122 MEQL 125
           M+  
Sbjct: 242 MDGN 245

The function of this domain is unknown. It is often found associated with pfam00098 or pfam00035. This domain has been predicted to belong to the nucleotidyltransferase superfamily. Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PF07528	248	DZF: DZF domain; InterPro: IPR006561 This domain i	100.0
smart00572	246	DZF domain in DSRM or ZnF_C2H2 domain containing p	100.0
KOG3793|consensus	362		100.0
KOG3792|consensus	816		100.0
KOG3792|consensus	816		99.97
PF10421	190	OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain	92.61
PF03813	972	Nrap: Nrap protein; InterPro: IPR005554 Members of	82.87

>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO)

Probab=100.00  E-value=4.8e-54  Score=366.69  Aligned_cols=119  Identities=55%  Similarity=0.884  Sum_probs=115.8

Q ss_pred             ccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHhhc
Q psy2829           8 HFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIA--SAGLPLSPGDALRRVFEAVASG   82 (176)
Q Consensus         8 ~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~--sa~~pLs~g~AfRRvlE~lAsG   82 (176)
                      ..++||+  +|||+||+++|||++|||||||||+   +|+||++|+|||||||||+  ++++||+||+||||||||||||
T Consensus       111 LaalRha--kWFq~~a~~l~s~~~viRIlrDl~~R~p~w~~L~~W~leLL~~~~i~~~~~~~~l~~g~a~RRvle~lasG  188 (248)
T PF07528_consen  111 LAALRHA--KWFQARANGLQSCVIVIRILRDLRQRVPTWQPLSSWALELLVEKAISNNSSRQPLSPGDAFRRVLECLASG  188 (248)
T ss_pred             HHHHHHh--HHHHHHhccCCCcceehhhHHHHHHhCCCCCCCChhHHHHHHHHHeeeCCCCCCCChHHHHHHHHHHHhCc
Confidence            5789999  9999999999999999999999999   9999999999999999999  6899999999999999999999


Q ss_pred             cccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829          83 LLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK  128 (176)
Q Consensus        83 ilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~  128 (176)
                      ||||||+||.||||++++|+++.||.|||||||              ||||||||++|++
T Consensus       189 illp~~~gl~DPcE~~~~~~~~~lt~qq~e~it~sAQ~~LRllafgq~~kvLg~d~~~s~  248 (248)
T PF07528_consen  189 ILLPGSPGLRDPCEKDPVDVLDTLTLQQREDITSSAQTALRLLAFGQIHKVLGMDPLPSK  248 (248)
T ss_pred             eecCCCCCCcCCCCCCCceeeccCCHHHHHHHHHHHHHHHHHHHhcCcceeccCCCCCCC
Confidence            999999999999999999999999999999999              9999999999864

This domain is found exclusively in the metazoa.

>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins

Probab=100.00  E-value=7.4e-49  Score=336.23  Aligned_cols=120  Identities=53%  Similarity=0.810  Sum_probs=116.9

Q ss_pred             cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcc
Q psy2829           7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGL   83 (176)
Q Consensus         7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGi   83 (176)
                      ...++||+  +|||+||+++|+|++|||||||+|+   +|+||++|+||||+||+++++++|+++|+|||||||+||+|+
T Consensus       110 aLAalRha--kWFq~~a~~l~s~~iviRilKd~~~R~~~~~pL~~w~iELl~~~~i~~~~~~l~~~~a~RR~fe~lAsG~  187 (246)
T smart00572      110 ALASLRHA--KWFQARASGLQSCVIVIRVLRDLCNRVPTWQPLSGWPLELLVEKAIGSARQPLGLGDAFRRVFECLASGI  187 (246)
T ss_pred             HHHHHHHh--HHHHHhccCCcchhhHHHHHHHHHHhcccccccccccHHHHHHHHhccCCCCCCHHHHHHHHHHHHHhcc
Confidence            35789999  9999999999999999999999999   999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829          84 LLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK  128 (176)
Q Consensus        84 lLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~  128 (176)
                      |||||+||.||||+++.||++.||+||||+||              ||||||||++|++
T Consensus       188 l~p~~~gI~DPce~~~~nv~~~lT~qqrd~It~sAQ~alRl~Afgq~~kvLGm~~l~~~  246 (246)
T smart00572      188 LLPGSPGLTDPCEKDNTDALTALTLQQREDVTASAQTALRLLAFGQIHKILGMDPLPSM  246 (246)
T ss_pred             CcCCCCCCcCCCCCCcccHHHhcCHHHHHHHHHHHHHHHHHHHhcchheeeccCCCCCC
Confidence            99999999999999999999999999999999              9999999999864

>KOG3793|consensus

Probab=100.00  E-value=4.4e-37  Score=269.98  Aligned_cols=119  Identities=27%  Similarity=0.399  Sum_probs=114.4

Q ss_pred             cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhh
Q psy2829           7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRVFEAVAS   81 (176)
Q Consensus         7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~s--a~~pLs~g~AfRRvlE~lAs   81 (176)
                      -+|++||+  +||+++|. +|+.+++||||||++.   +|+||+.|+++||+|+|++|  ++|||.+|.|||||||+||+
T Consensus       188 ~l~a~RH~--~WFee~A~-~s~~~~lir~LKDlr~r~~~F~PLs~W~ldll~h~avmNnp~RQ~l~ln~Afrr~~qilaA  264 (362)
T KOG3793|consen  188 ALAAIRHA--RWFEENAS-QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA  264 (362)
T ss_pred             HHHHHhhh--hhhhhhhh-HHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHcCCccccchhhHHHHHHHHHHHh
Confidence            36899999  99999997 7889999999999998   99999999999999999999  59999999999999999999


Q ss_pred             ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829          82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK  128 (176)
Q Consensus        82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~  128 (176)
                      |+|||||+||.||||+++.++|+.||+.|+|.+|              |+.|||+++..+.
T Consensus       265 G~FlPgS~gitDP~es~~~rvh~~~tLpq~D~~c~~aqtL~RilA~ggyraILGl~g~~~~  325 (362)
T KOG3793|consen  265 GLFLPGSVGITDPCESGNFRVHTVMTLPQQDMVCYTAQTLVRILAHGGYRAILGLEGDASY  325 (362)
T ss_pred             cccCCCCCCcCCCCCCCceeecccccccccccchhHHHHHHHHHHcCCcHHHhCCCCchHH
Confidence            9999999999999999999999999999999998              9999999998766

>KOG3792|consensus

Probab=100.00  E-value=9.3e-35  Score=276.46  Aligned_cols=135  Identities=49%  Similarity=0.757  Sum_probs=123.6

Q ss_pred             cccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcc
Q psy2829           7 FHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGL   83 (176)
Q Consensus         7 ~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGi   83 (176)
                      ---++||+  +|||++|.+|+||++|||+|||||+   +|+.|.+|.||||++++|+|+..||++++||||++|++|+| 
T Consensus       647 alA~lr~~--~wf~a~at~l~sc~~vir~lrdl~~~~~~~g~l~~~~~el~ve~~i~sap~pl~~~d~~rri~e~~asg-  723 (816)
T KOG3792|consen  647 ALASLRHA--KWFQARATGLQSCVSVIRLLRDLCNRVPEWGCLPDWKMELLVEKIISSAPMPLGPGDAFRRIVEALASG-  723 (816)
T ss_pred             hhhhhccc--cccccccccccceeeehHhHHhHhhcCCCcCccchhhhhhhhhcccccCCCCCCchhhhhhhHHhhccc-
Confidence            34578999  9999999999999999999999999   99999999999999999999999999999999999999999 


Q ss_pred             ccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCccccccCCCCCcccccccCCCCCC
Q psy2829          84 LLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLKRGFGGSRSANRKRRRDTSSG  148 (176)
Q Consensus        84 lLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~~~~~~~~~~~~kr~r~~~~~  148 (176)
                       |-.+|||.||||.+++|++..||+|||||+|              +|+|||||.+|...+|.   +..|||+|.++..
T Consensus       724 -~~y~~~l~dpce~~qt~~l~~~t~q~re~~t~~aQ~~~ry~af~q~~~vlG~d~l~~~~r~~---~~~r~~r~~~~~~  798 (816)
T KOG3792|consen  724 -LLYGPGLSDPCETDQTDALDALTDQEREDLTASAQNFLRYIAFRQIHKVLGMDRLPDTPRDA---PMLRKRRRSNGNA  798 (816)
T ss_pred             -cccCcccCCccccCCcchhcccChhhhhhhhHHHHHHHHHHHhhccccccCcccCCcccccc---hhhcccccCCCcc
Confidence             5578999999999999999999999999999              99999999999886653   4567777665543

>KOG3792|consensus

Probab=99.97  E-value=3.9e-31  Score=251.83  Aligned_cols=146  Identities=30%  Similarity=0.356  Sum_probs=128.6

Q ss_pred             ccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhccccC
Q psy2829          10 GRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFEAVASGLLLE   86 (176)
Q Consensus        10 ~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa~~pLs~g~AfRRvlE~lAsGilLp   86 (176)
                      +++|.  .|||++|+++|+|+++||++||||+   +|+++.+|++||+|++||.++..|...|+|+|||+||+++||.++
T Consensus       192 qL~~~--kw~k~~a~G~qs~re~lr~~r~l~krvpt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~~k  269 (816)
T KOG3792|consen  192 QLHYC--KWCKISAAGPQTYREHLRGQKHLKKEVPTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLHKK  269 (816)
T ss_pred             Hhhhh--HHHHHhccccHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhhhccccc
Confidence            57888  9999999999999999999999999   999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc-ccCCCCCcccccccCCCCCCCCC
Q psy2829          87 SGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK-RGFGGSRSANRKRRRDTSSGEKE  151 (176)
Q Consensus        87 gs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~-~~~~~~~~~~~kr~r~~~~~~~~  151 (176)
                      +|+||.||||++.+|++..|+.||+|+||              +|+|||||++|+. +.+..--....+.+|.+++..++
T Consensus       270 ~G~gi~d~cek~~tds~~~le~qqrEdit~Saq~A~Rl~aagq~~kvl~mdplp~~~p~~~~a~~~~~~~kpvgeE~v~E  349 (816)
T KOG3792|consen  270 LGKGIPDPCEKDATDSLGQLEAQQREDITASAQHALRLAAAGQLTKVLGMDPLPSGKPAQPNAMAAASEVKPVGEEYVEE  349 (816)
T ss_pred             CCCCCCCccccccccCccchhhcccCccchhhhhhhcchhcccchhhhccCcCccccccccccccccccccCCccccccc
Confidence            99999999999999999999999999998              9999999999966 44431013456666677665554


Q ss_pred             Cccccc
Q psy2829         152 DGGVKK  157 (176)
Q Consensus       152 ~~~~kk  157 (176)
                      +.+.++
T Consensus       350 ekd~~g  355 (816)
T KOG3792|consen  350 EKDPEG  355 (816)
T ss_pred             ccCccc
Confidence            443333

>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat

Probab=92.61  E-value=0.33  Score=41.19  Aligned_cols=54  Identities=26%  Similarity=0.337  Sum_probs=40.6

Q ss_pred             CchhhHHHHHHHHh--hcc-----CC-ChhHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhh
Q psy2829          28 SCVMIIRLLRHLGQ--AWN-----LI-NPWALELLVEKVIASA--GLPLSPGDALRRVFEAVAS   81 (176)
Q Consensus        28 sc~ivIRILRDlr~--~w~-----~L-s~W~lELLv~kai~sa--~~pLs~g~AfRRvlE~lAs   81 (176)
                      ..+-+||+.|.-.+  .|.     ++ +.++||||+.||-...  ....+..++||=|||+|..
T Consensus        43 klK~LIrLVKhWy~~~~~~~~~~~~lPpsYaLELLtIyAWE~g~~~~~F~~a~gfrtVLeLi~~  106 (190)
T PF10421_consen   43 KLKNLIRLVKHWYQQCKKKKCGGGSLPPSYALELLTIYAWEQGCGAEDFSTAEGFRTVLELIQK  106 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHCC--HTT-S--HHHHHHHHHHHHHHHT-SSS--HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhcCCCcCcchhhhHhHHHHHHhC
Confidence            35679999999888  333     44 4699999999999884  3447889999999999764

It carries the region of enzymic activity between residues 320 and 344 at the extreme C-terminal end []. Oligoadenylate synthetases are antiviral enzymes that counteract viral attack by degrading viral RNA. The enzyme uses ATP in 2'-specific nucleotidyl transfer reactions to synthesise 2'.5'-oligoadenylates, which activate latent ribonuclease, resulting in degradation of viral RNA and inhibition of virus replication []. This domain is often associated with IPR002934 from INTERPRO. ; PDB: 1PX5_B.

>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human

Probab=82.87  E-value=2.4  Score=43.10  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=75.8

Q ss_pred             ccccccCCccchHHHhhcCCCCCchhhHHHHHHHHh---hccCCChhHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHH
Q psy2829           6 RFHFGRPHLLPLATYAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASA---GLPLSPGDALRRVFEAV   79 (176)
Q Consensus         6 ~~~f~~~h~~~~WFqara~~l~sc~ivIRILRDlr~---~w~~Ls~W~lELLv~kai~sa---~~pLs~g~AfRRvlE~l   79 (176)
                      +|...-.|.  .+.+.-++..++.-..||+.|---.   -=..+++=++||||-++..+.   ..|-|+-.+|=|+|++|
T Consensus       664 ~~~~~p~h~--~~i~~l~~~~p~fs~tvRL~KrW~~shlLs~~i~~E~vELlva~vfl~~~p~~~P~S~~~GFlRfL~lL  741 (972)
T PF03813_consen  664 RFIHLPKHT--SAIHGLHTRFPSFSPTVRLAKRWLSSHLLSGHISEEAVELLVASVFLSPAPWSPPSSPQTGFLRFLHLL  741 (972)
T ss_pred             HHHhhHHHH--HHHHHHHhhCCchhHHHHHHHHHHHhccCcccCCHHHHHHHHHHHhcCCCCCCCCCCHhHHHHHHHHHH
Confidence            455666688  8999999999999999999997655   225678889999999999874   45799999999999999


Q ss_pred             hhccccCCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829          80 ASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT  115 (176)
Q Consensus        80 AsGilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT  115 (176)
                      |+==.- ..|=|.|+        ...|+.+++.+|.
T Consensus       742 s~~dW~-~~PLiVd~--------~~~l~~~~~~~i~  768 (972)
T PF03813_consen  742 STWDWR-EEPLIVDF--------NNELTEEDRAEIE  768 (972)
T ss_pred             HhCCCC-cCCEEEEC--------CCCCCHHHHHHHH
Confidence            984222 22334443        3578888887775

In the mouse, Nrap is ubiquitously expressed and is specifically localized in the nucleolus []. Nrap is a large nucleolar protein (of more than 1000 amino acids). Nrap appears to be associated with ribosome biogenesis by interacting with pre-rRNA primary transcript [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	176
4at8_B	383	Crystal Structure Of The Nf90-Nf45 Dimerisation Dom		8e-17

>pdb|4AT8|B Chain B, Crystal Structure Of The Nf90-Nf45 Dimerisation Domain Complex With Atp Length = 383

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 66/125 (52%), Gaps = 17/125 (13%)
Query: 21  AKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVIASAGLPLSPGDALRRVFE 77
           A+A   +SCV++IR+LR L      W  +  W LELL EK I +A  P+  G+ALRRV E
Sbjct: 220 ARANGLKSCVIVIRVLRDLCTRVPTWGPLRGWPLELLCEKSIGTANRPMGAGEALRRVLE 279
Query: 78  AVAXXXXXXXXXXXXDPCEKEPRDALANMPAQDREDVT--------------IHKLLGME 123
            +A            DPCEKE  DA+ ++  Q RED+T              +HK+LGM+
Sbjct: 280 CLASGIVMPDGSGIYDPCEKEATDAIGHLDRQQREDITQSAQHALRLAAFGQLHKVLGMD 339
Query: 124 QLKLK 128
            L  K
Sbjct: 340 PLPSK 344
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
4at7_B	383	NF90, interleukin enhancer-binding factor 3; trans	3e-35
4at7_A	364	Interleukin enhancer-binding factor 2; transcripti	2e-31

>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Length = 364

 Score =  115 bits (288), Expect = 2e-31
 Identities = 41/181 (22%), Positives = 72/181 (39%), Gaps = 26/181 (14%)

Query: 20  YAKAEPQQSCVMIIRLLRHLGQ---AWNLINPWALELLVEKVI--ASAGLPLSPGDALRR 74
           + +   Q +  ++IRLL+ L      +  + PW L+LL    +       PL+   A RR
Sbjct: 185 FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRR 244

Query: 75  VFEAVASGLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLL 120
             + +A+GL L    G+ DPCE         M  + ++ V                 K+L
Sbjct: 245 CLQILAAGLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKIL 304

Query: 121 GMEQL-----KLKRGFGGSRSANRKRRRDTSSGEKEDGGVKKDKKEEEESAAIKTETMET 175
           G E            + G      ++  +    +KE  G ++++  EE     + E+MET
Sbjct: 305 GQEGDASYLASEISTWDGVIVTPSEKAYEKPPEKKE--GEEEEENTEEPPQGEEEESMET 362

Query: 176 K 176
           +
Sbjct: 363 Q 363

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4at7_B	383	NF90, interleukin enhancer-binding factor 3; trans	100.0
4at7_A	364	Interleukin enhancer-binding factor 2; transcripti	100.0
1px5_A	349	2'-5'-oligoadenylate synthetase 1; 5-stranded anti	99.11

>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A*

Probab=100.00  E-value=1.9e-46  Score=334.23  Aligned_cols=117  Identities=30%  Similarity=0.436  Sum_probs=111.1

Q ss_pred             ccccCCccchHHHhhcCCCCCch-hhHHHHHHHHh---hccCCChhHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhh
Q psy2829           8 HFGRPHLLPLATYAKAEPQQSCV-MIIRLLRHLGQ---AWNLINPWALELLVEKVIAS--AGLPLSPGDALRRVFEAVAS   81 (176)
Q Consensus         8 ~f~~~h~~~~WFqara~~l~sc~-ivIRILRDlr~---~w~~Ls~W~lELLv~kai~s--a~~pLs~g~AfRRvlE~lAs   81 (176)
                      ..++||+  +|||+||+  +||+ ++||||||||+   +|++|++|+||||+|||+++  +++||++|+|||||||||||
T Consensus       176 LaalRhA--kWfq~na~--~s~v~~lIRIlkDlc~R~~~w~pL~~waLELL~~~Ai~s~~~~~~l~~~~afRRVLElLAs  251 (364)
T 4at7_A          176 LAAIRHA--RWFEENAS--QSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAA  251 (364)
T ss_dssp             HHHHHHH--HHHHHHCC--CHHHHHHHHHHHHHHHHCGGGTTCCHHHHHHHHHHHHHSSTTSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHhhhh--HHHHhhcc--ccccceeehhhHHHHHhcCCcCCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHh
Confidence            5689999  99999997  4555 79999999999   99999999999999999999  68899999999999999999


Q ss_pred             ccccCCCCCCCCCCcCCCcccccCCChhhhhhhh--------------hHhhhCCCCcccc
Q psy2829          82 GLLLESGPGLLDPCEKEPRDALANMPAQDREDVT--------------IHKLLGMEQLKLK  128 (176)
Q Consensus        82 GilLpgs~GL~DPCEk~~~dv~~~Lt~QQredIT--------------ihkVLGme~lp~~  128 (176)
                      |||||||+||.||||++++|||+.||+||||+||              ||||||||+++++
T Consensus       252 Gillp~~~Gi~DPCE~~~~~v~~~lt~qq~e~it~sAQ~~LRllafgq~~kVLG~e~~~s~  312 (364)
T 4at7_A          252 GLFLPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASY  312 (364)
T ss_dssp             TTTSTTBCCCBCTTSSSCCBGGGGSCHHHHHHHHHHHHHHHHHHHTTCHHHHHTSSSCCGG
T ss_pred             CcccCCCCCCcCCCCCCCcchhccCCHHHHHHHHHHHHHHHHHHHhcCcceecccCCCcch
Confidence            9999999999999999999999999999999999              9999999999873

>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6

Probab=99.11  E-value=6.7e-11  Score=101.78  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             hHHHhhcCCCCCchhhHHHHHHHHh--h----ccCCChhHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhhcc-----
Q psy2829          17 LATYAKAEPQQSCVMIIRLLRHLGQ--A----WNLINPWALELLVEKVIASA--GLPLSPGDALRRVFEAVASGL-----   83 (176)
Q Consensus        17 ~WFqara~~l~sc~ivIRILRDlr~--~----w~~Ls~W~lELLv~kai~sa--~~pLs~g~AfRRvlE~lAsGi-----   83 (176)
                      .|+.++   ....+-+||+||+.++  .    -..+++|++|||+.++..+.  .+..+..++||+|||+|+.+.     
T Consensus       195 ~~v~~~---~~~~k~lIRLlK~W~~~~~~~~~~~~~ssy~lELL~~~a~e~~~~~~~~~~~~~f~~vle~l~~~~~~~i~  271 (349)
T 1px5_A          195 DFLRNR---PTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELVLKHQKLCIF  271 (349)
T ss_dssp             HHHHSS---CHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHTGGGCEEC
T ss_pred             HHHHhC---cHHHHHHHHHHHHHHHHhhhcccCCCCChHHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCcccee
Confidence            666544   2456789999999998  2    46899999999999999884  456788999999999999983     


Q ss_pred             --------------cc-----CCCCCCCCCCcCCCcccccCCChhhhhhhh
Q psy2829          84 --------------LL-----ESGPGLLDPCEKEPRDALANMPAQDREDVT  115 (176)
Q Consensus        84 --------------lL-----pgs~GL~DPCEk~~~dv~~~Lt~QQredIT  115 (176)
                                    ||     .++|+|.|||++.+ +|++. |.++++.++
T Consensus       272 w~~~y~~~~~~~~~fl~~~l~~~~p~I~DP~dp~~-NVa~~-~~~~~~~~~  320 (349)
T 1px5_A          272 WEAYYDFTNPVVGRCMLQQLKKPRPVILDPADPTG-NVGGG-DTHSWQRLA  320 (349)
T ss_dssp             CCSSCCSSSHHHHHHHHHHHTSSSCEEBCTTCTTC-BTTCS-CHHHHHHHH
T ss_pred             eeccccccchhHHhhhhhhhcCCCCeeeCCCCCCC-cccCC-chhhHHHHH
Confidence                          33     36789999999855 79888 999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1px5a1	146	2'-5'-oligoadenylate synthetase 1, OAS1, second do	91.23

>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All alpha proteins
fold: PAP/OAS1 substrate-binding domain
superfamily: PAP/OAS1 substrate-binding domain
family: 2'-5'-oligoadenylate synthetase 1, OAS1, second domain
domain: 2'-5'-oligoadenylate synthetase 1, OAS1, second domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.23  E-value=0.28  Score=37.20  Aligned_cols=50  Identities=30%  Similarity=0.353  Sum_probs=40.1

Q ss_pred             hhhHHHHHHHHh--hc----cCCChhHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q psy2829          30 VMIIRLLRHLGQ--AW----NLINPWALELLVEKVIASA--GLPLSPGDALRRVFEAV   79 (176)
Q Consensus        30 ~ivIRILRDlr~--~w----~~Ls~W~lELLv~kai~sa--~~pLs~g~AfRRvlE~l   79 (176)
                      +-+||+.|.-++  .+    .-.+.++||||+.||-...  ....+..++||=|||+|
T Consensus         5 K~LIRLVKhWy~~~~~~~~~~lPpsYaLELLtiyAwE~g~~~~~f~~a~gFrtVleLv   62 (146)
T d1px5a1           5 KSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSRKTDFSTAQGFQTVLELV   62 (146)
T ss_dssp             HHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHH
Confidence            568888888776  22    2347899999999999873  34589999999999999