Psyllid ID: psy2832

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT
ccccccccEEEEccHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccccccccccccccEEEccccccccccEEEEEEEEccccccccccccccccEEEEEccccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHcccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHccEEcccccccccccccccccEEEEEEccc
ccccccccEEEEccHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHEEEHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccHHcccHHHHHHHHHHHHHHHHHHcccccEEEEcHHEEEEEEcccccccccEEEEEEEEEccccccccccEEcccEEEEEEccccEccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccc
mlmdpmggivmtndGNAILREITvqhpagksMIEIARTqdeevgdgTTSVIVLAGEMLNVAEKflsdqmhpTVIIKAYRSALEDMVNILETkvstpldksdrSKLIEVIKACVgtkfigkwSDLACNIALDAVQTvtveesgrkeidiKRYAKvekipggtiedscVLRGvmlnkdvthpkmrrrienpriVLLDCtleykkgesqtnveivnesdwrrsvthpkmrrrienpriVLLDCtleykkgesqtnVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIAlkpdliftEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEelreedvgtgaglfeikkvkt
MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIartqdeevgDGTTSVIVLAGEMLNVAEkflsdqmhpTVIIKAYRSALEDMVNILETkvstpldksdrsKLIEVIKACVGTKFIGKWSDLACNIALDAvqtvtveesgrkeidikryakvekipggtiedscvlrgvmlnkdvthpkmrrrienprivLLDCtleykkgesqtnveivnesdwrrsvthpkmrrrienprivlLDCTLEykkgesqtnveivnEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIrrvrksdnnriaracgativnrteelreedvgtgaglfeikkvkt
MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQleeeyvekleeeyvekVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT
********IVMTNDGNAILREITVQHPAGKSMIEIART***EVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLD**DRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVT***MRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEE**********GLF*******
MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVK*
MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT
*LMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query362 2.2.26 [Sep-21-2011]
P48605 544 T-complex protein 1 subun yes N/A 0.850 0.566 0.680 1e-138
P50143 547 T-complex protein 1 subun N/A N/A 0.848 0.561 0.652 1e-132
Q3T0K2 545 T-complex protein 1 subun yes N/A 0.848 0.563 0.647 1e-131
Q6P502 545 T-complex protein 1 subun yes N/A 0.848 0.563 0.644 1e-130
P80318 545 T-complex protein 1 subun yes N/A 0.848 0.563 0.641 1e-130
P49368 545 T-complex protein 1 subun yes N/A 0.848 0.563 0.641 1e-129
Q4R963 545 T-complex protein 1 subun N/A N/A 0.848 0.563 0.641 1e-129
Q5NVF9 545 T-complex protein 1 subun yes N/A 0.848 0.563 0.636 1e-129
O74341 528 T-complex protein 1 subun yes N/A 0.848 0.581 0.566 1e-115
Q54TH8 530 T-complex protein 1 subun yes N/A 0.848 0.579 0.559 1e-111
>sp|P48605|TCPG_DROME T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2 Back     alignment and function desciption
 Score =  492 bits (1267), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 245/360 (68%), Positives = 282/360 (78%), Gaps = 52/360 (14%)

Query: 1   MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
           MLMDPMGGIVMTNDGNAILREITVQHPA KSMIEIARTQDEEVGDGTTSVIVLAGEML  
Sbjct: 50  MLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAA 109

Query: 61  AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
           AE FL  Q+HPTVII+AYR ALED+V  L++++S  LD  D++K+ +V+KACVGTKFIGK
Sbjct: 110 AEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDKAKMADVVKACVGTKFIGK 169

Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
           WSDLA  IALDAV+TVT+ E+GR E+DIKRYAKVEKIPGG IE+SCVL+GVM+NKDVTHP
Sbjct: 170 WSDLAVKIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAIEESCVLKGVMINKDVTHP 229

Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
           KMRR IENPRIVLLDC+LEYKKGESQTNVEI+ E D                        
Sbjct: 230 KMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQD------------------------ 265

Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
                               FT++LQ        +EEE+V+++C DIIA+KPDL+FTEKG
Sbjct: 266 --------------------FTRMLQ--------IEEEFVQRICADIIAVKPDLVFTEKG 297

Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
           +SDLAQH+LLKA ITAIRR+RK+DN RIARACGATIVNRTEEL E+DVGTGAGLFE+KK+
Sbjct: 298 VSDLAQHYLLKAGITAIRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKI 357
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Drosophila melanogaster (taxid: 7227)
>sp|P50143|TCPG_XENLA T-complex protein 1 subunit gamma OS=Xenopus laevis GN=cct3 PE=2 SV=2 Back     alignment and function description
>sp|Q3T0K2|TCPG_BOVIN T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=1 SV=1 Back     alignment and function description
>sp|Q6P502|TCPG_RAT T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|P80318|TCPG_MOUSE T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1 Back     alignment and function description
>sp|P49368|TCPG_HUMAN T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4 Back     alignment and function description
>sp|Q4R963|TCPG_MACFA T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|Q5NVF9|TCPG_PONAB T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1 Back     alignment and function description
>sp|O74341|TCPG_SCHPO T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct3 PE=1 SV=1 Back     alignment and function description
>sp|Q54TH8|TCPG_DICDI T-complex protein 1 subunit gamma OS=Dictyostelium discoideum GN=cct3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
157125048 546 chaperonin [Aedes aegypti] gi|108873778| 0.850 0.564 0.713 1e-142
124487748429 putative T-complex protein 1 subunit gam 0.850 0.717 0.691 1e-142
312372027 538 hypothetical protein AND_20694 [Anophele 0.850 0.572 0.7 1e-139
195111328 544 GI10112 [Drosophila mojavensis] gi|19391 0.850 0.566 0.694 1e-138
374720905 548 AGAP002759-PA [Anopheles stephensi] 0.850 0.562 0.694 1e-138
170048590 546 T-complex protein 1 subunit gamma [Culex 0.850 0.564 0.694 1e-138
158290572 547 AGAP002759-PA [Anopheles gambiae str. PE 0.850 0.563 0.691 1e-138
332374458 550 unknown [Dendroctonus ponderosae] 0.850 0.56 0.686 1e-138
269852778 532 CG8977-like protein [Drosophila buzzatii 0.850 0.578 0.691 1e-138
195389562 544 GJ23334 [Drosophila virilis] gi|19415153 0.850 0.566 0.688 1e-138
>gi|157125048|ref|XP_001660595.1| chaperonin [Aedes aegypti] gi|108873778|gb|EAT38003.1| AAEL010063-PA [Aedes aegypti] Back     alignment and taxonomy information
 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/360 (71%), Positives = 286/360 (79%), Gaps = 52/360 (14%)

Query: 1   MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
           MLMDPMGGIVMTNDGNAILREITVQHPA KSMIEIARTQDEEVGDGTTSVIVLAGEML V
Sbjct: 50  MLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAV 109

Query: 61  AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
           AE+FL  Q+HPTVII+AYR ALEDM+ +LET VS PLDK+D+SKL EV+K+CVGTKFIG+
Sbjct: 110 AEQFLQQQIHPTVIIRAYREALEDMIKLLETDVSIPLDKADKSKLAEVVKSCVGTKFIGR 169

Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
           WSDLA  IALDAV+TV + E+GR EIDIK+YAKVEKIPGG+I+DSCVLRGVMLNKDVTHP
Sbjct: 170 WSDLAVKIALDAVETVMMTENGRTEIDIKKYAKVEKIPGGSIDDSCVLRGVMLNKDVTHP 229

Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
           KMRR IENPRIVLLDC LEYKKGESQTNVEIV + D                        
Sbjct: 230 KMRRYIENPRIVLLDCPLEYKKGESQTNVEIVGDQD------------------------ 265

Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
                               FTK+LQ        +EEE+V KVC DIIA+KPD++FTEKG
Sbjct: 266 --------------------FTKLLQ--------IEEEHVAKVCADIIAVKPDVVFTEKG 297

Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
           +SDLAQHFLLKA ITAIRR+RK+DNNR+ARACGATIVNRTEEL E+DVGTGAGLFEIKK+
Sbjct: 298 VSDLAQHFLLKAGITAIRRLRKTDNNRVARACGATIVNRTEELTEKDVGTGAGLFEIKKL 357

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|124487748|gb|ABN11961.1| putative T-complex protein 1 subunit gamma [Maconellicoccus hirsutus] Back     alignment and taxonomy information
>gi|312372027|gb|EFR20079.1| hypothetical protein AND_20694 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|195111328|ref|XP_002000231.1| GI10112 [Drosophila mojavensis] gi|193916825|gb|EDW15692.1| GI10112 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|374720905|gb|AEZ67841.1| AGAP002759-PA [Anopheles stephensi] Back     alignment and taxonomy information
>gi|170048590|ref|XP_001870702.1| T-complex protein 1 subunit gamma [Culex quinquefasciatus] gi|167870651|gb|EDS34034.1| T-complex protein 1 subunit gamma [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|158290572|ref|XP_312164.4| AGAP002759-PA [Anopheles gambiae str. PEST] gi|157017960|gb|EAA07808.4| AGAP002759-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|332374458|gb|AEE62370.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|269852778|gb|ACZ50717.1| CG8977-like protein [Drosophila buzzatii] Back     alignment and taxonomy information
>gi|195389562|ref|XP_002053445.1| GJ23334 [Drosophila virilis] gi|194151531|gb|EDW66965.1| GJ23334 [Drosophila virilis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query362
FB|FBgn0015019 544 Cctgamma "Cctgamma" [Drosophil 0.604 0.402 0.794 1.4e-93
ZFIN|ZDB-GENE-020419-5 543 cct3 "chaperonin containing TC 0.602 0.401 0.735 1.4e-85
UNIPROTKB|E2RB79 549 CCT3 "Uncharacterized protein" 0.602 0.397 0.735 2.1e-84
RGD|735038 545 Cct3 "chaperonin containing Tc 0.602 0.4 0.739 2.1e-84
UNIPROTKB|F1PDX9476 CCT3 "Uncharacterized protein" 0.602 0.457 0.735 2.1e-84
MGI|MGI:104708 545 Cct3 "chaperonin containing Tc 0.602 0.4 0.735 2.7e-84
UNIPROTKB|Q3T0K2 545 CCT3 "T-complex protein 1 subu 0.602 0.4 0.735 3.4e-84
UNIPROTKB|F1N5P4318 CCT3 "T-complex protein 1 subu 0.602 0.685 0.735 3.4e-84
UNIPROTKB|B4DUR8 500 CCT3 "cDNA, FLJ78822, highly s 0.602 0.436 0.730 3.9e-83
UNIPROTKB|P49368 545 CCT3 "T-complex protein 1 subu 0.602 0.4 0.730 3.9e-83
FB|FBgn0015019 Cctgamma "Cctgamma" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 903 (322.9 bits), Expect = 1.4e-93, Sum P(2) = 1.4e-93
 Identities = 174/219 (79%), Positives = 196/219 (89%)

Query:     1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
             MLMDPMGGIVMTNDGNAILREITVQHPA KSMIEIARTQDEEVGDGTTSVIVLAGEML  
Sbjct:    50 MLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAA 109

Query:    61 AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
             AE FL  Q+HPTVII+AYR ALED+V  L++++S  LD  D++K+ +V+KACVGTKFIGK
Sbjct:   110 AEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDKAKMADVVKACVGTKFIGK 169

Query:   121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
             WSDLA  IALDAV+TVT+ E+GR E+DIKRYAKVEKIPGG IE+SCVL+GVM+NKDVTHP
Sbjct:   170 WSDLAVKIALDAVETVTLSENGRLEVDIKRYAKVEKIPGGAIEESCVLKGVMINKDVTHP 229

Query:   181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRR 219
             KMRR IENPRIVLLDC+LEYKKGESQTNVEI+ E D+ R
Sbjct:   230 KMRRLIENPRIVLLDCSLEYKKGESQTNVEIIGEQDFTR 268
GO:0006457 "protein folding" evidence=ISS;NAS
GO:0005832 "chaperonin-containing T-complex" evidence=ISS
GO:0042623 "ATPase activity, coupled" evidence=ISS;NAS
GO:0051082 "unfolded protein binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0060439 "trachea morphogenesis" evidence=IMP
GO:0007430 "terminal branching, open tracheal system" evidence=IMP
ZFIN|ZDB-GENE-020419-5 cct3 "chaperonin containing TCP1, subunit 3 (gamma)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB79 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|735038 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PDX9 CCT3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:104708 Cct3 "chaperonin containing Tcp1, subunit 3 (gamma)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0K2 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1N5P4 CCT3 "T-complex protein 1 subunit gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DUR8 CCT3 "cDNA, FLJ78822, highly similar to T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P49368 CCT3 "T-complex protein 1 subunit gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54TH8TCPG_DICDINo assigned EC number0.55950.84800.5792yesN/A
P48605TCPG_DROMENo assigned EC number0.68050.85080.5661yesN/A
P49368TCPG_HUMANNo assigned EC number0.64160.84800.5633yesN/A
Q5NVF9TCPG_PONABNo assigned EC number0.63610.84800.5633yesN/A
P80318TCPG_MOUSENo assigned EC number0.64160.84800.5633yesN/A
Q3T0K2TCPG_BOVINNo assigned EC number0.64720.84800.5633yesN/A
O74341TCPG_SCHPONo assigned EC number0.56660.84800.5814yesN/A
Q6P502TCPG_RATNo assigned EC number0.64440.84800.5633yesN/A
P39077TCPG_YEASTNo assigned EC number0.50950.84800.5749yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
TIGR02344 525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 0.0
cd03337 480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-164
cd00309 464 cd00309, chaperonin_type_I_II, chaperonin families 2e-94
cd03343 517 cd03343, cpn60, cpn60 chaperonin family 2e-82
pfam00118 481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 6e-80
TIGR02339 519 TIGR02339, thermosome_arch, thermosome, various su 7e-72
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 4e-69
cd03335 527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-55
TIGR02340 536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-54
cd03339 526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 3e-50
cd03340 522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-49
TIGR02343 532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 8e-47
TIGR02345 523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 7e-46
cd03338 515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 4e-45
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 8e-42
TIGR02342 517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-41
TIGR02346 531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 2e-38
TIGR02347 531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 5e-38
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-37
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 7e-34
cd03336 517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 5e-33
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 6e-33
PTZ00212 533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 2e-32
TIGR02341 518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 7e-27
cd03342 484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 3e-09
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 9e-06
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 9e-05
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 7e-04
cd03341 472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 9e-04
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 0.004
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information 
 Score =  521 bits (1343), Expect = 0.0
 Identities = 230/361 (63%), Positives = 277/361 (76%), Gaps = 54/361 (14%)

Query: 1   MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
           ML+DPMGGIVMTNDGNAILREI V HPA KSMIE++RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 44  MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSV 103

Query: 61  AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
           AE FL   +HPT+II+AY+ AL+D +++LE ++S P+D +D + ++++I++C+GTKF+ +
Sbjct: 104 AEPFLEQNIHPTIIIRAYKKALDDALSVLE-EISIPVDVNDDAAMLKLIQSCIGTKFVSR 162

Query: 121 WSDLACNIALDAVQTVTVEE-SGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTH 179
           WSDL C++ALDAV+TV  +  +GRKEIDIKRYAKVEKIPGG IEDSCVL+GVM+NKDVTH
Sbjct: 163 WSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTH 222

Query: 180 PKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD 239
           PKMRR IENPRIVLLDC LEYKKGESQTNVEI+ E DW                      
Sbjct: 223 PKMRRYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDW---------------------- 260

Query: 240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEK 299
                                  +ILQ+EEEYV+ +        C DIIA+KPDL+ TEK
Sbjct: 261 ----------------------NRILQMEEEYVQLM--------CEDIIAVKPDLVITEK 290

Query: 300 GISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKK 359
           G+SDLAQH+LLKANI+AIRRVRK+DNNRIARACGATIVNR EELRE DVGTG GLFE+KK
Sbjct: 291 GVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKK 350

Query: 360 V 360
           +
Sbjct: 351 I 351

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes. Length = 525
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 362
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 100.0
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 100.0
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0361|consensus 543 100.0
KOG0364|consensus 527 100.0
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
KOG0358|consensus 534 100.0
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0360|consensus 545 100.0
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
KOG0363|consensus 527 100.0
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0362|consensus 537 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
KOG0359|consensus 520 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.96
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.88
KOG0357|consensus 400 99.87
KOG0356|consensus 550 99.73
KOG0230|consensus 1598 99.64
KOG0364|consensus 527 99.27
KOG0360|consensus 545 99.25
KOG0358|consensus 534 99.16
TIGR02343 532 chap_CCT_epsi T-complex protein 1, epsilon subunit 99.06
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.05
TIGR02339 519 thermosome_arch thermosome, various subunits, arch 99.01
cd03339 526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 99.0
TIGR02344 525 chap_CCT_gamma T-complex protein 1, gamma subunit. 98.96
cd03335 527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 98.94
TIGR02342 517 chap_CCT_delta T-complex protein 1, delta subunit. 98.93
cd03343 517 cpn60 cpn60 chaperonin family. Chaperonins are inv 98.92
PTZ00212 533 T-complex protein 1 subunit beta; Provisional 98.88
KOG0361|consensus 543 98.86
TIGR02340 536 chap_CCT_alpha T-complex protein 1, alpha subunit. 98.84
cd03336 517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 98.84
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 98.83
KOG0363|consensus 527 98.82
TIGR02347 531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 98.82
cd03340 522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 98.76
cd03338 515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 98.75
TIGR02345 522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 98.75
TIGR02341 519 chap_CCT_beta T-complex protein 1, beta subunit. M 98.67
TIGR02346 531 chap_CCT_theta T-complex protein 1, theta subunit. 98.59
cd03337 480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 98.03
cd03342 484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 98.02
PF00118 485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 97.94
cd00309 464 chaperonin_type_I_II chaperonin families, type I a 97.74
KOG0359|consensus 520 97.61
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 97.48
PRK00013 542 groEL chaperonin GroEL; Reviewed 96.79
cd03341 472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 96.7
PRK12849 542 groEL chaperonin GroEL; Reviewed 96.45
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 96.36
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 96.28
PLN03167 600 Chaperonin-60 beta subunit; Provisional 96.17
PTZ00114 555 Heat shock protein 60; Provisional 96.16
PRK12851 541 groEL chaperonin GroEL; Reviewed 95.8
PRK12850 544 groEL chaperonin GroEL; Reviewed 95.46
CHL00093 529 groEL chaperonin GroEL 95.35
PRK12852 545 groEL chaperonin GroEL; Reviewed 94.89
KOG0362|consensus 537 94.7
PRK14104 546 chaperonin GroEL; Provisional 91.2
KOG0230|consensus 1598 85.15
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information 
Probab=100.00  E-value=1.3e-56  Score=450.82  Aligned_cols=309  Identities=74%  Similarity=1.192  Sum_probs=284.8

Q ss_pred             CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832           1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS   80 (362)
Q Consensus         1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~   80 (362)
                      ||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||||||+++||++||++|.+|+++|+||+.|++||+.
T Consensus        44 ~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~  123 (525)
T TIGR02344        44 MLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKK  123 (525)
T ss_pred             eEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhcccc-CCccccccccceeEEEcCC
Q psy2832          81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEE-SGRKEIDIKRYAKVEKIPG  159 (362)
Q Consensus        81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~-~~~~~~d~~~~i~i~ki~g  159 (362)
                      |.+.++++|+ +++++++..+.+.|+++|+|++++|...+|.+.+++++++|+..+.++. .+...+|+.+++.+.++.|
T Consensus       124 a~~~~~~~L~-~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~G  202 (525)
T TIGR02344       124 ALDDALSVLE-EISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPG  202 (525)
T ss_pred             HHHHHHHHHH-HhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecC
Confidence            9999999999 9999998878899999999999999999999999999999999997543 1223566666688999999


Q ss_pred             CCcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeec
Q psy2832         160 GTIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLD  239 (362)
Q Consensus       160 ~s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~  239 (362)
                      ++++||++++|+++++++.++.|++.++||+|++++++++                                        
T Consensus       203 g~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le----------------------------------------  242 (525)
T TIGR02344       203 GDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLE----------------------------------------  242 (525)
T ss_pred             CChHhcCcccceEEecccCCCCCccccCCCCEEEEecccc----------------------------------------
Confidence            9999999999999999877777777777777777777777                                        


Q ss_pred             ccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEee
Q psy2832         240 CTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRR  319 (362)
Q Consensus       240 ~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~  319 (362)
                          +.+++.++.+.+.+++++.++...|++        +++++++++.+.++++|+++++++++++++|.++||+++++
T Consensus       243 ----~~~~~~~~~i~i~~~~~~~~~l~~E~~--------~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~  310 (525)
T TIGR02344       243 ----YKKGESQTNVEIMKEEDWNRILQMEEE--------YVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRR  310 (525)
T ss_pred             ----cccccccceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEec
Confidence                667777789999999999999988887        99999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832         320 VRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT  362 (362)
Q Consensus       320 v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~  362 (362)
                      +++.+++|||++|||.++++++.++++.+|++|+.|+++++|+
T Consensus       311 v~~~~LerIa~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~  353 (525)
T TIGR02344       311 VRKTDNNRIARACGATIVNRPEELRESDVGTGCGLFEVKKIGD  353 (525)
T ss_pred             CCHHHHHHHHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECC
Confidence            9999999999999999999999999999999789999988774

Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>KOG0356|consensus Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3iyg_G 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-127
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 4e-97
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 2e-52
1q3r_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-51
1q3s_A 548 Crystal Structure Of The Chaperonin From Thermococc 7e-51
1q2v_A 548 Crystal Structure Of The Chaperonin From Thermococc 2e-50
3aq1_B 500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-50
3izh_A 513 Mm-Cpn D386a With Atp Length = 513 2e-48
3los_A 543 Atomic Model Of Mm-Cpn In The Closed State Length = 2e-48
1a6d_B 543 Thermosome From T. Acidophilum Length = 543 2e-48
3izi_A 513 Mm-Cpn Rls With Atp Length = 513 7e-48
3rus_A 543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 9e-48
3j02_A 491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 4e-42
3iyf_A 521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 4e-42
3izn_A 491 Mm-Cpn Deltalid With Atp Length = 491 4e-42
3izk_A 491 Mm-Cpn Rls Deltalid With Atp Length = 491 2e-41
3ko1_A 553 Cystal Structure Of Thermosome From Acidianus Tengc 2e-38
1a6d_A 545 Thermosome From T. Acidophilum Length = 545 2e-37
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-35
3iyg_A 529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-32
3iyg_E 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-31
3iyg_D 518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-31
3p9d_G 550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-29
3p9d_E 562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-29
3iyg_Z 517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-29
3p9d_D 528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-28
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-25
3iyg_H 515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-25
3p9d_H 568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-22
3iyg_B 513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-20
3p9d_B 527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 8e-20
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 6e-18
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 1e-12
3iyg_Q 512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-10
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/360 (63%), Positives = 266/360 (73%), Gaps = 53/360 (14%)
Query: 1   MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
           ML+DPMGGIVMTNDGNAILREI VQHPA KSMIEI+RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 37  MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSV 96
Query: 61  AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
           AE FL  QMHPTV+I AYR AL+DM++ L+ K+S P+D S+R  ++ +I + + TK I +
Sbjct: 97  AEHFLEQQMHPTVVISAYRKALDDMISTLK-KISIPVDTSNRDTMLNIINSSITTKVISR 155
Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
           WS LACNIALDAV+TV  EE+GRKEIDIK+YA+VEKIPGG IEDSCVLRGVM+NKDVTHP
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
           +MRR I+NPRIVLLD +LEYKKGESQT++EI  E D                        
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREED------------------------ 251
Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQXXXXXXXXXXXXXXXXVCNDIIALKPDLIFTEKG 300
                               FT+ILQ                +C DII LKPD++ TEKG
Sbjct: 252 --------------------FTRILQ--------MEEEYIQQLCEDIIQLKPDVVITEKG 283
Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
           ISDLAQH+L++ANITAIRRVRK+DNNRIARACGA IV+R EELREEDVGTGAGL EIKK+
Sbjct: 284 ISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKI 343
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query362
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-148
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 1e-145
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 1e-142
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 1e-141
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 1e-140
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 1e-140
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 1e-139
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-138
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 1e-137
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-137
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 1e-137
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 1e-135
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-135
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 1e-135
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-134
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 1e-133
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 1e-132
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-132
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 1e-130
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 1e-129
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 1e-123
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-121
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 1e-59
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 1e-56
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
 Score =  427 bits (1100), Expect = e-148
 Identities = 232/360 (64%), Positives = 274/360 (76%), Gaps = 53/360 (14%)

Query: 1   MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNV 60
           ML+DPMGGIVMTNDGNAILREI VQHPA KSMIEI+RTQDEEVGDGTTSVI+LAGEML+V
Sbjct: 37  MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSV 96

Query: 61  AEKFLSDQMHPTVIIKAYRSALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGK 120
           AE FL  QMHPTV+I AYR AL+DM++ L+ K+S P+D S+R  ++ +I + + TK I +
Sbjct: 97  AEHFLEQQMHPTVVISAYRKALDDMISTLK-KISIPVDTSNRDTMLNIINSSITTKVISR 155

Query: 121 WSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGGTIEDSCVLRGVMLNKDVTHP 180
           WS LACNIALDAV+TV  EE+GRKEIDIK+YA+VEKIPGG IEDSCVLRGVM+NKDVTHP
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215

Query: 181 KMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC 240
           +MRR I+NPRIVLLD +LEYKKGESQT++EI  E D+                       
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDF----------------------- 252

Query: 241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKG 300
                                T+ILQ+EEEY+++L        C DII LKPD++ TEKG
Sbjct: 253 ---------------------TRILQMEEEYIQQL--------CEDIIQLKPDVVITEKG 283

Query: 301 ISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKV 360
           ISDLAQH+L++ANITAIRRVRK+DNNRIARACGA IV+R EELREEDVGTGAGL EIKK+
Sbjct: 284 ISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKI 343
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 100.0
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.98
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.97
3iyg_A 529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 99.37
3iyg_G 515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 99.35
3iyg_Z 517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 99.26
3aq1_B 500 Thermosome subunit; group II chaperonin, protein f 99.23
3iyg_B 513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 99.23
3iyg_H 515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 99.19
3iyg_E 515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 99.19
3iyg_D 518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 99.18
3ko1_A 553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 99.18
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 99.11
3p9d_D 528 T-complex protein 1 subunit delta; HSP60, eukaryot 99.08
1a6d_B 543 Thermosome (beta subunit); group II chaperonin, CC 99.07
1q3q_A 548 Thermosome alpha subunit; chaperone, chaperonin; H 99.07
3ruv_A 543 Chaperonin, CPN; double-ring, protein folding mach 99.07
3p9d_A 559 T-complex protein 1 subunit alpha; HSP60, eukaryot 99.07
1a6d_A 545 Thermosome (alpha subunit); group II chaperonin, C 99.04
3iyg_Q 512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 99.0
3p9d_G 550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 98.98
3p9d_F 546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 98.97
3p9d_E 562 T-complex protein 1 subunit epsilon; HSP60, eukary 98.92
3p9d_H 568 T-complex protein 1 subunit theta; HSP60, eukaryot 98.86
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 98.78
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 97.49
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 97.47
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 97.3
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 97.13
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 97.08
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 96.59
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 96.36
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 96.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 95.37
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
Probab=100.00  E-value=3.3e-61  Score=480.22  Aligned_cols=309  Identities=75%  Similarity=1.177  Sum_probs=287.8

Q ss_pred             CccCCCCCeEEeccHHHHHhhccccChhhHHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy2832           1 MLMDPMGGIVMTNDGNAILREITVQHPAGKSMIEIARTQDEEVGDGTTSVIVLAGEMLNVAEKFLSDQMHPTVIIKAYRS   80 (362)
Q Consensus         1 m~~~~~g~~~iTnDg~tIl~~l~~~hP~akll~~~~~~~~~~~GDGttt~viL~~~ll~~~~~li~~gi~p~~ii~g~~~   80 (362)
                      ||+++.|+++|||||+|||++|+++||+|||++++|++||+++||||||+||||++||++|++++.+|+||..|++||++
T Consensus        37 ml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~  116 (515)
T 3iyg_G           37 MLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRK  116 (515)
T ss_pred             EEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCCcCCHHHHHHHHHHHhhcccccchHHHHHHHHHHHHhhhccccCCccccccccceeEEEcCCC
Q psy2832          81 ALEDMVNILETKVSTPLDKSDRSKLIEVIKACVGTKFIGKWSDLACNIALDAVQTVTVEESGRKEIDIKRYAKVEKIPGG  160 (362)
Q Consensus        81 a~~~~~~~l~~~~~~~v~~~~~~~ll~ia~t~l~~k~i~~~~~~~~~l~~~ai~~i~~~~~~~~~~d~~~~i~i~ki~g~  160 (362)
                      |++.++++|+ +++++++..|++.|.++|+|++++|.+..|.+.+++++++++..+.++..+...+|+.+++++.++.|+
T Consensus       117 A~~~a~~~L~-~~s~~v~~~~~~~l~~va~tsl~sK~i~~~~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Gg  195 (515)
T 3iyg_G          117 ALDDMISTLK-KISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGG  195 (515)
T ss_pred             HHHHHHHHHH-HhhcccCCCCHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCC
Confidence            9999999999 999999888899999999999999999999999999999999888643333345677767899999999


Q ss_pred             CcccceeEeceeeccccCCccCcccccCceEEEeecccccccCCCccceeeecccccccccccchhhccccCcceeeecc
Q psy2832         161 TIEDSCVLRGVMLNKDVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNESDWRRSVTHPKMRRRIENPRIVLLDC  240 (362)
Q Consensus       161 s~~dS~lv~Giv~~~~~~~~~m~~~~~~~~i~l~~~~l~~~~g~s~~~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~  240 (362)
                      ++.+|++++|++|++++.+++|++.++||+|++++++++                                         
T Consensus       196 s~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le-----------------------------------------  234 (515)
T 3iyg_G          196 IIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLE-----------------------------------------  234 (515)
T ss_pred             CcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEccccc-----------------------------------------
Confidence            999999999999999988888877777777777777777                                         


Q ss_pred             cccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeC
Q psy2832         241 TLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRV  320 (362)
Q Consensus       241 ~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v  320 (362)
                         ++|+++++++.+++++++.++...|++        +++++++++.+.++++|+++++|+++++++|.++||++++++
T Consensus       235 ---~~k~e~~~~v~is~~~~l~~~l~~E~~--------~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~  303 (515)
T 3iyg_G          235 ---YKKGESQTDIEITREEDFTRILQMEEE--------YIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRV  303 (515)
T ss_pred             ---ccccccCceEEeCCHHHHHHHHHHHHH--------HHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccC
Confidence               778888889999999999999998888        999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832         321 RKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT  362 (362)
Q Consensus       321 ~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~  362 (362)
                      ++.+++|||++||+.+++++++++++++|++|+.|++.++|+
T Consensus       304 ~k~~leria~~tGa~ii~~l~~l~~~~LG~~a~~v~~~~~g~  345 (515)
T 3iyg_G          304 RKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGD  345 (515)
T ss_pred             CHHHHHHHHHHhCCeeeccccccChhhcCCcccEEEEEEECC
Confidence            999999999999999999999999999999779999998874
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 362
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 9e-33
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 9e-32
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 5e-31
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 7e-31
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 8e-23
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 2e-22
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 3e-20
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 2e-18
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 1e-16
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 2e-15
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 3e-11
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 9e-11
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  118 bits (296), Expect = 9e-33
 Identities = 100/143 (69%), Positives = 121/143 (84%), Gaps = 8/143 (5%)

Query: 218 RRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEE 277
            + VTHP+MRR I+NPRIVLLD +LEYKKGESQT++EI  E +FT+ILQ+EEEY+ +L  
Sbjct: 11  NKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQL-- 68

Query: 278 EYVEKVCNDIIALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIV 337
                 C DII LKPD++ TEKGISDLAQH+L++AN+TAIRRVRK+DNNRIARACGA IV
Sbjct: 69  ------CEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIV 122

Query: 338 NRTEELREEDVGTGAGLFEIKKV 360
           +R EELRE+DVGTGAGL EIKK+
Sbjct: 123 SRPEELREDDVGTGAGLLEIKKI 145
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query362
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.96
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.96
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.96
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 99.9
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.87
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.86
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.81
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 99.73
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 99.55
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.45
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.44
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.44
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.4
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.37
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.26
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.05
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 97.19
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 97.14
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 97.02
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 96.74
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 96.69
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 94.8
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 94.54
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 94.11
d1eo1a_124 Hypothetical protein MTH1175 {Archaeon Methanobact 80.84
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 80.23
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

Probab=99.96  E-value=6.8e-30  Score=216.48  Aligned_cols=147  Identities=67%  Similarity=1.077  Sum_probs=129.3

Q ss_pred             ceeeecccccccccccchhhccccCcceeeecccccccccccceeEEEcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy2832         208 NVEIVNESDWRRSVTHPKMRRRIENPRIVLLDCTLEYKKGESQTNVEIVNEAEFTKILQLEEEYVEKLEEEYVEKVCNDI  287 (362)
Q Consensus       208 ~s~l~~G~~~~~~~~~~~~~~~i~~~ki~~~~~~~~~~k~~~~~~l~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i  287 (362)
                      ||++++|+++++.+.|++||+.+++|||++++|++++++++.++++.+++++++..+...|++        ++.+++++|
T Consensus         1 DS~li~Gvvi~k~~~~~~m~~~i~~~kIlll~~~le~~~~~~~~~i~i~~~~~l~~~~~~E~~--------~l~~~v~~I   72 (168)
T d1gmla_           1 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEE--------YIHQLCEDI   72 (168)
T ss_dssp             CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHH--------HHHHHHHHH
T ss_pred             CcEEEEEEEEecccCCcCCccccCCceEEEEeccccccccccccceecCCHHHHHHHHHHHHH--------HHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999998888        999999999


Q ss_pred             HhCCCcEEEeCCCCCHHHHHHHHhCCCeEEeeCChhhHHHHHHHhCCeEccCCCCCCCCCCCCCcceEEEEecCC
Q psy2832         288 IALKPDLIFTEKGISDLAQHFLLKANITAIRRVRKSDNNRIARACGATIVNRTEELREEDVGTGAGLFEIKKVKT  362 (362)
Q Consensus       288 ~~~~v~~I~~~~gi~~~~~~~l~~~~I~~i~~v~~~~l~~la~~tG~~iv~~~~~~~~~~lG~~~~~~~~~~~~~  362 (362)
                      .+.+||+|+++++|++.|+++|.++||++++++++.+++|||++|||.+++++++++++++|++|..++++++|+
T Consensus        73 ~~~g~~vv~~~~~I~~~a~~~L~~~gI~~~~rv~~~dl~ria~~tga~iv~si~~l~~~~lG~~~~~~~~~~~~~  147 (168)
T d1gmla_          73 IQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGD  147 (168)
T ss_dssp             HTTCCSEEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETT
T ss_pred             HhcCCceEEEcCCCCHHHHHHHHHCCCeeeccCCHHHHHHHHHHHCCceeCchhhcCcccccccccEEEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999999999999889999988875
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1eo1a_ c.55.5.1 (A:) Hypothetical protein MTH1175 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure